Query 014499
Match_columns 423
No_of_seqs 76 out of 78
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jt1_A PEFI protein; solution 94.2 0.069 2.4E-06 42.6 5.3 49 82-132 4-57 (77)
2 3f2g_A Alkylmercury lyase; MER 93.9 0.047 1.6E-06 51.7 4.6 59 81-146 21-79 (220)
3 2heo_A Z-DNA binding protein 1 93.7 0.095 3.2E-06 39.9 5.1 51 83-135 11-61 (67)
4 3i71_A Ethanolamine utilizatio 93.4 0.098 3.4E-06 41.1 4.8 44 85-130 6-49 (68)
5 2lnb_A Z-DNA-binding protein 1 92.5 0.16 5.6E-06 41.5 5.0 43 82-124 19-61 (80)
6 1q1h_A TFE, transcription fact 91.2 0.48 1.6E-05 38.0 6.5 57 82-140 18-79 (110)
7 1xmk_A Double-stranded RNA-spe 89.5 0.56 1.9E-05 37.7 5.4 61 81-144 10-71 (79)
8 3r0a_A Putative transcriptiona 89.4 1.9 6.4E-05 35.8 8.8 85 82-170 26-116 (123)
9 2htj_A P fimbrial regulatory p 87.1 0.74 2.5E-05 35.3 4.5 45 84-131 2-46 (81)
10 1qbj_A Protein (double-strande 87.1 0.79 2.7E-05 36.6 4.8 49 81-131 9-59 (81)
11 3cuq_B Vacuolar protein-sortin 85.4 1.8 6.3E-05 40.3 7.1 69 74-145 145-214 (218)
12 1qgp_A Protein (double strande 84.9 1.2 4.2E-05 34.8 4.9 50 80-131 12-63 (77)
13 3cuq_A Vacuolar-sorting protei 84.1 1.3 4.3E-05 42.3 5.5 69 73-145 144-216 (234)
14 2fu4_A Ferric uptake regulatio 83.5 1.9 6.6E-05 32.8 5.4 58 81-140 16-81 (83)
15 1oyi_A Double-stranded RNA-bin 82.7 1.2 4.1E-05 36.3 4.0 48 81-132 16-63 (82)
16 2oqg_A Possible transcriptiona 82.0 12 0.0004 29.4 9.7 63 79-145 18-82 (114)
17 1y0u_A Arsenical resistance op 81.5 2.3 7.7E-05 33.3 5.2 54 80-141 29-82 (96)
18 3cuo_A Uncharacterized HTH-typ 81.4 2.6 9E-05 32.2 5.4 59 80-141 22-81 (99)
19 1r1u_A CZRA, repressor protein 81.0 4.5 0.00015 32.3 6.9 59 79-141 23-81 (106)
20 3f6o_A Probable transcriptiona 80.6 7.5 0.00026 31.6 8.3 59 79-141 15-74 (118)
21 1xn7_A Hypothetical protein YH 79.4 2.4 8.1E-05 33.7 4.7 41 83-124 3-43 (78)
22 2k02_A Ferrous iron transport 79.1 2.4 8.3E-05 34.6 4.7 41 83-124 3-43 (87)
23 1u5t_A Appears to BE functiona 78.6 1.9 6.4E-05 41.1 4.5 59 84-145 169-229 (233)
24 2kko_A Possible transcriptiona 78.0 4 0.00014 32.9 5.8 56 81-140 24-79 (108)
25 3jth_A Transcription activator 77.7 2.7 9.2E-05 32.8 4.5 58 80-141 21-79 (98)
26 3b73_A PHIH1 repressor-like pr 76.1 6 0.00021 33.2 6.5 64 83-151 14-79 (111)
27 2l0k_A Stage III sporulation p 75.4 1.9 6.6E-05 35.4 3.2 38 80-119 5-42 (93)
28 3vp5_A Transcriptional regulat 73.1 2.1 7.1E-05 36.2 2.9 37 77-113 7-48 (189)
29 1ub9_A Hypothetical protein PH 73.0 16 0.00056 27.6 7.8 57 80-139 14-73 (100)
30 2jsc_A Transcriptional regulat 71.3 9.1 0.00031 31.2 6.3 56 81-140 20-75 (118)
31 2v9v_A Selenocysteine-specific 70.4 23 0.00079 28.9 8.7 65 83-149 3-67 (135)
32 2x4h_A Hypothetical protein SS 70.0 30 0.001 28.0 9.2 47 85-133 16-65 (139)
33 3h5t_A Transcriptional regulat 68.0 7.2 0.00025 36.4 5.7 75 92-166 4-100 (366)
34 3f6v_A Possible transcriptiona 67.9 10 0.00034 32.9 6.2 59 79-141 55-113 (151)
35 3pqk_A Biofilm growth-associat 66.5 8.5 0.00029 30.1 5.0 59 79-141 20-79 (102)
36 1r1t_A Transcriptional repress 65.9 14 0.0005 30.5 6.5 57 81-141 45-101 (122)
37 2o0y_A Transcriptional regulat 65.5 5 0.00017 37.2 4.0 53 85-141 23-78 (260)
38 4hku_A LMO2814 protein, TETR t 65.4 2.8 9.6E-05 35.0 2.1 31 81-111 6-41 (178)
39 2xvc_A ESCRT-III, SSO0910; cel 65.3 10 0.00035 29.4 5.0 45 80-124 8-52 (59)
40 3bqz_B HTH-type transcriptiona 65.3 3.6 0.00012 33.8 2.7 34 81-114 1-39 (194)
41 3kkc_A TETR family transcripti 65.3 4.1 0.00014 33.1 3.0 32 82-113 12-48 (177)
42 2zkz_A Transcriptional repress 65.2 15 0.0005 29.0 6.2 59 79-141 24-82 (99)
43 1mkm_A ICLR transcriptional re 64.9 34 0.0011 31.2 9.4 48 86-135 12-59 (249)
44 3ppb_A Putative TETR family tr 64.5 4 0.00014 33.3 2.8 34 81-114 8-46 (195)
45 3nrg_A TETR family transcripti 64.4 3.3 0.00011 34.7 2.3 35 78-112 9-48 (217)
46 2cyy_A Putative HTH-type trans 64.3 8.1 0.00028 32.5 4.7 41 83-124 8-48 (151)
47 1sfu_A 34L protein; protein/Z- 64.0 10 0.00034 30.5 4.9 52 81-134 11-64 (75)
48 2qwt_A Transcriptional regulat 63.8 3.8 0.00013 34.6 2.6 32 83-114 14-49 (196)
49 3vpr_A Transcriptional regulat 63.7 3.8 0.00013 34.1 2.5 33 82-114 3-40 (190)
50 2d1h_A ST1889, 109AA long hypo 62.6 12 0.00041 28.5 5.1 48 84-133 23-70 (109)
51 2lkp_A Transcriptional regulat 62.1 24 0.00082 28.1 7.0 58 82-143 32-89 (119)
52 2p5k_A Arginine repressor; DNA 61.9 21 0.0007 25.4 6.0 53 83-140 5-63 (64)
53 2eh3_A Transcriptional regulat 61.6 4.3 0.00015 33.5 2.5 32 82-113 2-38 (179)
54 2w25_A Probable transcriptiona 60.8 10 0.00035 31.7 4.8 44 83-129 8-51 (150)
55 1u2w_A CADC repressor, cadmium 60.7 35 0.0012 27.9 7.9 53 81-136 41-93 (122)
56 2q24_A Putative TETR family tr 60.7 4.5 0.00016 33.7 2.5 32 83-114 16-51 (194)
57 2pn6_A ST1022, 150AA long hypo 60.5 7.9 0.00027 32.3 4.0 42 82-124 3-44 (150)
58 3nnr_A Transcriptional regulat 60.5 4.1 0.00014 34.9 2.3 34 80-113 3-41 (228)
59 2e1c_A Putative HTH-type trans 60.3 10 0.00034 33.3 4.8 42 82-124 27-68 (171)
60 2cg4_A Regulatory protein ASNC 59.3 11 0.00037 31.7 4.6 41 83-124 9-49 (152)
61 2dbb_A Putative HTH-type trans 58.5 12 0.00042 31.2 4.8 45 83-130 10-54 (151)
62 2nnn_A Probable transcriptiona 58.2 49 0.0017 26.1 8.2 47 83-132 39-85 (140)
63 1sfx_A Conserved hypothetical 58.0 14 0.0005 27.9 4.8 57 82-141 20-78 (109)
64 2o03_A Probable zinc uptake re 58.0 27 0.00091 29.1 6.8 59 81-141 10-75 (131)
65 1i1g_A Transcriptional regulat 57.7 12 0.00041 30.6 4.6 41 83-124 5-45 (141)
66 3jsj_A Putative TETR-family tr 57.4 5.4 0.00019 32.9 2.4 34 81-114 8-45 (190)
67 2zcm_A Biofilm operon icaabcd 57.3 5 0.00017 33.3 2.2 30 85-114 14-44 (192)
68 3bdd_A Regulatory protein MARR 57.3 32 0.0011 27.3 6.9 48 83-133 32-79 (142)
69 3mq0_A Transcriptional repress 56.5 8 0.00027 36.3 3.7 52 86-141 34-85 (275)
70 2cfx_A HTH-type transcriptiona 56.2 14 0.00048 30.9 4.8 45 83-130 6-50 (144)
71 1ku9_A Hypothetical protein MJ 55.9 74 0.0025 25.1 10.7 60 83-144 27-89 (152)
72 1zk8_A Transcriptional regulat 55.7 6.2 0.00021 32.3 2.5 32 82-113 8-44 (183)
73 3gzi_A Transcriptional regulat 55.1 6.3 0.00021 33.1 2.5 34 81-114 16-54 (218)
74 4a0z_A Transcription factor FA 54.5 12 0.00041 33.9 4.4 40 83-123 13-52 (190)
75 2rek_A Putative TETR-family tr 54.5 5.1 0.00017 33.4 1.8 32 83-114 17-52 (199)
76 2ia0_A Putative HTH-type trans 54.2 17 0.00057 31.8 5.1 42 82-124 17-58 (171)
77 2p5v_A Transcriptional regulat 53.9 16 0.00054 31.1 4.8 41 83-124 11-51 (162)
78 1p6r_A Penicillinase repressor 53.8 27 0.00092 26.2 5.7 55 82-139 9-67 (82)
79 2k9l_A RNA polymerase sigma fa 53.4 8.6 0.00029 30.0 2.8 38 85-122 35-73 (76)
80 3f1b_A TETR-like transcription 53.2 7.1 0.00024 32.1 2.5 33 82-114 14-51 (203)
81 2xrn_A HTH-type transcriptiona 53.2 14 0.00047 33.8 4.6 53 86-141 10-62 (241)
82 3qkx_A Uncharacterized HTH-typ 53.1 8.4 0.00029 31.2 2.9 32 82-113 8-44 (188)
83 3k2z_A LEXA repressor; winged 53.1 14 0.0005 32.5 4.6 45 86-132 13-57 (196)
84 2gmg_A Hypothetical protein PF 52.9 10 0.00036 32.3 3.4 43 81-125 10-56 (105)
85 3f3x_A Transcriptional regulat 52.7 62 0.0021 25.9 8.1 46 84-133 39-84 (144)
86 3nxc_A HTH-type protein SLMA; 52.2 5.4 0.00019 33.2 1.6 34 81-114 23-62 (212)
87 3i4p_A Transcriptional regulat 52.2 13 0.00045 31.8 4.1 42 83-125 4-45 (162)
88 3g1o_A Transcriptional regulat 52.0 7.5 0.00026 34.1 2.6 35 80-114 41-80 (255)
89 3lhq_A Acrab operon repressor 51.9 8.5 0.00029 31.9 2.7 32 83-114 15-51 (220)
90 2id6_A Transcriptional regulat 51.7 4.7 0.00016 34.1 1.1 35 79-113 2-41 (202)
91 3dew_A Transcriptional regulat 51.5 7.6 0.00026 31.8 2.4 33 82-114 8-45 (206)
92 3lwj_A Putative TETR-family tr 51.4 7.7 0.00026 32.1 2.4 33 81-113 11-48 (202)
93 3he0_A Transcriptional regulat 51.2 9.7 0.00033 31.2 3.0 34 81-114 10-48 (196)
94 3kz9_A SMCR; transcriptional r 51.2 8.6 0.00029 31.6 2.6 33 82-114 17-54 (206)
95 3pas_A TETR family transcripti 51.2 4.5 0.00015 33.0 0.9 33 82-114 8-45 (195)
96 1z91_A Organic hydroperoxide r 50.7 26 0.0009 28.1 5.5 47 83-132 41-87 (147)
97 2dk5_A DNA-directed RNA polyme 50.3 19 0.00066 29.0 4.6 46 83-130 21-67 (91)
98 1u5t_B Defective in vacuolar p 50.3 23 0.0008 31.8 5.5 60 77-139 93-161 (169)
99 2gxg_A 146AA long hypothetical 49.9 24 0.00082 28.2 5.1 46 83-132 38-83 (146)
100 3eco_A MEPR; mutlidrug efflux 49.9 33 0.0011 27.3 6.0 48 83-132 32-80 (139)
101 2fd5_A Transcriptional regulat 49.7 8.3 0.00029 31.6 2.3 30 82-111 7-41 (180)
102 3col_A Putative transcription 49.5 7.6 0.00026 31.6 2.1 34 81-114 9-47 (196)
103 2iai_A Putative transcriptiona 49.5 7.8 0.00027 33.5 2.2 31 83-113 35-66 (230)
104 4a6d_A Hydroxyindole O-methylt 49.2 28 0.00097 33.3 6.3 70 78-149 24-94 (353)
105 1s3j_A YUSO protein; structura 49.2 1E+02 0.0035 24.8 9.1 47 84-133 39-85 (155)
106 2y75_A HTH-type transcriptiona 49.1 21 0.00071 29.2 4.7 45 86-132 13-59 (129)
107 2eth_A Transcriptional regulat 49.0 1.1E+02 0.0036 24.9 9.1 47 83-132 45-91 (154)
108 3bro_A Transcriptional regulat 49.0 21 0.00073 28.4 4.6 48 83-132 35-83 (141)
109 3dpj_A Transcription regulator 48.8 9 0.00031 31.5 2.4 33 82-114 8-45 (194)
110 3ccy_A Putative TETR-family tr 48.7 11 0.00037 31.6 2.9 31 82-112 14-49 (203)
111 2fe3_A Peroxide operon regulat 48.4 37 0.0013 28.8 6.3 60 80-141 20-86 (145)
112 2a61_A Transcriptional regulat 48.1 98 0.0034 24.5 8.5 47 83-132 34-80 (145)
113 3fm5_A Transcriptional regulat 47.8 22 0.00075 29.0 4.6 48 83-132 40-87 (150)
114 3f0c_A TETR-molecule A, transc 47.8 10 0.00035 31.7 2.6 34 81-114 10-48 (216)
115 3mvp_A TETR/ACRR transcription 47.7 8.4 0.00029 32.0 2.1 34 81-114 25-63 (217)
116 1sgm_A Putative HTH-type trans 47.5 10 0.00035 30.8 2.5 31 82-112 6-41 (191)
117 1t33_A Putative transcriptiona 47.4 9 0.00031 32.3 2.2 33 82-114 12-48 (224)
118 1tc3_C Protein (TC3 transposas 47.2 26 0.00087 22.6 4.1 40 78-120 5-44 (51)
119 3mwm_A ZUR, putative metal upt 47.0 48 0.0016 27.9 6.8 61 81-141 13-78 (139)
120 2xvc_A ESCRT-III, SSO0910; cel 46.9 5.9 0.0002 30.7 0.9 36 274-314 13-48 (59)
121 3nrv_A Putative transcriptiona 46.9 28 0.00094 28.1 5.0 46 84-132 42-87 (148)
122 2pij_A Prophage PFL 6 CRO; tra 46.8 33 0.0011 24.4 5.0 51 85-141 4-54 (67)
123 2yve_A Transcriptional regulat 46.8 12 0.00041 31.2 2.9 32 83-114 5-41 (185)
124 3rd3_A Probable transcriptiona 46.5 12 0.0004 30.6 2.7 34 81-114 9-47 (197)
125 1on2_A Transcriptional regulat 46.4 99 0.0034 25.0 8.4 38 95-134 20-57 (142)
126 3mkl_A HTH-type transcriptiona 46.3 23 0.00077 28.6 4.4 42 77-118 2-44 (120)
127 1j5y_A Transcriptional regulat 46.2 22 0.00076 31.2 4.7 48 84-132 23-70 (187)
128 2vxz_A Pyrsv_GP04; viral prote 46.2 65 0.0022 29.4 7.7 77 82-169 11-87 (165)
129 2qtq_A Transcriptional regulat 46.2 10 0.00036 31.4 2.4 34 80-113 14-52 (213)
130 2iu5_A DHAS, YCEG, HTH-type dh 46.1 10 0.00035 31.6 2.4 30 82-111 13-47 (195)
131 2pg4_A Uncharacterized protein 46.1 17 0.0006 28.0 3.6 43 86-130 19-62 (95)
132 1jhf_A LEXA repressor; LEXA SO 46.0 30 0.001 30.3 5.4 48 83-132 11-59 (202)
133 3tgn_A ADC operon repressor AD 45.8 21 0.00072 28.7 4.1 45 83-131 39-83 (146)
134 3knw_A Putative transcriptiona 45.7 11 0.00036 31.4 2.4 35 80-114 12-51 (212)
135 2rae_A Transcriptional regulat 45.7 11 0.00036 31.5 2.4 33 81-113 16-53 (207)
136 3him_A Probable transcriptiona 45.6 10 0.00036 31.2 2.3 32 80-111 14-50 (211)
137 2dg7_A Putative transcriptiona 45.5 11 0.00037 31.3 2.5 34 81-114 6-44 (195)
138 3dcf_A Transcriptional regulat 45.4 15 0.0005 30.5 3.2 34 81-114 30-68 (218)
139 3r4k_A Transcriptional regulat 45.4 7.6 0.00026 36.0 1.6 51 87-141 11-62 (260)
140 3to7_A Histone acetyltransfera 45.3 16 0.00055 35.8 3.9 39 84-122 195-233 (276)
141 3s5r_A Transcriptional regulat 45.3 12 0.00043 31.0 2.8 33 82-114 10-47 (216)
142 3egq_A TETR family transcripti 45.2 9.1 0.00031 31.0 1.9 32 82-113 4-40 (170)
143 3on2_A Probable transcriptiona 45.1 8.8 0.0003 31.3 1.8 32 81-112 11-47 (199)
144 2zb9_A Putative transcriptiona 44.9 11 0.00037 31.7 2.4 33 82-114 23-60 (214)
145 3o60_A LIN0861 protein; PSI, M 44.7 9.7 0.00033 32.6 2.1 33 81-113 18-56 (185)
146 3bj6_A Transcriptional regulat 44.7 28 0.00095 28.1 4.7 47 83-132 41-87 (152)
147 3rh2_A Hypothetical TETR-like 44.6 11 0.00038 31.7 2.4 33 81-113 2-39 (212)
148 3q0w_A HTH-type transcriptiona 44.5 11 0.00037 32.7 2.4 34 81-114 43-81 (236)
149 3on4_A Transcriptional regulat 44.4 11 0.00039 30.5 2.4 33 81-113 9-46 (191)
150 3qqa_A CMER; alpha-helical, he 44.4 11 0.00039 31.3 2.4 30 82-111 19-53 (216)
151 2fq4_A Transcriptional regulat 44.3 12 0.0004 31.3 2.4 34 81-114 11-49 (192)
152 3bru_A Regulatory protein, TET 44.1 14 0.00048 31.0 2.9 34 81-114 29-67 (222)
153 2dg8_A Putative TETR-family tr 44.0 11 0.00036 31.5 2.1 33 82-114 9-46 (193)
154 2d6y_A Putative TETR family re 44.0 12 0.0004 31.8 2.4 32 82-113 8-44 (202)
155 3npi_A TETR family regulatory 44.0 6.4 0.00022 34.5 0.8 34 81-114 17-55 (251)
156 3deu_A Transcriptional regulat 43.9 28 0.00096 29.4 4.8 49 83-133 54-102 (166)
157 1rkt_A Protein YFIR; transcrip 43.7 12 0.0004 31.6 2.3 32 82-113 12-48 (205)
158 3cwr_A Transcriptional regulat 43.7 11 0.00037 31.0 2.1 34 81-114 16-54 (208)
159 2kif_A O6-methylguanine-DNA me 43.7 24 0.00082 29.8 4.3 57 82-138 3-65 (108)
160 2hr3_A Probable transcriptiona 43.6 29 0.001 27.8 4.7 47 84-132 37-83 (147)
161 1lva_A Selenocysteine-specific 43.6 87 0.003 29.0 8.5 60 84-145 4-63 (258)
162 3anp_C Transcriptional repress 43.3 12 0.00041 31.3 2.4 32 82-113 9-45 (204)
163 3kjx_A Transcriptional regulat 43.2 8 0.00027 35.8 1.4 69 93-166 6-95 (344)
164 3cdl_A Transcriptional regulat 43.1 13 0.00043 31.4 2.5 36 79-114 6-46 (203)
165 3e7q_A Transcriptional regulat 43.1 6.6 0.00023 32.5 0.7 34 81-114 13-51 (215)
166 2oer_A Probable transcriptiona 42.9 14 0.00046 31.6 2.7 33 82-114 24-61 (214)
167 1vi0_A Transcriptional regulat 42.9 11 0.00037 32.1 2.1 33 82-114 8-45 (206)
168 2rdp_A Putative transcriptiona 42.8 1.3E+02 0.0044 24.0 9.3 47 83-132 43-89 (150)
169 1pb6_A Hypothetical transcript 42.8 13 0.00044 30.8 2.5 34 81-114 17-55 (212)
170 2dk8_A DNA-directed RNA polyme 42.7 67 0.0023 26.0 6.6 60 80-141 12-73 (81)
171 2g7u_A Transcriptional regulat 42.7 33 0.0011 31.5 5.4 48 83-132 12-62 (257)
172 3b81_A Transcriptional regulat 42.7 16 0.00054 30.1 3.0 33 81-113 10-47 (203)
173 1bja_A Transcription regulator 42.6 30 0.001 28.6 4.7 43 85-130 19-62 (95)
174 2h09_A Transcriptional regulat 42.6 1.3E+02 0.0045 24.7 8.8 54 87-144 45-98 (155)
175 3frq_A Repressor protein MPHR( 42.6 6.8 0.00023 32.5 0.7 31 84-114 10-45 (195)
176 1lj9_A Transcriptional regulat 42.3 49 0.0017 26.4 5.9 46 84-132 31-76 (144)
177 3txn_A 26S proteasome regulato 42.2 57 0.002 32.7 7.5 66 82-147 301-366 (394)
178 2gen_A Probable transcriptiona 42.1 13 0.00045 31.2 2.4 31 83-113 8-43 (197)
179 3neu_A LIN1836 protein; struct 42.1 76 0.0026 26.2 7.1 57 83-142 18-79 (125)
180 2fbh_A Transcriptional regulat 42.0 31 0.0011 27.5 4.6 48 83-132 38-85 (146)
181 2guh_A Putative TETR-family tr 41.8 14 0.00046 32.0 2.5 33 82-114 39-76 (214)
182 3bhq_A Transcriptional regulat 41.7 13 0.00045 31.4 2.4 34 81-114 11-49 (211)
183 3vib_A MTRR; helix-turn-helix 41.7 13 0.00045 31.3 2.4 34 81-114 9-47 (210)
184 4aci_A HTH-type transcriptiona 41.6 9 0.00031 31.5 1.3 34 81-114 13-51 (191)
185 3qbm_A TETR transcriptional re 41.3 14 0.00047 30.2 2.4 33 82-114 7-44 (199)
186 2ek5_A Predicted transcription 41.2 70 0.0024 26.8 6.8 60 85-147 11-75 (129)
187 2g7s_A Transcriptional regulat 41.0 16 0.00055 29.6 2.7 33 82-114 8-45 (194)
188 2ibd_A Possible transcriptiona 40.9 14 0.00048 31.0 2.5 32 82-113 14-50 (204)
189 3g7r_A Putative transcriptiona 40.8 13 0.00045 31.8 2.3 35 80-114 33-72 (221)
190 2g7g_A RHA04620, putative tran 40.6 13 0.00043 32.5 2.2 31 82-113 11-45 (213)
191 3hta_A EBRA repressor; TETR fa 40.6 14 0.00046 31.8 2.3 32 83-114 29-65 (217)
