Query 014500
Match_columns 423
No_of_seqs 343 out of 1703
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 100.0 2E-108 4E-113 830.1 31.9 401 1-404 4-415 (493)
2 PF07576 BRAP2: BRCA1-associat 100.0 3.3E-31 7.2E-36 228.3 13.6 104 57-161 4-108 (110)
3 PF02148 zf-UBP: Zn-finger in 99.7 9.3E-18 2E-22 130.9 4.1 60 221-280 1-61 (63)
4 KOG0944 Ubiquitin-specific pro 99.4 2.4E-13 5.2E-18 145.0 4.6 64 215-278 176-250 (763)
5 COG5207 UBP14 Isopeptidase T [ 99.3 2.4E-12 5.1E-17 134.0 4.4 62 217-278 172-243 (749)
6 smart00290 ZnF_UBP Ubiquitin C 99.2 2.6E-11 5.7E-16 89.8 3.8 49 220-268 1-49 (50)
7 cd02669 Peptidase_C19M A subfa 99.0 4.3E-10 9.3E-15 117.7 5.1 61 218-278 16-76 (440)
8 KOG1873 Ubiquitin-specific pro 98.8 3E-09 6.6E-14 115.1 3.2 88 189-276 45-143 (877)
9 PF13639 zf-RING_2: Ring finge 98.8 2E-09 4.3E-14 77.8 1.0 41 169-210 2-44 (44)
10 KOG0804 Cytoplasmic Zn-finger 98.6 9.4E-08 2E-12 98.9 7.9 69 321-390 312-380 (493)
11 KOG4628 Predicted E3 ubiquitin 98.4 8.8E-08 1.9E-12 97.4 2.9 57 168-225 230-289 (348)
12 PF12678 zf-rbx1: RING-H2 zinc 98.3 2.7E-07 5.9E-12 74.1 2.5 44 167-210 19-73 (73)
13 PHA02929 N1R/p28-like protein; 98.2 4.8E-07 1E-11 88.1 2.7 48 166-213 173-226 (238)
14 PF15227 zf-C3HC4_4: zinc fing 98.2 4.6E-07 9.9E-12 65.5 1.8 36 170-209 1-42 (42)
15 COG5540 RING-finger-containing 98.1 9.9E-07 2.2E-11 87.7 1.7 45 168-213 324-371 (374)
16 PLN03208 E3 ubiquitin-protein 98.1 2.2E-06 4.7E-11 81.0 3.2 45 165-213 16-78 (193)
17 KOG0317 Predicted E3 ubiquitin 97.9 4.2E-06 9.1E-11 82.9 2.2 49 162-214 233-284 (293)
18 PF13923 zf-C3HC4_2: Zinc fing 97.9 3.2E-06 7E-11 59.6 1.0 37 170-209 1-39 (39)
19 cd00162 RING RING-finger (Real 97.9 4E-06 8.6E-11 58.5 1.5 40 169-211 1-43 (45)
20 PF13920 zf-C3HC4_3: Zinc fing 97.9 6.4E-06 1.4E-10 61.0 2.1 43 166-212 1-46 (50)
21 PF14634 zf-RING_5: zinc-RING 97.8 9.6E-06 2.1E-10 58.8 2.3 42 169-211 1-44 (44)
22 PHA02926 zinc finger-like prot 97.8 7.4E-06 1.6E-10 78.7 1.7 48 165-213 168-229 (242)
23 PF00097 zf-C3HC4: Zinc finger 97.7 1.2E-05 2.6E-10 56.8 1.3 37 170-209 1-41 (41)
24 KOG0823 Predicted E3 ubiquitin 97.7 1.5E-05 3.1E-10 77.0 1.5 44 166-213 46-94 (230)
25 smart00184 RING Ring finger. E 97.7 2.4E-05 5.2E-10 52.6 2.2 36 170-209 1-39 (39)
26 TIGR00599 rad18 DNA repair pro 97.6 2.2E-05 4.8E-10 81.7 1.9 47 163-213 22-70 (397)
27 KOG0320 Predicted E3 ubiquitin 97.6 2.3E-05 5E-10 73.0 1.7 45 165-211 129-175 (187)
28 KOG2177 Predicted E3 ubiquitin 97.5 3.6E-05 7.9E-10 72.2 0.8 44 163-210 9-54 (386)
29 PF12861 zf-Apc11: Anaphase-pr 97.4 8.2E-05 1.8E-09 61.8 2.3 42 169-212 34-80 (85)
30 smart00504 Ubox Modified RING 97.4 9.4E-05 2E-09 56.5 2.2 42 168-213 2-45 (63)
31 PF13445 zf-RING_UBOX: RING-ty 97.4 5.9E-05 1.3E-09 55.0 0.8 32 170-202 1-32 (43)
32 PF14835 zf-RING_6: zf-RING of 97.3 0.0001 2.2E-09 58.2 1.3 45 165-212 5-49 (65)
33 KOG2164 Predicted E3 ubiquitin 97.3 0.00015 3.2E-09 76.8 2.5 43 167-213 186-235 (513)
34 KOG0802 E3 ubiquitin ligase [P 97.1 0.00014 3E-09 78.6 0.4 47 166-212 290-339 (543)
35 PF14259 RRM_6: RNA recognitio 97.1 0.0031 6.7E-08 48.5 7.7 66 68-134 1-66 (70)
36 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00028 6E-09 72.3 1.2 47 166-212 286-343 (491)
37 TIGR00570 cdk7 CDK-activating 96.8 0.00071 1.5E-08 68.3 2.9 46 167-213 3-53 (309)
38 COG5574 PEX10 RING-finger-cont 96.8 0.00071 1.5E-08 66.6 2.4 44 166-213 214-261 (271)
39 COG5432 RAD18 RING-finger-cont 96.8 0.00045 9.7E-09 68.9 0.8 47 163-213 21-69 (391)
40 PF00076 RRM_1: RNA recognitio 96.7 0.011 2.4E-07 44.6 7.7 66 68-134 1-66 (70)
41 COG5194 APC11 Component of SCF 96.6 0.0013 2.8E-08 54.1 2.1 46 168-213 32-80 (88)
42 smart00744 RINGv The RING-vari 96.6 0.0012 2.5E-08 49.4 1.7 40 169-210 1-49 (49)
43 KOG0828 Predicted E3 ubiquitin 96.4 0.00074 1.6E-08 71.4 -0.1 48 165-212 569-632 (636)
44 KOG0287 Postreplication repair 96.4 0.00066 1.4E-08 68.9 -0.7 47 163-213 19-67 (442)
45 cd00590 RRM RRM (RNA recogniti 96.4 0.025 5.4E-07 41.8 8.1 67 68-135 2-68 (74)
46 KOG1734 Predicted RING-contain 96.2 0.002 4.4E-08 63.7 1.4 48 165-212 222-279 (328)
47 PF04564 U-box: U-box domain; 95.9 0.0037 7.9E-08 50.1 1.6 41 167-211 4-47 (73)
48 smart00362 RRM_2 RNA recogniti 95.9 0.045 9.7E-07 40.2 7.4 65 68-134 2-66 (72)
49 KOG0827 Predicted E3 ubiquitin 95.8 0.0029 6.4E-08 65.3 0.7 43 168-210 5-52 (465)
50 KOG0825 PHD Zn-finger protein 95.8 0.0026 5.7E-08 70.3 0.1 48 165-213 121-170 (1134)
51 PF11793 FANCL_C: FANCL C-term 95.7 0.0038 8.3E-08 49.9 0.7 44 168-211 3-63 (70)
52 KOG0978 E3 ubiquitin ligase in 95.6 0.0029 6.2E-08 70.0 -0.3 48 164-215 640-690 (698)
53 KOG1493 Anaphase-promoting com 95.1 0.0041 8.8E-08 50.8 -0.9 28 186-213 48-80 (84)
54 smart00360 RRM RNA recognition 95.0 0.1 2.2E-06 38.0 6.5 62 72-134 3-65 (71)
55 COG5219 Uncharacterized conser 94.9 0.0052 1.1E-07 69.3 -1.1 47 166-212 1468-1521(1525)
56 KOG1039 Predicted E3 ubiquitin 94.4 0.015 3.2E-07 59.9 0.9 47 165-212 159-219 (344)
57 PF04059 RRM_2: RNA recognitio 94.4 0.3 6.5E-06 41.7 8.7 79 66-144 2-83 (97)
58 KOG0311 Predicted E3 ubiquitin 94.3 0.0044 9.6E-08 63.3 -3.1 47 163-212 39-88 (381)
59 KOG0824 Predicted E3 ubiquitin 94.1 0.029 6.2E-07 56.5 2.2 45 165-213 5-52 (324)
60 KOG0297 TNF receptor-associate 93.9 0.034 7.3E-07 58.1 2.3 47 164-213 18-66 (391)
61 KOG2930 SCF ubiquitin ligase, 93.4 0.025 5.3E-07 48.8 0.3 25 187-211 79-105 (114)
62 PF11789 zf-Nse: Zinc-finger o 93.1 0.043 9.3E-07 42.3 1.2 41 165-208 9-53 (57)
63 KOG1645 RING-finger-containing 92.9 0.046 1E-06 57.0 1.5 46 167-212 4-54 (463)
64 PLN03134 glycine-rich RNA-bind 92.5 1.1 2.3E-05 40.4 9.6 70 64-134 33-103 (144)
65 PF05883 Baculo_RING: Baculovi 92.3 0.042 9.2E-07 49.4 0.2 35 167-202 26-66 (134)
66 PF10367 Vps39_2: Vacuolar sor 91.9 0.099 2.1E-06 43.6 1.9 33 165-199 76-108 (109)
67 KOG1941 Acetylcholine receptor 91.0 0.067 1.5E-06 55.7 0.1 46 167-212 365-414 (518)
68 KOG1785 Tyrosine kinase negati 88.4 0.18 3.9E-06 52.7 0.8 41 168-212 370-414 (563)
69 PRK10884 SH3 domain-containing 88.3 1.6 3.5E-05 42.0 7.2 88 320-410 91-178 (206)
70 KOG3970 Predicted E3 ubiquitin 88.0 0.26 5.6E-06 48.1 1.6 46 165-212 48-103 (299)
71 KOG4445 Uncharacterized conser 87.6 0.16 3.6E-06 51.3 -0.0 36 165-201 113-148 (368)
72 KOG2879 Predicted E3 ubiquitin 87.6 0.49 1.1E-05 47.4 3.2 45 165-212 237-285 (298)
73 KOG4159 Predicted E3 ubiquitin 87.3 0.25 5.4E-06 51.9 1.1 45 165-213 82-128 (398)
74 PF14570 zf-RING_4: RING/Ubox 86.7 0.4 8.6E-06 36.0 1.6 43 170-212 1-46 (48)
75 KOG4739 Uncharacterized protei 86.6 6.9 0.00015 38.5 10.5 42 169-212 5-46 (233)
76 COG5152 Uncharacterized conser 85.8 0.25 5.5E-06 47.3 0.1 28 169-200 198-225 (259)
77 KOG1940 Zn-finger protein [Gen 85.5 0.45 9.7E-06 47.8 1.8 44 168-211 159-204 (276)
78 TIGR01659 sex-lethal sex-letha 85.3 4.8 0.0001 41.6 9.2 73 61-134 103-176 (346)
79 KOG1952 Transcription factor N 85.3 0.41 9E-06 54.1 1.5 49 166-214 190-247 (950)
80 PF07800 DUF1644: Protein of u 84.4 0.49 1.1E-05 43.8 1.4 37 166-202 1-46 (162)
81 PRK08476 F0F1 ATP synthase sub 84.3 16 0.00035 32.8 11.0 44 321-364 54-97 (141)
82 TIGR01661 ELAV_HUD_SF ELAV/HuD 84.2 6.4 0.00014 39.4 9.4 69 65-134 269-338 (352)
83 TIGR01649 hnRNP-L_PTB hnRNP-L/ 84.0 9.2 0.0002 40.9 11.0 85 64-152 393-478 (481)
84 TIGR01622 SF-CC1 splicing fact 83.1 7.1 0.00015 40.8 9.5 70 63-134 87-157 (457)
85 PF09731 Mitofilin: Mitochondr 83.0 11 0.00023 41.2 11.2 32 323-354 319-350 (582)
86 KOG2660 Locus-specific chromos 82.8 0.25 5.4E-06 50.4 -1.3 46 164-212 12-59 (331)
87 KOG2932 E3 ubiquitin ligase in 81.9 0.43 9.3E-06 48.5 -0.1 66 168-244 91-156 (389)
88 TIGR01622 SF-CC1 splicing fact 81.3 6 0.00013 41.3 8.2 69 65-134 186-255 (457)
89 PF12906 RINGv: RING-variant d 81.1 0.81 1.7E-05 33.8 1.2 38 170-209 1-47 (47)
90 PF00038 Filament: Intermediat 80.8 20 0.00044 35.6 11.4 71 320-391 167-243 (312)
91 PF13893 RRM_5: RNA recognitio 80.7 3.9 8.6E-05 30.0 4.9 39 92-134 10-48 (56)
92 KOG2114 Vacuolar assembly/sort 80.7 0.83 1.8E-05 51.8 1.6 42 166-211 839-880 (933)
93 KOG4265 Predicted E3 ubiquitin 79.8 2 4.4E-05 44.3 4.0 42 167-212 290-334 (349)
94 TIGR01661 ELAV_HUD_SF ELAV/HuD 77.8 11 0.00023 37.8 8.4 69 65-134 3-72 (352)
95 TIGR01628 PABP-1234 polyadenyl 76.8 9.8 0.00021 41.1 8.4 69 65-134 285-353 (562)
96 PHA02825 LAP/PHD finger-like p 76.8 1.7 3.6E-05 40.4 2.1 45 164-213 5-58 (162)
97 KOG3002 Zn finger protein [Gen 76.1 4.3 9.3E-05 41.3 5.0 108 161-281 42-187 (299)
98 TIGR01628 PABP-1234 polyadenyl 75.9 11 0.00025 40.6 8.6 69 64-133 177-245 (562)
99 PF04641 Rtf2: Rtf2 RING-finge 75.2 4 8.8E-05 40.3 4.5 49 165-213 111-160 (260)
100 KOG1001 Helicase-like transcri 75.0 1.5 3.3E-05 49.2 1.6 40 168-212 455-498 (674)
101 KOG2026 Spindle pole body prot 74.8 3.4 7.3E-05 43.4 3.9 72 218-290 29-100 (442)
102 KOG1813 Predicted E3 ubiquitin 74.7 1.4 3E-05 44.6 1.1 39 169-211 243-283 (313)
103 TIGR01649 hnRNP-L_PTB hnRNP-L/ 74.5 18 0.00039 38.7 9.5 64 66-133 97-160 (481)
104 PF08581 Tup_N: Tup N-terminal 74.5 48 0.001 27.4 10.7 35 321-355 3-39 (79)
105 KOG1002 Nucleotide excision re 73.9 0.84 1.8E-05 49.4 -0.7 43 165-211 534-583 (791)
106 PRK14890 putative Zn-ribbon RN 71.6 1.6 3.5E-05 34.1 0.6 32 205-240 27-58 (59)
107 KOG3039 Uncharacterized conser 71.5 2.5 5.4E-05 42.0 2.0 46 166-211 220-267 (303)
108 PF11180 DUF2968: Protein of u 71.4 51 0.0011 31.6 10.6 33 326-358 97-129 (192)
109 COG2888 Predicted Zn-ribbon RN 70.8 1.7 3.7E-05 34.1 0.5 32 205-240 29-60 (61)
110 COG5175 MOT2 Transcriptional r 70.5 2.1 4.5E-05 44.2 1.2 48 165-212 12-62 (480)
111 TIGR01659 sex-lethal sex-letha 70.5 21 0.00045 37.0 8.5 70 64-134 192-262 (346)
112 PHA02862 5L protein; Provision 69.6 2.4 5.1E-05 38.9 1.3 42 167-213 2-52 (156)
113 KOG1571 Predicted E3 ubiquitin 68.8 3.5 7.6E-05 42.7 2.5 43 165-212 303-345 (355)
114 TIGR01642 U2AF_lg U2 snRNP aux 67.6 23 0.0005 37.4 8.5 69 65-134 295-364 (509)
115 TIGR01648 hnRNP-R-Q heterogene 67.4 22 0.00048 39.4 8.4 70 63-133 56-125 (578)
116 PF05529 Bap31: B-cell recepto 67.4 24 0.00053 32.9 7.7 36 366-401 156-192 (192)
117 COG5222 Uncharacterized conser 67.2 2.4 5.3E-05 43.1 0.9 41 168-211 275-318 (427)
118 KOG4185 Predicted E3 ubiquitin 67.0 3.3 7.1E-05 41.1 1.8 46 167-212 3-53 (296)
119 PHA03096 p28-like protein; Pro 66.8 2.4 5.2E-05 42.8 0.8 34 168-202 179-217 (284)
120 PLN03120 nucleic acid binding 66.6 28 0.00061 34.9 8.2 67 65-135 4-70 (260)
121 smart00160 RanBD Ran-binding d 65.1 9.1 0.0002 34.0 4.1 108 14-128 11-128 (130)
122 PF09798 LCD1: DNA damage chec 64.2 17 0.00037 40.8 6.8 34 364-397 26-60 (654)
123 PRK13729 conjugal transfer pil 63.1 40 0.00087 36.5 9.0 61 318-394 60-121 (475)
124 KOG3161 Predicted E3 ubiquitin 63.0 1.5 3.3E-05 48.5 -1.5 49 163-212 7-55 (861)
125 KOG4172 Predicted E3 ubiquitin 62.8 1.7 3.8E-05 33.6 -0.8 41 168-212 8-52 (62)
126 PF07045 DUF1330: Protein of u 62.5 8.7 0.00019 29.8 3.1 22 105-126 37-58 (65)
127 KOG3268 Predicted E3 ubiquitin 62.0 3.8 8.3E-05 38.9 1.1 38 165-202 163-203 (234)
128 PF11166 DUF2951: Protein of u 61.4 2.5 5.4E-05 36.0 -0.2 77 341-417 4-89 (98)
129 PF09416 UPF1_Zn_bind: RNA hel 59.3 8.9 0.00019 35.5 3.0 76 220-295 2-90 (152)
130 KOG4367 Predicted Zn-finger pr 58.2 5 0.00011 42.8 1.3 33 165-201 2-34 (699)
131 COG0216 PrfA Protein chain rel 58.0 58 0.0013 34.0 8.8 38 377-414 82-125 (363)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 57.8 18 0.00038 33.9 4.8 82 67-152 9-96 (176)
133 PF06906 DUF1272: Protein of u 57.1 10 0.00022 29.4 2.5 43 166-210 4-48 (57)
134 PF10146 zf-C4H2: Zinc finger- 56.8 1.5E+02 0.0032 29.2 11.2 74 323-399 29-103 (230)
135 KOG1705 Uncharacterized conser 56.6 6.2 0.00014 33.6 1.4 39 203-241 27-66 (110)
136 PF12999 PRKCSH-like: Glucosid 56.1 1E+02 0.0022 29.2 9.5 27 321-347 116-142 (176)
137 KOG1867 Ubiquitin-specific pro 56.1 4.6 9.9E-05 43.8 0.6 62 217-280 42-105 (492)
138 PRK10778 dksA RNA polymerase-b 55.2 76 0.0016 29.2 8.3 21 382-402 88-108 (151)
139 smart00361 RRM_1 RNA recogniti 54.9 36 0.00078 26.3 5.4 43 92-134 18-64 (70)
140 PF03462 PCRF: PCRF domain; I 54.8 46 0.001 28.9 6.6 50 364-414 10-59 (115)
141 PRK10722 hypothetical protein; 54.8 55 0.0012 32.6 7.8 35 368-402 180-214 (247)
142 PF12709 Kinetocho_Slk19: Cent 54.8 85 0.0018 26.5 7.8 23 368-390 60-82 (87)
143 TIGR01642 U2AF_lg U2 snRNP aux 54.3 37 0.00079 35.9 7.1 66 63-134 173-249 (509)
144 COG2433 Uncharacterized conser 54.0 1.1E+02 0.0025 34.2 10.7 76 321-397 428-508 (652)
145 PF00638 Ran_BP1: RanBP1 domai 53.3 49 0.0011 28.4 6.5 83 37-128 27-117 (122)
146 PF09731 Mitofilin: Mitochondr 53.1 92 0.002 34.0 10.1 20 341-360 311-330 (582)
147 PRK05759 F0F1 ATP synthase sub 53.0 1.7E+02 0.0036 26.1 10.3 9 346-354 61-69 (156)
148 COG1579 Zn-ribbon protein, pos 52.5 1.3E+02 0.0028 29.9 9.9 48 373-420 158-209 (239)
149 smart00502 BBC B-Box C-termina 52.5 1.3E+02 0.0029 24.8 11.0 58 344-402 46-107 (127)
150 PF08172 CASP_C: CASP C termin 52.2 43 0.00094 33.2 6.7 54 340-395 85-138 (248)
151 PF08826 DMPK_coil: DMPK coile 51.8 1.2E+02 0.0025 23.9 8.4 24 368-391 29-52 (61)
152 KOG4362 Transcriptional regula 51.5 4.8 0.0001 45.1 -0.1 44 165-212 19-67 (684)
153 PRK13454 F0F1 ATP synthase sub 51.1 1.5E+02 0.0031 27.8 9.8 25 336-360 78-102 (181)
154 PF12773 DZR: Double zinc ribb 50.6 18 0.00039 26.3 2.9 19 219-237 30-50 (50)
155 PF06005 DUF904: Protein of un 50.5 1.1E+02 0.0024 24.7 7.6 30 372-401 40-70 (72)
156 cd00835 RanBD Ran-binding doma 50.2 53 0.0011 28.5 6.3 100 21-129 10-119 (122)
157 PRK14559 putative protein seri 49.8 13 0.00027 41.8 2.8 53 169-232 3-56 (645)
158 TIGR01648 hnRNP-R-Q heterogene 49.7 61 0.0013 36.0 8.0 64 64-134 232-296 (578)
159 KOG3800 Predicted E3 ubiquitin 49.2 9.7 0.00021 38.6 1.7 43 169-212 2-49 (300)
160 PF04576 Zein-binding: Zein-bi 49.1 1E+02 0.0022 26.4 7.5 27 334-360 3-29 (94)
161 PLN03121 nucleic acid binding 48.9 92 0.002 31.0 8.3 68 64-135 4-71 (243)
162 PRK08476 F0F1 ATP synthase sub 48.8 1.5E+02 0.0032 26.6 9.1 32 334-365 52-83 (141)
163 PF09304 Cortex-I_coil: Cortex 48.6 1.5E+02 0.0033 26.0 8.6 49 339-391 49-99 (107)
164 KOG1100 Predicted E3 ubiquitin 48.4 11 0.00023 36.5 1.7 37 170-212 161-198 (207)
165 KOG1428 Inhibitor of type V ad 47.6 8.9 0.00019 46.5 1.2 41 169-211 3488-3541(3738)
166 PF10224 DUF2205: Predicted co 47.5 59 0.0013 27.0 5.7 25 368-392 34-58 (80)
167 PF12210 Hrs_helical: Hepatocy 47.4 79 0.0017 27.2 6.6 33 322-355 39-71 (96)
168 PF05600 DUF773: Protein of un 47.4 83 0.0018 34.4 8.5 31 369-399 465-496 (507)
169 smart00030 CLb CLUSTERIN Beta 46.9 65 0.0014 31.2 6.7 22 370-391 42-64 (206)
170 COG0724 RNA-binding proteins ( 46.7 96 0.0021 28.0 7.8 70 65-135 115-185 (306)
171 KOG1457 RNA binding protein (c 46.4 96 0.0021 30.8 7.9 84 64-153 33-117 (284)
172 PRK13454 F0F1 ATP synthase sub 46.4 2.1E+02 0.0046 26.6 10.1 22 321-342 78-99 (181)
173 KOG4660 Protein Mei2, essentia 46.0 24 0.00051 38.7 4.0 65 65-134 75-139 (549)
174 KOG0298 DEAD box-containing he 45.6 4.7 0.0001 47.9 -1.3 47 163-212 1149-1197(1394)
175 PF13815 Dzip-like_N: Iguana/D 45.4 1.6E+02 0.0035 25.6 8.5 20 323-342 62-81 (118)
176 KOG0241 Kinesin-like protein [ 45.1 1.6E+02 0.0035 35.0 10.4 74 323-396 584-685 (1714)
177 PRK14873 primosome assembly pr 45.1 13 0.00028 41.8 2.0 35 205-239 394-431 (665)
178 PF05715 zf-piccolo: Piccolo Z 44.9 15 0.00033 28.9 1.7 19 220-238 32-57 (61)
179 PRK05589 peptide chain release 44.7 1.6E+02 0.0035 30.5 9.7 15 400-414 84-98 (325)
180 PF14197 Cep57_CLD_2: Centroso 44.7 1.6E+02 0.0035 23.5 8.2 26 370-395 39-65 (69)
181 PHA00626 hypothetical protein 44.5 14 0.0003 28.9 1.5 33 205-241 2-34 (59)
182 KOG1814 Predicted E3 ubiquitin 44.5 11 0.00025 39.9 1.4 47 165-212 182-238 (445)
183 PRK10884 SH3 domain-containing 44.3 2.6E+02 0.0056 27.0 10.5 80 321-403 99-180 (206)
184 cd00350 rubredoxin_like Rubred 44.3 10 0.00023 25.8 0.7 10 229-238 16-25 (33)
185 PF07798 DUF1640: Protein of u 44.2 2.2E+02 0.0047 26.4 9.8 25 334-358 44-68 (177)
186 PF14446 Prok-RING_1: Prokaryo 43.9 18 0.00038 28.0 2.0 32 166-197 4-35 (54)
187 PF07851 TMPIT: TMPIT-like pro 43.9 95 0.0021 32.2 7.8 27 324-355 6-32 (330)
188 PF14369 zf-RING_3: zinc-finge 43.8 10 0.00022 26.5 0.6 15 267-281 1-15 (35)
189 KOG0825 PHD Zn-finger protein 43.7 8.6 0.00019 43.8 0.4 49 165-213 94-153 (1134)
190 cd00890 Prefoldin Prefoldin is 43.7 1.3E+02 0.0029 25.5 7.8 41 338-391 3-43 (129)
191 KOG4275 Predicted E3 ubiquitin 43.2 9 0.0002 39.0 0.4 40 166-211 299-339 (350)
192 PF04799 Fzo_mitofusin: fzo-li 43.1 1.2E+02 0.0027 28.6 7.8 46 347-394 115-161 (171)
193 COG3923 PriC Primosomal replic 43.1 1.3E+02 0.0028 28.4 7.8 51 340-390 112-166 (175)
194 KOG2034 Vacuolar sorting prote 42.9 10 0.00022 43.6 0.8 35 165-201 815-849 (911)
195 KOG3053 Uncharacterized conser 42.9 7.4 0.00016 38.9 -0.3 48 166-213 19-81 (293)
196 PF14077 WD40_alt: Alternative 42.4 9.8 0.00021 28.4 0.4 29 374-402 14-42 (48)
197 PRK06569 F0F1 ATP synthase sub 42.4 1.3E+02 0.0028 27.9 7.8 26 335-360 56-81 (155)
198 COG5236 Uncharacterized conser 42.4 12 0.00027 38.9 1.2 44 165-212 59-106 (493)
199 PF09986 DUF2225: Uncharacteri 42.3 19 0.00041 34.7 2.4 13 229-241 47-59 (214)
200 PF14257 DUF4349: Domain of un 41.8 1.6E+02 0.0035 28.7 9.0 63 324-391 127-189 (262)
201 COG4985 ABC-type phosphate tra 41.7 2.1E+02 0.0045 28.6 9.3 23 321-343 177-199 (289)
202 COG3813 Uncharacterized protei 41.6 21 0.00045 29.3 2.2 43 167-211 5-49 (84)
203 KOG1962 B-cell receptor-associ 41.4 74 0.0016 31.1 6.3 13 332-344 136-148 (216)
204 PRK06328 type III secretion sy 41.2 2.5E+02 0.0054 27.2 10.0 7 330-336 24-30 (223)
205 KOG2196 Nuclear porin [Nuclear 41.0 1.2E+02 0.0027 30.2 7.8 32 320-355 72-103 (254)
206 PF03992 ABM: Antibiotic biosy 40.6 1.1E+02 0.0023 23.0 6.1 37 89-125 32-68 (78)
207 PF01093 Clusterin: Clusterin; 39.9 62 0.0013 34.8 6.0 32 360-392 27-59 (436)
208 PRK09174 F0F1 ATP synthase sub 39.7 2.6E+02 0.0057 26.8 9.8 30 334-363 98-127 (204)
209 PHA03395 p10 fibrous body prot 39.7 32 0.0007 29.0 3.1 33 366-398 13-45 (87)
210 KOG4692 Predicted E3 ubiquitin 39.6 15 0.00032 38.4 1.3 44 165-212 420-465 (489)
211 PRK04023 DNA polymerase II lar 39.6 24 0.00051 41.5 3.0 55 183-239 618-672 (1121)
212 PHA02562 46 endonuclease subun 39.5 3.5E+02 0.0076 29.0 11.8 20 371-390 379-398 (562)
213 TIGR02420 dksA RNA polymerase- 39.1 2.1E+02 0.0046 24.5 8.3 19 384-402 59-77 (110)
214 PF05531 NPV_P10: Nucleopolyhe 38.8 38 0.00083 27.8 3.3 20 367-386 14-33 (75)
215 TIGR01645 half-pint poly-U bin 38.6 1.4E+02 0.003 33.6 8.6 70 65-135 204-274 (612)
216 cd00632 Prefoldin_beta Prefold 38.4 2.4E+02 0.0053 23.7 10.2 18 337-354 23-40 (105)
217 PRK14471 F0F1 ATP synthase sub 38.1 3.1E+02 0.0066 24.8 10.3 9 325-333 59-67 (164)
218 TIGR03752 conj_TIGR03752 integ 37.8 2.8E+02 0.006 30.3 10.4 34 358-391 96-129 (472)
219 PF07889 DUF1664: Protein of u 37.5 2.6E+02 0.0057 25.1 8.7 56 336-391 56-116 (126)
220 PF00430 ATP-synt_B: ATP synth 37.2 2.4E+02 0.0053 24.0 8.4 29 335-363 45-73 (132)
221 PF09403 FadA: Adhesion protei 37.2 2.2E+02 0.0048 25.5 8.2 22 320-343 25-46 (126)
222 PF01486 K-box: K-box region; 36.9 2.5E+02 0.0054 23.4 8.9 29 370-398 67-95 (100)
223 PRK13453 F0F1 ATP synthase sub 36.8 3.4E+02 0.0074 25.0 10.3 21 337-357 66-86 (173)
224 TIGR01069 mutS2 MutS2 family p 36.4 2.2E+02 0.0047 32.8 10.0 18 337-354 518-535 (771)
225 COG4026 Uncharacterized protei 36.4 1.8E+02 0.0039 28.9 8.0 65 321-386 141-206 (290)
226 COG5470 Uncharacterized conser 36.3 28 0.00062 29.8 2.3 18 109-126 55-72 (96)
227 KOG0995 Centromere-associated 36.3 2.8E+02 0.0061 30.9 10.3 23 336-358 282-304 (581)
228 PF15188 CCDC-167: Coiled-coil 36.0 1.8E+02 0.0039 24.5 6.9 50 346-395 17-67 (85)
229 PRK11637 AmiB activator; Provi 35.9 3.5E+02 0.0076 28.5 10.9 21 370-390 102-122 (428)
230 KOG0250 DNA repair protein RAD 35.8 2.8E+02 0.006 33.2 10.6 35 323-357 345-388 (1074)
231 PF10212 TTKRSYEDQ: Predicted 35.4 1.2E+02 0.0027 33.2 7.4 33 322-355 409-441 (518)
232 COG1592 Rubrerythrin [Energy p 35.3 17 0.00037 34.0 0.9 12 228-239 147-158 (166)
233 PRK00409 recombination and DNA 35.3 2.4E+02 0.0053 32.5 10.2 15 397-411 637-651 (782)
234 PF14584 DUF4446: Protein of u 35.0 1E+02 0.0022 28.3 5.9 75 335-413 21-96 (151)
235 PF10498 IFT57: Intra-flagella 34.8 1.9E+02 0.0041 30.3 8.5 25 331-355 260-284 (359)
236 CHL00118 atpG ATP synthase CF0 34.7 3.5E+02 0.0075 24.4 10.3 26 336-361 69-94 (156)
237 cd07645 I-BAR_IMD_BAIAP2L1 Inv 34.7 4.5E+02 0.0097 26.0 10.4 34 327-361 73-107 (226)
238 PRK10220 hypothetical protein; 34.3 29 0.00063 30.5 2.1 12 228-239 18-29 (111)
239 PF01991 vATP-synt_E: ATP synt 34.3 3.6E+02 0.0078 24.5 11.8 29 328-356 18-46 (198)
240 TIGR00595 priA primosomal prot 34.2 26 0.00056 38.0 2.2 35 205-239 224-262 (505)
241 cd00729 rubredoxin_SM Rubredox 34.0 20 0.00044 24.7 0.9 13 230-242 2-14 (34)
242 KOG0117 Heterogeneous nuclear 33.9 2E+02 0.0043 31.2 8.5 72 62-134 80-152 (506)
243 PRK06231 F0F1 ATP synthase sub 33.8 4.2E+02 0.009 25.3 10.1 14 325-338 99-112 (205)
244 PF08747 DUF1788: Domain of un 33.5 1.8E+02 0.0039 25.9 7.0 13 405-417 64-76 (126)
245 PRK06231 F0F1 ATP synthase sub 33.5 3.8E+02 0.0082 25.6 9.8 21 339-359 98-118 (205)
246 TIGR00686 phnA alkylphosphonat 33.4 29 0.00063 30.4 1.9 12 228-239 17-28 (109)
247 PRK00409 recombination and DNA 33.4 3.8E+02 0.0082 30.9 11.3 14 338-351 524-537 (782)
248 KOG4001 Axonemal dynein light 33.4 1.3E+02 0.0029 29.3 6.5 22 381-402 231-252 (259)
249 KOG4307 RNA binding protein RB 33.4 1E+02 0.0022 35.2 6.5 67 66-133 868-935 (944)
250 PF13863 DUF4200: Domain of un 33.4 1.6E+02 0.0034 25.2 6.6 53 339-391 44-101 (126)
251 PRK14472 F0F1 ATP synthase sub 33.0 3.9E+02 0.0084 24.5 10.3 25 336-360 65-89 (175)
252 PRK09174 F0F1 ATP synthase sub 33.0 4.5E+02 0.0097 25.2 10.3 17 321-337 100-116 (204)
253 PF10226 DUF2216: Uncharacteri 32.9 3.8E+02 0.0083 25.8 9.4 32 370-401 114-145 (195)
254 COG1730 GIM5 Predicted prefold 32.8 2.4E+02 0.0053 25.9 7.9 52 339-407 11-62 (145)
255 TIGR01645 half-pint poly-U bin 32.8 1.4E+02 0.0031 33.5 7.6 69 65-134 107-176 (612)
256 PRK06746 peptide chain release 32.7 5.3E+02 0.011 26.8 11.2 42 368-414 58-99 (326)
257 PTZ00464 SNF-7-like protein; P 32.7 4.7E+02 0.01 25.3 10.4 28 373-400 123-150 (211)
258 cd07646 I-BAR_IMD_IRSp53 Inver 32.6 5E+02 0.011 25.8 10.4 32 330-361 77-109 (232)
259 cd07605 I-BAR_IMD Inverse (I)- 32.6 3.7E+02 0.0081 26.2 9.7 13 344-356 90-102 (223)
260 PF05130 FlgN: FlgN protein; 32.4 2.7E+02 0.0059 23.4 7.9 29 371-399 84-112 (143)
261 PF14447 Prok-RING_4: Prokaryo 32.3 21 0.00046 27.6 0.8 29 185-213 21-49 (55)
262 TIGR01837 PHA_granule_1 poly(h 32.1 3.5E+02 0.0075 23.7 8.6 79 318-396 18-115 (118)
263 KOG0996 Structural maintenance 32.1 3.7E+02 0.0081 32.6 10.9 35 321-355 784-820 (1293)
264 PF02841 GBP_C: Guanylate-bind 32.1 4.7E+02 0.01 26.1 10.7 17 339-355 234-250 (297)
265 PRK14559 putative protein seri 32.0 29 0.00063 39.0 2.2 19 220-238 29-49 (645)
266 PF08274 PhnA_Zn_Ribbon: PhnA 31.9 29 0.00063 23.6 1.3 20 219-238 3-27 (30)
267 PF10422 LRS4: Monopolin compl 31.9 62 0.0013 32.3 4.1 18 337-354 10-27 (249)
268 CHL00118 atpG ATP synthase CF0 31.9 3.9E+02 0.0084 24.1 10.3 43 321-363 69-111 (156)
269 COG1579 Zn-ribbon protein, pos 31.7 3.4E+02 0.0074 26.9 9.3 14 321-334 44-57 (239)
270 PF10168 Nup88: Nuclear pore c 31.7 2.6E+02 0.0057 32.0 9.6 13 65-77 288-300 (717)
271 PF11559 ADIP: Afadin- and alp 31.6 3.1E+02 0.0066 24.5 8.4 25 367-391 97-121 (151)
272 TIGR00019 prfA peptide chain r 31.6 3.3E+02 0.0072 28.6 9.7 48 367-415 78-125 (360)
273 COG3937 Uncharacterized conser 31.5 2.4E+02 0.0053 24.7 7.2 72 320-391 22-103 (108)
274 PF08657 DASH_Spc34: DASH comp 31.5 1.7E+02 0.0037 29.3 7.3 32 320-356 178-209 (259)
275 KOG4848 Extracellular matrix-a 31.5 4.5E+02 0.0098 25.5 9.6 65 323-389 100-164 (225)
276 PRK11637 AmiB activator; Provi 31.4 2.7E+02 0.0058 29.3 9.1 27 369-395 94-121 (428)
277 KOG2962 Prohibitin-related mem 31.4 2.5E+02 0.0053 28.2 8.1 55 321-383 180-236 (322)
278 KOG2068 MOT2 transcription fac 31.3 35 0.00076 35.2 2.4 46 167-212 249-296 (327)
279 PF08746 zf-RING-like: RING-li 31.2 35 0.00077 24.7 1.8 37 170-209 1-43 (43)
280 TIGR03825 FliH_bacil flagellar 31.1 1.6E+02 0.0036 28.8 7.1 7 350-356 46-52 (255)
281 KOG0971 Microtubule-associated 31.1 1.9E+02 0.0042 34.0 8.2 65 333-397 986-1053(1243)
282 PF03978 Borrelia_REV: Borreli 31.1 4.5E+02 0.0097 24.6 10.1 38 321-358 27-64 (160)
283 PF11932 DUF3450: Protein of u 30.8 3.3E+02 0.0071 26.5 9.1 17 385-401 128-144 (251)
284 PF03310 Cauli_DNA-bind: Cauli 30.7 4E+02 0.0086 23.9 8.7 54 326-384 3-58 (121)
285 PF00430 ATP-synt_B: ATP synth 30.6 3.4E+02 0.0073 23.1 9.0 44 321-364 46-89 (132)
286 KOG0826 Predicted E3 ubiquitin 30.5 24 0.00053 36.5 1.1 42 167-211 300-343 (357)
287 PRK14475 F0F1 ATP synthase sub 30.5 2.9E+02 0.0063 25.2 8.2 54 335-392 56-109 (167)
288 KOG3990 Uncharacterized conser 30.4 2.5E+02 0.0054 28.4 8.0 41 349-391 254-294 (305)
289 PRK10930 FtsH protease regulat 30.4 4.8E+02 0.01 27.9 10.8 77 329-405 249-343 (419)
290 KOG0742 AAA+-type ATPase [Post 30.4 4.2E+02 0.0092 29.0 10.1 62 341-402 114-183 (630)
291 PRK11032 hypothetical protein; 30.3 1.7E+02 0.0036 27.3 6.5 14 342-355 4-17 (160)
292 KOG0972 Huntingtin interacting 30.3 2.3E+02 0.0049 29.3 7.8 21 371-391 335-355 (384)
293 PF10226 DUF2216: Uncharacteri 30.3 1.8E+02 0.0038 28.1 6.7 13 385-397 55-67 (195)
294 PF15463 ECM11: Extracellular 30.2 4E+02 0.0087 23.8 8.8 19 367-385 115-133 (139)
295 KOG1295 Nonsense-mediated deca 30.2 41 0.00089 35.4 2.7 65 68-132 10-77 (376)
296 TIGR03007 pepcterm_ChnLen poly 29.9 1.7E+02 0.0037 31.1 7.5 79 313-391 133-224 (498)
297 COG1382 GimC Prefoldin, chaper 29.8 2E+02 0.0043 25.7 6.6 28 370-397 83-111 (119)
298 KOG1609 Protein involved in mR 29.8 20 0.00043 35.3 0.4 47 167-213 78-133 (323)
299 PRK07353 F0F1 ATP synthase sub 29.4 3.8E+02 0.0083 23.3 9.1 29 335-363 51-79 (140)
300 KOG3859 Septins (P-loop GTPase 29.3 5.8E+02 0.013 26.6 10.5 36 320-355 320-355 (406)
301 PF09789 DUF2353: Uncharacteri 29.0 2.5E+02 0.0053 29.1 8.0 71 321-391 139-216 (319)
302 PF15175 SPATA24: Spermatogene 28.9 1.8E+02 0.0039 27.0 6.2 29 332-360 40-68 (153)
303 PRK00888 ftsB cell division pr 28.7 2.5E+02 0.0053 24.2 6.9 40 370-409 47-89 (105)
304 TIGR00020 prfB peptide chain r 28.7 6E+02 0.013 26.8 10.9 43 367-414 95-137 (364)
305 KOG1853 LIS1-interacting prote 28.7 3.6E+02 0.0078 27.4 8.7 21 371-391 133-153 (333)
306 TIGR01069 mutS2 MutS2 family p 28.5 3.3E+02 0.0071 31.4 9.8 20 338-357 540-559 (771)
307 cd00632 Prefoldin_beta Prefold 28.4 2E+02 0.0044 24.2 6.3 27 369-395 75-102 (105)
308 KOG4330 Uncharacterized conser 28.2 84 0.0018 30.0 4.1 30 317-346 156-185 (206)
309 KOG0944 Ubiquitin-specific pro 28.2 42 0.00092 37.9 2.5 35 228-266 38-72 (763)
310 PF07412 Geminin: Geminin; In 28.0 64 0.0014 31.2 3.5 24 372-395 133-156 (200)
311 KOG3313 Molecular chaperone Pr 28.0 89 0.0019 29.8 4.3 33 361-394 126-159 (187)
312 PRK14473 F0F1 ATP synthase sub 27.9 4.6E+02 0.0099 23.7 9.9 13 324-336 58-70 (164)
313 PF04728 LPP: Lipoprotein leuc 27.8 2.1E+02 0.0046 22.3 5.6 18 373-390 12-29 (56)
314 KOG4571 Activating transcripti 27.8 1.4E+02 0.003 30.5 5.9 26 368-393 259-284 (294)
315 KOG2341 TATA box binding prote 27.7 1.3E+02 0.0028 33.4 6.0 74 318-391 407-482 (563)
316 PF15397 DUF4618: Domain of un 27.7 3.2E+02 0.0069 27.5 8.4 30 367-396 77-107 (258)
317 PTZ00419 valyl-tRNA synthetase 27.6 1.9E+02 0.0041 34.2 7.9 54 339-392 934-992 (995)
318 PRK00578 prfB peptide chain re 27.6 3.7E+02 0.0081 28.3 9.2 44 366-414 94-137 (367)
319 PF01412 ArfGap: Putative GTPa 27.5 59 0.0013 28.1 2.9 54 215-272 10-63 (116)
320 PF12718 Tropomyosin_1: Tropom 27.5 4.2E+02 0.009 24.0 8.5 14 371-384 80-93 (143)
321 KOG4680 Uncharacterized conser 27.4 3.2E+02 0.007 25.2 7.6 78 14-117 49-130 (153)
322 PF09403 FadA: Adhesion protei 27.4 4.4E+02 0.0096 23.6 8.4 56 334-389 56-114 (126)
323 PF11460 DUF3007: Protein of u 27.3 83 0.0018 27.4 3.7 17 340-356 65-81 (104)
324 PF08777 RRM_3: RNA binding mo 27.3 2.3E+02 0.0049 24.2 6.4 59 66-130 2-60 (105)
325 COG1773 Rubredoxin [Energy pro 27.1 52 0.0011 25.5 2.1 34 205-238 5-44 (55)
326 TIGR03545 conserved hypothetic 27.0 1.8E+02 0.004 32.2 7.2 19 336-354 170-188 (555)
327 PF15369 KIAA1328: Uncharacter 27.0 3.6E+02 0.0077 28.1 8.7 90 330-419 22-123 (328)
328 KOG3915 Transcription regulato 26.8 2.6E+02 0.0057 30.5 8.0 16 87-102 228-243 (641)
329 KOG1916 Nuclear protein, conta 26.7 2.7E+02 0.0059 33.0 8.4 23 323-345 884-906 (1283)
330 PF10168 Nup88: Nuclear pore c 26.7 5.4E+02 0.012 29.5 10.9 9 167-175 364-372 (717)
331 PF10571 UPF0547: Uncharacteri 26.6 38 0.00083 22.1 1.2 8 205-212 2-9 (26)
332 PHA03386 P10 fibrous body prot 26.6 93 0.002 26.6 3.7 31 361-392 10-40 (94)
333 KOG4443 Putative transcription 26.6 29 0.00063 38.8 1.0 46 167-213 18-72 (694)
334 PF05010 TACC: Transforming ac 26.3 5.6E+02 0.012 24.8 9.6 26 368-393 172-197 (207)
335 PF00038 Filament: Intermediat 26.3 4.3E+02 0.0094 26.1 9.2 64 335-398 167-243 (312)
336 PF10458 Val_tRNA-synt_C: Valy 26.3 2.6E+02 0.0057 21.7 6.1 52 339-390 9-65 (66)
337 TIGR02890 spore_yteA sporulati 26.1 3.5E+02 0.0075 25.1 7.8 21 382-402 63-83 (159)
338 PF04420 CHD5: CHD5-like prote 26.1 49 0.0011 30.4 2.2 20 372-391 67-86 (161)
339 KOG2008 BTK-associated SH3-dom 26.0 4.2E+02 0.0091 27.7 8.9 31 321-355 51-81 (426)
340 PLN02678 seryl-tRNA synthetase 25.9 3E+02 0.0066 29.7 8.4 26 372-397 79-105 (448)
341 TIGR02894 DNA_bind_RsfA transc 25.8 1.6E+02 0.0034 27.7 5.4 18 373-390 113-130 (161)
342 cd07643 I-BAR_IMD_MIM Inverse 25.8 2.9E+02 0.0063 27.3 7.5 43 321-363 84-126 (231)
343 TIGR00293 prefoldin, archaeal 25.7 3.4E+02 0.0075 23.3 7.4 34 372-407 21-54 (126)
344 COG4847 Uncharacterized protei 25.3 4.5E+02 0.0097 22.8 7.6 40 347-386 63-102 (103)
345 KOG0977 Nuclear envelope prote 25.2 1.6E+02 0.0035 32.6 6.2 32 324-355 251-282 (546)
346 PRK13453 F0F1 ATP synthase sub 25.1 5.4E+02 0.012 23.6 9.8 21 322-342 66-86 (173)
347 PF02388 FemAB: FemAB family; 25.1 3.9E+02 0.0085 28.1 9.0 25 369-393 271-295 (406)
348 PRK10244 anti-RssB factor; Pro 25.1 1.3E+02 0.0027 25.6 4.2 66 333-401 20-86 (88)
349 PF05266 DUF724: Protein of un 25.0 4E+02 0.0087 25.4 8.2 12 342-353 111-122 (190)
350 PF05010 TACC: Transforming ac 25.0 6.4E+02 0.014 24.4 9.9 70 321-392 39-111 (207)
351 PF15233 SYCE1: Synaptonemal c 24.9 2.6E+02 0.0057 25.4 6.5 22 371-392 34-55 (134)
352 cd00890 Prefoldin Prefoldin is 24.8 4.3E+02 0.0093 22.4 9.1 31 366-396 89-120 (129)
353 PF13256 DUF4047: Domain of un 24.5 4.8E+02 0.01 23.4 7.9 9 326-334 42-50 (125)
354 PF02179 BAG: BAG domain; Int 24.4 3.6E+02 0.0079 21.4 8.3 49 335-384 21-76 (76)
355 PF10211 Ax_dynein_light: Axon 24.4 4.5E+02 0.0098 24.8 8.5 17 382-398 167-183 (189)
356 PRK14474 F0F1 ATP synthase sub 24.4 3.7E+02 0.0081 26.5 8.2 19 340-358 56-74 (250)
357 cd00584 Prefoldin_alpha Prefol 24.0 1.6E+02 0.0034 25.5 5.0 37 361-398 85-122 (129)
358 PF09755 DUF2046: Uncharacteri 23.8 8.3E+02 0.018 25.3 11.1 32 372-403 179-211 (310)
359 PLN03229 acetyl-coenzyme A car 23.8 1.9E+02 0.0041 33.2 6.6 53 347-399 461-526 (762)
360 PF10046 BLOC1_2: Biogenesis o 23.7 4.4E+02 0.0096 22.2 9.0 11 322-332 14-24 (99)
361 PF05911 DUF869: Plant protein 23.7 5.9E+02 0.013 29.5 10.6 66 329-394 73-158 (769)
362 KOG0288 WD40 repeat protein Ti 23.6 2.5E+02 0.0055 30.2 7.1 20 334-353 31-50 (459)
363 PRK05729 valS valyl-tRNA synth 23.6 2E+02 0.0043 33.4 7.0 54 338-391 815-873 (874)
364 COG1198 PriA Primosomal protei 23.6 50 0.0011 37.7 2.1 34 206-239 447-484 (730)
365 PF03962 Mnd1: Mnd1 family; I 23.5 4.3E+02 0.0092 25.0 8.1 22 369-390 108-129 (188)
366 PF06785 UPF0242: Uncharacteri 23.5 2.5E+02 0.0055 29.4 6.9 31 367-397 144-175 (401)
367 PRK08475 F0F1 ATP synthase sub 23.5 5.8E+02 0.013 23.4 9.1 25 338-362 71-95 (167)
368 PF10211 Ax_dynein_light: Axon 23.4 4.8E+02 0.01 24.6 8.5 16 376-391 168-183 (189)
369 PRK05431 seryl-tRNA synthetase 23.4 3.7E+02 0.008 28.6 8.5 20 369-388 78-97 (425)
370 PRK09039 hypothetical protein; 23.3 5.7E+02 0.012 26.4 9.6 15 320-334 79-93 (343)
371 PRK09173 F0F1 ATP synthase sub 23.3 4.8E+02 0.01 23.4 8.2 27 336-362 49-75 (159)
372 PRK07883 hypothetical protein; 23.1 3E+02 0.0066 30.3 8.0 22 398-420 451-472 (557)
373 PRK14472 F0F1 ATP synthase sub 23.1 5.9E+02 0.013 23.3 9.1 13 324-336 68-80 (175)
374 PF10393 Matrilin_ccoil: Trime 23.1 2.2E+02 0.0048 21.3 4.8 26 366-391 18-43 (47)
375 PF11068 YlqD: YlqD protein; 23.0 4.2E+02 0.0092 23.8 7.5 22 369-390 65-86 (131)
376 TIGR02338 gimC_beta prefoldin, 23.0 3.1E+02 0.0067 23.4 6.5 42 335-385 68-109 (110)
377 COG5082 AIR1 Arginine methyltr 23.0 1.1E+02 0.0024 29.4 4.0 37 165-209 58-97 (190)
378 PRK11788 tetratricopeptide rep 22.9 50 0.0011 33.0 1.8 26 215-240 351-378 (389)
379 PF02601 Exonuc_VII_L: Exonucl 22.8 7.7E+02 0.017 24.6 11.0 21 67-87 16-36 (319)
380 smart00502 BBC B-Box C-termina 22.8 4.3E+02 0.0094 21.7 8.6 29 326-355 43-71 (127)
381 KOG0964 Structural maintenance 22.7 2.6E+02 0.0057 33.2 7.5 63 337-400 758-829 (1200)
382 KOG0704 ADP-ribosylation facto 22.7 47 0.001 34.7 1.6 25 215-239 16-48 (386)
383 PF07445 priB_priC: Primosomal 22.7 4.7E+02 0.01 24.4 8.1 48 344-391 115-165 (173)
384 TIGR01933 hflK HflK protein. H 22.6 5.4E+02 0.012 24.9 8.9 26 381-406 223-248 (261)
385 TIGR02492 flgK_ends flagellar 22.6 7.2E+02 0.016 25.1 10.1 88 321-410 133-230 (322)
386 PRK06568 F0F1 ATP synthase sub 22.5 6.2E+02 0.013 23.4 10.5 39 322-364 52-90 (154)
387 COG5220 TFB3 Cdk activating ki 22.5 23 0.0005 35.3 -0.7 36 166-201 9-46 (314)
388 PF10796 Anti-adapt_IraP: Sigm 22.5 1.6E+02 0.0034 24.9 4.4 37 333-369 20-56 (87)
389 PF10498 IFT57: Intra-flagella 22.4 4.4E+02 0.0095 27.6 8.6 25 321-345 265-289 (359)
390 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.3 5.4E+02 0.012 22.6 9.0 29 369-397 96-124 (132)
391 PLN02931 nucleoside diphosphat 22.2 2.2E+02 0.0047 26.9 5.8 55 64-133 29-86 (177)
392 PRK13182 racA polar chromosome 22.1 4.8E+02 0.01 24.5 8.1 22 337-358 88-109 (175)
393 COG5207 UBP14 Isopeptidase T [ 22.1 20 0.00044 39.2 -1.2 38 228-265 36-74 (749)
394 PF04073 tRNA_edit: Aminoacyl- 22.1 1.5E+02 0.0033 25.1 4.5 62 74-136 2-63 (123)
395 KOG0250 DNA repair protein RAD 21.9 7.4E+02 0.016 29.8 10.9 37 320-356 659-697 (1074)
396 cd00584 Prefoldin_alpha Prefol 21.8 4E+02 0.0087 23.0 7.1 17 338-354 3-19 (129)
397 PHA02562 46 endonuclease subun 21.8 7E+02 0.015 26.7 10.4 32 367-398 382-413 (562)
398 PLN02943 aminoacyl-tRNA ligase 21.8 2.6E+02 0.0056 33.0 7.5 53 339-391 894-951 (958)
399 PF02370 M: M protein repeat; 21.7 1.5E+02 0.0033 18.7 3.1 17 374-390 4-20 (21)
400 PF10752 DUF2533: Protein of u 21.6 2.2E+02 0.0047 23.9 4.9 22 322-348 12-33 (84)
401 PF15450 DUF4631: Domain of un 21.5 3.6E+02 0.0077 29.8 7.9 57 335-391 370-432 (531)
402 PF14073 Cep57_CLD: Centrosome 21.4 5.5E+02 0.012 24.5 8.2 17 322-338 120-136 (178)
403 TIGR00414 serS seryl-tRNA synt 21.3 4.1E+02 0.0089 28.2 8.3 20 369-388 81-100 (418)
404 KOG2398 Predicted proline-seri 21.2 7.1E+02 0.015 28.1 10.4 34 322-355 57-90 (611)
405 PF05529 Bap31: B-cell recepto 21.2 4.3E+02 0.0093 24.5 7.6 22 370-391 153-174 (192)
406 PRK11546 zraP zinc resistance 21.1 6.2E+02 0.013 23.2 8.3 59 321-385 49-110 (143)
407 PHA03161 hypothetical protein; 21.0 3.4E+02 0.0073 25.2 6.5 19 371-389 89-107 (150)
408 PF05290 Baculo_IE-1: Baculovi 20.9 53 0.0011 29.9 1.3 47 166-214 79-132 (140)
409 KOG1512 PHD Zn-finger protein 20.9 44 0.00094 34.2 0.9 60 167-226 258-337 (381)
410 TIGR01280 xseB exodeoxyribonuc 20.9 4E+02 0.0087 21.1 6.2 22 370-391 35-56 (67)
411 KOG0432 Valyl-tRNA synthetase 20.8 1.7E+02 0.0037 34.4 5.5 33 361-393 962-994 (995)
412 PF01988 VIT1: VIT family; In 20.7 2.6E+02 0.0057 26.5 6.2 24 340-363 57-80 (213)
413 PF02403 Seryl_tRNA_N: Seryl-t 20.6 5E+02 0.011 21.6 7.6 27 371-397 74-101 (108)
414 PF11781 RRN7: RNA polymerase 20.4 61 0.0013 22.7 1.3 20 220-239 10-34 (36)
415 PF10272 Tmpp129: Putative tra 20.3 63 0.0014 33.8 2.0 21 193-213 315-350 (358)
416 PF09755 DUF2046: Uncharacteri 20.3 9.7E+02 0.021 24.8 12.0 35 319-354 24-58 (310)
417 PF02609 Exonuc_VII_S: Exonucl 20.3 3.7E+02 0.0081 20.0 6.3 19 371-389 34-52 (53)
418 COG3883 Uncharacterized protei 20.3 8.3E+02 0.018 24.7 9.7 18 319-336 28-45 (265)
419 PF04438 zf-HIT: HIT zinc fing 20.2 52 0.0011 22.2 0.9 22 220-242 4-25 (30)
420 COG1564 THI80 Thiamine pyropho 20.2 59 0.0013 31.6 1.6 27 386-413 77-103 (212)
421 PRK12714 flgK flagellar hook-a 20.0 4.1E+02 0.0088 29.8 8.3 89 321-411 133-228 (624)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=100.00 E-value=1.8e-108 Score=830.08 Aligned_cols=401 Identities=44% Similarity=0.794 Sum_probs=352.4
Q ss_pred CeEEEEee---cCCCCcccc-cccceeeecCcc---cccccCCCCceeeeeeEEEEccCCCCCcCCCCCCCccEEEEEec
Q 014500 1 MFVLRVHS---VDDNHPITI-EEAGFCTVSSTA---TRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAV 73 (423)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~---~~~f~sgnp~v~~~~G~vhl~r~~~~~~~~~~~~~~~~lcilaV 73 (423)
|++.++++ +++..+++. .+.-++.-.|.. ++-|+||||.|++|+|||||||.++.++.+.+.. ++|||||||
T Consensus 4 v~~e~~~~~~~~~ssr~i~~r~~d~g~~~~s~~~~~~~~~~sgnp~ve~t~GiiHLyk~n~~~s~~~~~~-~~mLcilaV 82 (493)
T KOG0804|consen 4 VIIESLVSEPLVDSSREISGRSEDSGFTSASERLPSQIKYSSGNPSVEETHGIIHLYKKNSHSSLKNASS-STMLCILAV 82 (493)
T ss_pred chhhhcccCcccccccccCCcccccccchhhhccCCcccccCCCCceeeeceeEEEEecCcccccccCCC-CcEEEEEec
Confidence 46778887 899998888 333366666655 3349999999999999999999998888766543 899999999
Q ss_pred CCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcCceEEEEEEEEEEeec
Q 014500 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHMLFMLSVEYTEL 153 (423)
Q Consensus 74 P~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e~C~v~~v~~v~~~~~ 153 (423)
|+|||++||++|++++..+|++||||| |++||||||||||++|.+|+.||.+|||++||++|||+||++||.+|+++.+
T Consensus 83 P~~mt~~Dll~F~~~~~~~I~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s 161 (493)
T KOG0804|consen 83 PAYMTSHDLLRFCASFIKQISDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTES 161 (493)
T ss_pred cccccHHHHHHHHHHHhhhhheeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEec
Confidence 999999999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccccccC--CCCCCcCCCCCCCcee
Q 014500 154 AEIASTPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQ--DERPTCSVCGTVENLW 231 (423)
Q Consensus 154 ~~~~~~~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~~--~~~~~C~~C~~~~~lW 231 (423)
.+++++|+.+++|+|||||||||||++++||++++|+|+||+.|+.+|.+++||||||+++| .+...|.+|+..++||
T Consensus 162 ~d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~Lw 241 (493)
T KOG0804|consen 162 EDGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLW 241 (493)
T ss_pred ccCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999863 2467899999999999
Q ss_pred eecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccccccccccccCCeeeecCCCCCC-CCCCCCCcCC
Q 014500 232 VCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSH-EAHCGTCECS 310 (423)
Q Consensus 232 iCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVHrl~q~k~dgklvel~~~~~~~-~~~~~~~~~~ 310 (423)
+||+||++|||||..+||++||++|+|+|+|+|+|+|||||++|+||||++|+++|||+|++...+..+ .+.|++++..
T Consensus 242 icliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~~~~~~~~~~~~ 321 (493)
T KOG0804|consen 242 ICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDSRKDDCDSLELE 321 (493)
T ss_pred EEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEeccccccccccCcceEEee
Confidence 999999999999999999999999999999999999999999999999999999999999998887553 3445554433
Q ss_pred CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 311 EDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS-KRESLIPETVEKAVASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 311 ~~~~~~~~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~-~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~ 389 (423)
... +.....+++..-....|+.+..+|||+||+|||.++.++.+ +.+..+.++.+|.+..|++++|.|++|+.+|+++
T Consensus 322 ~s~-ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 322 YSP-LLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred cch-hhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22222333333344455555558888888888888888887 7778888888899999999999999999999999
Q ss_pred HHHHhhhhccCCcEE
Q 014500 390 VADVNPLTTHFRSVI 404 (423)
Q Consensus 390 l~~ln~~L~~~~~~~ 404 (423)
++++|++|.+|+.|.