192 3bja_A Transcriptional regulat 40.4 87 0.003 24.6 7.0 47 83-132 34-80 (139)
193 2hsg_A Glucose-resistance amyl 40.1 12 0.00042 34.2 2.1 24 97-120 2-25 (332)
194 3e3m_A Transcriptional regulat 40.1 15 0.00052 34.1 2.7 27 93-119 8-34 (355)
195 1neq_A DNA-binding protein NER 39.9 21 0.00072 27.4 3.1 30 84-115 11-40 (74)
196 1bia_A BIRA bifunctional prote 39.8 43 0.0015 32.0 6.0 58 82-143 5-62 (321)
197 2qko_A Possible transcriptiona 39.5 15 0.00052 31.0 2.5 31 82-112 28-63 (215)
198 2b0l_A GTP-sensing transcripti 39.5 11 0.00039 30.6 1.6 47 84-133 30-77 (102)
199 2np5_A Transcriptional regulat 39.1 14 0.00047 31.2 2.1 32 82-113 9-45 (203)
200 3bni_A Putative TETR-family tr 39.1 17 0.00059 31.3 2.8 33 82-114 43-80 (229)
201 2f07_A YVDT; helix-turn-helix, 38.9 15 0.00053 30.8 2.4 33 81-113 9-46 (197)
202 2fbi_A Probable transcriptiona 38.7 39 0.0013 26.7 4.7 47 83-132 37-83 (142)
203 1ui5_A A-factor receptor homol 38.7 16 0.00053 31.4 2.4 32 82-113 9-45 (215)
204 3dp7_A SAM-dependent methyltra 38.6 26 0.0009 33.4 4.2 60 81-145 34-93 (363)
205 1ufm_A COP9 complex subunit 4; 38.5 1.5E+02 0.005 23.6 8.0 63 76-138 9-72 (84)
206 2ia2_A Putative transcriptiona 38.4 39 0.0013 31.2 5.2 77 83-164 19-102 (265)
207 1mzb_A Ferric uptake regulatio 38.2 61 0.0021 27.0 6.0 60 80-141 16-83 (136)
208 3ljl_A Transcriptional regulat 37.8 9.8 0.00033 31.1 0.9 33 82-114 14-51 (156)
209 2qib_A TETR-family transcripti 37.7 17 0.00059 31.4 2.5 32 82-113 13-49 (231)
210 2xig_A Ferric uptake regulatio 37.6 74 0.0025 27.1 6.5 62 80-141 25-91 (150)
211 3fiw_A Putative TETR-family tr 37.6 13 0.00045 32.5 1.8 32 82-113 25-61 (211)
212 3g3z_A NMB1585, transcriptiona 37.5 36 0.0012 27.4 4.3 47 83-132 32-78 (145)
213 2xzm_8 RPS25E,; ribosome, tran 37.4 25 0.00086 31.5 3.6 60 79-140 45-106 (143)
214 1r7j_A Conserved hypothetical 37.4 23 0.00077 28.5 3.0 44 86-134 12-55 (95)
215 2xdn_A HTH-type transcriptiona 37.4 16 0.00054 30.7 2.2 32 82-113 11-47 (210)
216 2l02_A Uncharacterized protein 37.4 74 0.0025 26.0 6.0 55 86-143 12-66 (82)
217 1z0x_A Transcriptional regulat 37.3 14 0.00049 32.2 2.0 33 82-114 5-43 (220)
218 3cdh_A Transcriptional regulat 36.9 1.2E+02 0.004 24.6 7.4 47 83-132 44-90 (155)
219 2l01_A Uncharacterized protein 36.9 66 0.0023 26.0 5.6 54 86-142 14-68 (77)
220 1w7p_D VPS36P, YLR417W; ESCRT- 36.8 29 0.00099 36.9 4.5 62 81-145 493-561 (566)
221 2id3_A Putative transcriptiona 36.7 17 0.00059 31.3 2.4 33 82-114 40-77 (225)
222 3geu_A Intercellular adhesion 36.6 10 0.00034 31.2 0.8 33 82-114 3-40 (189)
223 1uly_A Hypothetical protein PH 36.6 33 0.0011 30.7 4.3 51 82-136 20-73 (192)
224 2ras_A Transcriptional regulat 36.4 18 0.0006 30.3 2.3 33 82-114 11-48 (212)
225 2nyx_A Probable transcriptiona 36.3 39 0.0013 28.3 4.5 46 83-131 46-91 (168)
226 3mnl_A KSTR, transcriptional r 36.2 11 0.00037 31.1 1.0 32 82-113 20-56 (203)
227 2nx4_A Transcriptional regulat 36.2 18 0.00063 30.2 2.4 32 82-113 10-46 (194)
228 1uxc_A FRUR (1-57), fructose r 36.0 18 0.00061 27.4 2.1 22 98-119 1-22 (65)
229 2k53_A A3DK08 protein; NESG, C 35.9 33 0.0011 26.9 3.7 40 85-124 17-65 (76)
230 3bjb_A Probable transcriptiona 35.9 18 0.00062 30.8 2.4 33 82-114 22-59 (207)
231 2wui_A MEXZ, transcriptional r 35.8 20 0.00068 30.3 2.6 33 81-113 10-47 (210)
232 2fa5_A Transcriptional regulat 35.8 51 0.0017 26.9 5.0 47 83-132 50-96 (162)
233 3aqt_A Bacterial regulatory pr 35.6 17 0.00059 31.8 2.2 32 81-112 45-81 (245)
234 2bv6_A MGRA, HTH-type transcri 35.6 47 0.0016 26.5 4.7 48 83-133 38-85 (142)
235 3f2g_A Alkylmercury lyase; MER 35.1 17 0.0006 34.2 2.3 52 273-332 24-75 (220)
236 3lsj_A DEST; transcriptional r 35.0 20 0.00067 30.2 2.4 31 82-112 11-47 (220)
237 2qww_A Transcriptional regulat 34.9 49 0.0017 26.8 4.8 46 83-131 42-87 (154)
238 2hyt_A TETR-family transcripti 34.9 19 0.00064 30.2 2.3 31 82-112 12-47 (197)
239 3kkd_A Transcriptional regulat 34.8 16 0.00055 31.4 1.9 31 81-111 34-69 (237)
240 3bpv_A Transcriptional regulat 34.5 47 0.0016 26.2 4.5 47 83-132 30-76 (138)
241 3c7j_A Transcriptional regulat 34.5 82 0.0028 28.6 6.7 42 93-136 45-87 (237)
242 1qpz_A PURA, protein (purine n 34.1 17 0.00059 33.4 2.1 22 98-119 1-22 (340)
243 2w53_A Repressor, SMet; antibi 34.1 20 0.00069 30.3 2.4 32 82-113 11-47 (219)
244 3by6_A Predicted transcription 33.9 1.1E+02 0.0038 25.3 6.9 46 94-142 31-77 (126)
245 2fbq_A Probable transcriptiona 33.9 20 0.00068 31.1 2.3 32 82-113 7-43 (235)
246 2jj7_A Hemolysin II regulatory 33.8 12 0.00042 30.6 0.9 33 82-114 7-44 (186)
247 3c2b_A Transcriptional regulat 33.7 19 0.00065 30.2 2.1 34 81-114 14-52 (221)
248 2hyj_A Putative TETR-family tr 33.4 19 0.00066 30.3 2.1 33 82-114 12-49 (200)
249 2zcx_A SCO7815, TETR-family tr 33.3 20 0.0007 31.3 2.3 33 81-113 22-59 (231)
250 3tqn_A Transcriptional regulat 33.2 26 0.00088 28.5 2.8 60 82-144 13-77 (113)
251 1jko_C HIN recombinase, DNA-in 33.1 40 0.0014 22.1 3.3 37 79-118 6-42 (52)
252 4ham_A LMO2241 protein; struct 33.0 25 0.00087 29.2 2.8 36 94-131 34-70 (134)
253 2i10_A Putative TETR transcrip 33.0 22 0.00075 30.0 2.4 29 86-114 19-48 (202)
254 2np3_A Putative TETR-family re 32.9 11 0.00036 31.9 0.4 31 83-113 35-66 (212)
255 3h5o_A Transcriptional regulat 32.9 9.2 0.00031 35.3 0.0 24 96-119 3-26 (339)
256 3i53_A O-methyltransferase; CO 32.4 70 0.0024 29.7 6.0 55 78-136 21-75 (332)
257 2qc0_A Uncharacterized protein 32.3 63 0.0022 31.7 5.9 66 79-147 294-360 (373)
258 3cjn_A Transcriptional regulat 32.2 2E+02 0.0069 23.3 9.8 47 83-132 53-99 (162)
259 3loc_A HTH-type transcriptiona 32.1 12 0.00042 30.9 0.7 33 82-114 18-55 (212)
260 2o20_A Catabolite control prot 32.1 9.6 0.00033 35.0 0.0 25 96-120 4-28 (332)
261 1b4a_A Arginine repressor; hel 32.0 19 0.00064 31.8 1.8 63 270-333 4-66 (149)
262 1t6s_A Conserved hypothetical 31.9 69 0.0024 28.6 5.6 43 94-136 19-66 (162)
263 2w57_A Ferric uptake regulatio 31.9 83 0.0028 26.8 5.9 60 80-141 15-82 (150)
264 3boq_A Transcriptional regulat 31.9 36 0.0012 27.8 3.5 48 83-132 48-95 (160)
265 3cjd_A Transcriptional regulat 31.8 23 0.00078 29.9 2.3 34 80-113 10-48 (198)
266 2pq8_A Probable histone acetyl 31.8 20 0.00068 35.1 2.1 39 84-122 195-233 (278)
267 3eup_A Transcriptional regulat 31.6 13 0.00044 30.5 0.7 33 82-114 11-48 (204)
268 3ech_A MEXR, multidrug resista 31.5 33 0.0011 27.6 3.2 47 83-132 38-84 (142)
269 1jgs_A Multiple antibiotic res 31.5 1.9E+02 0.0064 22.7 8.8 47 83-132 35-81 (138)
270 3bil_A Probable LACI-family tr 31.1 10 0.00035 35.4 0.0 26 95-120 6-31 (348)
271 2of7_A Putative TETR-family tr 31.1 25 0.00087 31.1 2.6 34 81-114 47-85 (260)
272 2pex_A Transcriptional regulat 31.0 62 0.0021 26.2 4.8 47 83-132 48-94 (153)
273 2k5e_A Uncharacterized protein 30.8 45 0.0015 25.8 3.7 42 85-126 19-69 (73)
274 2gqq_A Leucine-responsive regu 30.8 12 0.0004 32.1 0.3 46 82-130 13-58 (163)
275 3v6g_A Probable transcriptiona 30.6 25 0.00085 30.3 2.4 34 81-114 13-51 (208)
276 2z99_A Putative uncharacterize 30.2 82 0.0028 29.6 6.0 58 79-136 11-72 (219)
277 3eyy_A Putative iron uptake re 30.2 1.1E+02 0.0038 25.9 6.4 61 81-142 18-83 (145)
278 1fp2_A Isoflavone O-methyltran 30.2 1.1E+02 0.0039 28.6 7.1 66 76-143 30-98 (352)
279 1lva_A Selenocysteine-specific 30.1 46 0.0016 30.9 4.3 64 70-134 129-193 (258)
280 3e6m_A MARR family transcripti 30.0 57 0.002 26.9 4.5 48 83-133 54-101 (161)
281 3ni7_A Bacterial regulatory pr 29.9 38 0.0013 29.4 3.4 33 82-114 7-44 (213)
282 3oop_A LIN2960 protein; protei 29.9 61 0.0021 25.9 4.5 47 83-132 38-84 (143)
283 2hku_A A putative transcriptio 29.7 26 0.0009 29.5 2.3 34 81-114 19-56 (215)
284 2l8n_A Transcriptional repress 29.3 18 0.00062 27.5 1.1 23 96-118 8-30 (67)
285 2pjp_A Selenocysteine-specific 29.2 25 0.00085 29.0 2.1 50 82-134 7-56 (121)
286 3lmm_A Uncharacterized protein 29.1 12 0.0004 39.5 0.0 51 82-135 516-566 (583)
287 3u2r_A Regulatory protein MARR 29.1 1.7E+02 0.0058 24.2 7.3 48 83-132 47-95 (168)
288 3jvd_A Transcriptional regulat 28.3 12 0.00042 34.6 0.0 25 95-119 4-28 (333)
289 2oi8_A Putative regulatory pro 28.2 30 0.001 29.9 2.5 36 79-114 13-53 (216)
290 2pi2_A Replication protein A 3 28.2 12 0.00042 35.3 0.0 46 82-129 207-255 (270)
291 2g3b_A Putative TETR-family tr 28.2 16 0.00054 31.2 0.7 32 82-113 3-39 (208)
292 1wi9_A Protein C20ORF116 homol 27.8 64 0.0022 25.8 4.1 60 85-145 10-69 (72)
293 1zg3_A Isoflavanone 4'-O-methy 27.7 57 0.0019 30.8 4.5 67 76-144 24-101 (358)
294 3lsg_A Two-component response 27.6 71 0.0024 24.7 4.4 39 83-121 3-43 (103)
295 2pz9_A Putative regulatory pro 27.1 17 0.0006 31.1 0.8 33 81-113 29-66 (226)
296 2jt1_A PEFI protein; solution 27.0 12 0.00042 29.5 -0.2 29 271-299 4-37 (77)
297 3jw4_A Transcriptional regulat 27.0 37 0.0013 27.5 2.7 47 83-131 42-89 (148)
298 2wte_A CSA3; antiviral protein 26.7 67 0.0023 30.0 4.7 59 83-144 153-211 (244)
299 1jye_A Lactose operon represso 26.7 14 0.00046 34.5 0.0 25 97-121 3-27 (349)
300 2ou2_A Histone acetyltransfera 26.2 31 0.0011 33.8 2.4 38 85-122 194-237 (280)
301 3ke2_A Uncharacterized protein 26.1 69 0.0024 27.8 4.3 46 87-135 25-70 (117)
302 4hbl_A Transcriptional regulat 26.0 82 0.0028 25.6 4.7 46 83-131 42-87 (149)
303 2yu3_A DNA-directed RNA polyme 25.9 87 0.003 25.8 4.7 42 82-123 37-79 (95)
304 2o7t_A Transcriptional regulat 25.7 36 0.0012 28.2 2.5 32 83-114 9-45 (199)
305 3dbi_A Sugar-binding transcrip 25.5 15 0.0005 33.8 0.0 24 97-120 3-26 (338)
306 2gfn_A HTH-type transcriptiona 25.5 31 0.0011 29.3 2.0 34 81-114 8-46 (209)
307 3k0l_A Repressor protein; heli 25.5 47 0.0016 27.5 3.1 47 83-132 47-93 (162)
308 3t72_q RNA polymerase sigma fa 25.2 1.8E+02 0.0061 23.5 6.5 41 77-118 18-60 (99)
309 3la7_A Global nitrogen regulat 25.2 1.1E+02 0.0037 26.8 5.6 49 82-132 164-226 (243)
310 3kfw_X Uncharacterized protein 25.2 1.4E+02 0.0047 28.2 6.6 63 80-147 2-68 (247)
311 3hrs_A Metalloregulator SCAR; 25.2 1.9E+02 0.0067 25.7 7.4 39 94-134 17-55 (214)
312 1hqc_A RUVB; extended AAA-ATPa 25.1 1.3E+02 0.0045 27.2 6.3 60 78-138 244-304 (324)
313 2qvo_A Uncharacterized protein 25.0 54 0.0019 25.3 3.2 43 95-139 28-70 (95)
314 3oio_A Transcriptional regulat 24.8 66 0.0023 25.4 3.8 37 84-120 9-46 (113)
315 2v79_A DNA replication protein 24.5 1.2E+02 0.0042 25.7 5.7 52 94-147 48-105 (135)
316 2ev1_A Hypothetical protein RV 24.5 43 0.0015 31.6 3.0 39 98-141 79-117 (222)
317 3crj_A Transcription regulator 24.4 37 0.0013 28.5 2.3 34 80-113 12-50 (199)
318 3ctp_A Periplasmic binding pro 24.1 16 0.00055 33.5 0.0 25 97-121 2-26 (330)
319 2xub_A DNA-directed RNA polyme 24.1 1.7E+02 0.006 30.0 7.7 61 86-147 364-430 (534)
320 2ozu_A Histone acetyltransfera 24.1 49 0.0017 32.6 3.3 38 84-121 200-238 (284)
321 2k4b_A Transcriptional regulat 24.1 1.3E+02 0.0045 24.3 5.5 58 82-142 35-96 (99)
322 3qyf_A Crispr-associated prote 24.0 41 0.0014 33.6 2.8 66 71-147 197-264 (324)
323 2xub_A DNA-directed RNA polyme 23.9 2E+02 0.0068 29.6 8.1 56 85-141 22-77 (534)
324 1v4r_A Transcriptional repress 23.5 6.2 0.00021 31.3 -2.6 36 94-131 31-67 (102)
325 3eqx_A FIC domain containing t 23.5 1.2E+02 0.004 30.1 6.0 60 84-146 299-359 (373)
326 2g9w_A Conserved hypothetical 23.4 1.1E+02 0.0039 25.1 5.1 53 82-136 9-65 (138)
327 1mgt_A MGMT, protein (O6-methy 23.1 67 0.0023 29.2 3.8 55 81-135 90-149 (174)
328 3mn2_A Probable ARAC family tr 23.1 80 0.0028 24.6 3.9 36 85-120 5-41 (108)
329 2b5a_A C.BCLI; helix-turn-heli 23.1 29 0.001 24.9 1.2 32 81-114 9-40 (77)
330 2v57_A TETR family transcripti 23.0 35 0.0012 27.8 1.8 33 81-114 13-49 (190)
331 4aik_A Transcriptional regulat 23.0 90 0.0031 26.0 4.4 45 84-130 33-77 (151)
332 3c07_A Putative TETR-family tr 22.8 47 0.0016 30.0 2.8 34 81-114 40-78 (273)
333 1bl0_A Protein (multiple antib 22.6 98 0.0034 25.1 4.5 40 81-120 10-50 (129)
334 4b4t_R RPN7, 26S proteasome re 22.6 2.1E+02 0.007 28.2 7.6 69 79-147 329-397 (429)
335 4fx0_A Probable transcriptiona 22.5 78 0.0027 26.3 4.0 46 84-131 35-84 (148)
336 1uxc_A FRUR (1-57), fructose r 22.4 48 0.0017 24.9 2.4 22 78-99 29-50 (65)
337 3s2w_A Transcriptional regulat 22.3 3.1E+02 0.011 22.2 8.9 48 83-133 51-98 (159)
338 2qlz_A Transcription factor PF 22.0 81 0.0028 29.4 4.3 56 80-139 163-218 (232)
339 3oou_A LIN2118 protein; protei 21.9 86 0.0029 24.5 3.9 37 85-121 8-45 (108)
340 4ac0_A Tetracycline repressor 21.8 25 0.00085 30.9 0.8 30 84-113 5-39 (202)
341 2l8n_A Transcriptional repress 21.8 49 0.0017 25.1 2.3 22 78-99 35-56 (67)
342 3gwz_A MMCR; methyltransferase 21.8 48 0.0016 31.7 2.8 49 96-147 70-118 (369)
343 3nqo_A MARR-family transcripti 21.6 78 0.0027 27.2 3.9 49 83-133 42-91 (189)
344 2fi0_A Conserved domain protei 21.5 24 0.00081 27.7 0.5 27 95-121 47-73 (81)
345 1z6r_A MLC protein; transcript 21.4 85 0.0029 30.3 4.5 40 84-124 18-57 (406)
346 2heo_A Z-DNA binding protein 1 21.3 26 0.0009 26.2 0.7 38 260-299 1-38 (67)
347 4b4t_Q 26S proteasome regulato 21.2 2E+02 0.0068 26.2 6.7 69 79-147 338-406 (434)
348 3bwg_A Uncharacterized HTH-typ 21.0 56 0.0019 29.7 3.0 59 82-143 9-72 (239)
349 2frh_A SARA, staphylococcal ac 20.9 93 0.0032 25.0 4.0 46 84-131 39-85 (127)
350 2hxi_A Putative transcriptiona 20.9 47 0.0016 29.7 2.4 34 81-114 28-66 (241)
351 1tbx_A ORF F-93, hypothetical 20.6 2.8E+02 0.0096 20.9 7.8 48 84-134 10-61 (99)
352 1z7u_A Hypothetical protein EF 20.5 1.5E+02 0.005 23.6 5.1 48 80-131 20-68 (112)
353 1z05_A Transcriptional regulat 20.5 92 0.0031 30.5 4.5 41 83-124 40-80 (429)
354 2r3s_A Uncharacterized protein 20.2 65 0.0022 29.6 3.2 57 82-145 26-82 (335)
355 2k9q_A Uncharacterized protein 20.1 80 0.0027 23.0 3.2 32 81-114 1-32 (77)
356 3hsr_A HTH-type transcriptiona 20.1 68 0.0023 25.8 3.0 47 83-132 37-83 (140)
357 2k9m_A RNA polymerase sigma fa 20.0 30 0.001 29.7 0.8 39 85-123 26-65 (130)
358 1okr_A MECI, methicillin resis 20.0 94 0.0032 24.4 3.8 56 83-141 11-71 (123)
No 1
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.19 E-value=0.069 Score=42.61 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHhc-----CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 82 ~~~~~im~Ave~l-----g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+-..+|++.+++. ||.+|+.|+|...|+|...+++.|.+|... |.|+-+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~ 57 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV 57 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence 4567899999998 999999999999999999999999999875 455443
No 2
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=93.95 E-value=0.047 Score=51.69 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhH
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fR 146 (423)
..+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|.+|. .++.+++|+|+. ||-.-|
T Consensus 21 ~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp~S~~ 79 (220)
T 3f2g_A 21 ADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YGLTLR 79 (220)
T ss_dssp HHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SSEESS
T ss_pred hHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ecCCCC
Confidence 456667788888 99999999999999999999999999985 699999999977 765443
No 3
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=93.68 E-value=0.095 Score=39.92 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=43.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G 135 (423)
.+++|++.+++.+..+|+.|+|.+.|++...+.+.|..|-++ |.++.+..|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~--G~I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE--DRVSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEEEETT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEecCCCc
Confidence 578999999998888999999999999999999999999765 446655555
No 4
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=93.44 E-value=0.098 Score=41.07 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
+.++.-+....+..|+|+||+.-|.++++|+.+|..|-+| |.|.