T Consensus 401 ~~E~n~~l~knq~vw 415 (493)
T KOG0804|consen 401 EREENKKLIKNQDVW 415 (493)
T ss_pred HHHHHHHHHhhHHHH
Confidence 999999999998763
No 2
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=99.97 E-value=3.3e-31 Score=228.27 Aligned_cols=104 Identities=43% Similarity=0.770 Sum_probs=94.6
Q ss_pred cCCCCCCCccEEEEEecCCCCCHHHHHHHhcc-cccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 57 YQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGS-HIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 57 ~~~~~~~~~~~lcilaVP~~ms~~d~l~F~~~-~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
++.+|.++++++|+|+||+||++.|+|.|+++ +.+.|+|+|||| +++||||||||||++|.+|++||..||||+||||
T Consensus 4 ~~~~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir-d~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 4 ESDLPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR-DGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ccCCCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEee-CCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 45677888999999999999999999877755 589999999999 5679999999999999999999999999999999
Q ss_pred CcCceEEEEEEEEEEeeccccCCCCC
Q 014500 136 EAEVCHMLFMLSVEYTELAEIASTPP 161 (423)
Q Consensus 136 e~e~C~v~~v~~v~~~~~~~~~~~~~ 161 (423)
|||+|||+||++|+++.+.+.+..++
T Consensus 83 EpE~ChvvfV~~Ve~~~~~~~~~~~~ 108 (110)
T PF07576_consen 83 EPETCHVVFVKSVEFTSSAEGASSPP 108 (110)
T ss_pred CCceeEEEEEEEEEEEcccccccCCC
Confidence 99999999999999999877776655
No 3
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.70 E-value=9.3e-18 Score=130.91 Aligned_cols=60 Identities=55% Similarity=1.242 Sum_probs=53.2
Q ss_pred cCCCCCC-CceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccccc
Q 014500 221 CSVCGTV-ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (423)
Q Consensus 221 C~~C~~~-~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVHr 280 (423)
|.+|+.. .++|+||+||++||||+.++||+.|+++++|++++++.+.+||||.||+||+.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~ 61 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD 61 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence 6788877 89999999999999999999999999999999999999999999999999964
No 4
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-13 Score=144.95 Aligned_cols=64 Identities=41% Similarity=0.854 Sum_probs=59.9
Q ss_pred CCCCCCcCCCCCCCceeeecccCcccccCCc------chhhhhhhhcCCCceeeeCCC-----ceEEEccCCccc
Q 014500 215 QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 278 (423)
Q Consensus 215 ~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy~------~~HA~~H~e~t~H~lal~l~t-----~rVwcY~cd~yV 278 (423)
++..++|..|+.++|||+||+||.+||||.+ ++||..||++|+||+++.|+| .+||||.||+.|
T Consensus 176 ~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v 250 (763)
T KOG0944|consen 176 PPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEV 250 (763)
T ss_pred CCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccc
Confidence 4668999999999999999999999999963 889999999999999999986 799999999998
No 5
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.4e-12 Score=134.04 Aligned_cols=62 Identities=44% Similarity=0.962 Sum_probs=56.8
Q ss_pred CCCCcCCCCCCCceeeecccCcccccCCc-----chhhhhhhhcCCCceeeeCCC-----ceEEEccCCccc
Q 014500 217 ERPTCSVCGTVENLWVCLICGFVGCGRYK-----EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 278 (423)
Q Consensus 217 ~~~~C~~C~~~~~lWiCL~CG~vgCgRy~-----~~HA~~H~e~t~H~lal~l~t-----~rVwcY~cd~yV 278 (423)
...+|..|+...|+|+||+||++||||-+ ++||+.||++|+||+++.+.+ .++|||.||+.+
T Consensus 172 ~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~ 243 (749)
T COG5207 172 GGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEI 243 (749)
T ss_pred CCceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCccc
Confidence 46789999999999999999999999953 789999999999999998864 799999999985
No 6
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.15 E-value=2.6e-11 Score=89.76 Aligned_cols=49 Identities=59% Similarity=1.236 Sum_probs=45.9
Q ss_pred CcCCCCCCCceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCce
Q 014500 220 TCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQ 268 (423)
Q Consensus 220 ~C~~C~~~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~r 268 (423)
+|.+|+...++|+||.|+++||+|+..+|+..|+++++|++++++.+++
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 5889998889999999999999999999999999999999999998764
No 7
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.97 E-value=4.3e-10 Score=117.69 Aligned_cols=61 Identities=30% Similarity=0.441 Sum_probs=57.9
Q ss_pred CCCcCCCCCCCceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccc
Q 014500 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278 (423)
Q Consensus 218 ~~~C~~C~~~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yV 278 (423)
.-.|.+|....|+|+||+||.++|||..++||..|+.+++|+++++++|++||||.|+.||
T Consensus 16 e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v 76 (440)
T cd02669 16 EKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEI 76 (440)
T ss_pred cccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEE
Confidence 4579999999999999999988888888999999999999999999999999999999999
No 8
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3e-09 Score=115.14 Aligned_cols=88 Identities=25% Similarity=0.577 Sum_probs=63.0
Q ss_pred CCCccchhhhhccc-------ccCcccccccccCCCCCCcCCCCCCCceeeecccCcccccC-CcchhhhhhhhcC---C
Q 014500 189 CDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGR-YKEGHAVRHWKDT---Q 257 (423)
Q Consensus 189 C~H~Fh~~Cl~kW~-------~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vgCgR-y~~~HA~~H~e~t---~ 257 (423)
|.|.-|.--+.+.. +..|..|.........-.-..=....++|.||.||+.|||| ...+||+.||... .
T Consensus 45 C~Hi~Kav~l~~lk~~iks~~~~~C~eC~e~~~~k~g~s~~~~~~~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~ 124 (877)
T KOG1873|consen 45 CQHIKKAVDLSHLKRAIKSLLWIKCSECNEEVKVKDGGSSDQFEFDNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEP 124 (877)
T ss_pred cchHHhhhcHHHHHHHHHHHHHHHHHHhhhcceeccCCCccccccccceeeecccCCeeeCCCcccchhhhhhcccCCCC
Confidence 88876655544432 35688887643211110000111234799999999999999 6789999999875 7
Q ss_pred CceeeeCCCceEEEccCCc
Q 014500 258 HWYSLDLRTQQIWDYVGDN 276 (423)
Q Consensus 258 H~lal~l~t~rVwcY~cd~ 276 (423)
|++++++.++.+|||.||.
T Consensus 125 Hclvin~~n~~~WCy~Cd~ 143 (877)
T KOG1873|consen 125 HCLVINLINWLIWCYSCDA 143 (877)
T ss_pred eeEEEEeeeeeeEEEeccc
Confidence 9999999999999999999
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.76 E-value=2e-09 Score=77.77 Aligned_cols=41 Identities=41% Similarity=1.008 Sum_probs=34.9
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCR 210 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR 210 (423)
+|+||++.++.+ ..+..++|+|.||..|+.+|. ..+||+||
T Consensus 2 ~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG-EKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT-SCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCC-CeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 699999999763 457788999999999999997 57899997
No 10
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.60 E-value=9.4e-08 Score=98.94 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
..|.+.+..||+.||+||||+||.|||+.+.+.+...-+...+..+ ....+...+++....++++++.+
T Consensus 312 ~~~~~~~~~~~s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e-~~~~e~~~l~~~~~~~e~~kk~~ 380 (493)
T KOG0804|consen 312 KDDCDSLELEYSPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYE-LLITEADSLKQESSDLEAEKKIV 380 (493)
T ss_pred ccCcceEEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhhHHHHHHHHH
Confidence 5778899999999999999999999999999988822111222212 12244455556666666665554
No 11
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.8e-08 Score=97.41 Aligned_cols=57 Identities=26% Similarity=0.556 Sum_probs=46.2
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccccCCCCCCcCCCC
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCG 225 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~~~~~~~~C~~C~ 225 (423)
-+|.||||.+.++ +++..+||+|.||+.|+++|. ...||+|+....++....+.++.
T Consensus 230 ~~CaIClEdY~~G-dklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~ 289 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSED 289 (348)
T ss_pred ceEEEeecccccC-CeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCC
Confidence 4999999999886 567889999999999999998 25699999865555555666653
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.33 E-value=2.7e-07 Score=74.14 Aligned_cols=44 Identities=32% Similarity=0.763 Sum_probs=33.5
Q ss_pred CCCCcccccccCCCC---------CcceeecCCCccchhhhhccc--ccCccccc
Q 014500 167 LPTCPICLERLDPDT---------SGILSTICDHSFQCSCTAKWT--VLSCQVCR 210 (423)
Q Consensus 167 lptCpICLE~ld~~~---------~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR 210 (423)
...|+||++.|.+.. -.+...+|+|.||..|+.+|. ..+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 445999999994321 224456899999999999998 47899998
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.25 E-value=4.8e-07 Score=88.09 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=37.5
Q ss_pred CCCCCcccccccCCCCC----cceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTS----GILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~----gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
....||||++.+.+... -.+.++|+|.||..|+.+|. ..+||+||...
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 46899999998764321 02456899999999999997 56899999854
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.24 E-value=4.6e-07 Score=65.49 Aligned_cols=36 Identities=42% Similarity=0.910 Sum_probs=27.2
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhcc-cc-----cCcccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKW-TV-----LSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW-~~-----~~CPvC 209 (423)
||||++.|.+ +++++|||+|+..|+.+| .. ..||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999988 789999999999999995 31 368876
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.9e-07 Score=87.74 Aligned_cols=45 Identities=31% Similarity=0.775 Sum_probs=38.8
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
-.|.||++.+-.. +.+..+||+|.||..|+++|. ...||+||..-
T Consensus 324 veCaICms~fiK~-d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKN-DRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhccc-ceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 6899999998653 448899999999999999998 36899999865
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.08 E-value=2.2e-06 Score=80.96 Aligned_cols=45 Identities=33% Similarity=0.711 Sum_probs=37.0
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc------------------cCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV------------------LSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~------------------~~CPvCR~~~ 213 (423)
.+..+||||++.+.+ ++.++|+|.||..|+.+|.. ..||+||...
T Consensus 16 ~~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 16 GGDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 456899999998876 46679999999999999952 3699999754
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.2e-06 Score=82.86 Aligned_cols=49 Identities=33% Similarity=0.685 Sum_probs=39.9
Q ss_pred CCCCC-CCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccccc
Q 014500 162 AGFTE-LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ 214 (423)
Q Consensus 162 ~~l~E-lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~~ 214 (423)
+...+ .+.|.+|||.... +..+||||.||.+|+..|. ...||+||...+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~----pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSN----PSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred ccCCCCCCceEEEecCCCC----CCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 33444 5899999999865 4578999999999999997 357999998663
No 18
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.93 E-value=3.2e-06 Score=59.61 Aligned_cols=37 Identities=43% Similarity=0.975 Sum_probs=30.0
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvC 209 (423)
||||++.+.+. ++.++|||.|+..|+.+|. ...||+|
T Consensus 1 C~iC~~~~~~~---~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP---VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE---EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc---CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998872 4678999999999999996 5678887
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.93 E-value=4e-06 Score=58.51 Aligned_cols=40 Identities=40% Similarity=0.947 Sum_probs=32.2
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 211 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~ 211 (423)
+|+||++.+... ....+|+|.||..|+..|. ...||+||.
T Consensus 1 ~C~iC~~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhCc---eEecCCCChhcHHHHHHHHHhCcCCCCCCCC
Confidence 599999998432 4455699999999999996 347999986
No 20
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.89 E-value=6.4e-06 Score=61.03 Aligned_cols=43 Identities=30% Similarity=0.670 Sum_probs=35.5
Q ss_pred CCCCCcccccccCCCCCcceeecCCCc-cchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
|...|+||++.... ++.++|+|. |+..|..+|. ...||+||..
T Consensus 1 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 46 (50)
T PF13920_consen 1 EDEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQP 46 (50)
T ss_dssp -HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB
T ss_pred CcCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChh
Confidence 35689999999765 678899999 9999999984 6789999974
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.84 E-value=9.6e-06 Score=58.79 Aligned_cols=42 Identities=31% Similarity=0.695 Sum_probs=35.5
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
.|++|.+++.+. ..+..+.|+|.|+..|+.++. ...||+||.
T Consensus 1 ~C~~C~~~~~~~-~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE-RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC-CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999432 347788999999999999998 778999984
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=97.82 E-value=7.4e-06 Score=78.73 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=36.4
Q ss_pred CCCCCCcccccccCCC------CCcceeecCCCccchhhhhccccc--------Ccccccccc
Q 014500 165 TELPTCPICLERLDPD------TSGILSTICDHSFQCSCTAKWTVL--------SCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~------~~gi~t~~C~H~Fh~~Cl~kW~~~--------~CPvCR~~~ 213 (423)
.+..+|+||+|..-+- .-| +..+|+|.||..|+.+|... +||+||...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFG-IL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFG-LLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCcccccccccccccccc-ccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3468999999986321 123 35689999999999999853 399999864
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.73 E-value=1.2e-05 Score=56.76 Aligned_cols=37 Identities=41% Similarity=1.066 Sum_probs=30.8
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhccc----ccCcccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----~~~CPvC 209 (423)
||||++.+... ...++|+|.|+..|+.+|. ...||+|
T Consensus 1 C~iC~~~~~~~---~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP---VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE---EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC---CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999873 3488999999999999975 3568876
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.5e-05 Score=76.95 Aligned_cols=44 Identities=30% Similarity=0.683 Sum_probs=37.4
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~~ 213 (423)
..-.|-||||.-.+ ++.+.|+|-||..|+-+|.+ ..||||+...
T Consensus 46 ~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 46 GFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 46689999999876 56778999999999999983 4689999754
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.68 E-value=2.4e-05 Score=52.58 Aligned_cols=36 Identities=44% Similarity=1.045 Sum_probs=29.8
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvC 209 (423)
|+||++.... +..++|+|.||..|+..|. ...||+|
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999998443 6778999999999999995 3568887
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=2.2e-05 Score=81.68 Aligned_cols=47 Identities=26% Similarity=0.534 Sum_probs=39.0
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+.....|+||++.+.. ++.++|+|.||..|+..|. ...||+||...
T Consensus 22 ~Le~~l~C~IC~d~~~~----PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDV----PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred ccccccCCCcCchhhhC----ccCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 34567899999999976 4568999999999999986 35799999854
No 27
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.3e-05 Score=72.99 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=37.4
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
.+...|||||+.+.+-+ ++.+.|||.||..|+..-. ...||+|++
T Consensus 129 ~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCccc
Confidence 44679999999998742 5779999999999998754 568999995
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.6e-05 Score=72.21 Aligned_cols=44 Identities=41% Similarity=0.760 Sum_probs=38.2
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc--cCccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV--LSCQVCR 210 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~--~~CPvCR 210 (423)
.+.+..+||||++.+... ..++|+|+|+..|+..|.. ..||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 456789999999999983 6789999999999999654 6899999
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.42 E-value=8.2e-05 Score=61.80 Aligned_cols=42 Identities=31% Similarity=0.679 Sum_probs=29.8
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCccccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFC 212 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~ 212 (423)
+||.|...-|+ -.++.-.|+|.||..|+.+|.+ ..||.||..
T Consensus 34 ~Cp~Ck~Pgd~--Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 34 CCPDCKFPGDD--CPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCCccCCCCC--CceeeccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 44555444333 1245567999999999999973 579999975
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.39 E-value=9.4e-05 Score=56.47 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=35.8
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..||||.+.|.+ ++.++|||+|+..|+.+|. +..||+|+...
T Consensus 2 ~~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKD----PVILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCC----CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 469999999987 5678999999999999985 56899998643
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.37 E-value=5.9e-05 Score=55.00 Aligned_cols=32 Identities=31% Similarity=0.717 Sum_probs=20.4
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~ 202 (423)
||||.| +..+..-+..++|||+|+.+|+.+|.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~ 32 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLS 32 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHH
Confidence 999999 75544556788999999999999976
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.28 E-value=0.0001 Score=58.19 Aligned_cols=45 Identities=31% Similarity=0.613 Sum_probs=26.8
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~ 212 (423)
.++..|++|.+.|+++ +.+..|.|.|+..|+..-.++.||+|+..
T Consensus 5 e~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~~CPvC~~P 49 (65)
T PF14835_consen 5 EELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGSECPVCHTP 49 (65)
T ss_dssp HHTTS-SSS-S--SS----B---SSS--B-TTTGGGGTTTB-SSS--B
T ss_pred HHhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCCCCCCcCCh
Confidence 4678999999999984 35689999999999998777789999874
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00015 Score=76.84 Aligned_cols=43 Identities=37% Similarity=0.765 Sum_probs=34.9
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhc-cc------ccCcccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT------VLSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k-W~------~~~CPvCR~~~ 213 (423)
...|||||+.-.. +..+.|||.||+.|+-+ |. ...||.||-..
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 7899999998765 34556999999999988 65 24799999764
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00014 Score=78.64 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=38.5
Q ss_pred CCCCCcccccccCCCC-CcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDT-SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~-~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
....|+||+|.|-... ..+..++|+|.||..|+.+|. ..+||.||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 3789999999986521 114578999999999999997 6899999983
No 35
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.06 E-value=0.0031 Score=48.49 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=54.6
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|.|=++|..+|..|+..|+..+ ..|..++++++..-..+-.+.++|.+.+.|.+.....+|..|..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 5688999999999999999888 46999999996432346689999999999999999999887753
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00028 Score=72.34 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=37.3
Q ss_pred CCCCCcccccccCCCC---------CcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDT---------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~---------~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
..-+|.||.|.|-.+. -.+-.+||||.||-.|+..|. +.+||.||..
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 4679999999853321 124568999999999999997 6789999986
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.83 E-value=0.00071 Score=68.33 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=33.0
Q ss_pred CCCCcccccc--cCCCCCcceeecCCCccchhhhhc-cc--ccCcccccccc
Q 014500 167 LPTCPICLER--LDPDTSGILSTICDHSFQCSCTAK-WT--VLSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~--ld~~~~gi~t~~C~H~Fh~~Cl~k-W~--~~~CPvCR~~~ 213 (423)
...||+|... +.++.. ....+|+|+||.+|+.. |. ...||+|+...
T Consensus 3 ~~~CP~Ck~~~y~np~~k-l~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~l 53 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLK-LMVNVCGHTLCESCVDLLFVRGSGSCPECDTPL 53 (309)
T ss_pred CCCCCcCCCCCccCcccc-cccCCCCCcccHHHHHHHhcCCCCCCCCCCCcc
Confidence 4689999995 333221 22238999999999999 75 34799998754
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00071 Score=66.60 Aligned_cols=44 Identities=34% Similarity=0.582 Sum_probs=37.0
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhc-cc---ccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k-W~---~~~CPvCR~~~ 213 (423)
..-.|++|+|.... +..++|+|.||..|+.. |. ...||+||.-.
T Consensus 214 ~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 35689999999876 67889999999999999 97 24599999754
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.76 E-value=0.00045 Score=68.86 Aligned_cols=47 Identities=30% Similarity=0.570 Sum_probs=39.9
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
++.....|.||-+++.. ++.++|+|.||.-|+.... +..||+||...
T Consensus 21 ~LDs~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 21 GLDSMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred cchhHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 44556799999999986 6788999999999999976 56899999864
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.66 E-value=0.011 Score=44.59 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=55.7
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|.|-.+|..+|..++..+++. ...|..+.+.++.....+-.+.++|.+.++|+.....+||..|+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 568899999999999999987 456688899885333456688999999999999999999998864
No 41
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.58 E-value=0.0013 Score=54.06 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=34.2
Q ss_pred CCCcccccccCCCCCcce-eecCCCccchhhhhcccc--cCcccccccc
Q 014500 168 PTCPICLERLDPDTSGIL-STICDHSFQCSCTAKWTV--LSCQVCRFCH 213 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~-t~~C~H~Fh~~Cl~kW~~--~~CPvCR~~~ 213 (423)
-+||-|.-.++++..-++ --.|+|.||..|+.+|.+ ..||++|...
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 467777776655433333 347999999999999985 5799999753
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.57 E-value=0.0012 Score=49.38 Aligned_cols=40 Identities=25% Similarity=0.749 Sum_probs=30.3
Q ss_pred CCcccccccCCCCCcceeecCC-----Cccchhhhhccc----ccCccccc
Q 014500 169 TCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWT----VLSCQVCR 210 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~-----H~Fh~~Cl~kW~----~~~CPvCR 210 (423)
.|.||++..+ ...++..||. |.+|..|+.+|. ..+||+|+
T Consensus 1 ~CrIC~~~~~--~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD--EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC--CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998222 2446778995 889999999997 34799884
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.00074 Score=71.36 Aligned_cols=48 Identities=31% Similarity=0.724 Sum_probs=36.9
Q ss_pred CCCCCCcccccccCCCC-------------CcceeecCCCccchhhhhcccc---cCccccccc
Q 014500 165 TELPTCPICLERLDPDT-------------SGILSTICDHSFQCSCTAKWTV---LSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~-------------~gi~t~~C~H~Fh~~Cl~kW~~---~~CPvCR~~ 212 (423)
...-.|+||....+--. .....+||+|.||..|+.+|.+ ..||+||..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~p 632 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCP 632 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCC
Confidence 34568999999876421 1244579999999999999986 479999963
No 44
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.40 E-value=0.00066 Score=68.94 Aligned_cols=47 Identities=28% Similarity=0.614 Sum_probs=40.5
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+..+..|-||.|-|.. ++.+||+|+||.-|+.++. ...||.|+...
T Consensus 19 ~lD~lLRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred hhHHHHHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 44568899999999987 5677899999999999987 46899999875
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.38 E-value=0.025 Score=41.81 Aligned_cols=67 Identities=18% Similarity=0.369 Sum_probs=56.6
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
|.|-++|..++..++.++++.+ ..|..+.+.+......+-.+.++|.+.+.|.......++..|+..
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5688999999999999999876 678888888854323366899999999999999999999988743
No 46
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.002 Score=63.70 Aligned_cols=48 Identities=21% Similarity=0.581 Sum_probs=39.2
Q ss_pred CCCCCCcccccccCCCC--C----cceeecCCCccchhhhhccc----ccCccccccc
Q 014500 165 TELPTCPICLERLDPDT--S----GILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~--~----gi~t~~C~H~Fh~~Cl~kW~----~~~CPvCR~~ 212 (423)
.+..-|.||-.+++.++ + .+-++.|||+||..|+.-|- ..+||.|+.-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 46778999999998764 2 34578999999999999995 4689999864
No 47
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=95.93 E-value=0.0037 Score=50.07 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 211 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~ 211 (423)
...|||+.+.|.+ ++.+++||+|...++.+|. +..||.|+.
T Consensus 4 ~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~ 47 (73)
T PF04564_consen 4 EFLCPITGELMRD----PVILPSGHTYERSAIERWLEQNGGTDPFTRQ 47 (73)
T ss_dssp GGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-S
T ss_pred ccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCC
Confidence 4579999999998 6788999999999999997 467999975
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=95.92 E-value=0.045 Score=40.19 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=54.1
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|.|-++|..++..|+.+++..+- .|..+++.++.+ .++-.+.+.|.+...|+.....+||..|+.
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g-~v~~~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFG-PIESVKIPKDTG-KSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcC-CEEEEEEecCCC-CCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 67889999999999999997554 577888888653 345578999999999999999999988864
No 49
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0029 Score=65.29 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=30.5
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc----c-cCccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----V-LSCQVCR 210 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----~-~~CPvCR 210 (423)
..|.||.+..+.+..--.+..|||.||..|+.+|. + ..||.||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 46999966555433222233599999999999996 2 3688887
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.75 E-value=0.0026 Score=70.33 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=37.6
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
-.+-.||+||..+.+... .-..+|.|-||..|+..|. ..+||+||..+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 345689999998765321 2356899999999999997 46899999865
No 51
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.67 E-value=0.0038 Score=49.88 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=19.5
Q ss_pred CCCcccccccCCCCCc--ce--eecCCCccchhhhhcccc-------------cCcccccc
Q 014500 168 PTCPICLERLDPDTSG--IL--STICDHSFQCSCTAKWTV-------------LSCQVCRF 211 (423)
Q Consensus 168 ptCpICLE~ld~~~~g--i~--t~~C~H~Fh~~Cl~kW~~-------------~~CPvCR~ 211 (423)
..|+||.+.+.++... ++ ...|+..||..||.+|.. ..||.|+.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 5799999976522111 11 247889999999999951 35888875
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0029 Score=69.96 Aligned_cols=48 Identities=25% Similarity=0.545 Sum_probs=40.1
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccccC
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQ 215 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~~~ 215 (423)
..+..+||+|-.|..+ .+.+.|+|.||..|+.+-- +..||-|..++++
T Consensus 640 yK~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHhceeCCCccCchhh----HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3578899999999987 4567999999999998843 6789999988743
No 53
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.0041 Score=50.79 Aligned_cols=28 Identities=32% Similarity=0.745 Sum_probs=23.3
Q ss_pred eecCCCccchhhhhcccc-----cCcccccccc
Q 014500 186 STICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (423)
Q Consensus 186 t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~~ 213 (423)
--.|.|.||..|+.+|.+ ..||+||...
T Consensus 48 ~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 48 WGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 347999999999999983 5699999753
No 54
>smart00360 RRM RNA recognition motif.
Probab=95.01 E-value=0.1 Score=38.02 Aligned_cols=62 Identities=15% Similarity=0.320 Sum_probs=50.1
Q ss_pred ecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 72 AVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 72 aVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
++|..++..|+.+++..+ ..|..+++.++.. ..++-.++++|.+.+.|+.....+|+..|+.
T Consensus 3 ~l~~~~~~~~l~~~f~~~-g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 3 NLPPDVTEEELRELFSKF-GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCcccCHHHHHHHHHhh-CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 579999999999999754 3678888888532 2335689999999999999999999888864
No 55
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.89 E-value=0.0052 Score=69.30 Aligned_cols=47 Identities=32% Similarity=0.641 Sum_probs=34.6
Q ss_pred CCCCCcccccccCC-CCCcc--eeecCCCccchhhhhccc----ccCccccccc
Q 014500 166 ELPTCPICLERLDP-DTSGI--LSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~-~~~gi--~t~~C~H~Fh~~Cl~kW~----~~~CPvCR~~ 212 (423)
....|+||-.-++. +.+-+ .-..|.|.||..|+-||- .+.||+||..
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 35689999887762 22111 134699999999999996 5789999964
No 56
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.015 Score=59.90 Aligned_cols=47 Identities=36% Similarity=0.819 Sum_probs=37.7
Q ss_pred CCCCCCcccccccCCCC-----CcceeecCCCccchhhhhccc---------ccCccccccc
Q 014500 165 TELPTCPICLERLDPDT-----SGILSTICDHSFQCSCTAKWT---------VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~-----~gi~t~~C~H~Fh~~Cl~kW~---------~~~CPvCR~~ 212 (423)
...-+|-||+|...+.. -|| ...|+|.|+..|+.+|. ...||.||..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgi-lpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGI-LPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhccc-CCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 55789999999876644 333 35799999999999997 3679999974
No 57
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.41 E-value=0.3 Score=41.70 Aligned_cols=79 Identities=16% Similarity=0.410 Sum_probs=58.7
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC--CCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCC-cCceEE
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAE-AEVCHM 142 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~--~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle-~e~C~v 142 (423)
++|=|=.||+.+|..+|++.+.+....-=.+--++-| ..-|.--+-|-|.+...|..|+..|+|++.+... .-+|.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5677889999999999999997653332333333322 1235667899999999999999999999998664 347877
Q ss_pred EE
Q 014500 143 LF 144 (423)
Q Consensus 143 ~~ 144 (423)
.|
T Consensus 82 ~y 83 (97)
T PF04059_consen 82 SY 83 (97)
T ss_pred eh
Confidence 65
No 58
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.0044 Score=63.35 Aligned_cols=47 Identities=32% Similarity=0.548 Sum_probs=37.7
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcc---cccCccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW---TVLSCQVCRFC 212 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW---~~~~CPvCR~~ 212 (423)
.+.-...|||||+.+... ..+..|.|.||.+|+.+- .+..||-||+.
T Consensus 39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 345567999999999874 557789999999999552 26799999974
No 59
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.029 Score=56.52 Aligned_cols=45 Identities=29% Similarity=0.519 Sum_probs=37.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc--cccc-Ccccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK--WTVL-SCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k--W~~~-~CPvCR~~~ 213 (423)
+-.+.|+||+-...- ++.+.|+|.|+.-|+.- |.+. .|++||...
T Consensus 5 ~~~~eC~IC~nt~n~----Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pi 52 (324)
T KOG0824|consen 5 TKKKECLICYNTGNC----PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPI 52 (324)
T ss_pred ccCCcceeeeccCCc----CccccccchhhhhhhcchhhcCCCCCceecCCC
Confidence 457899999998875 57889999999999976 8764 599999853
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.88 E-value=0.034 Score=58.15 Aligned_cols=47 Identities=32% Similarity=0.647 Sum_probs=39.4
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc--cCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV--LSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~--~~CPvCR~~~ 213 (423)
+.+...||+|...+.+. ..++.|+|.|+..|+.+|.. ..||+|+..-
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCccccccc
Confidence 67889999999999874 23369999999999999984 5899998753
No 61
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.025 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.780 Sum_probs=21.9
Q ss_pred ecCCCccchhhhhccc--ccCcccccc
Q 014500 187 TICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 187 ~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
-.|+|.||-.|+++|. ...||+|..
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 4799999999999998 468999975
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.10 E-value=0.043 Score=42.32 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=27.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc----ccCccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQV 208 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----~~~CPv 208 (423)
.-...|||.+..|.+. +....|+|.|....+.+|. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4467999999999874 4567999999999999987 346777
No 63
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.046 Score=57.05 Aligned_cols=46 Identities=35% Similarity=0.783 Sum_probs=36.4
Q ss_pred CCCCcccccccCCC-CCcceeecCCCccchhhhhcccc----cCccccccc
Q 014500 167 LPTCPICLERLDPD-TSGILSTICDHSFQCSCTAKWTV----LSCQVCRFC 212 (423)
Q Consensus 167 lptCpICLE~ld~~-~~gi~t~~C~H~Fh~~Cl~kW~~----~~CPvCR~~ 212 (423)
-.+|||||+.+.-. ..-++.+.|+|.|-.+|+.+|.. ..||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 46899999987532 23467889999999999999983 569999753
No 64
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=92.55 E-value=1.1 Score=40.44 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.++.|.|=.+|..+|-.||..++..+ -.|..++|+++..+ .++-...+.|.+.++|+.-...+||..++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF-GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46779999999999999999999876 37899999985422 246678999999999999999999987763
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.25 E-value=0.042 Score=49.41 Aligned_cols=35 Identities=26% Similarity=0.753 Sum_probs=30.1
Q ss_pred CCCCcccccccCCCCCcceeecCC------Cccchhhhhccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICD------HSFQCSCTAKWT 202 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~------H~Fh~~Cl~kW~ 202 (423)
...|.||+++++. ..|++.++|+ |.||.+|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4579999999998 5789988886 669999999994
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.85 E-value=0.099 Score=43.56 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=28.2
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhh
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~ 199 (423)
.+...|++|-.++..+ .....||+|.||..|..
T Consensus 76 ~~~~~C~vC~k~l~~~--~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS--VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc--eEEEeCCCeEEeccccc
Confidence 5577899999999874 47788999999999975
No 67
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.04 E-value=0.067 Score=55.66 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=38.3
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhcc----cccCccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW----TVLSCQVCRFC 212 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW----~~~~CPvCR~~ 212 (423)
...|-.|-|++..-.+..-.+||.|.||..|+... ...+||-||..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 56899999998766566778999999999999854 36789999954
No 68
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=88.38 E-value=0.18 Score=52.73 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=33.9
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc----ccCccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----~~~CPvCR~~ 212 (423)
.-|-||.|.=.+ +-.-||||..|..|+..|. ...||.||+.
T Consensus 370 eLCKICaendKd----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcE 414 (563)
T KOG1785|consen 370 ELCKICAENDKD----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCE 414 (563)
T ss_pred HHHHHhhccCCC----cccccccchHHHHHHHhhcccCCCCCCCceeeE
Confidence 369999987554 4566999999999999997 3579999986
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.33 E-value=1.6 Score=42.01 Aligned_cols=88 Identities=16% Similarity=0.252 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNPLTTH 399 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~ 399 (423)
...++..+..|...+ +.+|++.+.=+.....+++.+.+. ++.....+..+.++|++++.+.++|...|+.-|..+.+
T Consensus 91 ~~~rlp~le~el~~l-~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 91 LRTRVPDLENQVKTL-TDKLNNIDNTWNQRTAEMQQKVAQ--SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777766 566666665555554444443221 11111224556666677777777777776666666665
Q ss_pred CCcEEEEEecc
Q 014500 400 FRSVILFFFGG 410 (423)
Q Consensus 400 ~~~~~~~~~~~ 410 (423)
....=.|+.||
T Consensus 168 ~~~~~wf~~Gg 178 (206)
T PRK10884 168 TIIMQWFMYGG 178 (206)
T ss_pred HHHHHHHHHch
Confidence 55444555554
No 70
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.26 Score=48.08 Aligned_cols=46 Identities=22% Similarity=0.516 Sum_probs=37.7
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc----------ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----------VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----------~~~CPvCR~~ 212 (423)
.-.|.|..|-..+.... .+.+.|-|.||..|+..|. ...||.|...
T Consensus 48 DY~pNC~LC~t~La~gd--t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD--TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred CCCCCCceeCCccccCc--ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 45799999999998753 5678999999999999996 3578888754
No 71
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.64 E-value=0.16 Score=51.26 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=29.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 201 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW 201 (423)
.....|.|||--|.++ ..+..++|.|-||..|+.++
T Consensus 113 ~p~gqCvICLygfa~~-~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASS-PAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCCCceEEEEEeecCC-CceeeehhHHHHHHHHHHHH
Confidence 4456899999999875 34778899999999999664
No 72
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.61 E-value=0.49 Score=47.36 Aligned_cols=45 Identities=27% Similarity=0.621 Sum_probs=33.2
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc---cc-ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT-VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k---W~-~~~CPvCR~~ 212 (423)
+...+||+|-++=.-. -...+|+|.||..|+.+ |. .-+||.|-..
T Consensus 237 t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred cCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 5578999999974331 23446999999999987 55 3579998764
No 73
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=0.25 Score=51.94 Aligned_cols=45 Identities=29% Similarity=0.511 Sum_probs=36.6
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.-.-.|-||...+.. +++++|+|+|+..|+.+-. ...||.||...
T Consensus 82 ~sef~c~vc~~~l~~----pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP----PVVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred cchhhhhhhHhhcCC----CccccccccccHHHHHHHhccCCCCccccccc
Confidence 446689999998887 5677999999999988844 46799999753
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=86.71 E-value=0.4 Score=36.00 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=19.5
Q ss_pred CcccccccCCCCCcceeecCCCccchhhhhccc---ccCccccccc
Q 014500 170 CPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 212 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~ 212 (423)
||+|.+.+|........=+|+...+..|-.+-. +..||.||..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 899999997754444444566777777754432 5789999964
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.64 E-value=6.9 Score=38.50 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=27.8
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhcccccCccccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~ 212 (423)
-|-.|.-+-+. .+.-.+.|.|.||..|...-....||.|+..
T Consensus 5 hCn~C~~~~~~--~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ 46 (233)
T KOG4739|consen 5 HCNKCFRFPSQ--DPFFLTACRHVFCEPCLKASSPDVCPLCKKS 46 (233)
T ss_pred EeccccccCCC--CceeeeechhhhhhhhcccCCccccccccce
Confidence 36666665553 3456778999999888755444467777653
No 76
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=85.79 E-value=0.25 Score=47.34 Aligned_cols=28 Identities=32% Similarity=0.719 Sum_probs=24.1
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.|.||-+.+.. ++.+.|+|.||..|..+
T Consensus 198 ~C~iCKkdy~s----pvvt~CGH~FC~~Cai~ 225 (259)
T COG5152 198 LCGICKKDYES----PVVTECGHSFCSLCAIR 225 (259)
T ss_pred eehhchhhccc----hhhhhcchhHHHHHHHH
Confidence 89999999987 56779999999888654
No 77
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.50 E-value=0.45 Score=47.76 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=36.7
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
..||+|.|.+-.+...+..++|+|.-|..|...-. +.+||.|-.
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999987776667789999999988887743 578999988
No 78
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=85.35 E-value=4.8 Score=41.57 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+....+.|.|-.+|..+|-.||..++..+- .|..++|+++..+ .++=...++|.+.++|+.-...+||..+..
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G-~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIG-PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 334578899999999999999999998664 4899999985321 134468899999999999999999988863
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.33 E-value=0.41 Score=54.11 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=36.2
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc---------ccCccccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---------VLSCQVCRFCHQ 214 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---------~~~CPvCR~~~~ 214 (423)
..-.|.||.|+++.+..--.-..|=|.||..||.+|. ...||.|++.+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 4568999999998753111122467999999999996 257999997653
No 80
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.41 E-value=0.49 Score=43.83 Aligned_cols=37 Identities=32% Similarity=0.753 Sum_probs=24.6
Q ss_pred CCCCCcccccccCCC--------CCcceeecCCCcc-chhhhhccc
Q 014500 166 ELPTCPICLERLDPD--------TSGILSTICDHSF-QCSCTAKWT 202 (423)
Q Consensus 166 ElptCpICLE~ld~~--------~~gi~t~~C~H~F-h~~Cl~kW~ 202 (423)
|..+||||+|.=-.. ..|.....|+-++ |..|+++..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 467999999963331 2344455677665 888998764
No 81
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=84.27 E-value=16 Score=32.81 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPET 364 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~ 364 (423)
.++.+.+..+|...|..--..-....++.+++++++.++.+.++
T Consensus 54 ~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A 97 (141)
T PRK08476 54 SSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAK 97 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666555555556666666666555555444
No 82
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=84.17 E-value=6.4 Score=39.35 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+..|.|=.+|..++-.+|..+++++ -.|..++|+++.. -..+-...+.|.+.++|..=...+||..|+.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~f-G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPF-GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4469999999999999999998866 3688899998541 1245578999999999999999999999975
No 83
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=84.02 E-value=9.2 Score=40.87 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccc-ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcCceEE
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHM 142 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~-~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e~C~v 142 (423)
.+.+|.|-.+|..+|-.+|..+++++-. .|..+++....+ ..+-+.+++|.+.+.|.+-....||..+..-. +..
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~---~~~ 468 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN-ERSKMGLLEWESVEDAVEALIALNHHQLNEPN---GSA 468 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCC---CCc
Confidence 4678999999999999999999988755 688898876443 24679999999999999999999999886332 333
Q ss_pred EEEEEEEEee
Q 014500 143 LFMLSVEYTE 152 (423)
Q Consensus 143 ~~v~~v~~~~ 152 (423)
-|...|.|..
T Consensus 469 ~~~lkv~fs~ 478 (481)
T TIGR01649 469 PYHLKVSFST 478 (481)
T ss_pred cceEEEEecc
Confidence 3444555543
No 84
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=83.15 E-value=7.1 Score=40.76 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..++-.||..|+..+- .|..++++++.. ..++-...++|.+.++|..... .||+.|..
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g 157 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG 157 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 4467899999999999999999998765 899999998432 1346689999999999999985 78877753
No 85
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.00 E-value=11 Score=41.21 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAK 354 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~ 354 (423)
+.+.+...|..-|..||+.|..=++..+.+..
T Consensus 319 ~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l 350 (582)
T PF09731_consen 319 EREELEEKYEEELRQELKRQEEAHEEHLKNEL 350 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666655543
No 86
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=82.77 E-value=0.25 Score=50.40 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=37.1
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
+....+|++|---|-+. ...+-|-|+||.+|+-+.. ...||.|...
T Consensus 12 ~n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ 59 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIV 59 (331)
T ss_pred cccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCcccee
Confidence 45678999999988764 3356899999999999854 6789999875
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=81.88 E-value=0.43 Score=48.53 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=44.1
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccccccCCCCCCcCCCCCCCceeeecccCcccccCC
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 244 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy 244 (423)
--|--|--.+.- -| ..++|.|.||..|...-.+..||.|---.+ +=..| ..+.+++|- +..||-|.
T Consensus 91 HfCd~Cd~PI~I--YG-RmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq-----rIeq~-~~g~iFmC~--~~~GC~RT 156 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YG-RMIPCKHVFCLECARSDSDKICPLCDDRVQ-----RIEQI-MMGGIFMCA--APHGCLRT 156 (389)
T ss_pred EeecccCCccee--ee-cccccchhhhhhhhhcCccccCcCcccHHH-----HHHHh-cccceEEee--cchhHHHH
Confidence 345555444332 22 267999999999987777889999964321 11233 457899998 67889874
No 88
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=81.31 E-value=6 Score=41.27 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=58.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.||..++..+- .|..++++++... .++-+..+.|.+.+.|..-...+||..+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFG-DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 57899999999999999999987653 5888999986533 456789999999999999999999977753
No 89
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=81.13 E-value=0.81 Score=33.81 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=24.2
Q ss_pred CcccccccCCCCCcceeecCCC-----ccchhhhhccc----ccCcccc
Q 014500 170 CPICLERLDPDTSGILSTICDH-----SFQCSCTAKWT----VLSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H-----~Fh~~Cl~kW~----~~~CPvC 209 (423)
|-||++.-+++. .+..||.= --|..|+.+|. ...|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678999877643 56677742 45999999997 3457766
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.76 E-value=20 Score=35.61 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL------IPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~------i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
....+..|..+|..++..-.+.=-.+|+.++.++.....+. ..++ .+.+..+++.|+.+++++...+..|.
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E-~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEE-LKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhH-HHHHHhhhhHhhhhhhccccchhhhh
Confidence 45667889999999999988889999999999988654322 1122 12344555555555555555555554
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=80.73 E-value=3.9 Score=30.03 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=33.5
Q ss_pred ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 92 HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 92 ~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.|..+++.++. +..+.++|.+.++|+.-...+||..|+.
T Consensus 10 ~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g 48 (56)
T PF13893_consen 10 EVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNG 48 (56)
T ss_dssp -EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred cEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 78999998854 3589999999999999999999999964
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.66 E-value=0.83 Score=51.82 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=33.8
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~ 211 (423)
....|..|--.||-+ .+-..|+|+||..|+.. ....||-|+.
T Consensus 839 q~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e~-~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP---FVHFLCGHSYHQHCLED-KEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccc---eeeeecccHHHHHhhcc-CcccCCccch
Confidence 346999999999875 56789999999999872 2356999976
No 93
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=2 Score=44.35 Aligned_cols=42 Identities=24% Similarity=0.531 Sum_probs=33.5
Q ss_pred CCCCcccccccCCCCCcceeecCCCc-cchhhhhccc--ccCccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
-..|-||+....+ .+.+||.|. -|..|..... ...||+||..
T Consensus 290 gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqp 334 (349)
T KOG4265|consen 290 GKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQP 334 (349)
T ss_pred CCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhcCCCccccc
Confidence 5689999999887 578899997 4777876644 5679999974
No 94
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=77.75 E-value=11 Score=37.76 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=57.9
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+.|.|=.+|..+|-.||..++..+- .|.+++|+++... .++--.-++|.+.++|+.-....||+.+..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g 72 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIG-EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN 72 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccC-CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC
Confidence 46799999999999999999998754 8999999985421 244568889999999999999999988864
No 95
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=76.84 E-value=9.8 Score=41.12 Aligned_cols=69 Identities=6% Similarity=0.133 Sum_probs=59.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|=.+|..+|-.+|..++..+- .|..++|+++..-.++-...+.|.+.++|.+-....||+.|+.
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G-~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECG-EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcC-CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 45689999999999999999998663 6889999997543456689999999999999999999998874
No 96
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=76.84 E-value=1.7 Score=40.40 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=31.8
Q ss_pred CCCCCCCcccccccCCCCCcceeecCC--Ccc---chhhhhcccc----cCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICD--HSF---QCSCTAKWTV----LSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~--H~F---h~~Cl~kW~~----~~CPvCR~~~ 213 (423)
....+.|-||.+.-++ ...||. .+. |.+|+.+|.+ .+|+.|++..
T Consensus 5 s~~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3568899999887543 224664 433 9999999973 5688888753
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=76.06 E-value=4.3 Score=41.30 Aligned_cols=108 Identities=24% Similarity=0.412 Sum_probs=64.1
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeecC--CCccchhhhhcccccCcccccccccC-----------CCCCCcC-----
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAKWTVLSCQVCRFCHQQ-----------DERPTCS----- 222 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~C--~H~Fh~~Cl~kW~~~~CPvCR~~~~~-----------~~~~~C~----- 222 (423)
.....++..||||.+.+... ...| ||.-+.+|-.+- ...||.||..-.. .....|.
T Consensus 42 ~~~~~~lleCPvC~~~l~~P-----i~QC~nGHlaCssC~~~~-~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~G 115 (299)
T KOG3002|consen 42 TLLDLDLLDCPVCFNPLSPP-----IFQCDNGHLACSSCRTKV-SNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLG 115 (299)
T ss_pred cccchhhccCchhhccCccc-----ceecCCCcEehhhhhhhh-cccCCccccccccHHHHHHHHHHHhceecccccccC
Confidence 34457899999999999863 4567 355555554322 4589999986421 0111221
Q ss_pred ---------------CCCCCCceeeecc----cCcccccCCcchhhhhhhhcCCCceee-eCCCceEEEccCCcccccc
Q 014500 223 ---------------VCGTVENLWVCLI----CGFVGCGRYKEGHAVRHWKDTQHWYSL-DLRTQQIWDYVGDNYVHRL 281 (423)
Q Consensus 223 ---------------~C~~~~~lWiCL~----CG~vgCgRy~~~HA~~H~e~t~H~lal-~l~t~rVwcY~cd~yVHrl 281 (423)
.|.. ..|-|.. |.+.| + ..-...|+..+ |...+ .+.+.+++++.-|.+.+.+
T Consensus 116 C~~~~~Y~~~~~HE~~C~f--~~~~CP~p~~~C~~~G--~--~~~l~~H~~~~-hk~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
T KOG3002|consen 116 CTKSFPYGEKSKHEKVCEF--RPCSCPVPGAECKYTG--S--YKDLYAHLNDT-HKSDIITLTGFDFVFVATDENLLGA 187 (299)
T ss_pred Cceeecccccccccccccc--CCcCCCCCcccCCccC--c--HHHHHHHHHhh-ChhhhhhccccceecccCCcccccc
Confidence 1111 3454443 33332 2 34566787776 88744 4666788888888877654
No 98
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=75.86 E-value=11 Score=40.60 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
..+.|.|-.+|..+|-.+|..++..+- .|..++++++....++-...+.|.+.++|..-....||+.+.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG-~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFG-EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 346699999999999999999987663 588899988654344567999999999999999999999987
No 99
>PF04641 Rtf2: Rtf2 RING-finger
Probab=75.18 E-value=4 Score=40.28 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=37.0
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc-ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~-~~~CPvCR~~~ 213 (423)
.....|||....|.....-+...+|||+|-..++..-. +..||+|-..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f 160 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPF 160 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcc
Confidence 44668999999996544444567999999999988776 56688887654
No 100
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=74.99 E-value=1.5 Score=49.17 Aligned_cols=40 Identities=35% Similarity=0.752 Sum_probs=32.7
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhc-cc---ccCccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAK-WT---VLSCQVCRFC 212 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k-W~---~~~CPvCR~~ 212 (423)
..|++|++ .+. ...++|+|.|+..|+.+ |. ...||.||..
T Consensus 455 ~~c~ic~~-~~~----~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~ 498 (674)
T KOG1001|consen 455 HWCHICCD-LDS----FFITRCGHDFCVECLKKSIQQSENAPCPLCRNV 498 (674)
T ss_pred cccccccc-ccc----ceeecccchHHHHHHHhccccccCCCCcHHHHH
Confidence 89999999 433 56779999999999987 65 3579999964
No 101
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=74.75 E-value=3.4 Score=43.44 Aligned_cols=72 Identities=31% Similarity=0.405 Sum_probs=51.9
Q ss_pred CCCcCCCCCCCceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccccccccccccCCe
Q 014500 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKL 290 (423)
Q Consensus 218 ~~~C~~C~~~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVHrl~q~k~dgkl 290 (423)
...|.+--..-+.+.|+.||.-.=||....||+.|.-+.+|-..+++.|-..++-.-++| .-..-++.|+|.
T Consensus 29 ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~-ei~d~s~~~ikh 100 (442)
T KOG2026|consen 29 EKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENY-EIDDPSLGDIKH 100 (442)
T ss_pred CCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecchhc-cccCchhhhhhc
Confidence 345655555568999999999999999999999999999999999999955444333322 112234455554
No 102
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.75 E-value=1.4 Score=44.60 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=30.7
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
.|-||...+.. ++.+.|+|.|+..|-.+-. ...|++|-.
T Consensus 243 ~c~icr~~f~~----pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 243 KCFICRKYFYR----PVVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred ccccccccccc----chhhcCCceeehhhhccccccCCcceeccc
Confidence 69999999987 5677999999999976632 356777754
No 103
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=74.55 E-value=18 Score=38.70 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=54.7
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
..|.|..+|..+|..+|...++++ -.|..+.|.+.. ++...+++|.+.++|+.=....||+.+.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~-G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPY-GKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhcc-CCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 467889999999999999998876 468889888854 3457999999999999999999999874
No 104
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=74.48 E-value=48 Score=27.37 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~--sQLe~Qr~yyE~~l~~~~~ 355 (423)
++=+|+|..||..+.+ +.+..|+.=||.++..--.
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~ 39 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQ 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4557899999999866 5566788888887665444
No 105
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=73.88 E-value=0.84 Score=49.43 Aligned_cols=43 Identities=21% Similarity=0.655 Sum_probs=34.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc-------ccCcccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-------VLSCQVCRF 211 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~-------~~~CPvCR~ 211 (423)
.+.-.|-+|-+.-.+ ++...|.|.||..|+..+. +.+||+|-.
T Consensus 534 k~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred cCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 345689999998776 5677999999999997653 468999965
No 106
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=71.59 E-value=1.6 Score=34.12 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=26.4
Q ss_pred CcccccccccCCCCCCcCCCCCCCceeeecccCccc
Q 014500 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 240 (423)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vg 240 (423)
.||.|-.. .-.+|..|....+.+.|..||+.|
T Consensus 27 ~CPnCG~~----~I~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 27 LCPNCGEV----IIYRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eCCCCCCe----eEeechhHHhcCCceECCCCCCcC
Confidence 48999542 257899999999999999999976
No 107
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.50 E-value=2.5 Score=41.97 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
.---||||.+.|...+.-.+.-+|+|.|...|+.+.- +..||+|-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~ 267 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDK 267 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCC
Confidence 4457999999998876555667999999999999964 778999865
No 108
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.44 E-value=51 Score=31.64 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014500 326 AIVDEYNRLLATQLETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 326 ~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~ 358 (423)
+..+--.++=..+||.|+.|-|.+|...+++..
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~ 129 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEARAN 129 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778889999999999999998887543
No 109
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=70.83 E-value=1.7 Score=34.11 Aligned_cols=32 Identities=34% Similarity=0.802 Sum_probs=26.9
Q ss_pred CcccccccccCCCCCCcCCCCCCCceeeecccCccc
Q 014500 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVG 240 (423)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vg 240 (423)
.||.|-.. .-.+|..|-...+.+.|..||+.|
T Consensus 29 ~CPnCGe~----~I~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 29 PCPNCGEV----EIYRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred eCCCCCce----eeehhhhHHHcCCceECCCcCccC
Confidence 58999643 367899999999999999999976
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=70.52 E-value=2.1 Score=44.23 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=32.1
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc---ccccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WTVLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k---W~~~~CPvCR~~ 212 (423)
.|.--||.|.|.||-+......-+||-.-|.-|-.. -.+.+||.||..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 345569999999997654444556665555556322 236899999964
No 111
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=70.51 E-value=21 Score=36.97 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=57.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.++.|.|-.+|..+|-.||..+++.+ -.|..++|+++... ..+-...++|.+.+.|++=...+|+..|..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~f-G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKY-GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhc-CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 35679999999999999999988655 36788999985321 235689999999999999999999997753
No 112
>PHA02862 5L protein; Provisional
Probab=69.58 E-value=2.4 Score=38.94 Aligned_cols=42 Identities=21% Similarity=0.570 Sum_probs=29.5
Q ss_pred CCCCcccccccCCCCCcceeecCC-----Cccchhhhhcccc----cCcccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWTV----LSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~-----H~Fh~~Cl~kW~~----~~CPvCR~~~ 213 (423)
.+.|-||.+.-+++ ..||. .--|..|+.+|.+ ..||.|++..
T Consensus 2 ~diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 36799999975543 24663 2249999999973 5688888754
No 113
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=3.5 Score=42.74 Aligned_cols=43 Identities=26% Similarity=0.596 Sum_probs=29.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~ 212 (423)
.-.+.|.||++.-.+ ..-++|||.-++.-.++- ...||+||..
T Consensus 303 ~~p~lcVVcl~e~~~----~~fvpcGh~ccct~cs~~-l~~CPvCR~r 345 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS----AVFVPCGHVCCCTLCSKH-LPQCPVCRQR 345 (355)
T ss_pred CCCCceEEecCCccc----eeeecCCcEEEchHHHhh-CCCCchhHHH
Confidence 345689999998876 567899999653222222 3459999963
No 114
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=67.60 E-value=23 Score=37.41 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=57.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.+|..++..+- .|..++++++..+ .++-.+.+.|.+...|+.=...+||..|..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFG-DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD 364 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35799999999999999999887663 6888888885321 356789999999999999999999998863
No 115
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=67.36 E-value=22 Score=39.40 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
...+.|.|=.+|..++-.||..++..+- .|.++||+++..-.+|=...+.|.+.++|+.=....|+..+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G-~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAG-PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhC-CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 4568899999999999999999887653 688899999643346778999999999999999999987763
No 116
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.35 E-value=24 Score=32.93 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCC
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVA-DVNPLTTHFR 401 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~~ 401 (423)
.+..+.+++++.++|++.++|.+.|+ +......++|
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34567889999999999999999998 6666555543
No 117
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.19 E-value=2.4 Score=43.07 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=32.3
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRF 211 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~ 211 (423)
..||.|--.+... .-|.-|+|.|+..|+..-+ +..||.|-.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6899999998874 3455789999999998643 567999965
No 118
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=3.3 Score=41.15 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=35.6
Q ss_pred CCCCcccccccCCC--CCcceeecCCCccchhhhhccc---ccCccccccc
Q 014500 167 LPTCPICLERLDPD--TSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 212 (423)
Q Consensus 167 lptCpICLE~ld~~--~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~ 212 (423)
.|.|-||-+.+... ...+..+.|+|+|+..|..+-. ...||-||..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~ 53 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRET 53 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCc
Confidence 58899999998764 2234467899999999998855 3568999975
No 119
>PHA03096 p28-like protein; Provisional
Probab=66.75 E-value=2.4 Score=42.80 Aligned_cols=34 Identities=35% Similarity=0.757 Sum_probs=26.2
Q ss_pred CCCcccccccCCC-----CCcceeecCCCccchhhhhccc
Q 014500 168 PTCPICLERLDPD-----TSGILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 168 ptCpICLE~ld~~-----~~gi~t~~C~H~Fh~~Cl~kW~ 202 (423)
-.|.||+|....- .-|++ ..|+|.|+..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil-~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGIL-SEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhcccccccccc-ccCCcHHHHHHHHHHH
Confidence 7899999976431 22443 4799999999999997
No 120
>PLN03120 nucleic acid binding protein; Provisional
Probab=66.58 E-value=28 Score=34.88 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
...|.|=.+|...|-.||..|++.+ -.|.+++|+++.. .+-..-+.|.+..+|+.-.. .||..+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~-G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS-GDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 3578999999999999999998644 5999999999542 34578899999999998884 899888644
No 121
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=65.14 E-value=9.1 Score=33.98 Aligned_cols=108 Identities=9% Similarity=0.051 Sum_probs=55.2
Q ss_pred cccccc-cceeeecCccccc-cc-CCCCceeeeeeEEEEccCCCC-Cc--CC-CCCCCccEEEEEecCCCCCHHHHHHHh
Q 014500 14 PITIEE-AGFCTVSSTATRS-RA-NPNPKFSERRGLVHLFRGTSQ-SY--QQ-NPNSRSTCIFVVAVPNYLSSDEFVRFC 86 (423)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~-f~-sgnp~v~~~~G~vhl~r~~~~-~~--~~-~~~~~~~~lcilaVP~~ms~~d~l~F~ 86 (423)
++..+| .+...|...+-+= |. ..+.-.+-+.|.+||.++.+. .. .- ...+...+++=..|-..|.+...
T Consensus 11 e~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~---- 86 (130)
T smart00160 11 EVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPL---- 86 (130)
T ss_pred cccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeec----
Confidence 444433 3467777777663 44 357899999999999997654 11 10 00001122222222223322211
Q ss_pred cccccceeEEEEeec---CCCCCceEEEEEeCChhhHHHHHhhhC
Q 014500 87 GSHIDHVEELIFIRN---DAMEDRYSVLIKLVDQLTADEFYSNLN 128 (423)
Q Consensus 87 ~~~~~~I~~iriir~---~~~p~~ymvLikF~~q~~AdeF~~~~n 128 (423)
+ .......+... ++....-.-+|+|.+.+.|++|+..+.
T Consensus 87 ~---~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 87 A---GSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred C---CCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHH
Confidence 1 11111122221 111122357789999999999998763
No 122
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=64.18 E-value=17 Score=40.82 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 364 TVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 364 ~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
+.++.-..++++|+..+.+++.||+||. ++-...
T Consensus 26 ~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 26 ELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556789999999999999999998 544433
No 123
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=63.10 E-value=40 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 318 ALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 318 ~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
...++|++.-.++=.+.-+++| |.+|+.++.+ .+.++.+.+++++||++++.|.+.|+ +++
T Consensus 60 ~~FddkVnqSALteqQ~kasEL-------EKqLaaLrqE---------lq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 60 TTFDDKVRQHATTEMQVTAAQM-------QKQYEEIRRE---------LDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555544444444444 4445444322 12344566778888888888888887 664
No 124
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.96 E-value=1.5 Score=48.46 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=39.9
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFC 212 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~ 212 (423)
..+++..|+||+-++-...--++.+.|+|+-|..|+.+-.+.+|| |..-
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCcc
Confidence 346788999998877655445678999999999999998888999 7654
No 125
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.77 E-value=1.7 Score=33.64 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=29.6
Q ss_pred CCCcccccccCCCCCcceeecCCCc-cchhhhhc-cc--ccCccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHS-FQCSCTAK-WT--VLSCQVCRFC 212 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~k-W~--~~~CPvCR~~ 212 (423)
..|.||.|.--++ +.-.|+|. .+..|..+ |. ...||.||..
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRap 52 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAP 52 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhH
Confidence 6799999864432 34579997 36667655 76 5789999974
No 126
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=62.49 E-value=8.7 Score=29.80 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.3
Q ss_pred CCceEEEEEeCChhhHHHHHhh
Q 014500 105 EDRYSVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 105 p~~ymvLikF~~q~~AdeF~~~ 126 (423)
+...+|||+|.|.+.|.+||..
T Consensus 37 ~~~~~viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 37 DPDRVVIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp SSSEEEEEEESSHHHHHHHHCS
T ss_pred CCCeEEEEECCCHHHHHHHHCC
Confidence 4577999999999999999863
No 127
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.96 E-value=3.8 Score=38.89 Aligned_cols=38 Identities=29% Similarity=0.626 Sum_probs=24.8
Q ss_pred CCCCCCcccccc-cCCCCCc--ceeecCCCccchhhhhccc
Q 014500 165 TELPTCPICLER-LDPDTSG--ILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 165 ~ElptCpICLE~-ld~~~~g--i~t~~C~H~Fh~~Cl~kW~ 202 (423)
.++..|-||..- ++....- --...||..||.-|+..|.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWL 203 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWL 203 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHH
Confidence 356677777653 2211111 1257899999999999997
No 128
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=61.44 E-value=2.5 Score=36.05 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhh------ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCcEEEEEeccc
Q 014500 341 TQRQYYESLLAEAKSKRES------LIPET--VEKAVASKMQDIQNELDICEEAKKAVADV-NPLTTHFRSVILFFFGGV 411 (423)
Q Consensus 341 ~Qr~yyE~~l~~~~~~~~~------~i~~~--~~k~~~~k~~~lq~kl~~~~~E~~~l~~l-n~~L~~~~~~~~~~~~~~ 411 (423)
.||.+.|.+|.++++..+. +|.+- ..+.+.+|++.--.++.+-+++-+..++- .+++..-+..||=..|-+
T Consensus 4 ~~r~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~KmwilGlvgTi 83 (98)
T PF11166_consen 4 YQRHEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWILGLVGTI 83 (98)
T ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4788889999999976442 23221 12244455554444444433333334433 334665666666555555
Q ss_pred cceeee
Q 014500 412 GGCYLM 417 (423)
Q Consensus 412 ~~~~~~ 417 (423)
+|..+.
T Consensus 84 ~gslii 89 (98)
T PF11166_consen 84 FGSLII 89 (98)
T ss_pred HHHHHH
Confidence 555443
No 129
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=59.27 E-value=8.9 Score=35.45 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=42.0
Q ss_pred CcCCCCCC--CceeeecccCcccccCC---cchhhhhhhhcCCCc-eee----eCCCceEEEccCCc---cccccccccc
Q 014500 220 TCSVCGTV--ENLWVCLICGFVGCGRY---KEGHAVRHWKDTQHW-YSL----DLRTQQIWDYVGDN---YVHRLNQSKA 286 (423)
Q Consensus 220 ~C~~C~~~--~~lWiCL~CG~vgCgRy---~~~HA~~H~e~t~H~-lal----~l~t~rVwcY~cd~---yVHrl~q~k~ 286 (423)
.|.-||.. ..+-.|++|+.-+|--. ...|...|...++|- +.+ ++++..+-||.|.. |+=..+.+|+
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~NvF~LGFipak~ 81 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSRNVFLLGFIPAKS 81 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT----TTTEEEEEETT
T ss_pred CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCCceeeEEEEEecc
Confidence 46677743 45777888888777432 367999999998886 333 34457888999975 3333378888
Q ss_pred cCCeeeecC
Q 014500 287 DGKLVEMNS 295 (423)
Q Consensus 287 dgklvel~~ 295 (423)
|..+|-+-.
T Consensus 82 d~vvvllCR 90 (152)
T PF09416_consen 82 DSVVVLLCR 90 (152)
T ss_dssp SCEEEEEET
T ss_pred CCeEEEEeC
Confidence 877777753
No 130
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=58.22 E-value=5 Score=42.79 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=28.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 201 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW 201 (423)
.|...||||...+.+ ++.++|+|+.|..|...-
T Consensus 2 eeelkc~vc~~f~~e----piil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE----PIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccC----ceEeecccHHHHHHHHhh
Confidence 467899999999987 578899999999997653
No 131
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=58.02 E-value=58 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH-HHhhhhc-----cCCcEEEEEeccccce
Q 014500 377 QNELDICEEAKKAVA-DVNPLTT-----HFRSVILFFFGGVGGC 414 (423)
Q Consensus 377 q~kl~~~~~E~~~l~-~ln~~L~-----~~~~~~~~~~~~~~~~ 414 (423)
+..+..+++++..|. +|.-+|. ..+.+||=.=+|.||-
T Consensus 82 ~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGd 125 (363)
T COG0216 82 EEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGD 125 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCch
Confidence 333444444444443 3444443 3467999999999984
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=57.78 E-value=18 Score=33.92 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=50.7
Q ss_pred EEEEEecCCCCCHHHHHHHhccc-ccce--eEEEEee--cCCCCCceE-EEEEeCChhhHHHHHhhhCCCcCCCCCcCce
Q 014500 67 CIFVVAVPNYLSSDEFVRFCGSH-IDHV--EELIFIR--NDAMEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPAEAEVC 140 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~~~-~~~I--~~iriir--~~~~p~~ym-vLikF~~q~~AdeF~~~~ng~~Fnsle~e~C 140 (423)
=|-|=-+|..||-.+|+.-+.++ .+.+ ..+.... ...-++.|+ +-|.|.+.+++.+|...|+|..|-.-.
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k---- 84 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK---- 84 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT----
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC----
Confidence 46777899999999999977763 3331 3333222 122344565 889999999999999999999994221
Q ss_pred EEEEEEEEEEee
Q 014500 141 HMLFMLSVEYTE 152 (423)
Q Consensus 141 ~v~~v~~v~~~~ 152 (423)
-..+...|++..
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 123555566543
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=57.07 E-value=10 Score=29.45 Aligned_cols=43 Identities=30% Similarity=0.589 Sum_probs=32.0
Q ss_pred CCCCCcccccccCCCC--CcceeecCCCccchhhhhcccccCccccc
Q 014500 166 ELPTCPICLERLDPDT--SGILSTICDHSFQCSCTAKWTVLSCQVCR 210 (423)
Q Consensus 166 ElptCpICLE~ld~~~--~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR 210 (423)
--|+|-.|-..|.++. .-|-+.-| +|+.+|...-....||-|.
T Consensus 4 lrpnCE~C~~dLp~~s~~A~ICSfEC--TFC~~C~e~~l~~~CPNCg 48 (57)
T PF06906_consen 4 LRPNCECCDKDLPPDSPEAYICSFEC--TFCADCAETMLNGVCPNCG 48 (57)
T ss_pred cCCCccccCCCCCCCCCcceEEeEeC--cccHHHHHHHhcCcCcCCC
Confidence 3588999999987754 22334444 7999999888788899885
No 134
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.84 E-value=1.5e+02 Score=29.18 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcc
Q 014500 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTTH 399 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~ 399 (423)
..+....||..... +|..-|..+.+.|..+..+-.. -|.+-|...+...+.+..+.++.+|..-|+ +||+.+..