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LR 49 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLR 49 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhh
Confidence 5677788899999999999999999999999999999886 4444
No 5
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.45 E-value=0.16 Score=41.51 Aligned_cols=43 Identities=9% Similarity=0.229 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
+..++|+++++..|.-+..||||..+|++..++.++|.+|-.+
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkE 61 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKE 61 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999999999999999865
No 6
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.18 E-value=0.48 Score=37.99 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-----cCCcEEEE
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYV 140 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs-----e~GdIlY~ 140 (423)
+.+-+|+..+-+.|.++|+.|+|...|++...+.++|..|.++ |-++.. ..|-.+|.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~--GlV~~~~~~~~~~g~~v~~ 79 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ--GFVSYRKTRDKDSGWFIYY 79 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH--TSCEEEEEC---CCCCEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccCCCceEEEE
Confidence 4677899998778878999999999999999999999999876 556655 56777773
No 7
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=89.50 E-value=0.56 Score=37.69 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~-~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~ 144 (423)
++.+++|++.+++.| ..|+.|+|..-|++.. .+++.|..|..+ |-++-...|-.+|.-...
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~LT~~ 71 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEECHH
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEeCHh
Confidence 367899999999998 6899999999999999 999999999876 566655667677765443
No 8
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.40 E-value=1.9 Score=35.83 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHhcCCc-eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec----cCCcEEEEc-ChhhHHHHhhhhHH
Q 014499 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVF-PNNYRAKLAAKSFR 155 (423)
Q Consensus 82 ~~~~~im~Ave~lg~r-vTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs----e~GdIlY~F-P~~fRs~l~~Ks~r 155 (423)
..+-+|+.++.+.+.. +|+.|+|.+.|++...+.+.|..|... |-++-. +.|-..|.| +...... .+-.+
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~--GlV~r~~~~~d~~~~~~~y~~~~~~~~--~~~i~ 101 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK--EILQRSQQNLDGGGYVYIYKIYSKNQI--RNIIQ 101 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEEEECTTSCEEEEEEECCHHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeeCCccCCCcceEEEecCCHHHH--HHHHH
Confidence 3467899999988877 999999999999999999999999864 566532 234466666 3333331 24456
Q ss_pred HhHHHHHHHHhhhhh
Q 014499 156 LKVEPVIDKAKAAAE 170 (423)
Q Consensus 156 ~rlq~~~~k~w~v~~ 170 (423)
..++.|.+.+...+.
T Consensus 102 ~~~~~~~~~~~~~l~ 116 (123)
T 3r0a_A 102 KIVQSWADRLGQELK 116 (123)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777665543
No 9
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.08 E-value=0.74 Score=35.35 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
+.+|++.+.+.+ .+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR 46 (81)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 678999998764 6999999999999999999999999875 66764
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.08 E-value=0.79 Score=36.64 Aligned_cols=49 Identities=27% Similarity=0.395 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 81 ~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.+...+|++.+++.+ .++|+.|+|.+.|++...+++.|..|..+ |.++.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~ 59 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK 59 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence 456788999999887 58999999999999999999999999764 55554
No 11
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=85.39 E-value=1.8 Score=40.34 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=54.2
Q ss_pred cccCCCC-chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 74 v~~~~l~-~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
|++..-. .....+|++.++..| .||+.++|.+-|.+..-|+..|..+-. .|.|=++++++-+|-||.-|
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~g-~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f 214 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEKG-SLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF 214 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHTS-CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred EEcCCCchHHHHHHHHHHHHHCC-CcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 5554332 356788889888754 699999999999999999999988554 68888888777788799655
No 12
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=84.86 E-value=1.2 Score=34.80 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=41.6
Q ss_pred CchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
..+...+|++++++.+ .++|+.|+|.+.|++...+++.|..|-.+ |.++-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~--G~I~~ 63 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK 63 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH--TSEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence 3455688999999988 58999999999999999999999999764 44443
No 13
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=84.10 E-value=1.3 Score=42.34 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=52.1
Q ss_pred ccccCC--CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcChhh
Q 014499 73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY 145 (423)
Q Consensus 73 ~v~~~~--l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIlY~FP~~f 145 (423)
.|.|.. |.+|. .+|++.++.. +.||+.+++...|.+..-|+..|..|.++ |.+=|++ +||-.|=||.-|
T Consensus 144 ~VqSvp~el~~D~-~~vLela~~~-g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~--GllwvD~q~~ge~~Yw~P~lf 216 (234)
T 3cuq_A 144 LIQSVPAELNMDH-TVVLQLAEKN-GYVTVSEIKASLKWETERARQVLEHLLKE--GLAWLDLQAPGEAHYWLPALF 216 (234)
T ss_dssp EEECSCCCCCHHH-HHHHHHHTTT-SEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSCEEESSSSSSCEEECTTSS
T ss_pred EEEeCCCccchHH-HHHHHHHHhc-CcCcHHHHHHHhCCCHHHHHHHHHHHHhC--CCEEEeCCCCCcceeecchhh
Confidence 344443 44443 4477888755 57999999999999999999999997665 6666665 579999999655
No 14
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=83.49 E-value=1.9 Score=32.76 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEe-c-cCCcEEEE
Q 014499 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEV-S-DEGDVLYV 140 (423)
Q Consensus 81 ~~~~~~im~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqV-s-e~GdIlY~ 140 (423)
...|..|++.+.+.+ ..+|+.|++... +++...+-+.|..|... |-++. . ++|...|.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~--Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA--GIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--TSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC--CCeEEEeeCCCceEee
Confidence 456788999998876 789999999999 99999999999999876 44443 2 25566664
No 15
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=82.67 E-value=1.2 Score=36.25 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
...+.+|++.+++.| +|+.|+|.+.|++...+++-|..|..+ |.++..
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~e--G~I~~~ 63 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRS--AMVYSS 63 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHH--TSSEEC
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeC
Confidence 357889999999766 999999999999999999999999765 444443
No 16
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.01 E-value=12 Score=29.40 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc-Chhh
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF-PNNY 145 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdI-lY~F-P~~f 145 (423)
|....|-+|+..+ .. +..|+.|+|...|++...+.+.|..|.. .|-++...+|.- .|.. |+..
T Consensus 18 l~~~~r~~IL~~L-~~-~~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 18 LSDETRWEILTEL-GR-ADQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp TTCHHHHHHHHHH-HH-SCBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECSHHH
T ss_pred hCChHHHHHHHHH-Hc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEEEEEechHHH
Confidence 3445678899999 33 4599999999999999999999999964 577776666654 3433 4443
No 17
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=81.47 E-value=2.3 Score=33.33 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=43.4
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
....|.+|++.+ . +..|++|+|.+.|++...+.+.|..|... |-++... | .|..
T Consensus 29 ~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l 82 (96)
T 1y0u_A 29 TNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV 82 (96)
T ss_dssp SCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred CCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence 345677899999 3 45999999999999999999999999765 7777666 6 5554
No 18
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.38 E-value=2.6 Score=32.22 Aligned_cols=59 Identities=14% Similarity=0.332 Sum_probs=46.3
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd-IlY~F 141 (423)
....+-+|+.++.+ ++..|+.|+|...|++...+.+.|..|. ..|-++...+|. ..|..
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEECSSCEEEEE
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEecCCEEEEEE
Confidence 34667889999865 6689999999999999999999999996 457777665554 44444
No 19
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=81.01 E-value=4.5 Score=32.25 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=47.5
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
|....|-+|+..+. .+..|++|+|...|++...+.+.|..|. ..|-++...+|.-+|..
T Consensus 23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence 44567788999997 3558999999999999999999999997 46788877777755543
No 20
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=80.62 E-value=7.5 Score=31.59 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=47.3
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF 141 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdI-lY~F 141 (423)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|.- .|.-
T Consensus 15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~l 74 (118)
T 3f6o_A 15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCAI 74 (118)
T ss_dssp HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEEE
Confidence 34567889999997 46789999999999999999999999954 577887777764 4444
No 21
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=79.42 E-value=2.4 Score=33.67 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.-.+|++.+++. +++|+.|+|..-|+|...+++.|..|...
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 3 SLIQVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp CHHHHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346789999775 57999999999999999999999999876
No 22
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.11 E-value=2.4 Score=34.58 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.-.+|++.|++. +++|+.|+|..-|+|...+++.|..|...
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 3 SLMEVRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp CTHHHHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346799999775 58999999999999999999999999865
No 23
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=78.62 E-value=1.9 Score=41.11 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=47.7
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC--CcEEEEcChhh
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE--GDVLYVFPNNY 145 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~--GdIlY~FP~~f 145 (423)
..+|++.++.. +.||+.+++...|.+..-|+..|..|.+ .|.+=|+++ ||..|=||.-|
T Consensus 169 ~~~vLe~a~~~-g~vt~~~L~~~lgW~~~Ra~~~L~~l~~--~G~lwvD~q~~~e~~Yw~P~lf 229 (233)
T 1u5t_A 169 QTKILEICSIL-GYSSISLLKANLGWEAVRSKSALDEMVA--NGLLWIDYQGGAEALYWDPSWI 229 (233)
T ss_dssp HHHHHHTTTTT-SCCBHHHHHHHHCCCSHHHHHHHHHHHH--TTSSEEECSSSSSCEEECGGGG
T ss_pred HHHHHHHHHhc-CcCcHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEeCCCCCccceechhhh
Confidence 35667777765 5699999999999999999999999755 577777764 48899999665
No 24
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.02 E-value=4 Score=32.88 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=46.1
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~ 140 (423)
...|-+|+..+.+ +..|+.|+|...|++...+.+.|..|.. .|-++...+|.-+|.
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y 79 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKS--GGLVEARREGTRQYY 79 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEE
Confidence 4567889999864 6789999999999999999999999975 578887777775543
No 25
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=77.66 E-value=2.7 Score=32.76 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd-IlY~F 141 (423)
....|-+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|..
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCCEEEE
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 34567789999876 6899999999999999999999999965 57888777775 44544
No 26
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=76.13 E-value=6 Score=33.24 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc--CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKA--GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAA 151 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~a--GL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs~l~~ 151 (423)
.+.+|++.+.+.| +.|++++|... |++...+.+-|..|..+ |-++....| +|.--..=++.|..
T Consensus 14 ~d~~IL~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~--GLV~~~~rg--~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 14 WDDRILEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH--DLLQPLANG--VYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT--TSEEECSTT--CEEECHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCEEecCCc--eEEECchHHHHHHH
Confidence 4688999998776 89999999999 99999999999999875 666665555 77765544554443
No 27
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=75.44 E-value=1.9 Score=35.39 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=32.7
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHH
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
+.+-+.+|++.+.+.+ +|+.|||..+|+|...+.+.|.
T Consensus 5 ~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 5 IKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 3456678999999887 9999999999999999988773
No 28
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=73.08 E-value=2.1 Score=36.21 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 014499 77 DKLPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 77 ~~l~~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
.+++.+.|++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 48 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGS 48 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHH
Confidence 356778888887775 55688 89999999999998754
No 29
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.03 E-value=16 Score=27.60 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=44.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc---CCcEEE
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLY 139 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse---~GdIlY 139 (423)
....+-+|+..+.+.+ ..|+.|+|...|++...+.+.|..|..+ |-++... +|.-.|
T Consensus 14 ~~~~~~~iL~~L~~~~-~~~~~ela~~l~is~~tvs~~l~~L~~~--gli~~~~~~~~~r~~~ 73 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRR-KAPFSQIQKVLDLTPGNLDSHIRVLERN--GLVKTYKVIADRPRTV 73 (100)
T ss_dssp HSHHHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEECSSSCEEE
T ss_pred CChHHHHHHHHHHhcC-CcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCcceEE
Confidence 3445778898887654 6999999999999999999999999876 6776433 554443
No 30
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.30 E-value=9.1 Score=31.24 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~ 140 (423)
...|-+|+..+.. +..|+.|+|...|++...+.+.|..|-. .|-++...+|.-+|.
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y 75 (118)
T 2jsc_A 20 DPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATYEGRQVRY 75 (118)
T ss_dssp SHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEECSSSEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEEECCEEEE
Confidence 4567889999873 4589999999999999999999999975 688887777764443
No 31
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=70.44 E-value=23 Score=28.93 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHHHH
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKL 149 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs~l 149 (423)
..+.+...++..+..++..|++..+|++.++.++.|.+|.+.. .-+.+..+++..| +..++-..+
T Consensus 3 ~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~l 67 (135)
T 2v9v_A 3 PEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAG-QVTLLRVENDLYA-ISTERYQAW 67 (135)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-CEEEEEETTEEEE-EEHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCC-cEEEEecCCCeEE-ecHHHHHHH
Confidence 3456777888888888779999999999999998888887543 3555544344334 544444433
No 32
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=70.04 E-value=30 Score=27.98 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 85 ~~im~Ave~---lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+++.++.. .+..+|+.|+|.+.|++...+.+.|..|..+ |-++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~--Gli~r~~ 65 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK--GLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC--CCEEecC
Confidence 445555544 4788999999999999999999999999887 7777655
No 33
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=68.04 E-value=7.2 Score=36.41 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=44.0
Q ss_pred HhcCCceeehhhhhhcCCCHHHHHHHHH--------------HHHhhcCCc--------eEeccCCcEEEEcChhhHHHH
Q 014499 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTDGF--------LEVSDEGDVLYVFPNNYRAKL 149 (423)
Q Consensus 92 e~lg~rvTvgDVAa~aGL~l~~Ae~aL~--------------aLAad~~G~--------LqVse~GdIlY~FP~~fRs~l 149 (423)
.....++|+.|||.++|+|..++-++|. +.|.+.|=. |.-..++-|..++|.....-+
T Consensus 4 ~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 3446789999999999999999987774 344444322 555667788888887544334
Q ss_pred hhhhHHHhHHHHHHHHh
Q 014499 150 AAKSFRLKVEPVIDKAK 166 (423)
Q Consensus 150 ~~Ks~r~rlq~~~~k~w 166 (423)
.+.+|..-++.+-+.+.
T Consensus 84 ~~~~~~~~~~gi~~~a~ 100 (366)
T 3h5t_A 84 EDMASVDFLAGVAQAAG 100 (366)
T ss_dssp HSHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 45555444444444433
No 34
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=67.85 E-value=10 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. -|-++...+|.-+|..
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEE
Confidence 34577889999997 35699999999999999999999999954 4788887777755544
No 35
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=66.50 E-value=8.5 Score=30.13 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=46.4
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd-IlY~F 141 (423)
|....|-+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|.-
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 345677889999964 4599999999999999999999999954 46777776665 55544
No 36
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=65.88 E-value=14 Score=30.47 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
...|-+|+..+.+ +..|++|+|...|++...+-+.|..|-. .|-+....+|.-+|..
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~~~gr~~~y~ 101 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 3456678888864 5689999999999999999999999987 6778777777655544
No 37
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=65.53 E-value=5 Score=37.19 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 85 NRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 85 ~~im~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
.|.++.++-+ +..+|+.|+|.+.|++...+-+-|..|.. .|.|+-.++| -|.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~~~--~Y~l 78 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRADG--SYSL 78 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--eEEe
Confidence 4555555544 46899999999999999999999998876 6888887766 6766
No 38
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=65.37 E-value=2.8 Score=35.03 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=23.9
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCH
Q 014499 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l 111 (423)
...|++|++|. .+.|| .+|+.|||.++|++.
T Consensus 6 ~~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 6 RLSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCH
Confidence 34577887665 45698 589999999999875
No 39
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=65.33 E-value=10 Score=29.44 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=41.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.|-.-..+++-++..|+-+-+.++|++-|++.+++-..|..|++.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 355567899999999999999999999999999999999999875
No 40
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=65.31 E-value=3.6 Score=33.75 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=24.0
Q ss_pred chhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
|+.|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 39 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNL 39 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhH
Confidence 345566655 4567786 599999999999997654
No 41
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=65.31 E-value=4.1 Score=33.11 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHh----cCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~Ave~----lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++|..+ .|+ .+|+.|||.++|++...