T Consensus 29 ~ee~~L~e~~kE~~-~L~~Er~~h~eeLrqI~~DIn~--lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 29 NEEKCLEEYRKEME-ELLQERMAHVEELRQINQDINT--LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777644 4444455555556555543211 111222223333444445555555555555 55555443
No 135
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=56.56 E-value=6.2 Score=33.59 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=29.3
Q ss_pred ccCcccccccccCCCCCC-cCCCCCCCceeeecccCcccc
Q 014500 203 VLSCQVCRFCHQQDERPT-CSVCGTVENLWVCLICGFVGC 241 (423)
Q Consensus 203 ~~~CPvCR~~~~~~~~~~-C~~C~~~~~lWiCL~CG~vgC 241 (423)
+..||.|..-..|-...+ |++|......--|.+||.+|=
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV 66 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGV 66 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecCCcc
Confidence 567888876555554444 888888777778999998875
No 136
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.07 E-value=1e+02 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYE 347 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE 347 (423)
..+=..+..+|...+...++..+.=++
T Consensus 116 ~N~C~e~~~~~~~~~~~~~~~~~~G~~ 142 (176)
T PF12999_consen 116 PNTCAELGKEYREELEEEEEIYKEGLK 142 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888998887666655554443
No 137
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=4.6 Score=43.79 Aligned_cols=62 Identities=24% Similarity=0.640 Sum_probs=49.2
Q ss_pred CCCCcCCCCCCC-ceee-ecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccccc
Q 014500 217 ERPTCSVCGTVE-NLWV-CLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (423)
Q Consensus 217 ~~~~C~~C~~~~-~lWi-CL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVHr 280 (423)
....|..|+.-. .+.+ |+.|+.++|- .+.|...|....+|-..+++.++..+||.|++||+-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 42 KTINCGTCGVLQIRLAVPCLICDSLGCL--SNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred ccceeEEechhhhhhcccceechhcccc--cccccccccccccccccceeehhhheeccCCcEeec
Confidence 345667776443 3444 8999999994 355788888889999999999999999999999964
No 138
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=55.18 E-value=76 Score=29.18 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhccCCc
Q 014500 382 ICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 382 ~~~~E~~~l~~ln~~L~~~~~ 402 (423)
....+++.|++|+.+|.+-+.
T Consensus 88 ~~~r~~~~L~~I~~AL~Ri~~ 108 (151)
T PRK10778 88 NRDRERKLIKKIEKTLKKVED 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 456777888899999988655
No 139
>smart00361 RRM_1 RNA recognition motif.
Probab=54.86 E-value=36 Score=26.30 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred ceeEEE-EeecCCC---CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 92 HVEELI-FIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 92 ~I~~ir-iir~~~~---p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.|..+. |+.+... ..+--+-+.|.+.++|..-.+..||+.|..
T Consensus 18 ~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 18 EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 666664 4442211 135569999999999999999999998874
No 140
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=54.82 E-value=46 Score=28.87 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 364 TVEKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 364 ~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
++.+.+...++++..+++...++...+--.+... ...++++-+-.|+||-
T Consensus 10 e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~-d~~~~ileI~aG~GG~ 59 (115)
T PF03462_consen 10 EMRELAEEEIEQLEEELEELEKELLDSLLPSDPY-DANNAILEIRAGAGGD 59 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSST-TTSEEEEEEEE-SSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCeEEEEecCCCch
Confidence 3344556667778888888887766544222223 3488999999999994
No 141
>PRK10722 hypothetical protein; Provisional
Probab=54.81 E-value=55 Score=32.56 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~ 402 (423)
+..+....||.+|+...+....|++|+.-|.--+.
T Consensus 180 ~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~ 214 (247)
T PRK10722 180 ALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQ 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45667788999999999999999999999965543
No 142
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=54.75 E-value=85 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
+.......|+.+++...+|++.|
T Consensus 60 ~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 60 ALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777765
No 143
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=54.27 E-value=37 Score=35.94 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=50.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccc-----------ccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCc
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH-----------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~-----------~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~ 131 (423)
.....|.|=.+|..+|-.+|..|+..+ ...|..+.+.+ ++-...+.|.+.+.|..-. .+||..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 456789999999999999999998754 12344444433 2335899999999999888 589988
Q ss_pred CCC
Q 014500 132 FSP 134 (423)
Q Consensus 132 Fns 134 (423)
|+.
T Consensus 247 ~~g 249 (509)
T TIGR01642 247 YSN 249 (509)
T ss_pred eeC
Confidence 865
No 144
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=1.1e+02 Score=34.16 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYY---ESLLAEAKSKRESLIPETVE-KAVASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yy---E~~l~~~~~~~~~~i~~~~~-k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
.++++.+..|-.. |..-+|.|+.=- |++|+++.++...++....+ .+...+...|+.+|....+++..|+ +||+
T Consensus 428 ~~~ve~l~~e~~~-L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 428 EETVERLEEENSE-LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444 456666666543 33444444443322221111 1234556666666666666666665 5555
Q ss_pred hh
Q 014500 396 LT 397 (423)
Q Consensus 396 ~L 397 (423)
+.
T Consensus 507 l~ 508 (652)
T COG2433 507 LR 508 (652)
T ss_pred HH
Confidence 54
No 145
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=53.26 E-value=49 Score=28.42 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCceeeeeeEEEEccCCCCCcC-----CCCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEee---cCCCCCce
Q 014500 37 NPKFSERRGLVHLFRGTSQSYQ-----QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIR---NDAMEDRY 108 (423)
Q Consensus 37 np~v~~~~G~vhl~r~~~~~~~-----~~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir---~~~~p~~y 108 (423)
++..+.+.|.+||.++.+.... ..+ -..+++=..|...|.+.. ....-..+..+. .+.-+.--
T Consensus 27 ~~W~erG~G~l~i~~~k~~~~~RlvmR~d~--~~kv~lN~~i~~~m~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 97 (122)
T PF00638_consen 27 KEWKERGVGTLKILKHKETGKYRLVMRRDG--TGKVLLNHPIFKGMKLKP-------MKGSEKSLVWTAIDYADEEGKPE 97 (122)
T ss_dssp TEEEEEEEEEEEEEEETTSCEEEEEEEETT--TTEEEEEEE--TTC-EEE-------STTTTTEEEEEEEECTTSSSEEE
T ss_pred CCccccceeEEEEEEccCCcceEEEEEEcc--cCceeEEEEecCCceecc-------cccCCcEEEEEeccccCCCCceE
Confidence 6789999999999987654221 112 223444344555554421 111111222221 12222345
Q ss_pred EEEEEeCChhhHHHHHhhhC
Q 014500 109 SVLIKLVDQLTADEFYSNLN 128 (423)
Q Consensus 109 mvLikF~~q~~AdeF~~~~n 128 (423)
..+|+|.+.+.|++|+..+.
T Consensus 98 ~~~irf~~~e~a~~f~~~i~ 117 (122)
T PF00638_consen 98 TYLIRFKSAEDADEFKKKIE 117 (122)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHH
Confidence 78899999999999998763
No 146
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.09 E-value=92 Score=34.02 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 014500 341 TQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 341 ~Qr~yyE~~l~~~~~~~~~~ 360 (423)
.-+..|+..+.+++++.+.+
T Consensus 311 ~~~~e~~~~~~~l~~~~~~~ 330 (582)
T PF09731_consen 311 ELREEFEREREELEEKYEEE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 147
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=52.98 E-value=1.7e+02 Score=26.09 Aligned_cols=9 Identities=67% Similarity=0.962 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 014500 346 YESLLAEAK 354 (423)
Q Consensus 346 yE~~l~~~~ 354 (423)
|+.+|.+++
T Consensus 61 ~~~~l~~a~ 69 (156)
T PRK05759 61 YEAQLAEAR 69 (156)
T ss_pred HHHHHHHHH
Confidence 333333333
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.53 E-value=1.3e+02 Score=29.92 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHhhhhccC-CcEEEEEeccc-cceeeeeee
Q 014500 373 MQDIQNELDICEEAKK--AVADVNPLTTHF-RSVILFFFGGV-GGCYLMLLI 420 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~--~l~~ln~~L~~~-~~~~~~~~~~~-~~~~~~~~~ 420 (423)
.+.+.++.+.+..++. .|.......... ..++.-+=|.+ |||..+|-.
T Consensus 158 ~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~ 209 (239)
T COG1579 158 GQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHMKLPS 209 (239)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCCcccCCeeeecH
Confidence 3334444444443332 344445555556 55566666665 888887743
No 149
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=52.51 E-value=1.3e+02 Score=24.85 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhccCCc
Q 014500 344 QYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA----DVNPLTTHFRS 402 (423)
Q Consensus 344 ~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~----~ln~~L~~~~~ 402 (423)
.+|+.++..++++... +-..+++.-..+...|+...+.+..+...|. .++..|.++++
T Consensus 46 ~~f~~l~~~L~~~e~~-ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~ 107 (127)
T smart00502 46 AAFDELRNALNKRKKQ-LLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDP 107 (127)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455554444443322 2222233333344444444444444444332 35555665544
No 150
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.18 E-value=43 Score=33.18 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014500 340 ETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~ 395 (423)
-+||.-|..+..++|++..+.-.+ .......+++|++.=-|+-+.+.+|..-+.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~--~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQT--ISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 379999999999999875322221 123345666666666677777777765554
No 151
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.79 E-value=1.2e+02 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
+..+||+....+...+..|+..|+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554
No 152
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=51.47 E-value=4.8 Score=45.07 Aligned_cols=44 Identities=32% Similarity=0.634 Sum_probs=35.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc---cc--ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK---WT--VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k---W~--~~~CPvCR~~ 212 (423)
.-.+.||||++..-. ..++.|+|.|+..|+.. |. ...||+|+..
T Consensus 19 ~k~lEc~ic~~~~~~----p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 19 QKILECPICLEHVKE----PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred hhhccCCceeEEeec----cchhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 346899999999876 36789999999999876 43 3679999853
No 153
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=51.13 E-value=1.5e+02 Score=27.78 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 014500 336 ATQLETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~~~ 360 (423)
..+.+..+.=||.+|.+++.++...
T Consensus 78 ~~eA~~~~~eye~~L~~Ar~EA~~i 102 (181)
T PRK13454 78 KQKAVEAEKAYNKALADARAEAQRI 102 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544433
No 154
>PF12773 DZR: Double zinc ribbon
Probab=50.56 E-value=18 Score=26.32 Aligned_cols=19 Identities=37% Similarity=0.851 Sum_probs=8.2
Q ss_pred CCcCCCCCC--CceeeecccC
Q 014500 219 PTCSVCGTV--ENLWVCLICG 237 (423)
Q Consensus 219 ~~C~~C~~~--~~lWiCL~CG 237 (423)
..|..|+.. .+...|..||
T Consensus 30 ~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 30 KICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCcCCcCCCcCCcCccCccc
Confidence 345555543 1233454444
No 155
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.48 E-value=1.1e+02 Score=24.74 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhccCC
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVNPLTTHFR 401 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~~ 401 (423)
....|+....+++.|..... .|+..|.|.+
T Consensus 40 e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555555555554 5555555543
No 156
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=50.19 E-value=53 Score=28.51 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=51.6
Q ss_pred ceeeecCccccc-ccCC-CCceeeeeeEEEEccCCCCCcC-----CCCCCCccEEEEEecCCCCCHHHHHHHhcccccce
Q 014500 21 GFCTVSSTATRS-RANP-NPKFSERRGLVHLFRGTSQSYQ-----QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHV 93 (423)
Q Consensus 21 ~~~~~~~~~~~~-f~sg-np~v~~~~G~vhl~r~~~~~~~-----~~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I 93 (423)
+.-.|...+-+= |..+ +...+-+.|.+||.++.+.... ..+ ...+++=..|-..|.+. ..+. .-
T Consensus 10 E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~--~~kv~lN~~i~~~~~~~----~~~~---~~ 80 (122)
T cd00835 10 EEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQ--VLKLCLNHKLVPGMKLQ----PMGN---SD 80 (122)
T ss_pred cEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCC--ccEEEEeeEecCCcEEe----ecCC---CC
Confidence 344455555553 4333 6788999999999997652211 011 12222222223333222 1110 01
Q ss_pred eEEEEeecCCC---CCceEEEEEeCChhhHHHHHhhhCC
Q 014500 94 EELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 94 ~~iriir~~~~---p~~ymvLikF~~q~~AdeF~~~~ng 129 (423)
..+++.-.|.. +..-..+|+|.+.+.|++|+..++.
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~ 119 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEE 119 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHH
Confidence 12222211211 2233688999999999999987753
No 157
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=49.79 E-value=13 Score=41.80 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=37.1
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccccccCCCCCCcCCCCCC-Cceee
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTV-ENLWV 232 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~~~~~~~C~~C~~~-~~lWi 232 (423)
.||-|-....+ ++.||..|-.+-....||.|.+.. +.+...|..||.. ...|-
T Consensus 3 ~Cp~Cg~~n~~----------~akFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~~~~~~~ 56 (645)
T PRK14559 3 ICPQCQFENPN----------NNRFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAETGTIWW 56 (645)
T ss_pred cCCCCCCcCCC----------CCccccccCCCCCCCcCCCCCCCC-CcccccccccCCcccchhh
Confidence 58888766543 346888887766656899998864 4556689999976 34453
No 158
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=49.66 E-value=61 Score=36.05 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=55.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccc-ccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSH-IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~-~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+|.|=.+|..+|-.+|.++++.+ .-.|..++++++ ...+.|.+.++|+.=....||..|..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 35789999999999999999999877 358888888872 57899999999999999999998864
No 159
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=9.7 Score=38.60 Aligned_cols=43 Identities=28% Similarity=0.617 Sum_probs=30.0
Q ss_pred CCcccccc--cCCCCCcceeecCCCccchhhhhccc---ccCccccccc
Q 014500 169 TCPICLER--LDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFC 212 (423)
Q Consensus 169 tCpICLE~--ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~ 212 (423)
.||+|-.. +.++.--. .-+|+|.-|.+|+.... +..||.|-..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~-in~C~H~lCEsCvd~iF~~g~~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLM-INECGHRLCESCVDRIFSLGPAQCPECMVI 49 (300)
T ss_pred CCcccccceecCccceee-eccccchHHHHHHHHHHhcCCCCCCcccch
Confidence 58999874 33433222 33999999999998843 5678888753
No 160
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=49.08 E-value=1e+02 Score=26.42 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~~~ 360 (423)
.|..+++.||+-...+-.++++++...
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~Aa 29 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSAA 29 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998876544
No 161
>PLN03121 nucleic acid binding protein; Provisional
Probab=48.87 E-value=92 Score=31.00 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=53.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
...+|.|-.++...|..||-.|++ +.-.|.+++|+++... .-...+.|.+..+|+.=. ..||..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~et--~gfAfVtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSGEY--ACTAYVTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCCCc--ceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence 346899999999999999998875 3559999999996432 347899999999885544 7899988543
No 162
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=48.82 E-value=1.5e+02 Score=26.57 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRESLIPETV 365 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~ 365 (423)
-+..+++..+.=|+..|.+++.++...+.++.
T Consensus 52 ~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~ 83 (141)
T PRK08476 52 TNSSDVSEIEHEIETILKNAREEANKIRQKAI 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999988776655543
No 163
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.60 E-value=1.5e+02 Score=25.96 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQD--IQNELDICEEAKKAVA 391 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~--lq~kl~~~~~E~~~l~ 391 (423)
|..|+.=....+.++++ +|+++....-..|+.+ ++.++.|..+.+..|.
T Consensus 49 L~~q~~s~~qr~~eLqa----ki~ea~~~le~eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQA----KIDEARRNLEDEKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44444444444444444 3444422222345544 6677777777777665
No 164
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.40 E-value=11 Score=36.45 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=25.4
Q ss_pred CcccccccCCCCCcceeecCCCc-cchhhhhcccccCccccccc
Q 014500 170 CPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFC 212 (423)
Q Consensus 170 CpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~ 212 (423)
|-.|-++-- .++.+||+|- +|..|-.. -..||+|+..
T Consensus 161 Cr~C~~~~~----~VlllPCrHl~lC~~C~~~--~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREA----TVLLLPCRHLCLCGICDES--LRICPICRSP 198 (207)
T ss_pred ceecCcCCc----eEEeecccceEeccccccc--CccCCCCcCh
Confidence 999988743 3789999985 45556433 3358888753
No 165
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=47.62 E-value=8.9 Score=46.50 Aligned_cols=41 Identities=29% Similarity=0.826 Sum_probs=27.9
Q ss_pred CCccccc-ccCCCCCcceeecCCCccchhhhh-----cccc-------cCcccccc
Q 014500 169 TCPICLE-RLDPDTSGILSTICDHSFQCSCTA-----KWTV-------LSCQVCRF 211 (423)
Q Consensus 169 tCpICLE-~ld~~~~gi~t~~C~H~Fh~~Cl~-----kW~~-------~~CPvCR~ 211 (423)
.|-||.. ++... -.+.+-|+|.||-.|.. +|.. .+||.|..
T Consensus 3488 mCmICFTE~L~AA--P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n 3541 (3738)
T KOG1428|consen 3488 MCMICFTEALSAA--PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKN 3541 (3738)
T ss_pred eEEEEehhhhCCC--cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccc
Confidence 4555543 33332 24578999999999985 4873 47999985
No 166
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.49 E-value=59 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
.+.++.+..+..-+|+..|-++|.+
T Consensus 34 ~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 34 ALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666653
No 167
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=47.44 E-value=79 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
-++.+++-.-... ..++|.+|.|||++-+.+..
T Consensus 39 ~~lt~mH~~LL~~-i~~~ee~R~~~E~lQdkL~q 71 (96)
T PF12210_consen 39 QTLTAMHPQLLKY-IQEQEEKRVYYEGLQDKLAQ 71 (96)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444333222 36899999999998877764
No 168
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.39 E-value=83 Score=34.39 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcc
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVNPLTTH 399 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~ 399 (423)
+...+++++-+|+.+.+....|+ .|...|.|
T Consensus 465 ~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk 496 (507)
T PF05600_consen 465 AQEEQQELEPKLDALVERTRELQKQIEADISK 496 (507)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888887 67776654
No 169
>smart00030 CLb CLUSTERIN Beta chain.
Probab=46.87 E-value=65 Score=31.17 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH
Q 014500 370 ASKMQDIQNELDICEEAKK-AVA 391 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~-~l~ 391 (423)
..+.++|..-|++++++|+ +|+
T Consensus 42 ~eeh~~ll~tLe~~kk~KeeAlk 64 (206)
T smart00030 42 NKERKSLLSTLEEAKKKKEEALK 64 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776 555
No 170
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.75 E-value=96 Score=28.02 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=56.9
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
...|.|-.+|..+|-.+|..++..+- .|..+++.++. ....+-...+.|.+...|..-...+||..|..-
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g-~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG-PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 48899999999999999999886542 44777777742 224577899999999999999999999888744
No 171
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=46.41 E-value=96 Score=30.83 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=61.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcCceEE
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVCHM 142 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~-~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e~C~v 142 (423)
.-.+|+|-++|...-+.++...++++. -.=+++|.-...+-+..-..-..|.|+..|.+-.+..||.+|. ||+-..
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD---pE~~st 109 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD---PETGST 109 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec---cccCce
Confidence 357899999999999999999888773 2445565544332233447888999999999999999999996 343333
Q ss_pred EEEEEEEEeec
Q 014500 143 LFMLSVEYTEL 153 (423)
Q Consensus 143 ~~v~~v~~~~~ 153 (423)
..||+.++
T Consensus 110 ---LhiElAKS 117 (284)
T KOG1457|consen 110 ---LHIELAKS 117 (284)
T ss_pred ---eEeeehhc
Confidence 34555544
No 172
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.35 E-value=2.1e+02 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQ 342 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Q 342 (423)
+++.+.+..+|...|..--.+=
T Consensus 78 ~~eA~~~~~eye~~L~~Ar~EA 99 (181)
T PRK13454 78 KQKAVEAEKAYNKALADARAEA 99 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888887755444333
No 173
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=45.99 E-value=24 Score=38.69 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=51.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|-|+.||..+|-++|++.++.+ =+||-||.. ...+..|.+.|.|...|+.=.+..|++.+-.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t-~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRET-PNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhh----cchhhhhcc-cccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 5779999999999999999998743 234445532 2347799999999999999888888887754
No 174
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=45.60 E-value=4.7 Score=47.94 Aligned_cols=47 Identities=28% Similarity=0.708 Sum_probs=38.1
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.+...+.|++|++.+..- .| ...|+|.+++.|...|. .+.||.|...
T Consensus 1149 ~~~~~~~c~ic~dil~~~-~~--I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQ-GG--IAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhc-CC--eeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 356788999999999842 22 44799999999999998 5789999864
No 175
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.40 E-value=1.6e+02 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQ 342 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Q 342 (423)
++-++..||.--...+|.+|
T Consensus 62 rLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677778855444444444
No 176
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.13 E-value=1.6e+02 Score=35.03 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hh---ccHHHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKR---------------------ES---LIPETVEKAVASKMQDIQN 378 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~---------------------~~---~i~~~~~k~~~~k~~~lq~ 378 (423)
-++.+...|.+=-.+-||.||.-||..|+++.+.- .. +-+++.+......|..|..
T Consensus 584 ~~~~le~qheEeKr~ALE~Qr~~yE~~~eqLr~~lsPst~~~~~~~~~~a~~s~taq~k~~~WAeerdemf~~SL~rLr~ 663 (1714)
T KOG0241|consen 584 VVQSLEKQHEEEKRSALEEQRLMYERELEQLRQQLSPSTQPQPSGMDRLAYSSQTAQQKVTQWAEERDEMFRQSLARLRE 663 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788899999999999999998731 01 1122222333444555554
Q ss_pred HH---HHHHHHHHHHH-HHhhh
Q 014500 379 EL---DICEEAKKAVA-DVNPL 396 (423)
Q Consensus 379 kl---~~~~~E~~~l~-~ln~~ 396 (423)
.+ +.+..|..||. +|++.
T Consensus 664 ~iv~AN~LVrEAN~laeEm~Kk 685 (1714)
T KOG0241|consen 664 QIVKANTLVREANFLAEEMSKK 685 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 44 44577888887 77765
No 177
>PRK14873 primosome assembly protein PriA; Provisional
Probab=45.11 E-value=13 Score=41.80 Aligned_cols=35 Identities=29% Similarity=0.682 Sum_probs=25.9
Q ss_pred Ccccccccc---cCCCCCCcCCCCCCCceeeecccCcc
Q 014500 205 SCQVCRFCH---QQDERPTCSVCGTVENLWVCLICGFV 239 (423)
Q Consensus 205 ~CPvCR~~~---~~~~~~~C~~C~~~~~lWiCL~CG~v 239 (423)
.||.|-..- .......|..||.....|.|..||..
T Consensus 394 ~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 394 RCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred ECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 577776432 12345789999988789999999874
No 178
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=44.92 E-value=15 Score=28.90 Aligned_cols=19 Identities=37% Similarity=1.135 Sum_probs=12.2
Q ss_pred CcCCCCCC-------CceeeecccCc
Q 014500 220 TCSVCGTV-------ENLWVCLICGF 238 (423)
Q Consensus 220 ~C~~C~~~-------~~lWiCL~CG~ 238 (423)
.|..||.. ..-|.||.|..
T Consensus 32 VCnlCGFNP~Phl~E~~eWLCLnCQ~ 57 (61)
T PF05715_consen 32 VCNLCGFNPTPHLTEVKEWLCLNCQM 57 (61)
T ss_pred hhcccCCCCCccccccceeeeecchh
Confidence 35555543 25899998864
No 179
>PRK05589 peptide chain release factor 2; Provisional
Probab=44.74 E-value=1.6e+02 Score=30.50 Aligned_cols=15 Identities=40% Similarity=0.642 Sum_probs=12.9
Q ss_pred CCcEEEEEeccccce
Q 014500 400 FRSVILFFFGGVGGC 414 (423)
Q Consensus 400 ~~~~~~~~~~~~~~~ 414 (423)
...++|-+-+|+||-
T Consensus 84 ~~~~~leI~aG~GG~ 98 (325)
T PRK05589 84 RNNAILTLHSGVGGT 98 (325)
T ss_pred CCCeEEEEECCCCch
Confidence 467999999999995
No 180
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.69 E-value=1.6e+02 Score=23.54 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 370 ASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
..+++.+....++++.|..+|+ ++..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666 4433
No 181
>PHA00626 hypothetical protein
Probab=44.51 E-value=14 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=25.9
Q ss_pred CcccccccccCCCCCCcCCCCCCCceeeecccCcccc
Q 014500 205 SCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGC 241 (423)
Q Consensus 205 ~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vgC 241 (423)
.||-|-.. +-.+|..|....+.+.|-.||+..-
T Consensus 2 ~CP~CGS~----~Ivrcg~cr~~snrYkCkdCGY~ft 34 (59)
T PHA00626 2 SCPKCGSG----NIAKEKTMRGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCc----eeeeeceecccCcceEcCCCCCeec
Confidence 58888653 3568889988889999999998643
No 182
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=11 Score=39.85 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc----------ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----------VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----------~~~CPvCR~~ 212 (423)
.-+-.|-||.+..-.. .-+.-+||+|.|+..|+...- ...||.+.+-
T Consensus 182 ~slf~C~ICf~e~~G~-~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQ-HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCc-ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3467899999875431 236688999999999997753 2468888764
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.27 E-value=2.6e+02 Score=27.02 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhc
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA--DVNPLTT 398 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~--~ln~~L~ 398 (423)
+..++.+..+.+.+ .+++.+...=.++.+++.+... .++.++ -+.+..++++++++++.++.+.+.++ .+.+-..
T Consensus 99 e~el~~l~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~-~~L~~~-n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 99 ENQVKTLTDKLNNI-DNTWNQRTAEMQQKVAQSDSVI-NGLKEE-NQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666664 3444444444455555533321 123333 34667888889999998888888887 3444444
Q ss_pred cCCcE
Q 014500 399 HFRSV 403 (423)
Q Consensus 399 ~~~~~ 403 (423)
-+.-|
T Consensus 176 ~Gg~v 180 (206)
T PRK10884 176 YGGGV 180 (206)
T ss_pred HchHH
Confidence 44443
No 184
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=44.25 E-value=10 Score=25.77 Aligned_cols=10 Identities=50% Similarity=1.434 Sum_probs=6.9
Q ss_pred ceeeecccCc
Q 014500 229 NLWVCLICGF 238 (423)
Q Consensus 229 ~lWiCL~CG~ 238 (423)
..|.|.+||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 5677777765
No 185
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.16 E-value=2.2e+02 Score=26.42 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~ 358 (423)
+-.+++|.++.-|+..+++++.+..
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999998887643
No 186
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.93 E-value=18 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.594 Sum_probs=25.6
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhh
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSC 197 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~C 197 (423)
+...|++|-++|.+..+.++=..|+-.+|+.|
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 45789999999954445566778999999999
No 187
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.88 E-value=95 Score=32.23 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 324 ~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
.+.+..||..| -|+.|. |..+++++.+
T Consensus 6 W~eL~~efq~L----qethr~-Y~qKleel~~ 32 (330)
T PF07851_consen 6 WEELQKEFQEL----QETHRS-YKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHH----HHHHHH-HHHHHHHHHH
Confidence 35566666655 233333 5555555544
No 188
>PF14369 zf-RING_3: zinc-finger
Probab=43.83 E-value=10 Score=26.47 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.2
Q ss_pred ceEEEccCCcccccc
Q 014500 267 QQIWDYVGDNYVHRL 281 (423)
Q Consensus 267 ~rVwcY~cd~yVHrl 281 (423)
++.|||.|+..|+..
T Consensus 1 ~~ywCh~C~~~V~~~ 15 (35)
T PF14369_consen 1 QRYWCHQCNRFVRIA 15 (35)
T ss_pred CCEeCccCCCEeEeC
Confidence 468999999998753
No 189
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.71 E-value=8.6 Score=43.79 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=37.0
Q ss_pred CCCCCCcccccccCCCCCcceeec---CCCccchhhhhcccc--------cCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTI---CDHSFQCSCTAKWTV--------LSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~---C~H~Fh~~Cl~kW~~--------~~CPvCR~~~ 213 (423)
.+.-+|++|.-.+..++.+....+ |+|.||..||.+|.+ ..|+.|..+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 445688888888776555555555 999999999999973 4688887765
No 190
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.68 E-value=1.3e+02 Score=25.54 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
||..|++.|+..|..+.+. ..+++....+++.++++++.|.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~-------------~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQ-------------LQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666655554442 1234444445555555555554
No 191
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.21 E-value=9 Score=39.00 Aligned_cols=40 Identities=23% Similarity=0.602 Sum_probs=28.7
Q ss_pred CCCCCcccccccCCCCCcceeecCCCcc-chhhhhcccccCcccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSF-QCSCTAKWTVLSCQVCRF 211 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~F-h~~Cl~kW~~~~CPvCR~ 211 (423)
+.--|.||.+.-.+ -+-+.|||.- +..|..... .||+||.
T Consensus 299 ~~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm~--eCPICRq 339 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD----CVFLECGHMVTCTKCGKRMN--ECPICRQ 339 (350)
T ss_pred HHHHHHHHhcCCcc----eEEeecCcEEeehhhccccc--cCchHHH
Confidence 36679999886544 5678999986 555654443 7999995
No 192
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.11 E-value=1.2e+02 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 347 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 347 E~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
....++.+++.+.+|++. ++.+ .+++++|.++..+++.-..|. +|+
T Consensus 115 ~~~Vd~~~~eL~~eI~~L-~~~i-~~le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQL-EKEI-QRLEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544 2222 455555555555555555554 443
No 193
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=43.10 E-value=1.3e+02 Score=28.38 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014500 340 ETQRQYYESLLAEAKSKRESLIPE---TVEK-AVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~~~i~~---~~~k-~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
+-|-+|||.++....++.....+. .+|+ .+..+++..++++.+|..-+..+
T Consensus 112 ~~qhqd~Errl~~m~~~r~l~l~q~s~~vEqq~lqqel~~~e~RlarCr~Aleki 166 (175)
T COG3923 112 LAQHQDYERRLLAMVQDRRLQLAQQSDLVEQQKLQQELEAYEQRLARCRHALEKI 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999988877655443 3343 46778888899999997655444
No 194
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.93 E-value=10 Score=43.61 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=27.9
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW 201 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW 201 (423)
....+|-+|--.+-.- .....+|+|.||.+|+.+-
T Consensus 815 ep~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcC--cceeeeccchHHHHHHHHH
Confidence 4567999999987642 3567899999999999764
No 195
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.86 E-value=7.4 Score=38.90 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=32.9
Q ss_pred CCCCCcccccccCCCCCcceeecC-----CCccchhhhhcccc----------cCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTIC-----DHSFQCSCTAKWTV----------LSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C-----~H~Fh~~Cl~kW~~----------~~CPvCR~~~ 213 (423)
..-.|=||...=+++...-=..|| +|--|.+|+..|-+ -+||.|++..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 355788898765554322224566 46679999999952 3799999864
No 196
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=42.40 E-value=9.8 Score=28.42 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 014500 374 QDIQNELDICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~~ln~~L~~~~~ 402 (423)
+.+.-+...+++|.+.|++||+.|-..-+
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrdLfdFSt 42 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRDLFDFST 42 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHHHHhhhh
Confidence 45666778899999999999998865443
No 197
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.38 E-value=1.3e+02 Score=27.91 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~ 360 (423)
...+.+..+..||..|.+++.++.+-
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777766655443
No 198
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=42.37 E-value=12 Score=38.88 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcc----cccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW----TVLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW----~~~~CPvCR~~ 212 (423)
.|...|-||.+.+.- ...+||+|.-|-.|.-+. ....||.||+.
T Consensus 59 Een~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTY----SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceE----EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 457799999998765 357899999998897663 36789999986
No 199
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.29 E-value=19 Score=34.71 Aligned_cols=13 Identities=38% Similarity=1.288 Sum_probs=10.5
Q ss_pred ceeeecccCcccc
Q 014500 229 NLWVCLICGFVGC 241 (423)
Q Consensus 229 ~lWiCL~CG~vgC 241 (423)
.+|+|..||+.+=
T Consensus 47 ~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 47 EVWVCPHCGYAAF 59 (214)
T ss_pred eEEECCCCCCccc
Confidence 5899999999644
No 200
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.76 E-value=1.6e+02 Score=28.70 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 324 ~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.+.+..+|.++ .++|++.+..=+.+++-++ ++ ..+++. -++..+|..++.+++..+.+++.|+
T Consensus 127 ~~DvT~~y~D~-~arl~~l~~~~~rl~~ll~-ka-~~~~d~--l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 127 SEDVTEQYVDL-EARLKNLEAEEERLLELLE-KA-KTVEDL--LEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred ccchHHHHHHH-HHHHHHHHHHHHHHHHHHH-hc-CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788876 3455555544333333222 11 133332 1456777888888888888888887
No 201
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=41.65 E-value=2.1e+02 Score=28.64 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQR 343 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr 343 (423)
..|++.|...=..++.+|||-=|
T Consensus 177 ~~q~~k~~~~qv~~in~qlErLR 199 (289)
T COG4985 177 RDQVDKMVEQQVRVINSQLERLR 199 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667778876433
No 202
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.61 E-value=21 Score=29.28 Aligned_cols=43 Identities=28% Similarity=0.643 Sum_probs=31.2
Q ss_pred CCCCcccccccCCCCCcceeecC--CCccchhhhhcccccCcccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTIC--DHSFQCSCTAKWTVLSCQVCRF 211 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C--~H~Fh~~Cl~kW~~~~CPvCR~ 211 (423)
-|.|--|-..|.++... ...| .++|+.+|...-.+..||-|--
T Consensus 5 RPnCECCDrDLpp~s~d--A~ICtfEcTFCadCae~~l~g~CPnCGG 49 (84)
T COG3813 5 RPNCECCDRDLPPDSTD--ARICTFECTFCADCAENRLHGLCPNCGG 49 (84)
T ss_pred cCCCcccCCCCCCCCCc--eeEEEEeeehhHhHHHHhhcCcCCCCCc
Confidence 47888888888765322 2234 4699999998877888999963
No 203
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.36 E-value=74 Score=31.12 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 014500 332 NRLLATQLETQRQ 344 (423)
Q Consensus 332 ~~lL~sQLe~Qr~ 344 (423)
++.+..|++++-.
T Consensus 136 ~~~lk~~~~~~~~ 148 (216)
T KOG1962|consen 136 NEALKKQLENSSK 148 (216)
T ss_pred HHHHHHhhhcccc
Confidence 3444445554444
No 204
>PRK06328 type III secretion system protein; Validated
Probab=41.21 E-value=2.5e+02 Score=27.25 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 014500 330 EYNRLLA 336 (423)
Q Consensus 330 EY~~lL~ 336 (423)
+|..+|.
T Consensus 24 ~~~~~~~ 30 (223)
T PRK06328 24 AFSALLD 30 (223)
T ss_pred HHHHHHh
Confidence 3444443
No 205
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=41.01 E-value=1.2e+02 Score=30.18 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
...-+|.+...| +.+||.|-+||+.+..++.+
T Consensus 72 ~~~~LeeliNkW----s~el~~Qe~vF~~q~~qvNa 103 (254)
T KOG2196|consen 72 TYKTLEELINKW----SLELEEQERVFLQQATQVNA 103 (254)
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Confidence 345577777766 57899999999999999886
No 206
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=40.58 E-value=1.1e+02 Score=23.04 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.3
Q ss_pred cccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHh
Q 014500 89 HIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYS 125 (423)
Q Consensus 89 ~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~ 125 (423)
..+......+.+...-|++|+++-.++|.++-++|.+
T Consensus 32 ~~~G~~~~~~~~~~~~~~~~~~~~~W~s~~a~~~~~~ 68 (78)
T PF03992_consen 32 KEPGCLSYELYRSLDDPNRYVIVERWESEEAFQAHFK 68 (78)
T ss_dssp TSTTEEEEEEEEESSSTTEEEEEEEESSHHHHHHHHT
T ss_pred cCCCcEEEEEEEecCCCCEEEEEEEECCHHHHHHHHc
Confidence 3567888899996667999999999999888776654
No 207
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=39.92 E-value=62 Score=34.81 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 014500 360 LIPETVEKAVASKMQDIQNELDICEEAKK-AVAD 392 (423)
Q Consensus 360 ~i~~~~~k~~~~k~~~lq~kl~~~~~E~~-~l~~ 392 (423)
+|+..++|. ..+.++|...|.++++||+ +|+.
T Consensus 27 qMK~~Mek~-eeeh~~Lm~tL~k~kk~KeeAl~l 59 (436)
T PF01093_consen 27 QMKTMMEKT-EEEHKELMKTLEKSKKEKEEALKL 59 (436)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 5677888888888888877 5553
No 208
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.70 E-value=2.6e+02 Score=26.75 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
-+..+.+..+.=||..|.+++.++...+.+
T Consensus 98 ~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 98 RLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677777766665544443
No 209
>PHA03395 p10 fibrous body protein; Provisional
Probab=39.68 E-value=32 Score=28.99 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
-|++..|...||+.++.+++....+.+||..|.
T Consensus 13 Ikavd~KVdalQ~~V~~l~~nlpdv~~l~~kLd 45 (87)
T PHA03395 13 IKAVSDKVDALQAAVDDVRANLPDVTEINEKLD 45 (87)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 568888888888888888766665555555543
No 210
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=15 Score=38.40 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=31.4
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.|...||||--.=- + .+-.||+|.-|..|+.+.. ...|=.|++.
T Consensus 420 sEd~lCpICyA~pi---~-Avf~PC~H~SC~~CI~qHlmN~k~CFfCktT 465 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---N-AVFAPCSHRSCYGCITQHLMNCKRCFFCKTT 465 (489)
T ss_pred cccccCcceecccc---h-hhccCCCCchHHHHHHHHHhcCCeeeEecce
Confidence 57889999986522 2 3456999999999999865 3445555543
No 211
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.55 E-value=24 Score=41.51 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=32.1
Q ss_pred cceeecCCCccchhhhhcccccCcccccccccCCCCCCcCCCCCCCceeeecccCcc
Q 014500 183 GILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFV 239 (423)
Q Consensus 183 gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~v 239 (423)
|.+...=+-.||.+|-..-....||.|-.. +.....|..|+...+...|..||..
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~--Te~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTH--TEPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCC--CCcceeCccccCcCCCCcCCCCCCC
Confidence 344444455566666544334567777653 2334567777776666677777765
No 212
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.49 E-value=3.5e+02 Score=28.99 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l 390 (423)
.++..++.+++++..++..+
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 213
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=39.09 E-value=2.1e+02 Score=24.45 Aligned_cols=19 Identities=5% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhccCCc
Q 014500 384 EEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 384 ~~E~~~l~~ln~~L~~~~~ 402 (423)
..+.+.|.+|..+|.+-++
T Consensus 59 ~~~~~~l~~i~~AL~ri~~ 77 (110)
T TIGR02420 59 DRERKLIKKIDEALKRIED 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3456667788888877554
No 214
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=38.85 E-value=38 Score=27.79 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEEA 386 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E 386 (423)
|++.+|...||++++.++.-
T Consensus 14 k~vd~KVdaLq~~V~~l~~~ 33 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESN 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555444443
No 215
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=38.58 E-value=1.4e+02 Score=33.57 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=58.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
...|.|-++|..++-.||..++..| -.|..++|.++.. ...+-...++|.+.++|.+=....||..++.-
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~F-G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr 274 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAF-GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ 274 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4679999999999999999988765 4688999998542 13466788999999999999999999877643
No 216
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.42 E-value=2.4e+02 Score=23.74 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAK 354 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~ 354 (423)
++|++|+.-.+.-+.+++
T Consensus 23 ~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 23 QKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 217
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=38.14 E-value=3.1e+02 Score=24.84 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 014500 325 EAIVDEYNR 333 (423)
Q Consensus 325 e~i~~EY~~ 333 (423)
+.+..+|..
T Consensus 59 ~~~~~e~e~ 67 (164)
T PRK14471 59 QNLQADNER 67 (164)
T ss_pred HHHHHHHHH
Confidence 334444444
No 218
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.77 E-value=2.8e+02 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=21.2
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 358 ESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 358 ~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
+..|...+..++...-+.++++.+.+++|.+.+.
T Consensus 96 ~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 96 EQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQ 129 (472)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666667677766664
No 219
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.47 E-value=2.6e+02 Score=25.07 Aligned_cols=56 Identities=11% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 014500 336 ATQLETQRQYYESLLAEAKSKRE--SLIPETVEKA---VASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~--~~i~~~~~k~---~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
..-|.++|++...+|+.+..+.+ .++++++++. +...+..+..+++....-..-|+
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999987644 3344444332 23344444444444444444444
No 220
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=37.19 E-value=2.4e+02 Score=23.98 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
+..+.+....-|+.+|.+++.++..-+.+
T Consensus 45 ~~~ea~~~~~e~~~~l~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 45 LKEEAEQLLAEYEEKLAEAREEAQEIIEE 73 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888888776655443
No 221
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=37.15 E-value=2.2e+02 Score=25.51 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQR 343 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr 343 (423)
..+.+++|-.||..|+ |.|.||
T Consensus 25 v~~~l~~LEae~q~L~--~kE~~r 46 (126)
T PF09403_consen 25 VESELNQLEAEYQQLE--QKEEAR 46 (126)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHH
Confidence 4677899999999984 555555
No 222
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.93 E-value=2.5e+02 Score=23.45 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 370 ASKMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
+.|.+.+...++.+++....|.+.|..|.
T Consensus 67 ~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 67 SRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666554
No 223
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=36.78 E-value=3.4e+02 Score=24.98 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAKSKR 357 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~~~~ 357 (423)
.+.+..+.-||.+|.+++.++
T Consensus 66 ~eA~~~~~e~e~~l~~a~~ea 86 (173)
T PRK13453 66 LNAQKLEEENKQKLKETQEEV 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555443
No 224
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.43 E-value=2.2e+02 Score=32.82 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAK 354 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~ 354 (423)
..|+.||.-+|.+..+++
T Consensus 518 ~~L~~~~~~~e~~~~~~~ 535 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLE 535 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455544444444433
No 225
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.39 E-value=1.8e+02 Score=28.87 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS-KRESLIPETVEKAVASKMQDIQNELDICEEA 386 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~-~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E 386 (423)
.+|++..+.|-..|+.-.=|-|-.| |+.=+++++ +.+.+.-++..|..-.+..+|..+++.+..+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~-ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEY-EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 4666777777666655433333332 333233322 1122222333444445566666666665544
No 226
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=28 Score=29.81 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=16.8
Q ss_pred EEEEEeCChhhHHHHHhh
Q 014500 109 SVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 109 mvLikF~~q~~AdeF~~~ 126 (423)
+|+|+|+|-+.|.+||+.
T Consensus 55 ~vviEFps~~~ar~~y~S 72 (96)
T COG5470 55 NVVIEFPSLEAARDCYNS 72 (96)
T ss_pred EEEEEcCCHHHHHHHhcC
Confidence 999999999999999873
No 227
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.28 E-value=2.8e+02 Score=30.89 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014500 336 ATQLETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~ 358 (423)
-+|+++-.+.|+.+|++++.+-+
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 47999999999999998887543
No 228
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.04 E-value=1.8e+02 Score=24.45 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014500 346 YESLLAEAKSKR-ESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 346 yE~~l~~~~~~~-~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~ 395 (423)
+...|+.++.+- ..+++.+..+.....+..+..++.+.++|.+.|++=|.
T Consensus 17 cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 17 CRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 455566666543 34566665667777788888888888888888876443
No 229
>PRK11637 AmiB activator; Provisional
Probab=35.94 E-value=3.5e+02 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 370 ASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l 390 (423)
..++.+++.++.+.++++..+
T Consensus 102 ~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 230
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.83 E-value=2.8e+02 Score=33.23 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQ---------RQYYESLLAEAKSKR 357 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Q---------r~yyE~~l~~~~~~~ 357 (423)
-+++...||+.+=..+=+.| ..++|..|..++++.
T Consensus 345 ~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 345 DLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544333333 345666666665543
No 231
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.38 E-value=1.2e+02 Score=33.21 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
.|.+.|..-|..= ..+|=+|.++.+++.....+
T Consensus 409 sRE~LIk~~Y~~R-I~eLt~qlQ~adSKa~~f~~ 441 (518)
T PF10212_consen 409 SREQLIKSYYMSR-IEELTSQLQHADSKAVHFYA 441 (518)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3433344444433 34455555665555554444
No 232
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.26 E-value=17 Score=34.02 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=8.3
Q ss_pred CceeeecccCcc
Q 014500 228 ENLWVCLICGFV 239 (423)
Q Consensus 228 ~~lWiCL~CG~v 239 (423)
++.|.|.+||..
T Consensus 147 e~P~~CPiCga~ 158 (166)
T COG1592 147 EAPEVCPICGAP 158 (166)
T ss_pred CCCCcCCCCCCh
Confidence 567777777763
No 233
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.26 E-value=2.4e+02 Score=32.48 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=8.2
Q ss_pred hccCCcEEEEEeccc
Q 014500 397 TTHFRSVILFFFGGV 411 (423)
Q Consensus 397 L~~~~~~~~~~~~~~ 411 (423)
+.-+|.|.+--+|..
T Consensus 637 ~~~Gd~V~v~~~~~~ 651 (782)
T PRK00409 637 LKVGDEVKYLSLGQK 651 (782)
T ss_pred CCCCCEEEEccCCce
Confidence 455666666554443
No 234
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.99 E-value=1e+02 Score=28.35 Aligned_cols=75 Identities=17% Similarity=0.328 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCCcEEEEEeccccc
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTTHFRSVILFFFGGVGG 413 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~~~~~~~~~~~~~~ 413 (423)
+...|-..++-|+..+.....+ .+ |.+-.....++++++.++++++++.+.++ .+..++.|-.=|=.=-|+.+||
T Consensus 21 ~~~kl~kl~r~Y~~lm~g~~~~---~l-E~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~dmGg 96 (151)
T PF14584_consen 21 LNIKLRKLKRRYDALMRGKDGK---NL-EDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNAFEDMGG 96 (151)
T ss_pred HHHHHHHHHHHHHHHhCCCCcc---cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccCcccccc
Confidence 3344444455555554333222 22 22233445677888888888888888888 6777777766555556888887
No 235
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.81 E-value=1.9e+02 Score=30.29 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 331 YNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 331 Y~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
....|.+|||...+=|...-+++.+
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~ 284 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSE 284 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445677888877777776666554
No 236
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=34.68 E-value=3.5e+02 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014500 336 ATQLETQRQYYESLLAEAKSKRESLI 361 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~~~i 361 (423)
..+.+..+.=||.+|.+++.++..-+
T Consensus 69 ~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 69 LAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444333
No 237
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=34.66 E-value=4.5e+02 Score=25.99 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 014500 327 IVDEYNRLLATQLET-QRQYYESLLAEAKSKRESLI 361 (423)
Q Consensus 327 i~~EY~~lL~sQLe~-Qr~yyE~~l~~~~~~~~~~i 361 (423)
|..-|.. ++.|||. =+.|+-++|.+++.+.+..+
T Consensus 73 i~ev~r~-i~~~le~~lK~Fh~Ell~~LE~k~elD~ 107 (226)
T cd07645 73 ISDVHKK-LNDSLEENFKKFHREIIAELERKTDLDV 107 (226)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 4555554 47788999999998877543
No 238
>PRK10220 hypothetical protein; Provisional
Probab=34.34 E-value=29 Score=30.46 Aligned_cols=12 Identities=17% Similarity=0.772 Sum_probs=10.1
Q ss_pred CceeeecccCcc
Q 014500 228 ENLWVCLICGFV 239 (423)
Q Consensus 228 ~~lWiCL~CG~v 239 (423)
.++|+|..|++-
T Consensus 18 ~~~~vCpeC~hE 29 (111)
T PRK10220 18 NGMYICPECAHE 29 (111)
T ss_pred CCeEECCcccCc
Confidence 469999999985
No 239
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=34.32 E-value=3.6e+02 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 328 VDEYNRLLATQLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 328 ~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~ 356 (423)
..++..++...-+..+.-.+..+...+++
T Consensus 18 ~~e~~~i~~~~~~~~~~~~~~~~~~~~~~ 46 (198)
T PF01991_consen 18 QEEAEKILEEAEEEAEKEIEEIIEKAEKE 46 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556665555555555555555544443
No 240
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.20 E-value=26 Score=37.99 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=25.1
Q ss_pred Ccccccccc---cCCCCCCcCCCCCCCc-eeeecccCcc
Q 014500 205 SCQVCRFCH---QQDERPTCSVCGTVEN-LWVCLICGFV 239 (423)
Q Consensus 205 ~CPvCR~~~---~~~~~~~C~~C~~~~~-lWiCL~CG~v 239 (423)
.||.|-..- .......|..||.... .|.|..||..
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 588887431 2345678999997754 8999999873
No 241
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.95 E-value=20 Score=24.69 Aligned_cols=13 Identities=46% Similarity=1.541 Sum_probs=10.4
Q ss_pred eeeecccCccccc
Q 014500 230 LWVCLICGFVGCG 242 (423)
Q Consensus 230 lWiCL~CG~vgCg 242 (423)
.|+|.+||++.=|
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 6999999998433
No 242
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=33.86 E-value=2e+02 Score=31.22 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec-CCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN-DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~-~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..-|+|=.+|..+.=.||.-+++ .+-.|-++|+.++ +.-.||--+-+.|.+.+.|.+=-+.+|+.-|.+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfE-kiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFE-KIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHH-hccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 46888999999999999999988875 3458999999986 333678889999999999999888888887765
No 243
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.83 E-value=4.2e+02 Score=25.33 Aligned_cols=14 Identities=0% Similarity=0.145 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 014500 325 EAIVDEYNRLLATQ 338 (423)
Q Consensus 325 e~i~~EY~~lL~sQ 338 (423)
+.+..+|...|..-
T Consensus 99 ~~~l~e~e~~L~~A 112 (205)
T PRK06231 99 QQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544433
No 244
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=33.54 E-value=1.8e+02 Score=25.90 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=8.9
Q ss_pred EEEeccccceeee
Q 014500 405 LFFFGGVGGCYLM 417 (423)
Q Consensus 405 ~~~~~~~~~~~~~ 417 (423)
+.|..|||..|=+
T Consensus 64 vv~ltGvG~l~P~ 76 (126)
T PF08747_consen 64 VVFLTGVGSLFPF 76 (126)
T ss_pred EEEEeCcchhcch
Confidence 3456788888744
No 245
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.49 E-value=3.8e+02 Score=25.61 Aligned_cols=21 Identities=5% Similarity=-0.050 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014500 339 LETQRQYYESLLAEAKSKRES 359 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~ 359 (423)
.+....=|+.+|.++++++..
T Consensus 98 A~~~l~e~e~~L~~A~~eA~~ 118 (205)
T PRK06231 98 AQQLLENAKQRHENALAQAKE 118 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666655554443
No 246
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.41 E-value=29 Score=30.41 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=10.1
Q ss_pred CceeeecccCcc
Q 014500 228 ENLWVCLICGFV 239 (423)
Q Consensus 228 ~~lWiCL~CG~v 239 (423)
.++|+|..||+.
T Consensus 17 g~~~iCpeC~~E 28 (109)
T TIGR00686 17 GTQLICPSCLYE 28 (109)
T ss_pred CCeeECcccccc
Confidence 479999999985
No 247
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.41 E-value=3.8e+02 Score=30.94 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLA 351 (423)
Q Consensus 338 QLe~Qr~yyE~~l~ 351 (423)
.||.||.-+|.+.+
T Consensus 524 ~l~~~~~~~e~~~~ 537 (782)
T PRK00409 524 SLEELERELEQKAE 537 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 248
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.39 E-value=1.3e+02 Score=29.33 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhccCCc
Q 014500 381 DICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 381 ~~~~~E~~~l~~ln~~L~~~~~ 402 (423)
.|.++|++||++-|.-|...=+
T Consensus 231 kk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 231 KKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3667899999999988865433
No 249
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=33.38 E-value=1e+02 Score=35.17 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=53.0
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
++|.+-.||-..|+.|++.|+..+.-+=-.|++-++| ++| .-=..+.|.+++.|..=....++++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~p-TGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVP-TGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCc-ccceeEeecCHHHHHhhhhccccCccc
Confidence 5899999999999999999999887666677777755 343 223456899999999888888888754
No 250
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.36 E-value=1.6e+02 Score=25.24 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKSKRESLIPETVE-----KAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~~i~~~~~-----k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
|+..-.-|..-|.+.+++..+.+..+.+ ......+.+|...+..+..+++.+.
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544433332211 1233455566666666666666555
No 251
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=33.04 E-value=3.9e+02 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 014500 336 ATQLETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~~~ 360 (423)
..+.+....=|+.+|.+++.++...
T Consensus 65 ~~eA~~~~~e~e~~L~~a~~ea~~i 89 (175)
T PRK14472 65 KDEAEAILRKNRELLAKADAEADKI 89 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544433
No 252
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=33.02 E-value=4.5e+02 Score=25.20 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLAT 337 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~s 337 (423)
..+.+.+..+|...|..
T Consensus 100 k~eAe~~~~~ye~~L~~ 116 (204)
T PRK09174 100 KQEADAAVAAYEQELAQ 116 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566778888776543
No 253
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=32.91 E-value=3.8e+02 Score=25.84 Aligned_cols=32 Identities=6% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014500 370 ASKMQDIQNELDICEEAKKAVADVNPLTTHFR 401 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~ 401 (423)
.+||..|+.|.+.+.+|-..||+|...|.+..
T Consensus 114 ~~KL~eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 114 QQKLKELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 57999999999999999999999999999887
No 254
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.79 E-value=2.4e+02 Score=25.86 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEE
Q 014500 339 LETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFF 407 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~ 407 (423)
|..|-++|++.++.+.++ -..+.....+++.+++-...++..+. ++++|+..
T Consensus 11 l~a~lq~l~~qie~L~~~-------------i~~l~~~~~e~~~~~~tl~~lk~~~~----g~E~LVpv 62 (145)
T COG1730 11 LAAQLQILQSQIESLQAQ-------------IAALNAAISELQTAIETLENLKGAGE----GKEVLVPV 62 (145)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhcCC----CceEEEEc
Confidence 334444446666655543 12344455566666666666665553 44666543
No 255
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=32.79 E-value=1.4e+02 Score=33.49 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=56.9
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..++-.+|..++..+- .|..++|+++..+ .++-...+.|.+.+.|+.=...+||+.+..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG-~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFG-PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccC-CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 35689999999999999999987754 6888999885321 245579999999999999999999988864
No 256
>PRK06746 peptide chain release factor 2; Provisional
Probab=32.71 E-value=5.3e+02 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
.+...+++|+.++++++-+. =+..-. -...++|-+-+|+||-
T Consensus 58 ~a~~e~~~l~~~l~~le~~~----l~~~~~-D~~~~~leI~aG~GG~ 99 (326)
T PRK06746 58 ELESEVKGLIQEMNEYELQL----LLSDPY-DKNNAILELHPGAGGT 99 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccCCCC-ccCCeEEEEECCCCcH
Confidence 34455566666666654210 011111 2357899999999994
No 257
>PTZ00464 SNF-7-like protein; Provisional
Probab=32.65 E-value=4.7e+02 Score=25.35 Aligned_cols=28 Identities=4% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 014500 373 MQDIQNELDICEEAKKAVADVNPLTTHF 400 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~~ln~~L~~~ 400 (423)
++++..-.|...+.+..-++|++.|...
T Consensus 123 id~Vd~l~Dei~E~~e~~~EI~e~Ls~~ 150 (211)
T PTZ00464 123 VDKVEDLQDELADLYEDTQEIQEIMGRA 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444555556666666667888888763
No 258
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=32.65 E-value=5e+02 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 014500 330 EYNRLLATQLETQ-RQYYESLLAEAKSKRESLI 361 (423)
Q Consensus 330 EY~~lL~sQLe~Q-r~yyE~~l~~~~~~~~~~i 361 (423)
++-.=+..|||.+ +.|+.++|..++.+.+..+
T Consensus 77 ~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~ 109 (232)
T cd07646 77 EVHRQIQNQLEEMLKSFHNELLTQLEQKVELDS 109 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667666 5688888999998776443
No 259
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=32.59 E-value=3.7e+02 Score=26.25 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 014500 344 QYYESLLAEAKSK 356 (423)
Q Consensus 344 ~yyE~~l~~~~~~ 356 (423)
.+++++|..++.+
T Consensus 90 ~~~~~li~pLe~k 102 (223)
T cd07605 90 AFHGELILPLEKK 102 (223)
T ss_pred HHHHHHHHHhhhh
Confidence 3445555555544
No 260
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=32.37 E-value=2.7e+02 Score=23.44 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014500 371 SKMQDIQNELDICEEAKKAVADVNPLTTH 399 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~~ln~~L~~ 399 (423)
.++..+..++.+..++.+.+.+.|..|.+
T Consensus 84 ~~l~~~~~~l~~~~~~~~~~n~~N~~ll~ 112 (143)
T PF05130_consen 84 EELQALWRELRELLEELQELNERNQQLLE 112 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777778888888877766643
No 261
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=32.35 E-value=21 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.5
Q ss_pred eeecCCCccchhhhhcccccCcccccccc
Q 014500 185 LSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 185 ~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
..++|+|.-+..|-.-|..+.||.|-...
T Consensus 21 ~~~pCgH~I~~~~f~~~rYngCPfC~~~~ 49 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERYNGCPFCGTPF 49 (55)
T ss_pred ccccccceeeccccChhhccCCCCCCCcc
Confidence 46799999998887777778899997643
No 262
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=32.11 E-value=3.5e+02 Score=23.67 Aligned_cols=79 Identities=9% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccHHHHHHHHHHHHHHHH----HH
Q 014500 318 ALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAK--------------SKRESLIPETVEKAVASKMQDIQ----NE 379 (423)
Q Consensus 318 ~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~--------------~~~~~~i~~~~~k~~~~k~~~lq----~k 379 (423)
+...+|.+.+..+.-.==..--+.-|.+.++++.+++ .....++.++++..|..-++.|- ..
T Consensus 18 a~~~ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~e 97 (118)
T TIGR01837 18 ARVQEEGSKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREE 97 (118)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHH
Q ss_pred HHHHHHHHHHHH-HHhhh
Q 014500 380 LDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 380 l~~~~~E~~~l~-~ln~~ 396 (423)
++.+.+.+..|. +|+++
T Consensus 98 v~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 98 IEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
No 263
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.10 E-value=3.7e+02 Score=32.60 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQ--LETQRQYYESLLAEAKS 355 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQ--Le~Qr~yyE~~l~~~~~ 355 (423)
++.+..+...|..++..+ +|+|+.=++..+.+++.
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~ 820 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELEN 820 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 456666777888887765 67777777777666554
No 264
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.05 E-value=4.7e+02 Score=26.12 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKS 355 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~ 355 (423)
|+.|..=|++.+..+.+
T Consensus 234 le~~~~~~ee~~~~L~e 250 (297)
T PF02841_consen 234 LEQQERSYEEHIKQLKE 250 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555443
No 265
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.99 E-value=29 Score=39.00 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=8.5
Q ss_pred CcCCCCCC--CceeeecccCc
Q 014500 220 TCSVCGTV--ENLWVCLICGF 238 (423)
Q Consensus 220 ~C~~C~~~--~~lWiCL~CG~ 238 (423)
.|..||.. .+...|..||.
T Consensus 29 ~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 29 PCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred cCCCCCCCCCcccccccccCC
Confidence 35555433 23344555544
No 266
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=31.94 E-value=29 Score=23.58 Aligned_cols=20 Identities=45% Similarity=1.172 Sum_probs=10.6
Q ss_pred CCcCCCCCC-----CceeeecccCc
Q 014500 219 PTCSVCGTV-----ENLWVCLICGF 238 (423)
Q Consensus 219 ~~C~~C~~~-----~~lWiCL~CG~ 238 (423)
++|..|+.. ..+++|..||+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGH 27 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTE
T ss_pred CCCCCCCCcceeccCCEEeCCcccc
Confidence 345555543 46889999986
No 267
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=31.90 E-value=62 Score=32.26 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAK 354 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~ 354 (423)
|=+|+.|.|||-+|.+.+
T Consensus 10 svi~~ErIY~e~~l~~~~ 27 (249)
T PF10422_consen 10 SVIESERIYYEYQLNRAH 27 (249)
T ss_dssp HHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhccchhh
Confidence 458999999999775433
No 268
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=31.89 E-value=3.9e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
.+..+.+..||...|..--+.-+...++--.++++..+..+.+
T Consensus 69 ~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~ 111 (156)
T CHL00118 69 LAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQ 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888877666665555555555544444333333
No 269
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.68 E-value=3.4e+02 Score=26.94 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRL 334 (423)
Q Consensus 321 ~~K~e~i~~EY~~l 334 (423)
+++++++..|+..|
T Consensus 44 ~~~~~~~~~e~e~l 57 (239)
T COG1579 44 NKALEALEIELEDL 57 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555544
No 270
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.66 E-value=2.6e+02 Score=32.00 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=8.4
Q ss_pred ccEEEEEecCCCC
Q 014500 65 STCIFVVAVPNYL 77 (423)
Q Consensus 65 ~~~lcilaVP~~m 77 (423)
+.++|+.++|.-+
T Consensus 288 c~i~~l~~~p~~~ 300 (717)
T PF10168_consen 288 CSILCLPSLPPVL 300 (717)
T ss_pred eeEEEecCCCCEE
Confidence 4667777776554
No 271
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.64 E-value=3.1e+02 Score=24.49 Aligned_cols=25 Identities=8% Similarity=0.278 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
+++..++..++.++...++|.+.++
T Consensus 97 ~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 97 RQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 272
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=31.61 E-value=3.3e+02 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEecccccee
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGCY 415 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~~ 415 (423)
+.+...+..+..++++.+.+.+.+-=++.-.. ...++|-+-.|.||--
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D-~~~~~leI~aG~GG~E 125 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPKDPND-EKNVILEIRAGTGGDE 125 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-CCCeEEEEECCCCcHH
Confidence 34445556666666666655443322222333 3568999999999953
No 273
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.52 E-value=2.4e+02 Score=24.73 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK-------RESLIPETVEKAV---ASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~-------~~~~i~~~~~k~~---~~k~~~lq~kl~~~~~E~~~ 389 (423)
..+|+..+..|...==.=-.|+=|+|-.+++.+++.+ ..++|.+++.+.. .+-++.+..+++.++++...
T Consensus 22 ~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 22 TAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVAD 101 (108)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Confidence 3455555555443221223455666777777766632 2233444433321 23345555555555555555
Q ss_pred HH
Q 014500 390 VA 391 (423)
Q Consensus 390 l~ 391 (423)
|+
T Consensus 102 Le 103 (108)
T COG3937 102 LE 103 (108)
T ss_pred HH
Confidence 54
No 274
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.50 E-value=1.7e+02 Score=29.25 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~ 356 (423)
+.+|+.++..+|.+| .+.-.|||+++++-++.
T Consensus 178 a~eki~~Lr~~y~~l-----~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 178 AREKIAALRQRYNQL-----SNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 579999999999987 55667888888776664
No 275
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=31.48 E-value=4.5e+02 Score=25.53 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~ 389 (423)
-.++-..||..+|..-+||=|.-|-...++.. .++..|.+-++|- .+-+.++++++-+-..|.++
T Consensus 100 E~~~~~~e~~e~l~km~EslRi~~~~e~~k~~-~Re~~iak~m~K~-pq~~a~~~a~~~k~e~~a~a 164 (225)
T KOG4848|consen 100 EFNNAKKEYKELLKKMRESLRILYTKEPEKFT-FREAEIAKNMKKY-PQTLAKYEASLVKQEQEADA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHh-HHHHHHHHHHHHHhHHHhhH
Confidence 45777889999999999999988877666655 3345566554543 34455566666555555444
No 276
>PRK11637 AmiB activator; Provisional
Probab=31.37 E-value=2.7e+02 Score=29.35 Aligned_cols=27 Identities=4% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
...+++.++++++++.+++..++ +|++
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554 4443
No 277
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=31.36 E-value=2.5e+02 Score=28.16 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRES--LIPETVEKAVASKMQDIQNELDIC 383 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~--~i~~~~~k~~~~k~~~lq~kl~~~ 383 (423)
++..|.|..|=+.||..+ |.| +..+-++|+++ .+.|| ||...-..-..|+|+-..