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t 48 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRST 48 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhh
Confidence 356677766654 587 89999999999998643
No 42
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=65.20 E-value=15 Score=29.04 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
|....|-+|+..+-..| ..|+.|+|...|++...+-+-|..|... -++...+|.-+|..
T Consensus 24 L~~~~Rl~IL~~l~~~~-~~~~~ela~~l~is~stvs~hL~~L~~~---lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHK-ALNVTQIIQILKLPQSTVSQHLCKMRGK---VLKRNRQGLEIYYS 82 (99)
T ss_dssp HCSHHHHHHHHHHHHHS-CEEHHHHHHHHTCCHHHHHHHHHHHBTT---TBEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHHHH---hhhheEeCcEEEEE
Confidence 34456788997776554 5999999999999999999999988765 67766677655543
No 43
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=64.89 E-value=34 Score=31.22 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G 135 (423)
+|++++.+.+...|+.|+|.+.|++...+.+-|..|.. .|.++-.++|
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~ 59 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDK 59 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEECCCC
Confidence 57788877777899999999999999999999998876 5777766444
No 44
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=64.51 E-value=4 Score=33.32 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=25.7
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|. .+.|+ .+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
Confidence 34567776665 45586 799999999999987654
No 45
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=64.36 E-value=3.3 Score=34.68 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=27.5
Q ss_pred CCCchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHH
Q 014499 78 KLPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (423)
Q Consensus 78 ~l~~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (423)
+.+.+.|++|++| +.+.|+. +|+.|||.++|++..
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 48 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKG 48 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTT
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHH
Confidence 4566778888766 5578886 999999999998753
No 46
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=64.26 E-value=8.1 Score=32.52 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.+.+|++++.+. .+.|..|+|.+.|++...+.+-|..|-..
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889988775 58999999999999999999999999765
No 47
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=63.99 E-value=10 Score=30.55 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 81 ~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
++.-+++.+++..++ ...|.-++|.+-|++..++.+.|-.|... |-+.+..+
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk--G~V~~~~~ 64 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE--DTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC--CCEecCCC
Confidence 478899999999986 44899999999999999999999999864 55554443
No 48
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=63.78 E-value=3.8 Score=34.56 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=25.1
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~A----ve~lg~rvTvgDVAa~aGL~l~~A 114 (423)
.|++|++| +.+.|+.+|+.|||.++|++....
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tl 49 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTV 49 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Confidence 45566554 556799999999999999987654
No 49
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=63.65 E-value=3.8 Score=34.09 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=25.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~ 40 (190)
T 3vpr_A 3 TTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAAL 40 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 345666555 7788985 89999999999997654
No 50
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=62.63 E-value=12 Score=28.49 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
+-+++..+-+.+..+|+.|+|...|++...+.+.|..|.. .|-++...
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~~ 70 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEeec
Confidence 3445555555567899999999999999999999999965 46666543
No 51
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=62.07 E-value=24 Score=28.13 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~ 143 (423)
..+-+|+.++.+ ...|+.|+|...|++...+.+.|..|-. -|.+....+|.-+|..+.
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEc
Confidence 456788999887 4689999999999999999999999988 567766666665554433
No 52
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=61.93 E-value=21 Score=25.39 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEecc-CCcEEEE
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYV 140 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqVse-~GdIlY~ 140 (423)
.|..++..+-+.+..+|+.|++... +++...+.+.|..+ |-+++.. +|...|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l-----g~v~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL-----HLVKVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH-----TCEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc-----CCEEEecCCCceeee
Confidence 4555555555557789999999999 99999999999944 4456654 4555564
No 53
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=61.58 E-value=4.3 Score=33.52 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=24.6
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgt 38 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGA 38 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHH
Confidence 456666554 567798 69999999999998754
No 54
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=60.77 E-value=10 Score=31.74 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCce
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFL 129 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~L 129 (423)
.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|... |-+
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i 51 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESR--GVV 51 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCE
Confidence 456899999754 58999999999999999999999999653 444
No 55
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=60.74 E-value=35 Score=27.85 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=40.5
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD 136 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd 136 (423)
...|-+|+..+.+. +..|++|+|...|++...+.+-|..|. ..|-++...+|.
T Consensus 41 ~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr 93 (122)
T 1u2w_A 41 DENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGK 93 (122)
T ss_dssp SHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----
T ss_pred CHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECC
Confidence 34566888888764 468999999999999999999999998 467777766665
No 56
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=60.74 E-value=4.5 Score=33.70 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.3
Q ss_pred hhHHHHH----HHHhcCCceeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~----Ave~lg~rvTvgDVAa~aGL~l~~A 114 (423)
.|++|++ .+.+.||.+|+.|||.++|++....
T Consensus 16 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tl 51 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTL 51 (194)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHH
Confidence 3556655 4667899999999999999997654
No 57
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=60.51 E-value=7.9 Score=32.28 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
+.+.+|++.+.+ +.+.|..|+|.+.|++...+.+.|..|...
T Consensus 3 ~~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 3 EIDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346789998865 458999999999999999999999999765
No 58
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=60.49 E-value=4.1 Score=34.90 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=26.1
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 80 ~~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
+++.|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 3 ~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 41 (228)
T 3nnr_A 3 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGN 41 (228)
T ss_dssp -CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred CchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCcc
Confidence 45667777665 5667986 9999999999998654
No 59
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=60.30 E-value=10 Score=33.28 Aligned_cols=42 Identities=7% Similarity=0.276 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
+.+.+|++++.+. .+.|..|+|.+.|++...+.+-|..|-.+
T Consensus 27 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456889999775 58999999999999999999999999765
No 60
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=59.27 E-value=11 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.+.+|++++.+. .+.|..|+|.+.|+|...+.+.|..|-..
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456889988765 68999999999999999999999999665
No 61
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.48 E-value=12 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
...+|++.+.+ +.++|..|+|.+.|++...+.+.|..|..+ |.++
T Consensus 10 ~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKL--GIIR 54 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH--TSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEE
Confidence 45588998876 578999999999999999999999999765 4443
No 62
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.21 E-value=49 Score=26.08 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 39 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~--glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGETG-PCPQNQLGRLTAMDAATIKGVVERLDKR--GLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT--TCEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 3457899998776 7999999999999999999999999877 667654
No 63
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=58.00 E-value=14 Score=27.92 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEc
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVF 141 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIlY~F 141 (423)
..+-+|+..+.+. +.+|+.|+|...|++...+.+.|..|... |.++... ++...|.+
T Consensus 20 ~~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~--glv~~~~~~~~r~~~~~ 78 (109)
T 1sfx_A 20 PSDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKR--GFVRREIVEKGWVGYIY 78 (109)
T ss_dssp HHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEeecCCceEEEE
Confidence 4567789999765 45999999999999999999999999665 6666543 45555544
No 64
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.00 E-value=27 Score=29.06 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-e-ccCCcEEEEc
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-V-SDEGDVLYVF 141 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~Lq-V-se~GdIlY~F 141 (423)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|... |-++ + .++|...|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~--Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS--GLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT--TSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC--CCEEEEEeCCCceEEEe
Confidence 356888999999988899999999987 99999999999998865 3333 2 3467788875
No 65
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=57.71 E-value=12 Score=30.65 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=35.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.+.+|++.+.+. .+.|..|+|.+.|++...+.+.|..|..+
T Consensus 5 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 5 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889988754 57899999999999999999999999765
No 66
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=57.37 E-value=5.4 Score=32.89 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.4
Q ss_pred chhhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||.+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tl 45 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSM 45 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHH
Confidence 4566777665 556798899999999999987654
No 67
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=57.32 E-value=5 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 85 ~~im~Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+..++.+.+.|+ .+|+.|||.++|++....
T Consensus 14 ~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 44 (192)
T 2zcm_A 14 DNAITLFSEKGYDGTTLDDISKSVNIKKASL 44 (192)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCChHHH
Confidence 344555677898 599999999999987653
No 68
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=57.28 E-value=32 Score=27.27 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+-+|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++...
T Consensus 32 ~~~~iL~~l~~~~-~~~~~ela~~l~is~~~vs~~l~~L~~~--gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDA-PLHQLALQERLQIDRAAVTRHLKLLEES--GYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEecC
Confidence 3456888888765 6999999999999999999999999886 6676543
No 69
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=56.46 E-value=8 Score=36.29 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
+|++++...+..+|+.|+|.++||+...+-+=|..|.. .|.|+-+++| -|.-
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~~~--~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSADG--TLRI 85 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECTTS--EEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--cEEe
Confidence 46788888888899999999999999999999999976 4788877665 4665
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=56.17 E-value=14 Score=30.86 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
.+.+|++.+.+. .+.|..|+|.+.|++...+.+.|..|... |-++
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i~ 50 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESF--GIIK 50 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCeE
Confidence 455889998764 67999999999999999999999999654 4443
No 71
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=55.89 E-value=74 Score=25.13 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec---cCCcEEEEcChh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGDVLYVFPNN 144 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs---e~GdIlY~FP~~ 144 (423)
..-+++..+......+|+.|+|...|++...+-+.|..|.. .|.++.. ++....|..+.+
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~~~~~d~r~~~~~~~~ 89 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKVWIKGERKNYYEAVDG 89 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCSSCEEEECCH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCCceEEEeecch
Confidence 34567888853456799999999999999999999998876 4777764 456677888755
No 72
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=55.68 E-value=6.2 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 44 (183)
T 1zk8_A 8 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPS 44 (183)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchH
Confidence 346666665 5556876 9999999999998754
No 73
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=55.12 E-value=6.3 Score=33.05 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=25.8
Q ss_pred chhhHHHHHHHH----hcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Ave----~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
.+.|++|++|.. +.|+. +|+.|||.++|++....
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 54 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLI 54 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHH
Confidence 346777766654 55985 99999999999987654
No 74
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.52 E-value=12 Score=33.91 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAa 123 (423)
-+..|++.+++ .+.+|+.|+|..-|.|..+.++.|.+|.-
T Consensus 13 R~~~i~~~l~~-~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDS-NPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-CCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 45567777776 56899999999999999999999998853
No 75
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=54.49 E-value=5.1 Score=33.45 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~A----ve~lg~rvTvgDVAa~aGL~l~~A 114 (423)
.|++|++| +.+.||.+|+.|||.++|++....
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~ 52 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSATL 52 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHH
Confidence 45666665 556799999999999999997654
No 76
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=54.21 E-value=17 Score=31.80 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
+.+.+|++++.+. .+.|..|+|.+.|++...+.+.|..|-.+
T Consensus 17 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 17 DLDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456899999775 58999999999999999999999999554
No 77
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.91 E-value=16 Score=31.08 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
.+.+|++++.+. .+.|..|+|.+.|++...+.+-|..|-..
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889988765 57999999999999999999999999654
No 78
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=53.76 E-value=27 Score=26.24 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAad~~G~LqVse~GdIlY 139 (423)
..+..||+++.+ ...+|+.|++...+ ++...+..-|..|... |.++...+|.-.+
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k--Glv~r~~~gr~~~ 67 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK--GALNHHKEGRVFV 67 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC--CCeEEEecCCEEE
Confidence 456789999988 56899999999886 7899998888888764 7787777776433
No 79
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=53.45 E-value=8.6 Score=29.98 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHH
Q 014499 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALA 122 (423)
Q Consensus 85 ~~im~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (423)
..|++.++..|| +.++.++|...|++.+++++.|..+-
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 567899999999 78999999999999999999987664
No 80
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=53.24 E-value=7.1 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=25.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (203)
T 3f1b_A 14 VREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPML 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHH
Confidence 345666655 556697 899999999999987654
No 81
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=53.22 E-value=14 Score=33.83 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
+|++++.+.+...|+.|+|.+.|++...+-+-|..|.. .|.++-.+++. -|.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~~-~Y~l 62 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE--EFLVEALGPAG-GFRL 62 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT--TTSEEECGGGC-EEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeCCCC-eEEE
Confidence 46777777777899999999999999999999998875 47777655422 3544
No 82
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=53.12 E-value=8.4 Score=31.23 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=24.7
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 4566666654 567986 9999999999998754
No 83
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=53.07 E-value=14 Score=32.52 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
-|.+.+++.|+-.|+.|+|...|++...+.+-|.+|..+ |.|+-.
T Consensus 13 ~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~--G~i~~~ 57 (196)
T 3k2z_A 13 FIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK--GYIERK 57 (196)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEECC
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC--CCEEec
Confidence 344555678999999999999999999999999988764 566544
No 84
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.90 E-value=10 Score=32.27 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCC---CHHH-HHHHHHHHHhhc
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNE-AQKALQALAADT 125 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL---~l~~-Ae~aL~aLAad~ 125 (423)
.++|++|++.++ +.-.|+.|+|...|+ +..+ +-..|..+|--.
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl 56 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIA 56 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHH
Confidence 478999999997 789999999999999 7777 778888877654
No 85
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=52.70 E-value=62 Score=25.93 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=40.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
+-.|+..+.+.+. |+.|+|...|++...+-+.|..|..+ |.++-..
T Consensus 39 ~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~--Glv~r~~ 84 (144)
T 3f3x_A 39 DFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAK--GLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHC--CCEEecc
Confidence 4578999988877 99999999999999999999999988 7777543
No 86
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=52.24 E-value=5.4 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred chhhHHHHHHH-H----hcC-CceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAV-D----ACN-RRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Av-e----~lg-~rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|. + +.| ..+|+.|||.++|++....
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 62 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAAL 62 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHH
Confidence 35678888883 3 346 4699999999999987654
No 87
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=52.23 E-value=13 Score=31.84 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~ 125 (423)
...+|++++.+ +.|+|..|+|.+.|+|...+.+-|..|-.+-
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45678888865 5689999999999999999999999997654
No 88
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=52.05 E-value=7.5 Score=34.14 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=26.6
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 014499 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 80 ~~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..+.|++|++|. .+.|| .+|+.|||.++|++....
T Consensus 41 ~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 80 (255)
T 3g1o_A 41 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTF 80 (255)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHH
Confidence 345677776665 45688 799999999999987543
No 89
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=51.91 E-value=8.5 Score=31.86 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=24.6
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
.|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAI 51 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceee
Confidence 45556554 5678986 99999999999987654
No 90
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=51.73 E-value=4.7 Score=34.06 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 014499 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 79 l~~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
++++.|++|++|. .+.|| .+|+.|||.+||++...
T Consensus 2 ~~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~Agvskgt 41 (202)
T 2id6_A 2 HMLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGL 41 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHH
T ss_pred CchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 3466778887664 56787 69999999999998643
No 91
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=51.51 E-value=7.6 Score=31.80 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+.|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHH
Confidence 455666554 677898 899999999999998654
No 92
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=51.42 E-value=7.7 Score=32.09 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 48 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGT 48 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchh
Confidence 3456666554 677898 69999999999998643
No 93
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=51.18 E-value=9.7 Score=31.20 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=25.0
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
Confidence 3455666555 6667976 99999999999987643
No 94
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=51.16 E-value=8.6 Score=31.59 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.7
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
Confidence 456777665 5566987 99999999999987654
No 95
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=51.16 E-value=4.5 Score=32.99 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=24.8
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~Av----e~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
+.|++|++|. .+.|+. +|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATL 45 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHH
Confidence 4566666654 556875 99999999999987654
No 96
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=50.65 E-value=26 Score=28.11 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQLYLDSGTLTPMLKRMEQQ--GLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTTTCCHHHHHHHHHHHHHH--TSEECC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCcCcHHHHHHHHHHC--CCEEec
Confidence 4567899998876 8999999999999999999999999987 666653
No 97
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=50.32 E-value=19 Score=28.98 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 83 ~~~~im~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
.+-.|++.++..| ..+|..|+|.+++|+..++.+.|..|-. -|-++
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 4568899999865 4899999999999999999999999955 57776
No 98
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=50.31 E-value=23 Score=31.75 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCCCch-hhHHHHHHHHhcCCc----eeeh-h-hhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEE
Q 014499 77 DKLPAD-VRNRAMDAVDACNRR----VTIG-D-VAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLY 139 (423)
Q Consensus 77 ~~l~~~-~~~~im~Ave~lg~r----vTvg-D-VAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIlY 139 (423)
-+++++ ...+|++.++..++. +|.. + +|.+.|.+..-|+..|..+-. .|.|=+++ +| +-|
T Consensus 93 ~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~--~G~l~~D~~~~G-~~y 161 (169)
T 1u5t_B 93 TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVD--EGDLLIDKQLSG-IYY 161 (169)
T ss_dssp ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH--HTSEEEEECSSC-EEE
T ss_pred eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCc-ceE
Confidence 455555 346889999988777 9999 9 999999999999999998665 46666665 45 434
No 99
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=49.87 E-value=24 Score=28.22 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+. +..+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 83 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM--GLVVRV 83 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC--CCEEee
Confidence 4556788887 778999999999999999999999999987 777654
No 100
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=49.86 E-value=33 Score=27.29 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=41.5
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+...+ ..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK--KLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4567899998887 79999999999999999999999999876 777754
No 101
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=49.70 E-value=8.3 Score=31.55 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=23.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l 111 (423)
..|++|++| +.+.|+ .+|+.|||.++|++.
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCG
T ss_pred cCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 345566555 566898 799999999999874
No 102
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=49.53 E-value=7.6 Score=31.62 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
Confidence 3456667655 455688 799999999999987653
No 103
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=49.47 E-value=7.8 Score=33.47 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHHH
Q 014499 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 83 ~~~~im~Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
.-+..++.+.+.||. +|+.|||.++|++...
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 66 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSS 66 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhH
Confidence 344556666778985 9999999999998754
No 104
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=49.23 E-value=28 Score=33.25 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=52.5
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-cCCcEEEEcChhhHHHH
Q 014499 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPNNYRAKL 149 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs-e~GdIlY~FP~~fRs~l 149 (423)
-|-.+++-.|.+.+.+.++.+|+.|+|+++|++..-.++=|+.|++ -|.|++. +.|+-.|.=.+--+.-|
T Consensus 24 ~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~~~~~~~y~~t~~s~~~l 94 (353)
T 4a6d_A 24 VLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVS--LKLLKVETRGGKAFYRNTELSSDYL 94 (353)
T ss_dssp HHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHH--CCCEEEeccCccceeeCCHHHHHHh
Confidence 3444556678888888888899999999999999999888888876 4677654 56777887665444433
No 105
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.22 E-value=1e+02 Score=24.78 Aligned_cols=47 Identities=6% Similarity=0.167 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++...
T Consensus 39 ~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKHG-SLKVSEIAERMEVKPSAVTLMADRLEQK--NLIARTH 85 (155)
T ss_dssp HHHHHHHHHHHS-EEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeecC
Confidence 456888888755 6999999999999999999999999877 7776543
No 106
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=49.10 E-value=21 Score=29.22 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 86 ~im~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+||..+.+. +..+|+.|+|.+.|++...+++.|..|.. .|-++..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~--~Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN--AGLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEec
Confidence 345555554 56799999999999999999999999976 3556544
No 107
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.03 E-value=1.1e+02 Score=24.95 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 45 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFG-PKKMKEIAEFLSTTKSNVTNVVDSLEKR--GLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4567899998876 6999999999999999999999999886 666654
No 108
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=49.02 E-value=21 Score=28.38 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+. .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 83 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK--KLLYRK 83 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC--CCEEee
Confidence 35678899988875 7999999999999999999999999876 566543
No 109
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=48.83 E-value=9 Score=31.54 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=25.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tl 45 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNF 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHH
Confidence 456666555 567897 799999999999987654
No 110
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=48.69 E-value=11 Score=31.62 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=24.3
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~ 112 (423)
..|++|++ .+.+.|| .+|+.|||.++|++..
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~ 49 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSKS 49 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcC
Confidence 45677766 5667897 5999999999998753
No 111
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.41 E-value=37 Score=28.76 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEe--ccCCcEEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEV--SDEGDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqV--se~GdIlY~F 141 (423)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|... |-+.. .++|...|..
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~--Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES--GLVKELTYGDASSRFDF 86 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT--TSEEEECCTTSCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC--CCEEEEeeCCCceEEEC
Confidence 3567888999999988899999999987 89999999999999875 34432 2356677765
No 112
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.07 E-value=98 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~~la~~l~~s~~tvs~~l~~L~~~--glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFEG-PKRPGELSVLLGVAKSTVTGLVKRLEAD--GYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 3567888888754 6999999999999999999999999886 777654
No 113
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=47.82 E-value=22 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~r~ 87 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER--GLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT--TSEEC-
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456788899888878999999999999999999999999875 677643
No 114
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=47.77 E-value=10 Score=31.66 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=26.5
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 48 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASL 48 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHH
Confidence 4556677665 677898 599999999999987543
No 115
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=47.73 E-value=8.4 Score=32.04 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 63 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTL 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHH
Confidence 3456666555 567797 899999999999987654
No 116
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=47.51 E-value=10 Score=30.82 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=23.2
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~ 112 (423)
..|++|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 41 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPKG 41 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSC
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCch
Confidence 44556654 5667888 6999999999998753
No 117
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=47.37 E-value=9 Score=32.33 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.2
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||.+|+.|||.++|++....
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~ti 48 (224)
T 1t33_A 12 QAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAI 48 (224)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHH
Confidence 345566554 667898899999999999987653
No 118
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=47.20 E-value=26 Score=22.62 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=30.9
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHH
Q 014499 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
+|+++.+..|+...+ ...|..+||...|++...+.+-+..
T Consensus 5 ~l~~~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 577777777776653 3479999999999999999776653
No 119
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.98 E-value=48 Score=27.94 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
...|..|++++.+.+.-+|+.||..+. ++++..+=+.|..|...-==+=-..++|...|..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 356888999999988899999998865 7999999999999987643322233477788876
No 120
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=46.95 E-value=5.9 Score=30.74 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCeEeeeeccCccCCCCCCCCchhhhhHhhh
Q 014499 274 KLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLR 314 (423)
Q Consensus 274 k~Ig~~Ir~N~GvV~AEqlAPylD~~~~~~~E~y~LpvL~r 314 (423)
+.+..|||+|||++..+.++...+++. +.++-+|.|
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~k-----deV~~~Lrr 48 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEK-----QEVVKLLEA 48 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCH-----HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCH-----HHHHHHHHH
Confidence 678999999999999999999999743 334455544
No 121
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=46.89 E-value=28 Score=28.11 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=39.6
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 42 ~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 87 (148)
T 3nrv_A 42 EWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
T ss_dssp HHHHHHHHHHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 456888998877 8999999999999999999999999987 777654
No 122
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=46.85 E-value=33 Score=24.41 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
.++-.++++.| |+.++|.+.|++-...-+-+. ...+-.|+.++.|+.+|.-
T Consensus 4 ~~l~~~~~~~g---s~~~~A~~lgis~~~vs~~~~---~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 4 IPLSKYLEEHG---TQSALAAALGVNQSAISQMVR---AGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp EEHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHH---TTCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHcC---CHHHHHHHHCcCHHHHHHHHc---CCCCCCeEEccCceEehHh
Confidence 35667788887 899999999999877766552 1223334449999999864
No 123
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=46.77 E-value=12 Score=31.22 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=24.3
Q ss_pred hhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 41 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGL 41 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHH
Confidence 4555655 4667798 699999999999987543
No 124
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.50 E-value=12 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=25.6
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 9 ~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhH
Confidence 3566777665 556788 699999999999987653
No 125
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=46.45 E-value=99 Score=25.01 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
+..+|+.|+|...|++...+.+.|..|.. .|-++-..+
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~~~ 57 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYEKY 57 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEETT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEeeC
Confidence 45799999999999999999999999987 477766543
No 126
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.28 E-value=23 Score=28.56 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCCchhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHH
Q 014499 77 DKLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKAL 118 (423)
Q Consensus 77 ~~l~~~~~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL 118 (423)
+.+..+.-.++++.+++. ....|+.|+|...|++...-++.+
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~f 44 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKL 44 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHH
Confidence 455666778888888876 678999999999999998765443
No 127
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=46.22 E-value=22 Score=31.20 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=38.5
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+.+|++.+.+.+..+|+.|+|.+.|+|...+++.|..|-+ .|--++.+
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~~ 70 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEE
Confidence 4567888887776799999999999999999999999975 33325543
No 128
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=46.21 E-value=65 Score=29.39 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHHHHhhhhHHHhHHHH
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPV 161 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs~l~~Ks~r~rlq~~ 161 (423)
+.+.+|++-+. -+-+|+.++|-..|||=.+|+-.|..|+.| |-++-=+-|...|.==. .+ .+..++..+
T Consensus 11 erk~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE--G~V~~Vk~GK~ayw~L~------~s-~y~~kV~di 79 (165)
T 2vxz_A 11 VRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKE--GRVTRVAFGNVALVCLS------MD-QYRQLVDGM 79 (165)
T ss_dssp HHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEESC------HH-HHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhc--CceEEEEEccEEEEEec------HH-HHHHHHHHH
Confidence 45678888888 889999999999999999999999988765 45555567888887542 12 222367777
Q ss_pred HHHHhhhh
Q 014499 162 IDKAKAAA 169 (423)
Q Consensus 162 ~~k~w~v~ 169 (423)
++-+|..+
T Consensus 80 lrel~~~l 87 (165)
T 2vxz_A 80 IREVERLV 87 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 129
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=46.18 E-value=10 Score=31.36 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=26.0
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 014499 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 80 ~~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
....|++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t 52 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSAL 52 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhh
Confidence 345677776654 55688 79999999999998754
No 130
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=46.09 E-value=10 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=23.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l 111 (423)
..|++|++| +.+.|+. +|+.|||.++|++.
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCH
Confidence 356777665 5567885 99999999999874
No 131
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.05 E-value=17 Score=28.02 Aligned_cols=43 Identities=7% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHH-HHHHHHHHHhhcCCceE
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNE-AQKALQALAADTDGFLE 130 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~-Ae~aL~aLAad~~G~Lq 130 (423)
.++..+.+.++.+|+.|+|...|++... +-+.|..|..+ |.++
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~--Glv~ 62 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA--GLVK 62 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT--TSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC--CCee
Confidence 3566777888789999999999999999 99999999765 6666
No 132
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=45.96 E-value=30 Score=30.27 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=38.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCC-HHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLK-LNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~-l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.-++|-++.++.|+..|..|+|.+.|++ ...+.+-+..|+.. |.|.++
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~--~~l~~~ 59 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK--GVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC--CCceeC
Confidence 4456777777888888999999999999 88888888888874 567765
No 133
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=45.82 E-value=21 Score=28.67 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.+-+|+..+...+ +|+.|+|...|++...+.+.|..|..+ |-++-
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~--Glv~r 83 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKE--GMLET 83 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeEe
Confidence 4567899998877 999999999999999999999999764 55654
No 134
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=45.72 E-value=11 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=26.9
Q ss_pred CchhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 80 PADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 80 ~~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 51 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSF 51 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred chhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHH
Confidence 34566777665 566787 799999999999997654
No 135
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=45.67 E-value=11 Score=31.46 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 53 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRT 53 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcch
Confidence 4566777665 556798 59999999999998653
No 136
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=45.57 E-value=10 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=25.2
Q ss_pred CchhhHHHHHHH----HhcCCc-eeehhhhhhcCCCH
Q 014499 80 PADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKL 111 (423)
Q Consensus 80 ~~~~~~~im~Av----e~lg~r-vTvgDVAa~aGL~l 111 (423)
..+.|++|++|. .+.|+. +|+.|||.++|++.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCc
Confidence 456777887665 467875 99999999999874
No 137
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=45.54 E-value=11 Score=31.25 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 44 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSY 44 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHH
Confidence 4556777665 5567886 99999999999987543
No 138
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=45.44 E-value=15 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
Confidence 4556677655 556797 599999999999987654
No 139
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=45.35 E-value=7.6 Score=36.01 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 014499 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (423)
Q Consensus 87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~-GdIlY~F 141 (423)
|++++.+.+..+|+.|+|.++||+...+-+-|..|.+ .|.|+-+++ |. |.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~~~~--Y~l 62 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEGARS--YRL 62 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSSSSE--EEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCCCCc--EEc
Confidence 4444444557899999999999999999999999876 477776654 43 555
No 140
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=45.27 E-value=16 Score=35.78 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=35.6
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHH
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (423)
+..|++.+.+.+..+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 578899999999999999999999999999999998873
No 141
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=45.26 E-value=12 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.6
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMI 47 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHH
Confidence 456666555 6778976 99999999999987654
No 142
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=45.23 E-value=9.1 Score=31.02 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchh
Confidence 456677665 556788 59999999999998654
No 143
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=45.10 E-value=8.8 Score=31.32 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=21.9
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~ 112 (423)
.+.|++|++| +.+.|+. +|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 47 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHA 47 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChH
Confidence 4566777665 5567986 899999999998754
No 144
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=44.89 E-value=11 Score=31.75 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.2
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++ .+.+.|| .+|+.|||.++|++....
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 60 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTL 60 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHH
Confidence 34566655 5667898 799999999999987653
No 145
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=44.72 E-value=9.7 Score=32.61 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=25.0
Q ss_pred chhhHHHHHHHH-----hcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~Ave-----~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++|.. +.|+ .+|+.|||.+||++...
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t 56 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRAT 56 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHH
Confidence 355678888744 4465 69999999999998643
No 146
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=44.71 E-value=28 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~~vs~~l~~Le~~--Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTP-GATAPQLGAALQMKRQYISRILQEVQRA--GLIERR 87 (152)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeec
Confidence 4567888998766 7999999999999999999999999876 666654
No 147
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=44.65 E-value=11 Score=31.68 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
++.|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 2 ~~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t 39 (212)
T 3rh2_A 2 MKTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGN 39 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 3456666554 5678987 9999999999998754
No 148
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=44.55 E-value=11 Score=32.70 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=26.3
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tl 81 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTF 81 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHH
Confidence 4566677665 556698 899999999999987643
No 149
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=44.44 E-value=11 Score=30.52 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=25.5
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
.+.|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t 46 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTAS 46 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 3466777655 5677985 9999999999998754
No 150
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=44.40 E-value=11 Score=31.28 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=22.6
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCH
Q 014499 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKL 111 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~r-vTvgDVAa~aGL~l 111 (423)
..|++|++ .+.+.|+. +|+.|||.++|++.
T Consensus 19 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 19 ARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCH
Confidence 34556654 45678976 99999999999874
No 151
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=44.26 E-value=12 Score=31.31 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.5
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tl 49 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATI 49 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHH
Confidence 3557777766 456787 699999999999998654
No 152
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=44.07 E-value=14 Score=30.99 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=26.0
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~ 67 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSF 67 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchh
Confidence 4556776655 566897 799999999999987644
No 153
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=43.99 E-value=11 Score=31.49 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=24.9
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 46 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSM 46 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhh
Confidence 455666555 566788 799999999999986543
No 154
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.99 E-value=12 Score=31.78 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 44 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQL 44 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 456666655 556798 89999999999998754
No 155
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=43.97 E-value=6.4 Score=34.49 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 17 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 55 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMI 55 (251)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHH
Confidence 3456677665 555697 799999999999987654
No 156
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=43.90 E-value=28 Score=29.38 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-..
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--GlV~r~~ 102 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK--GLISRQT 102 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC--CCEEeeC
Confidence 356789999887788999999999999999999999999875 7776543
No 157
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.69 E-value=12 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gt 48 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGG 48 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcch
Confidence 456667665 566798 69999999999998754
No 158
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=43.65 E-value=11 Score=31.01 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 54 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTL 54 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHH
Confidence 4567777655 5567885 99999999999987643
No 159
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=43.65 E-value=24 Score=29.77 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHhc--CCceeehhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeccCCcEE
Q 014499 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (423)
Q Consensus 82 ~~~~~im~Ave~l--g~rvTvgDVAa~aGL~--l~~Ae~aL~a--LAad~~G~LqVse~GdIl 138 (423)
+.+.+|.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...+|==|..+|.+-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~ 65 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS 65 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCS
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCC
Confidence 5788999999998 6668889999999984 4444455544 344678999999999885
No 160
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.59 E-value=29 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.-.|+..+...+..+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~--glv~r~ 83 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG--GLIVRH 83 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCEeeC
Confidence 34678888874567999999999999999999999999886 666644
No 161
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=43.57 E-value=87 Score=29.01 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=42.5
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
.+.+...++..+..++..|++..+|++.++.++.|..|.+.. .-+.+..+++..| +..++
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~-~~~~~~~~~~~~~-~~~~~ 63 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAG-QVTLLRVENDLYA-ISTER 63 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-SEEEEEETTEEEE-EEHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCC-CEEEeccCCccEE-EcHHH
Confidence 455777788888888779999999999999998888887543 3555544344334 43333
No 162
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=43.27 E-value=12 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.||. +|+.|||.++|++...
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt 45 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGT 45 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHH
Confidence 345666555 5667885 9999999999998754
No 163
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.20 E-value=8 Score=35.77 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHH--------------HHHhhcC-------CceEeccCCcEEEEcChhhHHHHhh
Q 014499 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTD-------GFLEVSDEGDVLYVFPNNYRAKLAA 151 (423)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~--------------aLAad~~-------G~LqVse~GdIlY~FP~~fRs~l~~ 151 (423)
....++|+.|||..+|+|..++-++|. +.|.+.| ..|.-..+.-|.++.|.. .+
T Consensus 6 ~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~-----~~ 80 (344)
T 3kjx_A 6 DTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSL-----SN 80 (344)
T ss_dssp ----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCS-----SS
T ss_pred cCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC-----Cc
Confidence 345689999999999999999988773 3343332 234445567788888752 34
Q ss_pred hhHHHhHHHHHHHHh
Q 014499 152 KSFRLKVEPVIDKAK 166 (423)
Q Consensus 152 Ks~r~rlq~~~~k~w 166 (423)
.+|..-++.+-+.+.
T Consensus 81 ~~~~~~~~gi~~~a~ 95 (344)
T 3kjx_A 81 MVFPEVLTGINQVLE 95 (344)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 445444444444443
No 164
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=43.08 E-value=13 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCchhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 79 LPADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 79 l~~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.+...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 46 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTV 46 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHH
Confidence 344567777665 556898 699999999999987543
No 165
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=43.06 E-value=6.6 Score=32.51 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=25.8
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|. .+.|| .+|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 51 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLI 51 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 34567776664 56687 899999999999987543
No 166
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=42.95 E-value=14 Score=31.56 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=23.1
Q ss_pred hhhHHHHHHHH----hcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~Ave----~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
+.|++|++|.. +.||. +|+.|||.++|++....
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtl 61 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSL 61 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchH
Confidence 56788877755 45875 89999999999987543
No 167
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.92 E-value=11 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~ 45 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHH
Confidence 456666655 567898 599999999999987543
No 168
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=42.78 E-value=1.3e+02 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 43 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 89 (150)
T 2rdp_A 43 PQFVALQWLLEEG-DLTVGELSNKMYLACSTTTDLVDRMERN--GLVARV 89 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 4567888988865 7999999999999999999999999987 777654
No 169
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=42.77 E-value=13 Score=30.84 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 55 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNL 55 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHH
Confidence 4567777776 455687 789999999999987643
No 170
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=42.73 E-value=67 Score=25.97 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=51.5
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aG-L~l~~Ae~aL~aLAad~~G~LqVse~-GdIlY~F 141 (423)
+.++..+|++.+++....+|-.|+.+..+ ++.++--.++..|.+ .|.|+.-.+ |.++|..
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~--~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS--MGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH--HTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH--cCCeEEEecCCeEEEEe
Confidence 57788899999999999999999998765 699999999999998 577887765 5688865
No 171
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=42.69 E-value=33 Score=31.51 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.=.|.++.++.+ +..+|+.|+|.+.|++...+.+-|..|.. .|.++-+
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~ 62 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS 62 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 335556666554 46799999999999999999999999876 5677654
No 172
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=42.66 E-value=16 Score=30.07 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.0
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t 47 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGA 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchh
Confidence 3456666554 567787 59999999999998754
No 173
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=42.65 E-value=30 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCceeehhhhh-hcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 85 NRAMDAVDACNRRVTIGDVAG-KAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 85 ~~im~Ave~lg~rvTvgDVAa-~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
=.|+-.+.+.+ ..|++|+|. ..+++....-+.|..|-.+ |-++
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~--GlVe 62 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK--GLVE 62 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC--CCee
Confidence 35678888888 999999999 9999999999999999988 8888
No 174
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=42.64 E-value=1.3e+02 Score=24.67 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (423)
Q Consensus 87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~ 144 (423)
|+..+... +..|+.|+|...|++...+.+.|..|..+ |-++... |.-++.=+.+
T Consensus 45 i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~--Glv~r~~-~~~~~lT~~g 98 (155)
T 2h09_A 45 ISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATM--GLIEMIP-WRGVFLTAEG 98 (155)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TCEEEET-TTEEEECHHH
T ss_pred HHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHC--CCEEEec-CCceEEChhH
Confidence 33355544 46899999999999999999999999887 6776543 3345554443
No 175
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=42.58 E-value=6.8 Score=32.54 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=24.7
Q ss_pred hHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 84 ~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 45 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAAL 45 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHH
Confidence 6677655 567788 799999999999987543
No 176
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=42.26 E-value=49 Score=26.36 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 31 ~~~iL~~l~~~~-~~t~~~la~~l~~s~~~vs~~l~~Le~~--gli~r~ 76 (144)
T 1lj9_A 31 QYLYLVRVCENP-GIIQEKIAELIKVDRTTAARAIKRLEEQ--GFIYRQ 76 (144)
T ss_dssp HHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHCc-CcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456888888765 7999999999999999999999999887 666653
No 177
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.23 E-value=57 Score=32.72 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
.++++.+..+-+-=-++|+.++|...|++.+++|+.|..+-.|.-=+=..+....+|+....+-|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 344444444444457899999999999999999999999999874444567767788888776555
No 178
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=42.08 E-value=13 Score=31.20 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=23.9
Q ss_pred hhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 014499 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 83 ~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
.|++|++ .+.+.|| .+|+.|||.++|++...
T Consensus 8 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gt 43 (197)
T 2gen_A 8 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGS 43 (197)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 4556654 4667898 69999999999998754
No 179
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=42.06 E-value=76 Score=26.15 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 014499 83 VRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (423)
Q Consensus 83 ~~~~im~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP 142 (423)
+-..|.+.+... |.++ |..++|.+-|+|.+.++++|..|.++ |-|+... |-=.|+=+
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~~-g~G~~V~~ 79 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA--GYIYAKR-GMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEec-CCEEEEec
Confidence 344455555543 4555 68999999999999999999999986 5666432 33344544
No 180
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.00 E-value=31 Score=27.48 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+..+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~--glv~r~ 85 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ--GLVRRL 85 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCeeec
Confidence 345788998456678999999999999999999999999875 666654
No 181
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=41.81 E-value=14 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=25.6
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++ .+.+.||. +|+.|||.++|++....
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tl 76 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLI 76 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHH
Confidence 45566655 46778986 99999999999997654
No 182
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=41.69 E-value=13 Score=31.37 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
.+.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tl 49 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTV 49 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 4556677655 5567986 99999999999987543
No 183
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=41.67 E-value=13 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
+..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~ 47 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDAL 47 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
Confidence 4567778765 556797 589999999999987653
No 184
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=41.58 E-value=9 Score=31.46 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=26.0
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 51 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAI 51 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHH
Confidence 3456666655 6778986 99999999999987654
No 185
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=41.34 E-value=14 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=24.3
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++ .+.+.|+. +|+.|||.++|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 7 ETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
Confidence 34555554 46677865 89999999999987654
No 186
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=41.18 E-value=70 Score=26.75 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=41.4
Q ss_pred HHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 85 NRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 85 ~~im~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
..|.+.+... |-++ |..++|.+-|+|.+.++++|..|.++ |-++.. .|-=.|+=+.+...
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~--Gli~~~-~g~G~~V~~~~~~~ 75 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEA--GILYKK-RGIGMFVSAQAPAL 75 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT--TSEEEE-TTTEEEECTTHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEe-cCCEEEEecCchHh
Confidence 3444444443 4455 88999999999999999999999876 667643 34445665554433
No 187
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=40.96 E-value=16 Score=29.60 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=25.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASI 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHH
Confidence 556666554 667887 599999999999987654
No 188
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=40.92 E-value=14 Score=31.01 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.||. +|+.|||.++|++...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 50 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGS 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchh
Confidence 556677655 5567986 8999999999998754
No 189
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=40.83 E-value=13 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.5
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 80 ~~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
....|++|++| +.+.||. +|+.|||.++|++....
T Consensus 33 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tl 72 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATL 72 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 34567777665 5667975 99999999999987654
No 190
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.65 E-value=13 Score=32.55 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~t 45 (213)
T 2g7g_A 11 LDRERIAEAALELVDRDG-DFRMPDLARHLNVQVSS 45 (213)
T ss_dssp CCHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhH
Confidence 346666655 55669 99999999999998764
No 191
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=40.62 E-value=14 Score=31.82 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.1
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 65 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGST 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchh
Confidence 56666555 567798 799999999999987654
No 192
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=40.44 E-value=87 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKSG-KVSMSKLIENMGCVPSNMTTMIQRMKRD--GYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHCSSCCTTHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhHHHHHHHHHHHC--CCeeec
Confidence 4557888887755 6999999999999999999999999887 677653
No 193
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.10 E-value=12 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHH
Q 014499 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
++|+.|||.++|+|..++-+.|..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999999888763
No 194
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=40.05 E-value=15 Score=34.14 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=0.0
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHH
Q 014499 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
....++|+.|||.++|+|..++-++|.