T Consensus 180 RrN~E~ME~EkTKlLiA~-ekQ------kVvEKeAETerkkAviEA-EK~AqVa~I~~qqkl~EK 236 (322)
T KOG2962|consen 180 RRNFELMEAEKTKLLIAA-EKQ------KVVEKEAETERKKAVIEA-EKNAQVAKILMQQKLMEK 236 (322)
T ss_pred HHhHHHHHHHhhhhHHHH-HHH------HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHhhhh
Confidence 556677777888887765 333 33343444333 35555 554333333344444433
No 278
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=31.32 E-value=35 Score=35.22 Aligned_cols=46 Identities=33% Similarity=0.605 Sum_probs=31.9
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
-|.||+|-+.++...+-.+..+|++.-+..|+..-. +.+||.||..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCc
Confidence 489999999997765545555666665555555432 5789999964
No 279
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=31.23 E-value=35 Score=24.68 Aligned_cols=37 Identities=24% Similarity=0.592 Sum_probs=18.2
Q ss_pred CcccccccCCCCCcce--eecCCCccchhhhhc-ccc---cCcccc
Q 014500 170 CPICLERLDPDTSGIL--STICDHSFQCSCTAK-WTV---LSCQVC 209 (423)
Q Consensus 170 CpICLE~ld~~~~gi~--t~~C~H~Fh~~Cl~k-W~~---~~CPvC 209 (423)
|.+|-+..-. |+. +..|+-.+|..|+.+ |.. ..||.|
T Consensus 1 C~~C~~iv~~---G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---GQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---SEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHee---eccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5566666544 343 235888999999999 442 358887
No 280
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=31.13 E-value=1.6e+02 Score=28.81 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014500 350 LAEAKSK 356 (423)
Q Consensus 350 l~~~~~~ 356 (423)
|.+++.+
T Consensus 46 l~~Ar~e 52 (255)
T TIGR03825 46 LEKAEAE 52 (255)
T ss_pred HHHHHHH
Confidence 3333333
No 281
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.11 E-value=1.9e+02 Score=34.05 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 333 RLLATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 333 ~lL~sQLe~Qr~yyE~~l~~~~~~~~~~--i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
.|..++|.+=..=|+.+++.++++-++- .-...+|.....|+.||.+++.++.|+.-|| .+|..-
T Consensus 986 dmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~ 1053 (1243)
T KOG0971|consen 986 DLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQS 1053 (1243)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcc
Confidence 3566667666666677776666543321 1123356778899999999999999999999 676533
No 282
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=31.10 E-value=4.5e+02 Score=24.63 Aligned_cols=38 Identities=11% Similarity=0.272 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~ 358 (423)
.++++.+..+|..|-..-=+.--.=|++++.++++.-.
T Consensus 27 KK~Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK 64 (160)
T PF03978_consen 27 KKEINSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLK 64 (160)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45577888877777433333333336777777776543
No 283
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.80 E-value=3.3e+02 Score=26.53 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhccCC
Q 014500 385 EAKKAVADVNPLTTHFR 401 (423)
Q Consensus 385 ~E~~~l~~ln~~L~~~~ 401 (423)
+-.+.|..|...|...+
T Consensus 128 eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 128 ERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 33445566666666553
No 284
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=30.72 E-value=4e+02 Score=23.91 Aligned_cols=54 Identities=28% Similarity=0.388 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 326 AIVDEYNRLLATQLETQRQYYESLLAEAKSKRES--LIPETVEKAVASKMQDIQNELDICE 384 (423)
Q Consensus 326 ~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~--~i~~~~~k~~~~k~~~lq~kl~~~~ 384 (423)
++..|-..+++.|++. +++|.++.++-.. ...+.+|-.+..=+++|.+++++|.
T Consensus 3 ~~~kEi~~l~~~lk~~-----~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCe 58 (121)
T PF03310_consen 3 TIIKEISELIQELKKI-----ESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCE 58 (121)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhch
Confidence 4555666666666554 5556555443221 1223434333344566788888773
No 285
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=30.56 E-value=3.4e+02 Score=23.06 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPET 364 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~ 364 (423)
..+.+.+..+|...|..--..-+...++...++++..+..+.++
T Consensus 46 ~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea 89 (132)
T PF00430_consen 46 KEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEA 89 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888887665444433444444444444433333333
No 286
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=24 Score=36.47 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=30.5
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRF 211 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~ 211 (423)
...||||+-.-..+. ++ ..-|=.||..|+-+.. ...|||--+
T Consensus 300 ~~~CpvClk~r~Npt--vl-~vSGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPT--VL-EVSGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred cccChhHHhccCCCc--eE-EecceEEeHHHHHHHHHhcCCCCccCC
Confidence 448999999776542 22 2347789999998865 567998766
No 287
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=30.51 E-value=2.9e+02 Score=25.24 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
...+.+..+.=||.+|.+++.++..-+.++.+++- +..+..+++..+|...+.+
T Consensus 56 ~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~----~~~~~~~~~A~~ea~~~~~ 109 (167)
T PRK14475 56 LREEAQALLADVKAEREEAERQAAAMLAAAKADAR----RMEAEAKEKLEEQIKRRAE 109 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
No 288
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.40 E-value=2.5e+02 Score=28.37 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 349 LLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 349 ~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
+|.+++.+ ++...+++|.-.++.+.||.|.....+++..|+
T Consensus 254 qisnLKad--~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 254 QISNLKAD--KEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred hhhccCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 223356677888899999999999999988886
No 289
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=30.36 E-value=4.8e+02 Score=27.91 Aligned_cols=77 Identities=12% Similarity=0.248 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhccHHHH--HHH-------HHHHHHHHHHH---HHHHHHHHHHH
Q 014500 329 DEYNRLLATQLETQRQ------YYESLLAEAKSKRESLIPETV--EKA-------VASKMQDIQNE---LDICEEAKKAV 390 (423)
Q Consensus 329 ~EY~~lL~sQLe~Qr~------yyE~~l~~~~~~~~~~i~~~~--~k~-------~~~k~~~lq~k---l~~~~~E~~~l 390 (423)
.-|..+++.+-+.+|. |-++.+.+++.++++.+.+|. .++ -.+++.+++.. --...++.-.|
T Consensus 249 ~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~RlYl 328 (419)
T PRK10930 249 AAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYI 328 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 3355555555444432 334445555555555444221 110 12244444433 33567788889
Q ss_pred HHHhhhhccCCcEEE
Q 014500 391 ADVNPLTTHFRSVIL 405 (423)
Q Consensus 391 ~~ln~~L~~~~~~~~ 405 (423)
+-|++.|.+.+.||+
T Consensus 329 etme~vl~~~~kviv 343 (419)
T PRK10930 329 ETMEKVLGHTRKVLV 343 (419)
T ss_pred HHHHHHHccCCEEEE
Confidence 999999999888776
No 290
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=4.2e+02 Score=28.99 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH------HHHHHHH--HHHHHHHHHHhhhhccCCc
Q 014500 341 TQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDI------QNELDIC--EEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 341 ~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~l------q~kl~~~--~~E~~~l~~ln~~L~~~~~ 402 (423)
+--+.||...++++.+..+.+.|+..|.+...-|.- |.+|.+. +.|..+-+.+|+-|++.++
T Consensus 114 ~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e~e~qr~~n~ElvrmQE 183 (630)
T KOG0742|consen 114 AKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARKRYEDELEAQRRLNEELVRMQE 183 (630)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 344567777777777777666666444433222221 2233222 3333344456666665543
No 291
>PRK11032 hypothetical protein; Provisional
Probab=30.28 E-value=1.7e+02 Score=27.34 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 014500 342 QRQYYESLLAEAKS 355 (423)
Q Consensus 342 Qr~yyE~~l~~~~~ 355 (423)
+..+|+.+|+++.+
T Consensus 4 ~~~~Y~~ll~~v~~ 17 (160)
T PRK11032 4 VAQYYRELVASLTE 17 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777765
No 292
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.26 E-value=2.3e+02 Score=29.29 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.-+++|.+-+.|++.|.+.+.
T Consensus 335 aplvkIkqavsKLk~et~~mn 355 (384)
T KOG0972|consen 335 APLVKIKQAVSKLKEETQTMN 355 (384)
T ss_pred chHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888765
No 293
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.26 E-value=1.8e+02 Score=28.08 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhhh
Q 014500 385 EAKKAVADVNPLT 397 (423)
Q Consensus 385 ~E~~~l~~ln~~L 397 (423)
.|+..||++|+.|
T Consensus 55 ~EIR~LKe~NqkL 67 (195)
T PF10226_consen 55 NEIRGLKEVNQKL 67 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 294
>PF15463 ECM11: Extracellular mutant protein 11
Probab=30.21 E-value=4e+02 Score=23.82 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEE 385 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~ 385 (423)
.+|..+-..|..||+++++
T Consensus 115 eav~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 115 EAVRAQGEQLDRKLEKMKE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666554
No 295
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.20 E-value=41 Score=35.36 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=54.6
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC--CCCceE-EEEEeCChhhHHHHHhhhCCCcC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYS-VLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~--~p~~ym-vLikF~~q~~AdeF~~~~ng~~F 132 (423)
|.|--.|.+||-.+++.-+.|+.+++.--.+...+. -++.|. +-|.|..+.+..+|...|+|-.|
T Consensus 10 vv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 10 VVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 556778999999999999999988888888885331 245564 88999999999999999999988
No 296
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.94 E-value=1.7e+02 Score=31.11 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHH----------HHHHHHHHHHHHHHH
Q 014500 313 SGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE---SLIPET----------VEKAVASKMQDIQNE 379 (423)
Q Consensus 313 ~~~~~~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~---~~i~~~----------~~k~~~~k~~~lq~k 379 (423)
+.....+.|.=++.+..++...-.++..+-+.|++..+.+++++.+ .++.+- .......++..++++
T Consensus 133 P~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~ 212 (498)
T TIGR03007 133 PELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEE 212 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHH
Confidence 3333334444334444444444556667778888888887776422 222211 112345677777778
Q ss_pred HHHHHHHHHHHH
Q 014500 380 LDICEEAKKAVA 391 (423)
Q Consensus 380 l~~~~~E~~~l~ 391 (423)
+...+.+...++
T Consensus 213 l~~~~~~l~~~~ 224 (498)
T TIGR03007 213 LEAARLELNEAI 224 (498)
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 297
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=2e+02 Score=25.66 Aligned_cols=28 Identities=4% Similarity=0.201 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 370 ASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
..++..|+..-++..++.+.|+ .|+..|
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554 455444
No 298
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=29.81 E-value=20 Score=35.31 Aligned_cols=47 Identities=28% Similarity=0.681 Sum_probs=33.8
Q ss_pred CCCCcccccccCCCCCcceeecCC-----Cccchhhhhcccc----cCcccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWTV----LSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~-----H~Fh~~Cl~kW~~----~~CPvCR~~~ 213 (423)
.+.|-||.+.........+..+|. +..|..|+.+|.. ..|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 578999999876543224556673 3359999999974 6788888754
No 299
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.43 E-value=3.8e+02 Score=23.33 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
+..+.+....=||.+|.+++.++...+.+
T Consensus 51 ~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 51 RLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777776665544443
No 300
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.30 E-value=5.8e+02 Score=26.57 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
..++.|+-..|+..-|...=|+-|+-|-.++.+-++
T Consensus 320 ~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~ 355 (406)
T KOG3859|consen 320 LQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEA 355 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888877766554
No 301
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.98 E-value=2.5e+02 Score=29.13 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSKRESLIPETV-----EKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~--sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~-----~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
++|.+.+..+|..++. ..|...|.+|..+..++..+-...+.... ..++-..-..|+.++..+.+|+.-++
T Consensus 139 ~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 139 REQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888887774 56778999999999999887543322210 12344455566777777777776665
No 302
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=28.88 E-value=1.8e+02 Score=27.00 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014500 332 NRLLATQLETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 332 ~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~ 360 (423)
-.+|+.|||--+.-||.-+..++.+..++
T Consensus 40 ieiL~kQl~rek~afe~a~~~vk~k~~~E 68 (153)
T PF15175_consen 40 IEILSKQLEREKLAFEKALGSVKSKVLQE 68 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999988875544
No 303
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.74 E-value=2.5e+02 Score=24.16 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhhhhccCCcEEEEEec
Q 014500 370 ASKMQDIQNELDICEEAKKAVAD---VNPLTTHFRSVILFFFG 409 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~~---ln~~L~~~~~~~~~~~~ 409 (423)
..+.+.|+.++++++.....+++ -+-.|++.+|++..|..
T Consensus 47 ~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~ 89 (105)
T PRK00888 47 KARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVP 89 (105)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCC
Confidence 34445555555555554445543 35678999999887643
No 304
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=28.69 E-value=6e+02 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
+.+...+.+|..++++.+.+ .| +..-. ...+++|-+-.|+||-
T Consensus 95 ~~a~~e~~~l~~~l~~le~~--~l--l~~~~-D~~~~~leI~aG~GG~ 137 (364)
T TIGR00020 95 NELDAELKALEKKLAELELR--TM--LSGEY-DANNAYLTIQAGAGGT 137 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hc--cCCCC-ccCCeeEEEECCCCcH
Confidence 33445556666666665532 11 22222 2456889999999994
No 305
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.67 E-value=3.6e+02 Score=27.36 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~ 391 (423)
--+.++.++|+...+...||+
T Consensus 133 ~sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 306
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.46 E-value=3.3e+02 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLAEAKSKR 357 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~~~~ 357 (423)
+++.+++=||.+.++++++.
T Consensus 540 e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554433
No 307
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.37 E-value=2e+02 Score=24.24 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
+..++.++..+++...++++.++ +|.+
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554 4443
No 308
>KOG4330 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.20 E-value=84 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=21.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 317 GALFNSKVEAIVDEYNRLLATQLETQRQYY 346 (423)
Q Consensus 317 ~~~~~~K~e~i~~EY~~lL~sQLe~Qr~yy 346 (423)
|.+..+..+.|..||..+|+..|.+|-.=|
T Consensus 156 ErllKerE~klReeyE~vLttKLaEQydaf 185 (206)
T KOG4330|consen 156 ERLLKEREIKLREEYEMVLTTKLAEQYDAF 185 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667788888888888888886544
No 309
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=42 Score=37.85 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=30.6
Q ss_pred CceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCC
Q 014500 228 ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRT 266 (423)
Q Consensus 228 ~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t 266 (423)
..+++||.|=...+ ..|...|+..|+|...+.++.
T Consensus 38 ~glyicl~~f~afg----~~~v~~~f~~tg~~~yl~i~r 72 (763)
T KOG0944|consen 38 GGLYICLNCFLAFG----REHVEEYFRKTGHSVYLHIAR 72 (763)
T ss_pred CCEEeehhhhhhhh----hHHHHHHHhhcCceEEEEecc
Confidence 57999999988777 689999999999999888764
No 310
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=28.03 E-value=64 Score=31.18 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014500 372 KMQDIQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~ln~ 395 (423)
.+..++..+.++++|...|++|.+
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 311
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.00 E-value=89 Score=29.76 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 361 IPETVEKAVASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
+.|| ++.+.+++..+++.++.++++.+||+ +|+
T Consensus 126 leEA-eaLLkknl~sa~k~l~~~~~DldfLrdQvT 159 (187)
T KOG3313|consen 126 LEEA-EALLKKNLTSAVKSLDVLEEDLDFLRDQVT 159 (187)
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHhhce
Confidence 5566 77889999999999999999999998 554
No 312
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.92 E-value=4.6e+02 Score=23.71 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLA 336 (423)
Q Consensus 324 ~e~i~~EY~~lL~ 336 (423)
.+.+..+|...|.
T Consensus 58 a~~~~~e~e~~l~ 70 (164)
T PRK14473 58 LANAKRDYEAELA 70 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445544443
No 313
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.80 E-value=2.1e+02 Score=22.28 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAV 390 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l 390 (423)
++.|..|++.+..+++.|
T Consensus 12 Vq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 314
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.80 E-value=1.4e+02 Score=30.51 Aligned_cols=26 Identities=4% Similarity=0.221 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
..+.+.++|..+.+.+++|++-||++
T Consensus 259 ~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 259 GLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888999999999999864
No 315
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=27.73 E-value=1.3e+02 Score=33.45 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=48.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 318 ALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRES-LIPETVE-KAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 318 ~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~-~i~~~~~-k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
+++..++|.....-++..++-.+.|-+|+|.+-..-+++.+. +.++..+ |.-+.|-+.-|.++....+|++.+.
T Consensus 407 ~iA~~R~es~k~~~ry~~~sDvr~QLrflEqldk~E~Erk~~~ere~l~raks~~nkeD~eq~r~kakake~qa~~ 482 (563)
T KOG2341|consen 407 AIAEHRVESEKSRERYEIISDVRRQLRFLEQLDKAEEERKESREREELLRAKSRSNKEDPEQLRMKAKAKEMQAAE 482 (563)
T ss_pred HHHHHHHHHhhccchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccChHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999998765443333221 1111111 3334566666777777777777664
No 316
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.72 E-value=3.2e+02 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
+...+++.+||+.++.+..+++... +||-+
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544433 44433
No 317
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=27.62 E-value=1.9e+02 Score=34.17 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKSKRES-----LIPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~-----~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
|+.|+...+..+++++++... +..+++.++-..|+++++.++.++++.++.|++
T Consensus 934 L~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 934 LEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777665321 233444445567888888888888887777764
No 318
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=27.57 E-value=3.7e+02 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
.+.+...+..+..++++++.+. .| ..- .-...++|-+-+|.||-
T Consensus 94 ~~~a~~e~~~l~~~l~~le~~~-ll---~~~-~D~~~~~leI~aG~GG~ 137 (367)
T PRK00578 94 LAEAEAELKALEKKLAALELER-LL---SGE-YDANNAILTIHAGAGGT 137 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hc---CCC-cccCCeEEEEecCCCcH
Confidence 3444555666777776665331 12 111 12457899999999995
No 319
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=27.46 E-value=59 Score=28.11 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=29.4
Q ss_pred CCCCCCcCCCCCCCceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEc
Q 014500 215 QDERPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDY 272 (423)
Q Consensus 215 ~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY 272 (423)
.++...|.+|+.....|+++.=|..-| ...+--|-.-..|---+..-+.+-|.-
T Consensus 10 ~~~N~~CaDCg~~~p~w~s~~~GiflC----~~Cag~HR~lg~~is~VkSi~~d~w~~ 63 (116)
T PF01412_consen 10 KPGNKVCADCGAPNPTWASLNYGIFLC----LECAGIHRSLGVHISRVKSITMDNWSP 63 (116)
T ss_dssp STTCTB-TTT-SBS--EEETTTTEEE-----HHHHHHHHHHTTTT--EEETTTS---H
T ss_pred CcCcCcCCCCCCCCCCEEEeecChhhh----HHHHHHHHHhcccchhccccccCCCCH
Confidence 466788999999999999988777777 567777755444443333333333543
No 320
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.46 E-value=4.2e+02 Score=23.97 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICE 384 (423)
Q Consensus 371 ~k~~~lq~kl~~~~ 384 (423)
.|++.|...|+...
T Consensus 80 rriq~LEeele~ae 93 (143)
T PF12718_consen 80 RRIQLLEEELEEAE 93 (143)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444433
No 321
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=27.42 E-value=3.2e+02 Score=25.22 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=52.3
Q ss_pred cccccccceeeecCcccccccCCCCceeeeeeEEEEccCC----CCCcCCCCCCCccEEEEEecCCCCCHHHHHHHhccc
Q 014500 14 PITIEEAGFCTVSSTATRSRANPNPKFSERRGLVHLFRGT----SQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSH 89 (423)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~f~sgnp~v~~~~G~vhl~r~~----~~~~~~~~~~~~~~lcilaVP~~ms~~d~l~F~~~~ 89 (423)
|.-.++.-||...-.+--.-+.|-=.|++..|-+|+.-+. ...+.|...|+=.+-....+|.|.
T Consensus 49 P~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~t------------ 116 (153)
T KOG4680|consen 49 PPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYT------------ 116 (153)
T ss_pred CCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcC------------
Confidence 4444555577777666666777888899999999998764 334455555554555555566553
Q ss_pred ccceeEEEEeecCCCCCceEEEEEeCCh
Q 014500 90 IDHVEELIFIRNDAMEDRYSVLIKLVDQ 117 (423)
Q Consensus 90 ~~~I~~iriir~~~~p~~ymvLikF~~q 117 (423)
.|.+|.++++-.|.
T Consensus 117 --------------PPG~Y~lkm~~~d~ 130 (153)
T KOG4680|consen 117 --------------PPGSYVLKMTAYDA 130 (153)
T ss_pred --------------CCceEEEEEEeecC
Confidence 47789988887443
No 322
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.42 E-value=4.4e+02 Score=23.61 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 334 LLATQLETQRQYYESLLAEAKS---KRESLIPETVEKAVASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~---~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~ 389 (423)
-+..+|.+|+.-|.++-+...+ .....+-...=+.+-.+++++..+|++-.++.+.
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~ 114 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQ 114 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888776655554 2222222222345568888888888877766653
No 323
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.35 E-value=83 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 340 ETQRQYYESLLAEAKSK 356 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~ 356 (423)
-.||+=||+..+++..+
T Consensus 65 ~~Q~k~Ye~a~~~~~~~ 81 (104)
T PF11460_consen 65 MQQRKDYEEAVDQLTNE 81 (104)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 36888888877666554
No 324
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=27.27 E-value=2.3e+02 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=35.7
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~ 130 (423)
.+|.|-+++..+|..||...+..+- .|..|-+.+.+ . ...|+|.+.+.|..+...+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g-~V~yVD~~~G~--~---~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG-EVAYVDFSRGD--T---EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS---EEEEE--TT---S---EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC-CcceEEecCCC--C---EEEEEECCcchHHHHHHHHHhc
Confidence 4678888999999999999998654 66666666633 3 7899999999999988766554
No 325
>COG1773 Rubredoxin [Energy production and conversion]
Probab=27.08 E-value=52 Score=25.52 Aligned_cols=34 Identities=29% Similarity=0.890 Sum_probs=23.8
Q ss_pred CcccccccccCC-CCCCcCCCCCC-----CceeeecccCc
Q 014500 205 SCQVCRFCHQQD-ERPTCSVCGTV-----ENLWVCLICGF 238 (423)
Q Consensus 205 ~CPvCR~~~~~~-~~~~C~~C~~~-----~~lWiCL~CG~ 238 (423)
.|.+|-+...+. ....|..|..+ ..-|.|..||.
T Consensus 5 ~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 5 RCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred EecCCceEeccccCCccCCCCCCCchhhCCCccCCCCCCC
Confidence 588888876443 34567777655 36899999986
No 326
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.04 E-value=1.8e+02 Score=32.19 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 336 ATQLETQRQYYESLLAEAK 354 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~ 354 (423)
..+++.++.+|..++.++.
T Consensus 170 ~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 170 EKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5566666666666666653
No 327
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=26.99 E-value=3.6e+02 Score=28.07 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--H--HHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhh
Q 014500 330 EYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVE--K--AVASKMQDIQNELDIC--------EEAKKAVADVNPLT 397 (423)
Q Consensus 330 EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~--k--~~~~k~~~lq~kl~~~--------~~E~~~l~~ln~~L 397 (423)
|=.......|..+|.-||.+|.++++..+-.|.|... . +--+.|-.|++|...- ..|..+.+.-|+-+
T Consensus 22 ~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~l~~~~~~~q~v 101 (328)
T PF15369_consen 22 EEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSELSAARMKEQQV 101 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhhhhhhhccC
Confidence 3345667889999999999999999987766665311 0 1123334444444433 33333334444444
Q ss_pred ccCCcEEEEEeccccceeeeee
Q 014500 398 THFRSVILFFFGGVGGCYLMLL 419 (423)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (423)
...+.-.=---++.-|.||-+.
T Consensus 102 sskKs~~qsss~eLDGSYLsvA 123 (328)
T PF15369_consen 102 SSKKSPLQSSSSELDGSYLSVA 123 (328)
T ss_pred CcCCCCCCCCCCCCCcchhccc
Confidence 4443333333344566666543
No 328
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=26.85 E-value=2.6e+02 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=11.7
Q ss_pred cccccceeEEEEeecC
Q 014500 87 GSHIDHVEELIFIRND 102 (423)
Q Consensus 87 ~~~~~~I~~iriir~~ 102 (423)
-+....|+++||+|.-
T Consensus 228 ~PvVCnVEQVRiLRgL 243 (641)
T KOG3915|consen 228 TPVVCNVEQVRILRGL 243 (641)
T ss_pred eeeeechHHHHHHhcc
Confidence 3556788889998844
No 329
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=26.75 E-value=2.7e+02 Score=33.04 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQRQY 345 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~y 345 (423)
|+-+.+.+-.+|..||-|-||+-
T Consensus 884 ~l~~qQe~~a~l~~sQ~el~~~l 906 (1283)
T KOG1916|consen 884 QLLAQQETMAQLMASQKELQRQL 906 (1283)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445666777777776666653
No 330
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.70 E-value=5.4e+02 Score=29.54 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=5.0
Q ss_pred CCCCccccc
Q 014500 167 LPTCPICLE 175 (423)
Q Consensus 167 lptCpICLE 175 (423)
.-+|||=|-
T Consensus 364 ~~~cpI~L~ 372 (717)
T PF10168_consen 364 SYSCPIRLH 372 (717)
T ss_pred CCCcceEEE
Confidence 347777443
No 331
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.59 E-value=38 Score=22.15 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=4.5
Q ss_pred Cccccccc
Q 014500 205 SCQVCRFC 212 (423)
Q Consensus 205 ~CPvCR~~ 212 (423)
.||.|+..
T Consensus 2 ~CP~C~~~ 9 (26)
T PF10571_consen 2 TCPECGAE 9 (26)
T ss_pred cCCCCcCC
Confidence 46666653
No 332
>PHA03386 P10 fibrous body protein; Provisional
Probab=26.57 E-value=93 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 361 IPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
|..+ -|++..|...||+.++.+++..+.|+.
T Consensus 10 Ir~d-Ikavd~KVdaLQ~qV~dv~~n~~~LDa 40 (94)
T PHA03386 10 ILDA-VQEVDTKVDALQTQLNGLEEDSQPLDG 40 (94)
T ss_pred HHHH-HHHHhhHHHHHHHHHHHHHhcchhhhh
Confidence 4444 568888999999999988876665543
No 333
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=26.56 E-value=29 Score=38.85 Aligned_cols=46 Identities=26% Similarity=0.785 Sum_probs=27.8
Q ss_pred CCCCcccccccCCCCCcce--eecCCCccchhhhhcccc-------cCcccccccc
Q 014500 167 LPTCPICLERLDPDTSGIL--STICDHSFQCSCTAKWTV-------LSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~--t~~C~H~Fh~~Cl~kW~~-------~~CPvCR~~~ 213 (423)
...|++|-.. .....|.+ --.|+-.+|..|+..|.+ ..||-||.+.
T Consensus 18 ~~mc~l~~s~-G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSS-GKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccc-cccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 3456666442 22222322 225677889999998862 4699998753
No 334
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.32 E-value=5.6e+02 Score=24.82 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
....+++.|+..|+-..+|.+-|..|
T Consensus 172 k~e~~~~SLe~~LeQK~kEn~ELtkI 197 (207)
T PF05010_consen 172 KEEMKVQSLEESLEQKTKENEELTKI 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666544
No 335
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.32 E-value=4.3e+02 Score=26.13 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccH----H---HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIP----E---TVE------KAVASKMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~----~---~~~------k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
|+..|..=|..|+..+.....+.+.... + ... .++...+..+..++..+..++..|+..|..|.
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 6777888888888888777766543222 2 111 12334455555555566666666665555543
No 336
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.25 E-value=2.6e+02 Score=21.69 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKSKRES-----LIPETVEKAVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~-----~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
|+.+....+..|..++.+-.. ..-+++...-..|+..++.++.++.+.+..|
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556666666664321 1112223334557777777777776665554
No 337
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=26.11 E-value=3.5e+02 Score=25.09 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhccCCc
Q 014500 382 ICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 382 ~~~~E~~~l~~ln~~L~~~~~ 402 (423)
-...+.+.|.+|+.+|.+-++
T Consensus 63 l~~~~~~~L~~Ie~AL~Ri~~ 83 (159)
T TIGR02890 63 LREHEERELREIEHALQKIEN 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344556668888988887765
No 338
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.08 E-value=49 Score=30.45 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~ 391 (423)
|--|++.|+||+++|.+.++
T Consensus 67 kwaKl~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEKLN 86 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556667777776666665
No 339
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=26.00 E-value=4.2e+02 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
+.|++.|.. -+.++.+.-|.|||-+..+-+.
T Consensus 51 t~kl~el~K----k~~k~I~ksrpf~elk~~er~~ 81 (426)
T KOG2008|consen 51 TVKLDELVK----KIGKAIEKSRPFWELKRVERQA 81 (426)
T ss_pred HHHHHHHHH----HHHHHHhhcccHHHHHHHHHHH
Confidence 455555544 4568899999999998866543
No 340
>PLN02678 seryl-tRNA synthetase
Probab=25.94 E-value=3e+02 Score=29.66 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
+.++|.+++..++++.+.++ +|++.|
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444 444443
No 341
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.83 E-value=1.6e+02 Score=27.67 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAV 390 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l 390 (423)
+.+|++++..+++|...|
T Consensus 113 ~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 113 NESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 342
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=25.80 E-value=2.9e+02 Score=27.34 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
+.|++....+...=|...||.--.+|...+..++++..++.+.
T Consensus 84 E~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk 126 (231)
T cd07643 84 ETKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKK 126 (231)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666668899999999999999888875554443
No 343
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.66 E-value=3.4e+02 Score=23.28 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEE
Q 014500 372 KMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFF 407 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~ 407 (423)
.+..+...+.+..+-+..|+.|... .+.++++-+
T Consensus 21 ~i~~l~~~i~e~~~~~~~L~~l~~~--~~~~~lv~l 54 (126)
T TIGR00293 21 QIAALRALIAELETAIETLEDLKGA--EGKETLVPV 54 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--CCCeEEEEc
Confidence 3344444444444445555555543 445555533
No 344
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.27 E-value=4.5e+02 Score=22.79 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 347 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA 386 (423)
Q Consensus 347 E~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E 386 (423)
..++.++..-++.+...+..+.+.+.+.+|-.+|.|..+|
T Consensus 63 ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkki~e 102 (103)
T COG4847 63 IVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKKIEE 102 (103)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555554444443556666777777777776655
No 345
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.21 E-value=1.6e+02 Score=32.65 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 324 ~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
|..|..+|......--+.=..+|+.+|.+++.
T Consensus 251 i~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 251 IREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45577788877766666667788888888884
No 346
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=25.13 E-value=5.4e+02 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQ 342 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Q 342 (423)
.+.+.+..+|...|..--...
T Consensus 66 ~eA~~~~~e~e~~l~~a~~ea 86 (173)
T PRK13453 66 LNAQKLEEENKQKLKETQEEV 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666554443333
No 347
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.13 E-value=3.9e+02 Score=28.06 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 369 VASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
...|+.++++++++..++++.++++
T Consensus 271 ~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 271 KKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888777654
No 348
>PRK10244 anti-RssB factor; Provisional
Probab=25.08 E-value=1.3e+02 Score=25.59 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCC
Q 014500 333 RLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTTHFR 401 (423)
Q Consensus 333 ~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~~ 401 (423)
.-|+.|.|.|-.---.+|..+..+....+.+.+++++..-+ +..-+-...+..-|. .+|+.|...+
T Consensus 20 KeL~AQVEAlellitAlL~~~~~~~~~~li~~Ie~Ai~~a~---~~~~~~~~~D~eLL~~~v~~LL~~~r 86 (88)
T PRK10244 20 KELTAQVEALELLVTAMLRTMGKNGQQELIEQVEGAINAVS---KPDDSVPDSDTELLLTYVNKLLRHPR 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHhc---cccccccchHHHHHHHHHHHHHhhhc
Confidence 35788999998888888887777766667676666653211 222222233344444 6777776543
No 349
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.03 E-value=4e+02 Score=25.36 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 014500 342 QRQYYESLLAEA 353 (423)
Q Consensus 342 Qr~yyE~~l~~~ 353 (423)
-+.+.|.++.+.