T Consensus 8 ~g~~~~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCCcHHHHHHHhCCCHHHHHHHHC
Confidence 345679999999999999999998886
No 195
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=39.94 E-value=21 Score=27.42 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=25.5
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae 115 (423)
+.+|..++++.| .|+.++|.++|++.....
T Consensus 11 ~~ri~~~l~~~g--lT~~~LA~~~Gvs~stls 40 (74)
T 1neq_A 11 RADVIAGLKKRK--LSLSALSRQFGYAPTTLA 40 (74)
T ss_dssp HHHHHHHHHTTS--CCHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHH
Confidence 788888888654 899999999999987764
No 196
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=39.82 E-value=43 Score=32.04 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~ 143 (423)
+.+.+|++.+. .+..+|+.|+|.+.|+|...+.+.|..|.. .|.+..+..|. =|....
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i~~~~g~-GY~l~~ 62 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDVFTVPGK-GYSLPE 62 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCCEEETTT-EEECSS
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcEEEecCC-CcEEee
Confidence 45667888884 577899999999999999999999999976 45555555555 466643
No 197
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=39.55 E-value=15 Score=30.98 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=23.5
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~ 112 (423)
..|++|++ .+.+.|| .+|+.|||.++|++..
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~ 63 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKG 63 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTT
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcc
Confidence 45566655 5567787 4999999999998753
No 198
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=39.48 E-value=11 Score=30.61 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 84 RNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 84 ~~~im~Ave~lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
+.+|+..+ +-|.++ |..++|.+-|+|...++++|..|.++ |-++...
T Consensus 30 ~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~--GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESA--GVIESRS 77 (102)
T ss_dssp HHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEe
Confidence 56666322 346666 99999999999999999999999886 6677665
No 199
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.07 E-value=14 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.||. +|+.|||.++|++...
T Consensus 9 ~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gt 45 (203)
T 2np5_A 9 TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGA 45 (203)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHH
Confidence 345666554 5678986 9999999999998754
No 200
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=39.07 E-value=17 Score=31.34 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.9
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSV 80 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhH
Confidence 556777665 5566886 99999999999998655
No 201
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=38.88 E-value=15 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.||. +|+.|||.++|++...
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt 46 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGT 46 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 4567777666 5568985 9999999999998643
No 202
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.74 E-value=39 Score=26.74 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 37 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~~vs~~l~~Le~~--glv~r~ 83 (142)
T 2fbi_A 37 QQWRVIRILRQQG-EMESYQLANQACILRPSMTGVLARLERD--GIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 3456888888876 5999999999999999999999999876 666543
No 203
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=38.72 E-value=16 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgt 45 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGA 45 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 456666655 566798 79999999999998654
No 204
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=38.56 E-value=26 Score=33.40 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
...+-.|.+++.+.++..|+.|+|+++|++..-.++=|++|++- |.|+.+ ++ .|.-..--
T Consensus 34 ~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~--g~l~~~--~~-~y~~t~~s 93 (363)
T 3dp7_A 34 LMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTI--GTILLE--ED-RYVLAKAG 93 (363)
T ss_dssp HHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEE--TT-EEEECHHH
T ss_pred HHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC--CCeEec--CC-EEecccch
Confidence 33445567788776778999999999999999999999988874 677664 22 46665544
No 205
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=38.55 E-value=1.5e+02 Score=23.56 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc-CCcEE
Q 014499 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVL 138 (423)
Q Consensus 76 ~~~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse-~GdIl 138 (423)
.+.|...+.+.-+..+.+.=-++|+.++|..-||+.+++|+-|..+-.+..=+=..+. +|-|.
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~ 72 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 72 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEE
Confidence 4567777888888899998889999999999999999999999999888654444454 34443
No 206
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=38.39 E-value=39 Score=31.21 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc-ChhhH---HHHhhhhHH
Q 014499 83 VRNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF-PNNYR---AKLAAKSFR 155 (423)
Q Consensus 83 ~~~~im~Ave~l---g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F-P~~fR---s~l~~Ks~r 155 (423)
.=.|.++.++-+ +...|+.|+|.+.|++...+.+-|..|.. .|.++-+ +| -|.- |+-++ ..+.+..+.
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~-~~--~Y~Lg~~~~~lg~~~~~~~~l~ 93 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD-GS--AFWLTPRVLELGYSYLSSLSLP 93 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES-SS--EEEECGGGGGTTHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec-CC--EEEEcHHHHHHHHHHHhcCCHH
Confidence 335566666654 46799999999999999999999998876 4667654 22 4554 33221 222333444
Q ss_pred HhHHHHHHH
Q 014499 156 LKVEPVIDK 164 (423)
Q Consensus 156 ~rlq~~~~k 164 (423)
...++.++.
T Consensus 94 ~~a~p~l~~ 102 (265)
T 2ia2_A 94 EVAQPHLEK 102 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555544
No 207
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.20 E-value=61 Score=27.02 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-ec-cCCcEEEEc
Q 014499 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-VS-DEGDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~Lq-Vs-e~GdIlY~F 141 (423)
....|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|...- -++ +. ++|...|..
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G--lv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG--LVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT--SEEEECSSSSSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC--cEEEEEeCCCceEEEe
Confidence 3567888999999887 789999999877 899999999999998763 343 33 356677875
No 208
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=37.83 E-value=9.8 Score=31.14 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=25.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 51 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGI 51 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHH
Confidence 346666655 5566885 89999999999997654
No 209
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=37.72 E-value=17 Score=31.40 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t 49 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPL 49 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 345666554 567798 79999999999998654
No 210
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.62 E-value=74 Score=27.13 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|...-==+=-..++|...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3567888999999988899999999876 8999999999999987532221123467777875
No 211
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=37.59 E-value=13 Score=32.53 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=24.5
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~Av----e~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 25 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 61 (211)
T 3fiw_A 25 MNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPS 61 (211)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred cCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 3456666654 456987 9999999999998754
No 212
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=37.47 E-value=36 Score=27.41 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+. +|+.|+|...|++...+-+.|..|..+ |.++..
T Consensus 32 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 78 (145)
T 3g3z_A 32 NLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQ--GLIEWQ 78 (145)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeec
Confidence 44678899988775 999999999999999999999999775 777653
No 213
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=37.45 E-value=25 Score=31.45 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=47.9
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE-e-ccCCcEEEE
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE-V-SDEGDVLYV 140 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq-V-se~GdIlY~ 140 (423)
++.+.-+++++-|-+.|.-+|+.-|+.+-.++...|+++|+.|.+. |.+. | -.+.-.||.
T Consensus 45 fDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~k--GlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 45 IEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADR--KLVEKVAKNGNQWVYS 106 (143)
T ss_dssp CCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHT--TSEEEEEEETTEEEEE
T ss_pred ecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHC--CCEEEEecCCCeEEEe
Confidence 3466777888888888889999999999999999999999999876 4443 3 335666665
No 214
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=37.43 E-value=23 Score=28.46 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
.|++++. ..++..++|..+||+-..+++.|..|-.. |-++...+
T Consensus 12 ~IL~~i~---~~~~~t~La~~~~ls~~~~~~~l~~L~~~--GLI~~~~~ 55 (95)
T 1r7j_A 12 AILEACK---SGSPKTRIMYGANLSYALTGRYIKMLMDL--EIIRQEGK 55 (95)
T ss_dssp HHHHHHT---TCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred HHHHHHH---cCCCHHHHHHHhCcCHHHHHHHHHHHHHC--CCeEEECC
Confidence 4555554 23999999999999999999999999764 55555433
No 215
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=37.40 E-value=16 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGA 47 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHH
Confidence 456677655 556797 59999999999988543
No 216
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.37 E-value=74 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~ 143 (423)
.|-+++...+ ..|+.+++..+|++-.++-.|+==||.+ +.+++.++...+|+...
T Consensus 12 ~VW~~L~~~~-~~s~~el~k~t~l~d~el~lAIGWLaRE--dKI~~~~~~~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARE--NKVVIERKNGLIEIYNE 66 (82)
T ss_dssp HHHHHHHHCC-SBCHHHHHHHHTCCHHHHHHHHHHHHTT--TSEEEEEETTEEEEEEG
T ss_pred HHHHHHhccC-CCCHHHHHHHhCCCHHHHHHHHHHHhcc--CceeEEeeCCEEEEEEc
Confidence 4667888866 9999999999999999999999888876 78998888888888643
No 217
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=37.30 E-value=14 Score=32.25 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhc-CC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDAC-NR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~l-g~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+. |+ .+|+.|||.++|++....
T Consensus 5 ~tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tl 43 (220)
T 1z0x_A 5 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAI 43 (220)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHH
T ss_pred chHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHH
Confidence 346677665 4556 88 699999999999987654
No 218
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=36.91 E-value=1.2e+02 Score=24.58 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 44 ~~~~iL~~l~~~~-~~t~~ela~~l~i~~~tvs~~l~~Le~~--Glv~r~ 90 (155)
T 3cdh_A 44 PEWRVLACLVDND-AMMITRLAKLSLMEQSRMTRIVDQMDAR--GLVTRV 90 (155)
T ss_dssp HHHHHHHHHSSCS-CBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 3456788887654 6999999999999999999999999876 666654
No 219
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=36.89 E-value=66 Score=26.00 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCceeehhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL-~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP 142 (423)
.|-+++... ...|+.+++..+|+ +-.++-.|+==||.+ +.+++.++++.+|++.
T Consensus 14 ~VW~~L~~~-~~~s~~el~k~t~l~~d~el~lAiGWLaRE--dKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 14 QIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLRE--DKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTS-SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT--TCEEEEEETTEEEEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc--CceEEEeeCCEEEEEe
Confidence 355667765 58999999999999 999999999989876 7999999999999874
No 220
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=36.81 E-value=29 Score=36.93 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=50.7
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcC-------CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-------LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aG-------L~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
.....+|++.++. .+.||+.++|.+-| .+..-|+..|..+ ...|.|=++++.+=+|-||.-|
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~--e~eG~l~rDd~~~G~~yypNlf 561 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNC--VDEGDLLIDKQLSGIYYYKNSY 561 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHH--HHTTSEEEEEETTEEEEEECCS
T ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHH--HHcCCEEEECCCCceEEehhhc
Confidence 4677888888876 67899999999999 9999999999874 4468888887666688888544
No 221
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.66 E-value=17 Score=31.26 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~ 77 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTV 77 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHH
Confidence 456666654 5667986 99999999999987543
No 222
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=36.64 E-value=10 Score=31.23 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=24.6
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
+.|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 456666555 4566876 99999999999987643
No 223
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=36.59 E-value=33 Score=30.69 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec---cCCc
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGD 136 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs---e~Gd 136 (423)
..+.+|++.+. . ++.|+.|+|.+.|++...+.+-|..|..+ |-++.. ..|+
T Consensus 20 ~~~~~IL~~L~-~-~~~s~~eLA~~lglS~stv~~~l~~Le~~--GlI~~~~~~~~~~ 73 (192)
T 1uly_A 20 DTRRKILKLLR-N-KEMTISQLSEILGKTPQTIYHHIEKLKEA--GLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHHHT-T-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEEEETT
T ss_pred HHHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccccc
Confidence 46678999997 3 68999999999999999999999999654 667654 4565
No 224
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=36.39 E-value=18 Score=30.32 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|.+|++| +.+.|| .+|+.|||.++|++....
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 48 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANL 48 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHH
Confidence 356666655 556786 699999999999987643
No 225
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=36.33 E-value=39 Score=28.32 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 46 ~~~~iL~~L~~~~-~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 91 (168)
T 2nyx_A 46 PQFRTLVILSNHG-PINLATLATLLGVQPSATGRMVDRLVGA--ELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 3457888988766 7999999999999999999999999876 66664
No 226
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=36.22 E-value=11 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 56 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGT 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhH
Confidence 456677665 5566986 9999999999998754
No 227
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=36.15 E-value=18 Score=30.21 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
+.|++|++| +.+.||. +|+.|||.++|++...
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gt 46 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGA 46 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 346667655 5667985 9999999999998754
No 228
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=36.03 E-value=18 Score=27.40 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.9
Q ss_pred eeehhhhhhcCCCHHHHHHHHH
Q 014499 98 VTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
+|+.|||..+|++...+-+.|.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5889999999999999977663
No 229
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=35.92 E-value=33 Score=26.87 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHhcC---------CceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 85 NRAMDAVDACN---------RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 85 ~~im~Ave~lg---------~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
|++.+.+.+.| +..|+.|+|..-|+++++.-++|.++.+.
T Consensus 17 P~~~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp GGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 44555566554 57899999999999999999999988753
No 230
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=35.88 E-value=18 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
+.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tl 59 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTL 59 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 346666655 5678985 89999999999987654
No 231
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=35.79 E-value=20 Score=30.30 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.||. +|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGA 47 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 3457777665 4567985 9999999999998754
No 232
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=35.77 E-value=51 Score=26.94 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+... ..+|+.|+|...|++...+.+.|..|... |-++..
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~--glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLER--GFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeee
Confidence 345688888874 57999999999999999999999999987 777654
No 233
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=35.60 E-value=17 Score=31.77 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.1
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 014499 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~ 112 (423)
...|++|++|. .+.|| .+|+.|||.++|++..
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~ 81 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGTG 81 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChH
Confidence 34566776654 45597 7999999999998753
No 234
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.57 E-value=47 Score=26.50 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|... |-++...
T Consensus 38 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRMEQV--DLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEeec
Confidence 4557888888765 6999999999999999999999999987 7777544
No 235
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=35.14 E-value=17 Score=34.23 Aligned_cols=52 Identities=29% Similarity=0.314 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCeEeeeeccCccCCCCCCCCchhhhhHhhhcCCccccCCCCCeEEecc
Q 014499 273 WKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFP 332 (423)
Q Consensus 273 Wk~Ig~~Ir~N~GvV~AEqlAPylD~~~~~~~E~y~LpvL~rF~G~PeVse~G~IVY~FP 332 (423)
|..+-+.+. +|-.|+.++||.-+++ +++.+..+|...+ .-+.+++|+||. ||
T Consensus 24 ~~~llr~la-~Grpv~~~~LA~~~g~-----~~~~v~~~L~~l~-~~~~D~~G~Ivg-yp 75 (220)
T 3f2g_A 24 LVPLLRELA-KGRPVSRTTLAGILDW-----PAERVAAVLEQAT-STEYDKDGNIIG-YG 75 (220)
T ss_dssp HHHHHHHHT-TTSCBCHHHHHHHHTC-----CHHHHHHHHHHCT-TCEECTTSCEEE-SS
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHhCc-----CHHHHHHHHHhCC-cEEECCCCCEEE-ec
Confidence 566667777 8889999999987775 4577889999987 578999999988 55
No 236
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=35.00 E-value=20 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred hhhHHHHHHHH-----hcCC-ceeehhhhhhcCCCHH
Q 014499 82 DVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 82 ~~~~~im~Ave-----~lg~-rvTvgDVAa~aGL~l~ 112 (423)
..|++|++|.. +.|+ .+|+.|||.++|++..
T Consensus 11 ~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~ 47 (220)
T 3lsj_A 11 QTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPA 47 (220)
T ss_dssp HHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChh
Confidence 45677776654 5565 7999999999998753
No 237
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=34.93 E-value=49 Score=26.76 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++.
T Consensus 42 ~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTP-GISVADLTKRLIITGSSAAANVDGLISL--GLVVK 87 (154)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4457889998875 5999999999999999999999999874 77766
No 238
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=34.92 E-value=19 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=23.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~ 112 (423)
..|++|++| +.+.|| .+|+.|||.++|++..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~ 47 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRG 47 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHH
Confidence 345666554 567797 6999999999998854
No 239
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=34.80 E-value=16 Score=31.41 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=23.5
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l 111 (423)
.+.|++|++| +.+.|| .+|+.|||.++|++.
T Consensus 34 ~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCCh
Confidence 3456777665 457797 799999999999863
No 240
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=34.52 E-value=47 Score=26.20 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+. ..+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~--glv~~~ 76 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEES--GFIERE 76 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 455688888875 67999999999999999999999999876 666653
No 241
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=34.49 E-value=82 Score=28.58 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.2
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc-CCc
Q 014499 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGD 136 (423)
Q Consensus 93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse-~Gd 136 (423)
+-|.+++..|+|.+-|+|...++++|..|.++ |-+++.. .|-
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~--Glv~~~~~~G~ 87 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ--SLLRVETHKGA 87 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETTTEE
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCce
Confidence 46889999999999999999999999999765 7777663 443
No 242
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=34.15 E-value=17 Score=33.44 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeehhhhhhcCCCHHHHHHHHH
Q 014499 98 VTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
+|+.|||.++|+|..++-+.|.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5899999999999999988887
No 243
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=34.13 E-value=20 Score=30.29 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.6
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (219)
T 2w53_A 11 ATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGA 47 (219)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 346677665 556797 59999999999998754
No 244
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.87 E-value=1.1e+02 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.6
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 014499 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (423)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP 142 (423)
-|.++ |..++|.+-|+|...++++|..|.++ |-++.. .|-=.|+=+
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~--Gli~~~-~g~G~~V~~ 77 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQ--KVIRTI-PGKGTFITG 77 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECS
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe-cCCeEEEcc
Confidence 35567 99999999999999999999999875 556543 233345544
No 245
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=33.86 E-value=20 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 7 ~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~t 43 (235)
T 2fbq_A 7 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAA 43 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 456677665 556798 69999999999998654
No 246
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=33.79 E-value=12 Score=30.61 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tl 44 (186)
T 2jj7_A 7 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhh
Confidence 445666554 5567886 99999999999988754
No 247
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=33.67 E-value=19 Score=30.21 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 52 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESL 52 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHH
Confidence 3456677665 5667875 99999999999987654
No 248
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.38 E-value=19 Score=30.33 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 49 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGV 49 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHH
Confidence 456777665 5568875 89999999999987543
No 249
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=33.33 E-value=20 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 59 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSA 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHH
Confidence 3556677665 556787 69999999999998653
No 250
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=33.16 E-value=26 Score=28.49 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499 82 DVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (423)
Q Consensus 82 ~~~~~im~Ave~l----g~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~ 144 (423)
.+-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+... |-=.|+=+.+
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~--Gli~~~~-~~G~~V~~~~ 77 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDD--NVIEKRR-GLGMLVKAGA 77 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECTTH
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEec-CCeEEEeCCc
Confidence 3445555555543 4455 89999999999999999999999886 5676433 3334555443
No 251
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.11 E-value=40 Score=22.15 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=26.7
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHH
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL 118 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL 118 (423)
+.++....|++.++ .| .|+.++|...|++.....+-|
T Consensus 6 ~~~~~~~~i~~l~~-~g--~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 6 INKHEQEQISRLLE-KG--HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SCTTHHHHHHHHHH-TT--CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCHHHHHHHHHHHH-cC--CCHHHHHHHHCCCHHHHHHHH
Confidence 44455566666654 33 899999999999998886654
No 252
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=33.04 E-value=25 Score=29.25 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.5
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
-|-++ |..++|.+-|+|.+.+++||..|.++ |-++.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~e--Glv~~ 70 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQ--EVIIT 70 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE
Confidence 46677 88899999999999999999999876 55553
No 253
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.98 E-value=22 Score=30.03 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 86 RAMDAVDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 86 ~im~Ave~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
..++.+.+.||. +|+.|||..+|++....
T Consensus 19 aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tl 48 (202)
T 2i10_A 19 TAMELFWRQGYEGTSITDLTKALGINPPSL 48 (202)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHhCCChHHH
Confidence 334556778986 88999999999987654
No 254
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.90 E-value=11 Score=31.90 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=4.2
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHHH
Q 014499 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (423)
Q Consensus 83 ~~~~im~Ave~lg~r-vTvgDVAa~aGL~l~~ 113 (423)
+-+..++.+.+.||. +|+.|||.++|++...
T Consensus 35 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 66 (212)
T 2np3_A 35 ILTAARVCFAERGFDATSLRRIAETAGVDQSL 66 (212)
T ss_dssp CHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCCHHH
Confidence 334445556667886 9999999999987643
No 255
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=32.87 E-value=9.2 Score=35.28 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHH
Q 014499 96 RRVTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
.++|+.|||.++|+|..++-++|.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 479999999999999999988886
No 256
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=32.43 E-value=70 Score=29.67 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=42.2
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 014499 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD 136 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd 136 (423)
-|-...+-.|.+++.+ +..|+.|+|+++|++....++=|+.|++ -|.++-.++|.
T Consensus 21 ~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~~~~~ 75 (332)
T 3i53_A 21 AVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRDGQGV 75 (332)
T ss_dssp HHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECTTSB
T ss_pred HHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEecCCCe
Confidence 3444555667788864 4799999999999999999999999987 56776655553
No 257
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=32.27 E-value=63 Score=31.69 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcChhhHH
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYRA 147 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G-dIlY~FP~~fRs 147 (423)
++.....++++.+.+. ..+|+.+++...|++-..|++.|..|... |.|+-...| .-+|.+++-++-
T Consensus 294 ~~~~~~~~ll~~l~~~-p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~~~~ 360 (373)
T 2qc0_A 294 LPKIYSHELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVTL 360 (373)
T ss_dssp CTTTCCHHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHHH
T ss_pred ccchhHHHHHHHHHhC-CcccHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEEecCCCceEEehHHHHHH
Confidence 3344456788888764 56899999999999999999999999864 777765544 367887766654
No 258
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.18 E-value=2e+02 Score=23.29 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+.+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 53 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAKD-GLPIGTLGIFAVVEQSTLSRALDGLQAD--GLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEec
Confidence 4567888888765 6999999999999999999999999876 677654
No 259
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=32.11 E-value=12 Score=30.87 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.5
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~Av----e~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
+.|++|++|. .+.||. +|+.|||.++|++....
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 55 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNL 55 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
Confidence 4577787664 567875 99999999999987654
No 260
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.08 E-value=9.6 Score=35.03 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHH
Q 014499 96 RRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
.++|+.|||.++|+|..++-+.|..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 4799999999999999999999885
No 261
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=31.97 E-value=19 Score=31.78 Aligned_cols=63 Identities=24% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCeEeeeeccCccCCCCCCCCchhhhhHhhhcCCccccCCCCCeEEeccc
Q 014499 270 EKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPS 333 (423)
Q Consensus 270 erRWk~Ig~~Ir~N~GvV~AEqlAPylD~~~~~~~E~y~LpvL~rF~G~PeVse~G~IVY~FPe 333 (423)
++|++.|-++|++|+- ++-+||+-.|....=.-.++-+-+-|.+.+=.=--+++|+-+|..|+
T Consensus 4 ~~R~~~I~~li~~~~~-~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~vKv~~~~g~~~Y~lp~ 66 (149)
T 1b4a_A 4 GQRHIKIREIIMSNDI-ETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKYSLPS 66 (149)
T ss_dssp CHHHHHHHHHHHHSCC-CSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCEEEECSSSCEEEECTT
T ss_pred HHHHHHHHHHHHHCCC-ccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCeEEECCCCCEEEEeCC
No 262
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=31.94 E-value=69 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=35.6
Q ss_pred cCCceeehhhhhhcC--CCHHHHHHHHHHHHhhc---CCceEeccCCc
Q 014499 94 CNRRVTIGDVAGKAG--LKLNEAQKALQALAADT---DGFLEVSDEGD 136 (423)
Q Consensus 94 lg~rvTvgDVAa~aG--L~l~~Ae~aL~aLAad~---~G~LqVse~Gd 136 (423)
.+.-+|+.++|...| ++.+++++.|..|.+++ +--+++-+.++
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~ 66 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAG 66 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECC
Confidence 467799999999999 99999999999999988 34566655444
No 263
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.90 E-value=83 Score=26.80 Aligned_cols=60 Identities=10% Similarity=0.247 Sum_probs=47.5
Q ss_pred CchhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-ec-cCCcEEEEc
Q 014499 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-VS-DEGDVLYVF 141 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~Lq-Vs-e~GdIlY~F 141 (423)
....|..|++++.+.+ .-+|+.||.... ++++.++=+.|..|... |-++ +. ++|...|..
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~--Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA--GIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT--TSEEEEECGGGCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC--CcEEEEEeCCCceEEEe
Confidence 3567888999998887 789999999876 89999999999999865 3443 22 367778875
No 264
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=31.86 E-value=36 Score=27.80 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|... |-++..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~--Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD--GMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 345788999656678999999999999999999999999886 777654
No 265
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=31.85 E-value=23 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.8
Q ss_pred CchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 014499 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 80 ~~~~~~~im~Av----e~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
..+.|++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t 48 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGA 48 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccH
Confidence 445677787765 45676 78999999999998643
No 266
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=31.79 E-value=20 Score=35.13 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHH
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (423)
+..|++.+.+....+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 195 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 356677776667799999999999999999999998873
No 267
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=31.59 E-value=13 Score=30.53 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~ 48 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHH
Confidence 456667655 556787 589999999999987543
No 268
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=31.54 E-value=33 Score=27.56 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 38 ~~~~vL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 84 (142)
T 3ech_A 38 PDVHVLKLIDEQR-GLNLQDLGRQMCRDKALITRKIRELEGR--NLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHC---CHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEeec
Confidence 3457888888876 6999999999999999999999999875 666643
No 269
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=31.45 E-value=1.9e+02 Score=22.67 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--gli~r~ 81 (138)
T 1jgs_A 35 AQFKVLCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLVCK--GWVERL 81 (138)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHHHC--CCEEec
Confidence 3456888887765 5899999999999999999999999876 677653
No 270
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=31.09 E-value=10 Score=35.37 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHH
Q 014499 95 NRRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
..++|+.|||.++|+|..++-+.|..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34689999999999999999998875
No 271
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=31.05 E-value=25 Score=31.05 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.2
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~ 85 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTV 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHH
Confidence 3556777665 5567985 99999999999998654
No 272
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=30.98 E-value=62 Score=26.19 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 48 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETD-ERSVSEIGERLYLDSATLTPLLKRLQAA--GLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4557888888754 6999999999999999999999999876 566543
No 273
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=30.80 E-value=45 Score=25.85 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=34.2
Q ss_pred HHHHHHHHhcC-------C--ceeehhhhhhcCCCHHHHHHHHHHHHhhcC
Q 014499 85 NRAMDAVDACN-------R--RVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (423)
Q Consensus 85 ~~im~Ave~lg-------~--rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~ 126 (423)
|++.+.+.+.| . ..|+.++|...|+++++..++|.+.+++..
T Consensus 19 P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~~ 69 (73)
T 2k5e_A 19 PGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEHH 69 (73)
T ss_dssp THHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 55666666655 2 589999999999999999999999888764
No 274
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=30.79 E-value=12 Score=32.07 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
..+.+|++ .-+.|.++|..++|.+.|+|...+.++|..|.++ |-++
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~--Gli~ 58 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ--GFIQ 58 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH--TSEE
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEE
Confidence 45678888 4556888999999999999999999999999765 4454
No 275
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=30.64 E-value=25 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 13 ~~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tl 51 (208)
T 3v6g_A 13 AGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGST 51 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhH
Confidence 3456777665 567798 589999999999987543
No 276
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=30.24 E-value=82 Score=29.64 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=43.4
Q ss_pred CCchhhHHHHHHHHh-cCCceeehhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeccCCc
Q 014499 79 LPADVRNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGD 136 (423)
Q Consensus 79 l~~~~~~~im~Ave~-lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~---~G~LqVse~Gd 136 (423)
++++--+++++|+-= .|.-+|+.++|...|++..++++.|..|..++ +--+++-+.++
T Consensus 11 ~~~~~l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~ 72 (219)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSE 72 (219)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 444444555555543 57779999999999999999999999999988 34566655443
No 277
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.23 E-value=1.1e+02 Score=25.88 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP 142 (423)
...|..|++++.+.+ -+|+.||.... .+++.++=+.|..|...-=-+=-..++|...|...
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 457888999999988 89999997754 79999999999999876432222334677778753
No 278
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=30.20 E-value=1.1e+02 Score=28.60 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=45.6
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCC---HHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLK---LNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (423)
Q Consensus 76 ~~~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~---l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~ 143 (423)
+--|-...+-.|.+++.+.|+..|+.|+|+++|++ ..-.++=|+.|++ -|.|+..++|+=.|.-..
T Consensus 30 ~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~y~~t~ 98 (352)
T 1fp2_A 30 SMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH--NGFFEIITKEEESYALTV 98 (352)
T ss_dssp HHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHH--TTSEEEEESSSEEEEECH
T ss_pred HHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHh--CCeEEEecCCCCeEeCCH
Confidence 33344455566778888776789999999999995 6667777777776 567776532344666544
No 279
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=30.14 E-value=46 Score=30.90 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCcccccCCCCchhhHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 70 PGRIVESDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 70 ~~~~v~~~~l~~~~~~~im~Ave~lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
||=.+.-+.-......+|.+.+++.|+.. ++.|++...|++-.+++ .++..+.+.|--.+|+++
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~-~~l~~l~~~g~lv~l~~~ 193 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELE-ELLHYLVREGVLVKINDE 193 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHH-HHHHHHHHTTSEEESSSS
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHH-HHHHHHHHCCCEEEecCC
Confidence 44344444444556778888898889887 89999999999999995 455555566666677653
No 280
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=30.00 E-value=57 Score=26.90 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |.++...
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r~~ 101 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLGVMEQSTTSRTVDQLVDE--GLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEECC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEeeC
Confidence 3557888888776 8999999999999999999999999875 7777543
No 281
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=29.89 E-value=38 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=25.2
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
..|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 44 (213)
T 3ni7_A 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEI 44 (213)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHH
Confidence 44556654 5778896 699999999999987653
No 282
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.89 E-value=61 Score=25.95 Aligned_cols=47 Identities=6% Similarity=0.100 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+. +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r~ 84 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRK--ELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHC--CCeecc
Confidence 445688888877 67999999999999999999999999875 777754
No 283
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.71 E-value=26 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=25.5
Q ss_pred chhhHHHHHHH----HhcCCceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|. .+.|..+|+.|||.++|++....
T Consensus 19 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tl 56 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQV 56 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHH
Confidence 34667776654 44568999999999999987654
No 284
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=29.31 E-value=18 Score=27.53 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=18.9
Q ss_pred CceeehhhhhhcCCCHHHHHHHH
Q 014499 96 RRVTIGDVAGKAGLKLNEAQKAL 118 (423)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL 118 (423)
..+|+.|||..+|++...+-+.|
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Confidence 35899999999999998886544
No 285
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.24 E-value=25 Score=28.99 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
+.+.+|++++++ ...++.|+|...|++.++++ .++..+.+.|--..+.++
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~-~~l~~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMR-LTLRQAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHH-HHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHH-HHHHHHHHCCCEEEecCC
Confidence 456777777755 34688899999999999995 555666666766777665
No 286
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=29.11 E-value=12 Score=39.47 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G 135 (423)
..++.|++.+++.| .+|-.||+...|++..+|.+.|..|..+ |.|+-...|
T Consensus 516 ~~~~~I~~~l~~~g-~it~~di~~l~~ls~~qa~~~L~~Lv~~--G~l~~~G~g 566 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG-DLATSDLMAMCGVSRGTAKACVDGLVDE--ERVVAVGGG 566 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEeCCC
Confidence 34567889888865 4999999999999999999999999876 666654443
No 287
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.06 E-value=1.7e+02 Score=24.15 Aligned_cols=48 Identities=6% Similarity=0.126 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
..-.|+..+... +..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 95 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR--GLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEeec
Confidence 456789999888 489999999999999999999999999875 777744
No 288
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.27 E-value=12 Score=34.61 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHH
Q 014499 95 NRRVTIGDVAGKAGLKLNEAQKALQ 119 (423)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~ 119 (423)
..++|+.|||.++|+|..++-++|.
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4579999999999999999988886
No 289
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.23 E-value=30 Score=29.90 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 79 LPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 79 l~~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
-....|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 13 ~~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~ 53 (216)
T 2oi8_A 13 YRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPAL 53 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHH
Confidence 345667777665 5566875 99999999999997655
No 290
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=28.21 E-value=12 Score=35.31 Aligned_cols=46 Identities=15% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcC--Cceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCce
Q 014499 82 DVRNRAMDAVDACN--RRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFL 129 (423)
Q Consensus 82 ~~~~~im~Ave~lg--~rvTvgDVAa~a-GL~l~~Ae~aL~aLAad~~G~L 129 (423)
..+.+|++.++... ..+.+-||+++. |++.++++++|..|.++ ||+
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e--G~I 255 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE--GHI 255 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC--CEE
Confidence 46788999999875 789999999988 79999999999999877 555
No 291
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.20 E-value=16 Score=31.19 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.2
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 014499 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 82 ~~~~~im~----Ave~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
+.|++|++ .+.+.|| .+|+.|||.++|++...
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgt 39 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGL 39 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 44666655 4567787 59999999999998654
No 292
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.76 E-value=64 Score=25.79 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
.+-++.++. ..-|.+.|+|+.-||+..++-..++.|-++-.=+==+++.|.-||.=|..+
T Consensus 10 ~~Fi~yIk~-~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~ 69 (72)
T 1wi9_A 10 TEFINYIKK-SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHHH-CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred HHHHHHHHH-cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHh
Confidence 344555554 466888899999999999999999999887644445788999999766543
No 293
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=27.74 E-value=57 Score=30.80 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=47.0
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCC---CHHHHHHHHHHHHhhcCCceEec-----c-CC--cEEEEcChh
Q 014499 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNEAQKALQALAADTDGFLEVS-----D-EG--DVLYVFPNN 144 (423)
Q Consensus 76 ~~~l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL---~l~~Ae~aL~aLAad~~G~LqVs-----e-~G--dIlY~FP~~ 144 (423)
+--|-...+-.|.+++.+.|+..|+.|+|+++|+ +..-.++=|+.|++ -|.|+-. + +| +-.|.-...
T Consensus 24 ~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~~~g~~~~~y~~t~~ 101 (358)
T 1zg3_A 24 SMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH--NGFFAKTIVKGKEGDEEEEIAYSLTPP 101 (358)
T ss_dssp HHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHH--TTSEEEEEECCSSSSCCCEEEEEECHH
T ss_pred HHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhh--CCcEEEecccccccCCCCCCEEeCCHH
Confidence 3334445566778888877778999999999999 46677777777765 5677655 2 33 457776543
No 294
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.60 E-value=71 Score=24.69 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 83 VRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 83 ~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
.-++|.+.+++.= ...|+.|+|...|++....++.+...
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467778887763 37999999999999998887766654
No 295
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=27.08 E-value=17 Score=31.13 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=24.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 29 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 66 (226)
T 2pz9_A 29 DSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKER 66 (226)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHH
Confidence 3456666655 455688 49999999999998654
No 296
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=27.02 E-value=12 Score=29.52 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhc-----CCeEeeeeccCccCCC
Q 014499 271 KRWKLIGEYIASN-----GGVVTAEELAPYLDID 299 (423)
Q Consensus 271 rRWk~Ig~~Ir~N-----~GvV~AEqlAPylD~~ 299 (423)
.|.+.|.++|+.+ ||.++.+|||--++..
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS 37 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLS 37 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCC
Confidence 4678899999988 9999999999999974
No 297
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.99 E-value=37 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 83 ~~~~im~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.+-.|+..+.+.+ ..+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r 89 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK--GYIER 89 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT--TSBCC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEe
Confidence 3457888888875 78999999999999999999999999775 55543
No 298
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.73 E-value=67 Score=29.96 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~ 144 (423)
.+-+|+.++.+.+ ++|+.|+|.+.|++...+.+.|..|... |-++-......++.=|+.
T Consensus 153 ~~~~IL~~L~~~~-~~s~~eLA~~lglsksTv~r~L~~Le~~--GlV~r~~r~~~~~LT~~G 211 (244)
T 2wte_A 153 EEMKLLNVLYETK-GTGITELAKMLDKSEKTLINKIAELKKF--GILTQKGKDRKVELNELG 211 (244)
T ss_dssp HHHHHHHHHHHHT-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETTTTEEEECHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCccEEEECHHH
Confidence 4557888887654 6999999999999999999999999875 777765433333333333
No 299
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=26.71 E-value=14 Score=34.46 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
++|+.|||..+|+|..++-+.|...
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 5899999999999999999998864
No 300
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=26.19 E-value=31 Score=33.83 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCC------ceeehhhhhhcCCCHHHHHHHHHHHH
Q 014499 85 NRAMDAVDACNR------RVTIGDVAGKAGLKLNEAQKALQALA 122 (423)
Q Consensus 85 ~~im~Ave~lg~------rvTvgDVAa~aGL~l~~Ae~aL~aLA 122 (423)
..|++.+.+... .+|+.|++..||+..+++-.+|+.|-
T Consensus 194 ~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 194 QTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp HHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 556666655554 79999999999999999999998863
No 301
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=26.08 E-value=69 Score=27.79 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (423)
Q Consensus 87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G 135 (423)
+.-++++ .+.||-++.+.||++-..+|..|.+|. |.|=.++--.+|
T Consensus 25 la~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G 70 (117)
T 3ke2_A 25 LAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFA-DIGIEVEFVQDG 70 (117)
T ss_dssp HHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGG-GGTCEEEEECCT
T ss_pred HHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhh-hCCeEEEEEecc
Confidence 4667788 677999999999999999999999999 777766644444
No 302
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=26.03 E-value=82 Score=25.58 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
..-.|+..+... ..+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r 87 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQS--GWVKR 87 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEee
Confidence 445788888776 67999999999999999999999999875 56654
No 303
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.94 E-value=87 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHh
Q 014499 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAA 123 (423)
Q Consensus 82 ~~~~~im~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAa 123 (423)
+....|++.++..|. +++..|+..+++|+..++.+-|..|-+
T Consensus 37 ~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~ 79 (95)
T 2yu3_A 37 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 79 (95)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 355678999988665 699999999999999999999999955
No 304
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.72 E-value=36 Score=28.21 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=24.1
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 83 ~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 9 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 45 (199)
T 2o7t_A 9 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATL 45 (199)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHH
Confidence 45556554 5667885 69999999999997654
No 305
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.48 E-value=15 Score=33.78 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHH
Q 014499 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
.+|+.|||..+|+|..++-+.|..
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCC
Confidence 589999999999999998888764
No 306
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.46 E-value=31 Score=29.34 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~A 114 (423)
.+.|++|++| +.+.|| .+|+.|||.++|++.-..
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtl 46 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVL 46 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchH
Confidence 3557777665 566887 589999999999987543
No 307
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.45 E-value=47 Score=27.47 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 47 ~q~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 93 (162)
T 3k0l_A 47 PQFTALSVLAAKP-NLSNAKLAERSFIKPQSANKILQDLLAN--GWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHTSCGGGHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--cCeEec
Confidence 4567899998876 7999999999999999999999999765 777644
No 308
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.22 E-value=1.8e+02 Score=23.52 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=27.8
Q ss_pred CCCCchhhHHHHHHHHhc--CCceeehhhhhhcCCCHHHHHHHH
Q 014499 77 DKLPADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKAL 118 (423)
Q Consensus 77 ~~l~~~~~~~im~Ave~l--g~rvTvgDVAa~aGL~l~~Ae~aL 118 (423)
+.||+.-|.-+ ..---+ +...|..+||...|+|.+.+++-+
T Consensus 18 ~~Lp~reR~Vi-~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 18 AGLTAREAKVL-RMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred HcCCHHHHHHH-HHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45766555433 221111 257899999999999999997655
No 309
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=25.16 E-value=1.1e+02 Score=26.76 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhc--------------CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 82 DVRNRAMDAVDAC--------------NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 82 ~~~~~im~Ave~l--------------g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
+..+|+...+..+ ..++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 164 ~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~--GlI~~~ 226 (243)
T 3la7_A 164 DMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREK--KMISIH 226 (243)
T ss_dssp SHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHC--CCEEEc
Confidence 4566776665543 346788999999999999999999999865 555553
No 310
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=25.15 E-value=1.4e+02 Score=28.18 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=51.9
Q ss_pred CchhhHHHHHHH-HhcCCceeehhh---hhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 80 PADVRNRAMDAV-DACNRRVTIGDV---AGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 80 ~~~~~~~im~Av-e~lg~rvTvgDV---Aa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
||..|+-|++.+ ...|..+.++++ .+.-|++-.-++.+|--|+++ |-|+.++.| |.....-+.