T Consensus 111 ~~k~le~~~~~~ 122 (190)
T PF05266_consen 111 ERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHH
Confidence 344455555444
No 350
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.00 E-value=6.4e+02 Score=24.44 Aligned_cols=70 Identities=16% Similarity=0.349 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLET---QRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~---Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
+.++..+..||...+..-++. |+.-.+..+.++..+.......- ..+..-+.+|.++++|.+..+..++.
T Consensus 39 ~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL--~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 39 NQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADL--NSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355666778887766554433 23333344444443332222111 12333445555555555555554443
No 351
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=24.90 E-value=2.6e+02 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
.--..|++.||++..|+-.|++
T Consensus 34 ~l~eaL~~ELDsL~~EkvhLee 55 (134)
T PF15233_consen 34 ALWEALQRELDSLNGEKVHLEE 55 (134)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 4456777888888777777764
No 352
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.80 E-value=4.3e+02 Score=22.36 Aligned_cols=31 Identities=6% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
.+-+..|...++..++++.++.+.+. ++++.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777766665 44443
No 353
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=24.47 E-value=4.8e+02 Score=23.43 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 014500 326 AIVDEYNRL 334 (423)
Q Consensus 326 ~i~~EY~~l 334 (423)
.|..||..|
T Consensus 42 ~Il~eye~m 50 (125)
T PF13256_consen 42 QILHEYEGM 50 (125)
T ss_pred HHHHHHHHH
Confidence 344455444
No 354
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=24.42 E-value=3.6e+02 Score=21.38 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRE-------SLIPETVEKAVASKMQDIQNELDICE 384 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~-------~~i~~~~~k~~~~k~~~lq~kl~~~~ 384 (423)
-....+.++.++.+.|.+.--+-. ..+.++ .|++-.++|.+..++|..+
T Consensus 21 ~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~-RK~~v~~iq~~l~~lD~~k 76 (76)
T PF02179_consen 21 DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREK-RKQAVKRIQQLLDKLDSLK 76 (76)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHH-HHHHHHHHHHHHHHHHccC
Confidence 455666677777777766544322 234444 6777788888888888753
No 355
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.40 E-value=4.5e+02 Score=24.81 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhc
Q 014500 382 ICEEAKKAVADVNPLTT 398 (423)
Q Consensus 382 ~~~~E~~~l~~ln~~L~ 398 (423)
+-..|+++|+.-|+-|.
T Consensus 167 ~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777776666553
No 356
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.36 E-value=3.7e+02 Score=26.46 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014500 340 ETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~ 358 (423)
+..+.=|+.++.++++++.
T Consensus 56 ~~~~~e~e~~l~~a~~ea~ 74 (250)
T PRK14474 56 GQEAERYRQKQQSLEQQRA 74 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544433
No 357
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.03 E-value=1.6e+02 Score=25.51 Aligned_cols=37 Identities=11% Similarity=0.320 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 014500 361 IPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~ 398 (423)
+.+| .+-+..|++.|+..+++..++...++ ++|....
T Consensus 85 ~~eA-~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 85 LEEA-IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 55667788888888888888888776 5665443
No 358
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.81 E-value=8.3e+02 Score=25.30 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhhccCCcE
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVNPLTTHFRSV 403 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~~~~ 403 (423)
=+++|+++.+++.+||..|. .|++....+.+.
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Confidence 46788999999999999998 788766655444
No 359
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.77 E-value=1.9e+02 Score=33.25 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHH-HHhhhhcc
Q 014500 347 ESLLAEAKSKRESLIPETVEK-AVASKMQDIQNELDI-----------CEEAKKAVA-DVNPLTTH 399 (423)
Q Consensus 347 E~~l~~~~~~~~~~i~~~~~k-~~~~k~~~lq~kl~~-----------~~~E~~~l~-~ln~~L~~ 399 (423)
.++|+.++++-..++++|..- .+..||..|+..+.| +.++...|+ ++|+.|..
T Consensus 461 ~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 461 NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhc
Confidence 355566666666666665432 234555555544444 223345555 56666543
No 360
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.75 E-value=4.4e+02 Score=22.15 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q 014500 322 SKVEAIVDEYN 332 (423)
Q Consensus 322 ~K~e~i~~EY~ 332 (423)
.-+++...+|.
T Consensus 14 ~el~~t~~d~~ 24 (99)
T PF10046_consen 14 SELEATNEDYN 24 (99)
T ss_pred HhHHHHHHHHH
Confidence 33444444444
No 361
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.70 E-value=5.9e+02 Score=29.54 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------cHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 329 DEYNRLLATQLETQRQYYESLLAEAKSKRESL-----------------IPETV--EKAVASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 329 ~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~-----------------i~~~~--~k~~~~k~~~lq~kl~~~~~E~~~ 389 (423)
.+-.---+.+.|+=|.-+|.+|.++.++..+. |.+-. ..++...+..|+.+|+.++||..+
T Consensus 73 ~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~ 152 (769)
T PF05911_consen 73 HEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSS 152 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333456677777777777777766543211 11110 124566788999999999999999
Q ss_pred HH-HHh
Q 014500 390 VA-DVN 394 (423)
Q Consensus 390 l~-~ln 394 (423)
|+ ++.
T Consensus 153 Lkye~~ 158 (769)
T PF05911_consen 153 LKYELH 158 (769)
T ss_pred HHHHHH
Confidence 98 654
No 362
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.64 E-value=2.5e+02 Score=30.16 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 334 LLATQLETQRQYYESLLAEA 353 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~ 353 (423)
.+.+|+.-||.-|+..-+.+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~ 50 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKL 50 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46888888888887665443
No 363
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=23.64 E-value=2e+02 Score=33.42 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLAEAKSKRE-----SLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~~~~~-----~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
-|+.|....|..|++++++.. .+.-+++.+.-..|+++++.++.++++.+..|+
T Consensus 815 rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 815 RLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666777777776543 233345455556677777777777777666553
No 364
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.63 E-value=50 Score=37.73 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=19.6
Q ss_pred ccccccc---ccCCCCCCcCCCCCC-CceeeecccCcc
Q 014500 206 CQVCRFC---HQQDERPTCSVCGTV-ENLWVCLICGFV 239 (423)
Q Consensus 206 CPvCR~~---~~~~~~~~C~~C~~~-~~lWiCL~CG~v 239 (423)
||.|-.. ++......|..||.. .-...|..||..
T Consensus 447 Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 5666532 122345667777766 346677777753
No 365
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.54 E-value=4.3e+02 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 369 VASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l 390 (423)
...+++.|+.++.++.+|.+.+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555533
No 366
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.49 E-value=2.5e+02 Score=29.43 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
.....+++.+++....+++|-+.|. ++-+.|
T Consensus 144 ~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 144 QCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3556788888888888888888774 555544
No 367
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=23.48 E-value=5.8e+02 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccH
Q 014500 338 QLETQRQYYESLLAEAKSKRESLIP 362 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~~~~~~~i~ 362 (423)
+.++.+.=|+.+|.++++++.+.+.
T Consensus 71 ea~~~~~e~e~~L~~Ar~eA~~Ii~ 95 (167)
T PRK08475 71 ESKEKKEDALKKLEEAKEKAELIVE 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554443333
No 368
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.45 E-value=4.8e+02 Score=24.62 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014500 376 IQNELDICEEAKKAVA 391 (423)
Q Consensus 376 lq~kl~~~~~E~~~l~ 391 (423)
.+.+++.+++..+.|+
T Consensus 168 ~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 369
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.37 E-value=3.7e+02 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 369 VASKMQDIQNELDICEEAKK 388 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~ 388 (423)
+.+++..+..++...+++..
T Consensus 78 l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 78 LKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 370
>PRK09039 hypothetical protein; Validated
Probab=23.30 E-value=5.7e+02 Score=26.42 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRL 334 (423)
Q Consensus 320 ~~~K~e~i~~EY~~l 334 (423)
.+.++..+..+|..+
T Consensus 79 l~~~l~~l~~~l~~a 93 (343)
T PRK09039 79 LQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777733
No 371
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.28 E-value=4.8e+02 Score=23.43 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccH
Q 014500 336 ATQLETQRQYYESLLAEAKSKRESLIP 362 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~~~i~ 362 (423)
..+.+..+.=|+.+|..++.++...+.
T Consensus 49 ~~eA~~~~~~~e~~L~~A~~ea~~ii~ 75 (159)
T PRK09173 49 REEAQQLLAEYQRKRKEAEKEAADIVA 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666555444333
No 372
>PRK07883 hypothetical protein; Validated
Probab=23.14 E-value=3e+02 Score=30.33 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=16.4
Q ss_pred ccCCcEEEEEeccccceeeeeee
Q 014500 398 THFRSVILFFFGGVGGCYLMLLI 420 (423)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (423)
.++.+|+.+...+ .+|+..++|
T Consensus 451 ~~~~dv~~~~~~~-~~~~~~~~v 472 (557)
T PRK07883 451 AAVPELVAARPDG-EGGWELAVV 472 (557)
T ss_pred CCCceEEEEEEcC-CcEEEEEEE
Confidence 3688888888888 777666655
No 373
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.11 E-value=5.9e+02 Score=23.33 Aligned_cols=13 Identities=46% Similarity=0.578 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLA 336 (423)
Q Consensus 324 ~e~i~~EY~~lL~ 336 (423)
.+.+..+|...|.
T Consensus 68 A~~~~~e~e~~L~ 80 (175)
T PRK14472 68 AEAILRKNRELLA 80 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 4445556655543
No 374
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=23.10 E-value=2.2e+02 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
++.+.+.+++|.++|+.+.+-.+.|+
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777766666664
No 375
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=23.05 E-value=4.2e+02 Score=23.83 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 369 VASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l 390 (423)
+..+.++...+.+.+...++.+
T Consensus 65 ~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 65 FEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 376
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.03 E-value=3.1e+02 Score=23.39 Aligned_cols=42 Identities=10% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEE 385 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~ 385 (423)
+.+.|+....|.|..+..++++ .+.+..++.++|+++.++..
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~---------~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQ---------EERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhc
No 377
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.98 E-value=1.1e+02 Score=29.39 Aligned_cols=37 Identities=32% Similarity=0.632 Sum_probs=25.0
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc---cCcccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---LSCQVC 209 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~---~~CPvC 209 (423)
.+.+.|..|-+. |=+.--|-|+-+..| .|.+ ..||.+
T Consensus 58 ~~~~~C~nCg~~------GH~~~DCP~~iC~~C--~~~~H~s~~C~~~ 97 (190)
T COG5082 58 EENPVCFNCGQN------GHLRRDCPHSICYNC--SWDGHRSNHCPKP 97 (190)
T ss_pred ccccccchhccc------CcccccCChhHhhhc--CCCCcccccCCcc
Confidence 568899999876 233446777777778 6763 346666
No 378
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.88 E-value=50 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=20.0
Q ss_pred CCCCCCcCCCCCCCc--eeeecccCccc
Q 014500 215 QDERPTCSVCGTVEN--LWVCLICGFVG 240 (423)
Q Consensus 215 ~~~~~~C~~C~~~~~--lWiCL~CG~vg 240 (423)
+++...|..||.... .|.|..||..+
T Consensus 351 ~~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 351 RKPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCCEECCCCCCCCccceeECcCCCCcc
Confidence 355678999998866 45899998764
No 379
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.80 E-value=7.7e+02 Score=24.59 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=12.1
Q ss_pred EEEEEecCCCCCHHHHHHHhc
Q 014500 67 CIFVVAVPNYLSSDEFVRFCG 87 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~ 87 (423)
-++|+.=|+.=-+.||++-+.
T Consensus 16 ~I~vITs~~gAa~~D~~~~~~ 36 (319)
T PF02601_consen 16 RIAVITSPTGAAIQDFLRTLK 36 (319)
T ss_pred EEEEEeCCchHHHHHHHHHHH
Confidence 355666666655666665544
No 380
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.77 E-value=4.3e+02 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 326 AIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 326 ~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
.|..+|..| .+.|+..+.--=+.|++..+
T Consensus 43 ~I~~~f~~l-~~~L~~~e~~ll~~l~~~~~ 71 (127)
T smart00502 43 QIKAAFDEL-RNALNKRKKQLLEDLEEQKE 71 (127)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 355555554 34455544433333333333
No 381
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.73 E-value=2.6e+02 Score=33.23 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHhhhhccC
Q 014500 337 TQLETQRQYYESLLAE-AKSKRESLIPETVEKAVASKMQDIQNELDICEEA-------KKAVA-DVNPLTTHF 400 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~-~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E-------~~~l~-~ln~~L~~~ 400 (423)
.++++|+.|||+.|.. +-.+-..+..+++ +.++.+..+|+++++...+| |..|. .||.+|.+-
T Consensus 758 ~~~~~~~~~~e~el~sel~sqLt~ee~e~l-~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r 829 (1200)
T KOG0964|consen 758 HKLESQSNYFESELGSELFSQLTPEELERL-SKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKR 829 (1200)
T ss_pred HHHHHHHHhHHHHHhHHHHhhcCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999987743 3233333333332 23455566666666655444 33444 566666543
No 382
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.73 E-value=47 Score=34.72 Aligned_cols=25 Identities=36% Similarity=0.841 Sum_probs=18.8
Q ss_pred CCCCCCcCCCCCCC--------ceeeecccCcc
Q 014500 215 QDERPTCSVCGTVE--------NLWVCLICGFV 239 (423)
Q Consensus 215 ~~~~~~C~~C~~~~--------~lWiCL~CG~v 239 (423)
+++...|.+|+... .+||||.|.-.
T Consensus 16 ~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~ 48 (386)
T KOG0704|consen 16 QDENKKCFECGAPNPQWVSVSYGIFICLECSGK 48 (386)
T ss_pred cccCCceeecCCCCCCeEeecccEEEEEecCCc
Confidence 35778899998764 47899999643
No 383
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=22.67 E-value=4.7e+02 Score=24.40 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 344 QYYESLLAEAKSKRESLIPE---TVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 344 ~yyE~~l~~~~~~~~~~i~~---~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.=||.+|.++-++.+..+.. .....+..++..++.++.+|.+-+..++
T Consensus 115 qe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE 165 (173)
T PF07445_consen 115 QEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIE 165 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655554442 2233567788999999999998888876
No 384
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=22.60 E-value=5.4e+02 Score=24.85 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhccCCcEEEE
Q 014500 381 DICEEAKKAVADVNPLTTHFRSVILF 406 (423)
Q Consensus 381 ~~~~~E~~~l~~ln~~L~~~~~~~~~ 406 (423)
-........|+.+.+.|.++..+++.
T Consensus 223 p~~~~~~~~le~~~~~~~~~~~~~~~ 248 (261)
T TIGR01933 223 PDVTRERLYLETMEKVLSNTRKVLLD 248 (261)
T ss_pred hHHHHHHHHHHHHHHHHccCCeEEEE
Confidence 34455556677778888766665543
No 385
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=22.55 E-value=7.2e+02 Score=25.14 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE---SLIPETVEKAVAS-------KMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~---~~i~~~~~k~~~~-------k~~~lq~kl~~~~~E~~~l 390 (423)
-++.+.+...++.+ .++|+.||.=-...|+..-.+.. ++|++- -+.+.. .-..|..+-|.+..|...+
T Consensus 133 l~~a~~l~~~~n~~-~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~l-N~~I~~~~~~~g~~~n~L~DqRD~ll~~LS~~ 210 (322)
T TIGR02492 133 LESAQALANSFNQT-SNELQDLRKGINAEIKSAVTEINSLLKQIASL-NKEIQQVEAKSGQDANDLLDQRDLLLKELSQL 210 (322)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCCchHhHHHHHHHHHHHHhH
Confidence 36667788888776 77777777766666655444322 222221 112211 2347888888888888888
Q ss_pred HHHhhhhccCCcEEEEEecc
Q 014500 391 ADVNPLTTHFRSVILFFFGG 410 (423)
Q Consensus 391 ~~ln~~L~~~~~~~~~~~~~ 410 (423)
-+|+-.-..+..+-++.-+|
T Consensus 211 v~i~v~~~~~G~~~v~~~~G 230 (322)
T TIGR02492 211 IGISVSENEDGTVNVYTGSG 230 (322)
T ss_pred cCeEEEEcCCCcEEEEECCC
Confidence 88887777778887766433
No 386
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.52 E-value=6.2e+02 Score=23.36 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPET 364 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~ 364 (423)
+..+.+..+|...|..- |.--...+.++++.+++.+.++
T Consensus 52 ~eA~~l~~e~e~~L~~A----r~EA~~Ii~~A~~~a~~~~~ea 90 (154)
T PRK06568 52 EDAALLFEQTNAQIKKL----ETLRSQMIEESNEVTKKIIQEK 90 (154)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666554321 1112235555555544444443
No 387
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=22.47 E-value=23 Score=35.25 Aligned_cols=36 Identities=31% Similarity=0.671 Sum_probs=25.0
Q ss_pred CCCCCcccccc--cCCCCCcceeecCCCccchhhhhcc
Q 014500 166 ELPTCPICLER--LDPDTSGILSTICDHSFQCSCTAKW 201 (423)
Q Consensus 166 ElptCpICLE~--ld~~~~gi~t~~C~H~Fh~~Cl~kW 201 (423)
+.-.||+|... |.+++.-++..-|=|..|.+|+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI 46 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI 46 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH
Confidence 45689999874 4555433334459999999999874
No 388
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=22.46 E-value=1.6e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 014500 333 RLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAV 369 (423)
Q Consensus 333 ~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~ 369 (423)
.-|+.|.|.|..---.++..+......++-+.+++++
T Consensus 20 KeL~AqVEAleivitALL~~l~~~~~~~~i~~I~~Ai 56 (87)
T PF10796_consen 20 KELTAQVEALEIVITALLRTLDQGGRQEMIESIEKAI 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3468889998888888888886666666666666655
No 389
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.42 E-value=4.4e+02 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQY 345 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~y 345 (423)
|..++.+..||......-=+.|.+|
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555533333333333
No 390
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.25 E-value=5.4e+02 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014500 369 VASKMQDIQNELDICEEAKKAVADVNPLT 397 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~~ln~~L 397 (423)
....-..|+..++.+++-+..|.+=|..|
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554
No 391
>PLN02931 nucleoside diphosphate kinase family protein
Probab=22.18 E-value=2.2e+02 Score=26.92 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=34.8
Q ss_pred CccEEEEEecCCCC---CHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYL---SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~m---s~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
...+|+|+= |..+ -..+++.-+...--.|..+++++- +.+.|++||..+.|++|-
T Consensus 29 ~erTlalIK-Pdav~~~~~G~Il~~I~~~Gf~I~~~K~~~L--------------t~e~a~~fY~~h~gk~ff 86 (177)
T PLN02931 29 EERTLAMIK-PDGLSGNYTERIKEVILESGFSIVKEMTTQL--------------DEDRASLFYAEHSSRSFF 86 (177)
T ss_pred ceeEEEEEC-chhhhcccHHHHHHHHHHCCCEEEeeeeecC--------------CHHHHHHHHHHhCCCccH
Confidence 345666653 6555 134455544433445555555553 378899999999999983
No 392
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.14 E-value=4.8e+02 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014500 337 TQLETQRQYYESLLAEAKSKRE 358 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~~~~~ 358 (423)
.+|+.|+...+++|+++++..+
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~ 109 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQ 109 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888877543
No 393
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=20 Score=39.24 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=31.0
Q ss_pred CceeeecccCcccccCCcchhh-hhhhhcCCCceeeeCC
Q 014500 228 ENLWVCLICGFVGCGRYKEGHA-VRHWKDTQHWYSLDLR 265 (423)
Q Consensus 228 ~~lWiCL~CG~vgCgRy~~~HA-~~H~e~t~H~lal~l~ 265 (423)
..+-+||.|+..+|++-..-|. ..|+..|-|+..+-+.
T Consensus 36 ~si~vClnCfqs~C~~h~~~H~~~~~~c~tvh~i~~tia 74 (749)
T COG5207 36 HSISVCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETIA 74 (749)
T ss_pred cceehHHHHhHhhhhhccceeecchhhhhhhhhhhhhhh
Confidence 4588999999999999888888 5888888888755443
No 394
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=22.07 E-value=1.5e+02 Score=25.13 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCC
Q 014500 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAE 136 (423)
Q Consensus 74 P~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle 136 (423)
|..-|+.|..++++-...++..-.+++++. ..-++|++.-+++.+-+.+.+.+..+++.-+.
T Consensus 2 ~~~~t~~~~a~~~~~~~~~~~Ktlv~~~~~-~~~~lv~~~~d~~ld~~kl~~~~g~~~l~~a~ 63 (123)
T PF04073_consen 2 PPTRTIEDAAKALGVPPEQIVKTLVLKDKK-GRPVLVVLPGDHRLDLKKLAKALGARRLRLAS 63 (123)
T ss_dssp TTTSSHHHHHHHHTCSGGGEEEEEEEEETT-TEEEEEEEETTSEB-HHHHHHHHT-SSEEE-H
T ss_pred cCCCcHHHHHHHcCCCHHHEEEEEEEEECC-CCEEEEEECCCCEecHHHHhccccccchhhcc
Confidence 667899999999998888888888888532 33678999999999999999988877665443
No 395
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.90 E-value=7.4e+02 Score=29.83 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~--sQLe~Qr~yyE~~l~~~~~~ 356 (423)
.+.-++.+..|-..+=. -+|+.||.=+|..|++++++
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~ 697 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKK 697 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555533 36788888899988888764
No 396
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.84 E-value=4e+02 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLAEAK 354 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~ 354 (423)
||..|...|+..++.+.
T Consensus 3 ~l~~~~~~l~~~i~~l~ 19 (129)
T cd00584 3 QLAAQLQVLQQEIEELQ 19 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444433
No 397
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.76 E-value=7e+02 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
+.+..++.++.....+..+|+...+.+...|.
T Consensus 382 ~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~ 413 (562)
T PHA02562 382 AKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666555544444443
No 398
>PLN02943 aminoacyl-tRNA ligase
Probab=21.75 E-value=2.6e+02 Score=33.01 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 339 LETQRQYYESLLAEAKSKRE-----SLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~-----~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
|+.|....|..|++++++.. .+..+++.+.-..|+++++.++.+.++.++.|+
T Consensus 894 L~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 894 LSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666667777777776543 233445555566788888888888887777665
No 399
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=21.69 E-value=1.5e+02 Score=18.69 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 374 QDIQNELDICEEAKKAV 390 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l 390 (423)
++|..++.++++|+|.+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34555555556666554
No 400
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=21.55 E-value=2.2e+02 Score=23.89 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYES 348 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~ 348 (423)
.|.-++...|. |||.||.+|-+
T Consensus 12 ~Kq~~~~k~F~-----~Le~~RE~aIe 33 (84)
T PF10752_consen 12 QKQHAIIKQFL-----QLEQQREAAIE 33 (84)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34444444443 44666655533
No 401
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=21.54 E-value=3.6e+02 Score=29.83 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEK------AVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k------~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
|.+-|..|++=+..+|.++..+-+..+.+..++ .+...++.++.|+|.+-.++..|.
T Consensus 370 Ls~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs 432 (531)
T PF15450_consen 370 LSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVS 432 (531)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455678888889999998887666555554443 345566666666666555555544
No 402
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=21.43 E-value=5.5e+02 Score=24.49 Aligned_cols=17 Identities=53% Similarity=0.651 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQ 338 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQ 338 (423)
+|++.+-.||..|-++|
T Consensus 120 ekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 120 EKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554444
No 403
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.34 E-value=4.1e+02 Score=28.17 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 369 VASKMQDIQNELDICEEAKK 388 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~ 388 (423)
+..++..++++++.++++..
T Consensus 81 l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 404
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.23 E-value=7.1e+02 Score=28.12 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~ 355 (423)
+++...+.+....|..+++.=-.||++++...++
T Consensus 57 ~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~ 90 (611)
T KOG2398|consen 57 EAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKK 90 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777777777777776665544
No 405
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.18 E-value=4.3e+02 Score=24.53 Aligned_cols=22 Identities=5% Similarity=0.148 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 370 ASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.++.+++..+++++++|.+..+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 3455566666666666666544
No 406
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.07 E-value=6.2e+02 Score=23.23 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRL---LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEE 385 (423)
Q Consensus 321 ~~K~e~i~~EY~~l---L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~ 385 (423)
..+++.|..+|..= |..||=+.|.=+..++.. ..-.++..+++.+++++|+++|....-
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~------~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTA------NPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777543 223332222222222211 112233345666777778777775544
No 407
>PHA03161 hypothetical protein; Provisional
Probab=21.00 E-value=3.4e+02 Score=25.21 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~ 389 (423)
..+.+|+.+++.+++|+++
T Consensus 89 ~~~E~L~drv~eLkeel~~ 107 (150)
T PHA03161 89 SAAEDLQDKILELKEDIHF 107 (150)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667788888888877775
No 408
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=20.93 E-value=53 Score=29.93 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=32.4
Q ss_pred CCCCCcccccccCCCCCcce--eecCCCccchhhhhc-cc----ccCccccccccc
Q 014500 166 ELPTCPICLERLDPDTSGIL--STICDHSFQCSCTAK-WT----VLSCQVCRFCHQ 214 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~--t~~C~H~Fh~~Cl~k-W~----~~~CPvCR~~~~ 214 (423)
.+-.|-||.|...+.. .+ .--||=+-+..|-.. |. ...||+|++++.
T Consensus 79 ~lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 4668999999765421 22 224676777777766 97 467999999763
No 409
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.90 E-value=44 Score=34.15 Aligned_cols=60 Identities=25% Similarity=0.461 Sum_probs=40.6
Q ss_pred CCCCcccccccCCCC-----CcceeecCCCccchhhhhc------------ccccCcccccccccC---CCCCCcCCCCC
Q 014500 167 LPTCPICLERLDPDT-----SGILSTICDHSFQCSCTAK------------WTVLSCQVCRFCHQQ---DERPTCSVCGT 226 (423)
Q Consensus 167 lptCpICLE~ld~~~-----~gi~t~~C~H~Fh~~Cl~k------------W~~~~CPvCR~~~~~---~~~~~C~~C~~ 226 (423)
-..|-+||+.-.... +-|.--+|.-..|-.|+.- |....|-.|+.+.+| .+...|+.|+.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDR 337 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDR 337 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccC
Confidence 347889988644322 2244567888899999842 666677777777655 45677999864
No 410
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.88 E-value=4e+02 Score=21.09 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 370 ASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
..=++..+++|++.+++++.|.
T Consensus 35 ~~L~k~c~~~L~~ae~kv~~l~ 56 (67)
T TIGR01280 35 MALARRCEKKLAQAEQRVRKLL 56 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777776666654
No 411
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.78 E-value=1.7e+02 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 361 IPETVEKAVASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
....+.....+|++++..+++..++|..+|+.+
T Consensus 962 ~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l~~~ 994 (995)
T KOG0432|consen 962 APLEVKEKNKEKLKELEAEIENLKAALANLKSL 994 (995)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 333444456678888888888888888777643
No 412
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=20.68 E-value=2.6e+02 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHH
Q 014500 340 ETQRQYYESLLAEAKSKRESLIPE 363 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~~~i~~ 363 (423)
.+||++++..+++.+.+-+..-.+
T Consensus 57 ~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 57 KSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred HhhhhHHHHHhHHHHHHHHhChHh
Confidence 578888888888855554443333
No 413
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.58 E-value=5e+02 Score=21.62 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 371 SKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
.+...+..++..++++...++ +++..|
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544 455444
No 414
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.42 E-value=61 Score=22.74 Aligned_cols=20 Identities=35% Similarity=1.044 Sum_probs=12.3
Q ss_pred CcCCCCCC-----CceeeecccCcc
Q 014500 220 TCSVCGTV-----ENLWVCLICGFV 239 (423)
Q Consensus 220 ~C~~C~~~-----~~lWiCL~CG~v 239 (423)
+|.+|+.. +..+.|-.||++
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceE
Confidence 35555543 357778888764
No 415
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=20.34 E-value=63 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=14.1
Q ss_pred cchhhhhccc---------------ccCcccccccc
Q 014500 193 FQCSCTAKWT---------------VLSCQVCRFCH 213 (423)
Q Consensus 193 Fh~~Cl~kW~---------------~~~CPvCR~~~ 213 (423)
.|.+|+.+|- ...||.||..+
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4667998884 13688887643
No 416
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.32 E-value=9.7e+02 Score=24.80 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 319 LFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAK 354 (423)
Q Consensus 319 ~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~ 354 (423)
-...++..+..+|. .|..+|+.=|.--..+..+.+
T Consensus 24 ~l~~~~~sL~qen~-~Lk~El~~ek~~~~~L~~e~~ 58 (310)
T PF09755_consen 24 QLRKRIESLQQENR-VLKRELETEKARCKHLQEENR 58 (310)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35688889998854 557777776665555554443
No 417
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=20.30 E-value=3.7e+02 Score=19.97 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~ 389 (423)
.-++..+++|++.+.+++.
T Consensus 34 ~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 34 ELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4445556666666655543
No 418
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=8.3e+02 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 014500 319 LFNSKVEAIVDEYNRLLA 336 (423)
Q Consensus 319 ~~~~K~e~i~~EY~~lL~ 336 (423)
..+.++..-..+|+.+..
T Consensus 28 ~~~~~i~~~ds~l~~~~~ 45 (265)
T COG3883 28 LLSDKIQNQDSKLSELQK 45 (265)
T ss_pred hhhhHHHhhHHHHHHHHH
Confidence 344555555666666633
No 419
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.22 E-value=52 Score=22.16 Aligned_cols=22 Identities=41% Similarity=0.940 Sum_probs=15.2
Q ss_pred CcCCCCCCCceeeecccCccccc
Q 014500 220 TCSVCGTVENLWVCLICGFVGCG 242 (423)
Q Consensus 220 ~C~~C~~~~~lWiCL~CG~vgCg 242 (423)
.|.+|+. ...+.|..|+...|+
T Consensus 4 ~C~vC~~-~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 4 LCSVCGN-PAKYRCPRCGARYCS 25 (30)
T ss_dssp EETSSSS-EESEE-TTT--EESS
T ss_pred CCccCcC-CCEEECCCcCCceeC
Confidence 5788888 778889999888774
No 420
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=20.17 E-value=59 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhccCCcEEEEEeccccc
Q 014500 386 AKKAVADVNPLTTHFRSVILFFFGGVGG 413 (423)
Q Consensus 386 E~~~l~~ln~~L~~~~~~~~~~~~~~~~ 413 (423)
+...-..++..+.++.+.| +++||.||
T Consensus 77 ~TD~elAl~~a~e~g~d~i-~i~Ga~GG 103 (212)
T COG1564 77 STDLELALDEALERGADEI-VILGALGG 103 (212)
T ss_pred cchHHHHHHHHHHcCCCEE-EEEecCCC
Confidence 3333346777888887655 56788887
No 421
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.02 E-value=4.1e+02 Score=29.82 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE---SLIPETVEKAVA----SKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~---~~i~~~~~k~~~----~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
-++-+.+...++.+ .++|+.||.=-...|....++.. ++|++- -+.+. ..-.+|..+-|++..|...+-++
T Consensus 133 l~~A~~La~~f~~~-~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~L-N~~I~~~~~~~~ndLlDqRD~ll~eLS~~v~v 210 (624)
T PRK12714 133 LDSGNSLATRFKQL-NGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKI-NGTIGSSAQNAAPDLLDQRDALVSKLVGYTGG 210 (624)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCchhhHHHHHHHHHHHHhhcCe
Confidence 46667788888776 77888888777776665554322 222221 11221 12346888888888888888777
Q ss_pred hhhhccCCcEEEEEeccc
Q 014500 394 NPLTTHFRSVILFFFGGV 411 (423)
Q Consensus 394 n~~L~~~~~~~~~~~~~~ 411 (423)
+-.-..+..+-+|.-||.
T Consensus 211 ~v~~~~~G~~~V~~~~G~ 228 (624)
T PRK12714 211 TAVIQDGGFMNVFTAGGQ 228 (624)
T ss_pred EEEEcCCCcEEEEecCCc
Confidence 766666777777766653
Done!