T Consensus 2 ~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~--G~L~~~~~G---Y~LT~~~~~ 68 (247)
T 3kfw_X 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGA--GDLVRSADG---YRLSDRLLA 68 (247)
T ss_dssp CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHT--TSEEEETTE---EEECHHHHH
T ss_pred CCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCeeccCCc---eeeCHHHHH
Confidence 688899999975 778999999965 558899999999999999875 899999999 877664433
No 311
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=25.15 E-value=1.9e+02 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=33.9
Q ss_pred cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 94 CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 94 lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
.+..+|+.|+|...|++...+.+.|..|..+ |-++...+
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~--GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAE--ELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEEecC
Confidence 4678999999999999999999999999986 67766654
No 312
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=25.15 E-value=1.3e+02 Score=27.16 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=43.9
Q ss_pred CCCchhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 014499 78 KLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIl 138 (423)
.|+...+.-+..+++.. |..+++.++|...|++.....+-|....-+ .|.++.+..|.++
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~-~~li~~~~~g~~~ 304 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR-QGLLKRTPRGRVP 304 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH-TTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH-hcchhcCCcccee
Confidence 34444455566666665 456889999999999999999988886555 4678877777654
No 313
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=24.99 E-value=54 Score=25.28 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=33.9
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 014499 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (423)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY 139 (423)
|+.+|+.|+|...|++...+-+.|..|.. .|.++..+++...+
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv~~~~d~R~~~ 70 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMVECELEGRTKI 70 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCccCCCCCCeEE
Confidence 34599999999999999999999999965 57775555665433
No 314
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.81 E-value=66 Score=25.38 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=28.3
Q ss_pred hHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHH
Q 014499 84 RNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 84 ~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
=.++++.+++. ...+|+.|+|...|++...-++.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35667777765 56799999999999998877665543
No 315
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.54 E-value=1.2e+02 Score=25.75 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=40.3
Q ss_pred cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe----ccCCcE--EEEcChhhHH
Q 014499 94 CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV----SDEGDV--LYVFPNNYRA 147 (423)
Q Consensus 94 lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV----se~GdI--lY~FP~~fRs 147 (423)
.....|+.++|.+.|++.+++.+.|..|... |-|+. +++|.+ .|.|-.-|..
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K--GlI~i~~~~d~~g~~~~~ydL~pL~ek 105 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQK--GFLFIEECEDQNGIKFEKYSLQPLWGK 105 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH--TSCEEEEEECTTCCEEEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEeEecCCCceEEEeeHHHHHHH
Confidence 3466899999999999999999999999987 55554 445654 6666666655
No 316
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=24.53 E-value=43 Score=31.60 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=31.1
Q ss_pred eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 98 VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 98 vTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
||..+||..+|++++.+++-=++| |.-.+++.++.+|.=
T Consensus 79 vT~~eVAe~aGv~~e~~rr~wRal-----Gfp~~~d~d~r~fte 117 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAV-----GLARVDDPDAVVHMR 117 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHH-----CCCCCCCTTCCCEEH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh-----CCCCCCCCCCccCCH
Confidence 599999999999999997766766 666666667788763
No 317
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=24.44 E-value=37 Score=28.49 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=25.8
Q ss_pred CchhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 80 PADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 80 ~~~~~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
+...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t 50 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAA 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHH
T ss_pred chhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhH
Confidence 44567777766 455686 69999999999998754
No 318
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=24.15 E-value=16 Score=33.48 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 97 rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
++|+.|||.++|+|..++-++|...
T Consensus 2 ~~ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 2 LANIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 4799999999999999999988763
No 319
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=24.12 E-value=1.7e+02 Score=30.02 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec------cCCcEEEEcChhhHH
Q 014499 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS------DEGDVLYVFPNNYRA 147 (423)
Q Consensus 86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs------e~GdIlY~FP~~fRs 147 (423)
||++.+.+.|+ +|--++|..++++.+++++-|..|..+-=-++|-- +.+--.|.|=-|...
T Consensus 364 RI~r~L~~~~~-l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~ 430 (534)
T 2xub_A 364 RIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILS 430 (534)
T ss_dssp HHHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHH
Confidence 45566666665 99999999999999999999999998876666622 245577777555443
No 320
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=24.06 E-value=49 Score=32.56 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=29.1
Q ss_pred hHHHHHHHHh-cCCceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 84 RNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 84 ~~~im~Ave~-lg~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
+..|++.+.+ .+..+|+.|++..||+..++.-.+|+.|
T Consensus 200 ~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3577888765 4678999999999999999999999987
No 321
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.06 E-value=1.3e+02 Score=24.29 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP 142 (423)
..+..||+++-+.| .+|+.||+.+.+ ++...+..-|..|.. -|-++...+|..-..+|
T Consensus 35 ~~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~--KGlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 35 NAELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLVK--KEMLSTEKEGRKFVYRP 96 (99)
T ss_dssp CSCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH--TTSCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHHH--CCCEEEEeCCCEEEEEE
Confidence 35578999999865 799999999886 568888888888876 46777777776443333
No 322
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=24.02 E-value=41 Score=33.55 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=49.8
Q ss_pred CcccccCCCCchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 71 GRIVESDKLPADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 71 ~~~v~~~~l~~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
+..|+-.+||..+.+..+++++... +..++.++|.+-|+++.+- .+ -|-|+.. ||=.|.+++=+|.
T Consensus 197 ~~Li~LP~lPi~ld~~~~~~lk~~~~~g~~~~~~la~~lgi~v~~L----~~-----~gli~~~--~~~~~~~~~w~~~ 264 (324)
T 3qyf_A 197 NDVVILPSPPITIRPKYLDWLIRFAISGYTLSEKRAEELGIPVRLL----EA-----KMLVERK--GEDAYRLKDWVRK 264 (324)
T ss_dssp TEEEEECCCCEEECHHHHHHHHHHHHHCSEEEHHHHHHTTCCHHHH----HH-----TTSEEEE--TTTEEEECHHHHH
T ss_pred CceEEcCCCCcccCHHHHHHHHHHHhcCCCCHHHHHHHhCCCHHHH----HH-----CCCeEec--CCCceehHHHHHH
Confidence 5778889999999999999999884 7889999999999997632 22 3555554 4445666665555
No 323
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=23.95 E-value=2e+02 Score=29.61 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (423)
Q Consensus 85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F 141 (423)
.+|.+.+-+. ++.|+.+++..++|+..+++.+|..|-.-.=-.-...++|...|.+
T Consensus 22 ~~V~~~Ll~~-G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~ 77 (534)
T 2xub_A 22 EKIGVHLIRT-GSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEA 77 (534)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred HHHHHHHHhc-CCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEE
Confidence 3556666664 7899999999999999999999999987543333345567777776
No 324
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=23.53 E-value=6.2 Score=31.30 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=29.8
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 94 lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
.|.++ |+.|+|.+-|+|...+.++|..|.++ |-++.
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~--Gli~~ 67 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSE--GLVSS 67 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTS--SCCEE
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 46666 99999999999999999999999654 55554
No 325
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=23.45 E-value=1.2e+02 Score=30.11 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=45.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcChhhH
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYR 146 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G-dIlY~FP~~fR 146 (423)
..++++.+-+. ..+|+.+++...|++...|++.|..|... |-|+-...| .-+|++|+-++
T Consensus 299 ~~~ll~~l~~~-p~~t~~~~~~~~~~S~~TA~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~l~ 359 (373)
T 3eqx_A 299 SHELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVT 359 (373)
T ss_dssp CHHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHH
T ss_pred HHHHHHHHHHC-CCccHHHHHHHhCcCHHHHHHHHHHHHHC--CcEEEeCCCCceEeehHHHHH
Confidence 35677777664 46999999999999999999999999864 666544433 57899987553
No 326
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.37 E-value=1.1e+02 Score=25.05 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCc
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGD 136 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAad~~G~LqVse~Gd 136 (423)
..+-.||..+-+.+..+|+.|++...+ ++...+-.-|..|.. -|.++...+|.
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~r~~~~r 65 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK--KNLVLQIRDDR 65 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH--TTSEEEEC---
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH--CCCEEEEecCC
Confidence 356789999998766899999999997 899999888888876 47888766665
No 327
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=23.11 E-value=67 Score=29.16 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=41.2
Q ss_pred chhhHHHHHHHH-hc--CCceeehhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeccCC
Q 014499 81 ADVRNRAMDAVD-AC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEG 135 (423)
Q Consensus 81 ~~~~~~im~Ave-~l--g~rvTvgDVAa~aGL~l~~Ae~aL~a--LAad~~G~LqVse~G 135 (423)
.+.+.++.+++. +. |.-+|-||+|...|.+...+-.+|.. ++-...||==|..+|
T Consensus 90 t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p~RaVG~A~~~Np~~~~iPcHRVv~~~G 149 (174)
T 1mgt_A 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDG 149 (174)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSCTTTSCGGGEEBTTB
T ss_pred ChHHHHHHHHHHccCCCCceEeHHHHHHHhCCCHHHHHHHHHhCCCCCcCCcCeEECCCC
Confidence 578899999999 66 66788999999999993333333332 123468999999999
No 328
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=23.10 E-value=80 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHH
Q 014499 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 85 ~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
.++++.+++. ...+|+.|+|...|++...-++.+..
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4566666554 67799999999999998877665554
No 329
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.09 E-value=29 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (423)
+.+..++-++.++.| .|..|+|.+.|++....
T Consensus 9 ~~~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i 40 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKG--VSQEELADLAGLHRTYI 40 (77)
T ss_dssp HHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHH
Confidence 344455555555554 79999999999997665
No 330
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=23.00 E-value=35 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=25.1
Q ss_pred chhhHHHHHHH----HhcCCceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Av----e~lg~rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|. .+. ..+|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~ 49 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTV 49 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHH
Confidence 35667776654 455 8899999999999987654
No 331
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.96 E-value=90 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq 130 (423)
+=.++..+.+.+...|+.|+|...|++...+-+.+..|.. .|-++
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~--~GlV~ 77 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE--KGLIT 77 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh--CCCeE
Confidence 3468889998899999999999999999999999999977 46665
No 332
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=22.81 E-value=47 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~A----ve~lg~r-vTvgDVAa~aGL~l~~A 114 (423)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tl 78 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNA 78 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHH
Confidence 3556777665 4566876 89999999999987654
No 333
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=22.64 E-value=98 Score=25.08 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHH
Q 014499 81 ADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (423)
Q Consensus 81 ~~~~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~a 120 (423)
...-.++++.+++. ...+|+.|+|...|++...-++.+..
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34446677888775 66799999999999998877655443
No 334
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.62 E-value=2.1e+02 Score=28.20 Aligned_cols=69 Identities=6% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
|-..+|.+.+..+-+-=-+||+..+|..-|++.+++|+.|..|-.+..=+=..+.-.-+|+....+-|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 444567777777777778999999999999999999999999999885555667766788888766654
No 335
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.55 E-value=78 Score=26.32 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=33.7
Q ss_pred hHHHHHHHHhcC----CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 84 RNRAMDAVDACN----RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 84 ~~~im~Ave~lg----~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
+=.++..+...+ +.+|++|+|...|++...+-+.+..|..+ |-+++
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~--glVr~ 84 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD--GLVRV 84 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT--TSBC-
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEe
Confidence 346777777654 46999999999999999999999999765 66654
No 336
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.39 E-value=48 Score=24.95 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCchhhHHHHHHHHhcCCcee
Q 014499 78 KLPADVRNRAMDAVDACNRRVT 99 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~rvT 99 (423)
++..+.+++|+++++++||+..
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 6889999999999999999754
No 337
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=22.28 E-value=3.1e+02 Score=22.17 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
.+-.|+..+.+. ..+|+.|+|...|++...+-+.|..|..+ |.++-..
T Consensus 51 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~~ 98 (159)
T 3s2w_A 51 GQFPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDE--GYVFRQR 98 (159)
T ss_dssp TTHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEec
Confidence 345788888776 56999999999999999999999999875 7776543
No 338
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=21.98 E-value=81 Score=29.36 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=41.5
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY 139 (423)
|++.+..|+-++ ..+..|+.++|...|++..+++..|..|+.. |-++-..+|-|.-
T Consensus 163 ~~~~~~~l~~~l--~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~--~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 163 DMTQLAILHYLL--LNGRATVEELSDRLNLKEREVREKISEMARF--VPVKIINDNTVVL 218 (232)
T ss_dssp CTTHHHHHHHHH--HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTT--SCEEEETTTEEEE
T ss_pred CccHHHHHHHHH--hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhc--CCeEEecCCeEEe
Confidence 344555566564 3588999999999999999999999999875 4455455555543
No 339
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.92 E-value=86 Score=24.50 Aligned_cols=37 Identities=3% Similarity=0.054 Sum_probs=28.3
Q ss_pred HHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 85 ~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
.++++.+++. ...+|+.|+|...|++...-++.+...
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566666654 568999999999999988887665543
No 340
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=21.84 E-value=25 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=22.9
Q ss_pred hHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 014499 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (423)
Q Consensus 84 ~~~im~A----ve~lg~-rvTvgDVAa~aGL~l~~ 113 (423)
|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 5 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 39 (202)
T 4ac0_A 5 KSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPT 39 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchh
Confidence 4556555 455688 79999999999998754
No 341
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.80 E-value=49 Score=25.06 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCCchhhHHHHHHHHhcCCcee
Q 014499 78 KLPADVRNRAMDAVDACNRRVT 99 (423)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~rvT 99 (423)
.+..+.+++|+++++++||+..
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999999753
No 342
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=21.75 E-value=48 Score=31.66 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=38.8
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
+..|+.|+|+++|++..-.++=|+.|++ -|.|+-+++|. .|.-.+--+.
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~--~g~l~~~~~~~-~y~~t~~s~~ 118 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLAT--VGVFDDLGHDD-LFAQNALSAV 118 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSSEECSSTT-EEECCHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCCEEEeCCCc-eEecCHHHHH
Confidence 4799999999999999999999999987 67888766664 3666554443
No 343
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.64 E-value=78 Score=27.24 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (423)
Q Consensus 83 ~~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse 133 (423)
..-.|+..+... ++.+|+.|+|...|++...+-+.|..|... |.++-..
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r~~ 91 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN--GYVDVIP 91 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEecc
Confidence 345678888875 578999999999999999999999999764 7777543
No 344
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=21.47 E-value=24 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHH
Q 014499 95 NRRVTIGDVAGKAGLKLNEAQKALQAL 121 (423)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~Ae~aL~aL 121 (423)
|+..|+.+.|...|+++++..++|.++
T Consensus 47 g~~~TL~~aa~~~gid~d~l~~~L~~~ 73 (81)
T 2fi0_A 47 GRKVSLKQGSKLAGTPMDKIVRTLEAN 73 (81)
T ss_dssp HHHCBHHHHHHHHTCCHHHHHHHHHHT
T ss_pred cccCcHHHHHHHcCCCHHHHHHHHHHc
Confidence 366999999999999999998888774
No 345
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=21.38 E-value=85 Score=30.27 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
+.+|++.+.+. +++|..|+|.++||+...+.+-+..|-++
T Consensus 18 ~~~il~~l~~~-~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 18 AGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35688888875 57999999999999999999988888764
No 346
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.34 E-value=26 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=24.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCeEeeeeccCccCCC
Q 014499 260 GEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDID 299 (423)
Q Consensus 260 GDGDPN~dlEerRWk~Ig~~Ir~N~GvV~AEqlAPylD~~ 299 (423)
|.-+|+ .+++. -+.|..++.+|++-++++|||--++.+
T Consensus 1 ~~~~~~-~m~~~-~~~IL~~L~~~~~~~s~~eLA~~lgls 38 (67)
T 2heo_A 1 GSHMLS-TGDNL-EQKILQVLSDDGGPVAIFQLVKKCQVP 38 (67)
T ss_dssp ---------CHH-HHHHHHHHHHHCSCEEHHHHHHHHCSC
T ss_pred CCCCcc-cccHH-HHHHHHHHHHcCCCcCHHHHHHHHCcC
Confidence 345676 34443 356888999888889999999999975
No 347
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.19 E-value=2e+02 Score=26.20 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhHH
Q 014499 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (423)
Q Consensus 79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fRs 147 (423)
+...+++..+..+.+.=.|+++.++|..-|++.+++|+.|..+-.|..=+=..+..-.+|..+...-+.
T Consensus 338 l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~ 406 (434)
T 4b4t_Q 338 LYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQD 406 (434)
T ss_dssp HHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC------
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchh
Confidence 334455666666666777999999999999999999999999887753332344444566666655443
No 348
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.99 E-value=56 Score=29.72 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHh----cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499 82 DVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (423)
Q Consensus 82 ~~~~~im~Ave~----lg~rv-TvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~ 143 (423)
.+.+.|.+.+.. -|.++ |..++|.+-|+|...++++|..|.++ |-|+. ..|-=.|+=+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--g~i~~-~~g~G~~V~~~ 72 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQK--GAIFQ-VRGSGIFVRKH 72 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE-ETTTEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE-eCCceEEEecC
Confidence 344455555554 45667 89999999999999999999999987 55543 23333444433
No 349
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.94 E-value=93 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=37.7
Q ss_pred hHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499 84 RNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 84 ~~~im~Ave~l-g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
+-.|+..+.+. +..+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 85 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE--DYFDK 85 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT--TSSCC
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 45678888775 367999999999999999999999999775 55554
No 350
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=20.94 E-value=47 Score=29.74 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHh----cCC-ceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Ave~----lg~-rvTvgDVAa~aGL~l~~A 114 (423)
...|++|++|..+ .|+ .+|+.+||.++|++....
T Consensus 28 ~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tl 66 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSL 66 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHH
Confidence 3456777776554 476 689999999999987553
No 351
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.56 E-value=2.8e+02 Score=20.95 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred hHHHHHHHHhcCCceeehhh----hhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499 84 RNRAMDAVDACNRRVTIGDV----AGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (423)
Q Consensus 84 ~~~im~Ave~lg~rvTvgDV----Aa~aGL~l~~Ae~aL~aLAad~~G~LqVse~ 134 (423)
+-.|+.++.+. ..+|+.|+ |...|++...+.+.|..|..+ |-++-..+
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~--gli~r~~~ 61 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE--GFVKERQE 61 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCEEEEec
Confidence 45678888764 56999999 899999999999999999886 66664433
No 352
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=20.48 E-value=1.5e+02 Score=23.59 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=38.7
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCceEe
Q 014499 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEV 131 (423)
Q Consensus 80 ~~~~~~~im~Ave~lg~rvTvgDVAa~a-GL~l~~Ae~aL~aLAad~~G~LqV 131 (423)
....+-.|+..+.+ +..|++|+|... |++...+-+.|..|-.+ |-++-
T Consensus 20 ~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~--GlI~r 68 (112)
T 1z7u_A 20 NGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKD--GLVHR 68 (112)
T ss_dssp CSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH--TSEEE
T ss_pred cCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHC--CCEEE
Confidence 34455678888875 568999999999 99999999999999876 55553
No 353
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.46 E-value=92 Score=30.48 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad 124 (423)
-+.+|++.+.+.+ .+|..|+|.++||+...+.+-+..|..+
T Consensus 40 n~~~il~~l~~~~-~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 40 NAGRVYKLIDQKG-PISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4456899998865 7999999999999999999988888774
No 354
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=20.15 E-value=65 Score=29.56 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (423)
Q Consensus 82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f 145 (423)
..+-.|.+++.+ +..|+.|+|+++|++..-.++=|+.|++ -|.|+.. +| .|.-.+.-
T Consensus 26 ~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~~-~~--~y~~t~~~ 82 (335)
T 2r3s_A 26 AVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTKQ-AE--GYRLTSDS 82 (335)
T ss_dssp HHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE-TT--EEEECHHH
T ss_pred HHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEec-CC--EEecCHHH
Confidence 344455666654 6799999999999999999888888876 5677653 23 56655544
No 355
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.13 E-value=80 Score=22.97 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHH
Q 014499 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (423)
Q Consensus 81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~A 114 (423)
|++-.++-+..+++| .|..|+|.++|++....
T Consensus 1 m~~~~~lk~~r~~~g--lsq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 1 MELSNELKVERIRLS--LTAKSVAEEMGISRQQL 32 (77)
T ss_dssp CCHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHH
Confidence 345566666666664 68999999999987665
No 356
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=20.11 E-value=68 Score=25.78 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs 132 (423)
.+-.|+..+.+ ...+|+.|+|...|++...+-+.+..|..+ |.++-.
T Consensus 37 ~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 83 (140)
T 3hsr_A 37 TGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEKK--DYVVRT 83 (140)
T ss_dssp HHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCeEec
Confidence 34567777765 458999999999999999999999999765 777654
No 357
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=20.02 E-value=30 Score=29.72 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHh
Q 014499 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAA 123 (423)
Q Consensus 85 ~~im~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAa 123 (423)
..|++.++..|| +.++.++|...|++.+++++.|..+-+
T Consensus 26 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ~ 65 (130)
T 2k9m_A 26 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 65 (130)
T ss_dssp HHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 446777788888 788999999999999999999887764
No 358
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=20.01 E-value=94 Score=24.40 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEecc-CCcEEEEc
Q 014499 83 VRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSD-EGDVLYVF 141 (423)
Q Consensus 83 ~~~~im~Ave~lg~rvTvgDVAa~aG----L~l~~Ae~aL~aLAad~~G~LqVse-~GdIlY~F 141 (423)
.+-.|+..+.+ ++.+|+.|+|...| ++...+.+-|..|... |-++... +...+|+.
T Consensus 11 ~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~--Glv~r~~~~rr~~~~~ 71 (123)
T 1okr_A 11 AEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK--GFIDRKKDNKIFQYYS 71 (123)
T ss_dssp HHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--TSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC--CCeEEEecCCeEEEEE
Confidence 45678999987 45799999999999 8899999999998875 6666544 33344443
Done!