Query 014500
Match_columns 423
No_of_seqs 343 out of 1703
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i50_A Ubiquitin carboxyl-term 99.9 1.3E-22 4.5E-27 177.6 3.8 108 185-294 3-121 (126)
2 2g45_A Ubiquitin carboxyl-term 99.8 4.8E-22 1.6E-26 174.7 6.0 84 196-279 2-106 (129)
3 3c5k_A HD6, histone deacetylas 99.8 4.7E-20 1.6E-24 157.7 6.8 63 218-280 24-86 (109)
4 2uzg_A Ubiquitin carboxyl-term 99.7 9E-19 3.1E-23 146.8 5.6 62 217-278 24-88 (97)
5 3ihp_A Ubiquitin carboxyl-term 99.7 6.3E-19 2.2E-23 195.4 2.9 110 165-278 156-286 (854)
6 2ida_A Hypothetical protein; z 99.7 2.6E-18 9E-23 145.1 4.5 75 206-280 5-87 (102)
7 3mhs_A Ubiquitin carboxyl-term 99.3 1.1E-12 3.9E-17 134.9 5.0 60 218-279 48-109 (476)
8 4ap4_A E3 ubiquitin ligase RNF 98.8 7.9E-10 2.7E-14 94.0 2.6 78 165-242 5-103 (133)
9 2ecm_A Ring finger and CHY zin 98.8 3.1E-09 1.1E-13 77.7 3.7 48 165-212 3-52 (55)
10 1iym_A EL5; ring-H2 finger, ub 98.8 3.6E-09 1.2E-13 77.5 4.0 48 164-212 2-52 (55)
11 2ecl_A Ring-box protein 2; RNF 98.7 5.5E-09 1.9E-13 83.6 3.5 49 165-213 13-74 (81)
12 1x4j_A Ring finger protein 38; 98.7 5.7E-09 1.9E-13 81.5 3.1 49 164-213 20-70 (75)
13 2ect_A Ring finger protein 126 98.7 1.1E-08 3.6E-13 80.3 4.6 52 161-213 9-62 (78)
14 2ep4_A Ring finger protein 24; 98.7 1.2E-08 4E-13 79.3 4.5 51 162-213 10-62 (74)
15 2ea6_A Ring finger protein 4; 98.7 6.9E-09 2.4E-13 78.9 2.9 54 160-213 8-66 (69)
16 2kiz_A E3 ubiquitin-protein li 98.7 1.4E-08 4.9E-13 77.8 4.4 49 164-213 11-61 (69)
17 2ct2_A Tripartite motif protei 98.6 1.9E-08 6.6E-13 80.1 4.7 53 161-213 9-66 (88)
18 2d8t_A Dactylidin, ring finger 98.6 1.9E-08 6.4E-13 77.9 4.5 47 163-213 11-59 (71)
19 2l0b_A E3 ubiquitin-protein li 98.6 9.7E-09 3.3E-13 83.7 2.6 49 164-213 37-87 (91)
20 2egp_A Tripartite motif-contai 98.6 1.5E-08 5.2E-13 79.2 3.2 50 160-213 5-63 (79)
21 2djb_A Polycomb group ring fin 98.6 2.2E-08 7.7E-13 77.6 3.9 49 161-213 9-60 (72)
22 2ecj_A Tripartite motif-contai 98.6 2.7E-08 9.1E-13 73.3 4.1 45 161-209 9-58 (58)
23 2ysl_A Tripartite motif-contai 98.6 3E-08 1E-12 76.5 4.4 48 162-213 15-67 (73)
24 1v87_A Deltex protein 2; ring- 98.6 1.3E-08 4.3E-13 85.5 2.4 47 167-213 25-92 (114)
25 2yur_A Retinoblastoma-binding 98.6 2.3E-08 8E-13 78.1 3.5 49 161-213 9-62 (74)
26 4ayc_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 88.1 2.8 43 166-212 52-96 (138)
27 3ng2_A RNF4, snurf, ring finge 98.6 1.4E-08 4.7E-13 77.9 1.8 49 165-213 8-61 (71)
28 2ecn_A Ring finger protein 141 98.6 2.9E-08 9.8E-13 76.3 3.5 47 162-213 10-58 (70)
29 1g25_A CDK-activating kinase a 98.6 2.3E-08 7.7E-13 76.0 2.5 48 166-213 2-53 (65)
30 2csy_A Zinc finger protein 183 98.5 4.4E-08 1.5E-12 77.5 4.2 47 163-213 11-59 (81)
31 2ysj_A Tripartite motif-contai 98.5 4.1E-08 1.4E-12 74.0 3.3 44 162-209 15-63 (63)
32 2xeu_A Ring finger protein 4; 98.5 2.4E-08 8.3E-13 74.7 2.0 48 166-213 2-54 (64)
33 1chc_A Equine herpes virus-1 r 98.5 3.5E-08 1.2E-12 75.2 2.7 45 166-213 4-50 (68)
34 2ecw_A Tripartite motif-contai 98.5 5.8E-08 2E-12 76.4 3.9 50 160-213 12-69 (85)
35 1t1h_A Gspef-atpub14, armadill 98.5 5.2E-08 1.8E-12 76.4 3.4 47 163-213 4-53 (78)
36 2ecy_A TNF receptor-associated 98.5 4.5E-08 1.5E-12 74.6 2.7 48 162-213 10-60 (66)
37 3ztg_A E3 ubiquitin-protein li 98.5 6.7E-08 2.3E-12 78.0 3.5 48 162-213 8-60 (92)
38 2ecv_A Tripartite motif-contai 98.5 9.7E-08 3.3E-12 75.1 4.3 49 161-213 13-69 (85)
39 3dpl_R Ring-box protein 1; ubi 98.5 7.4E-08 2.5E-12 81.5 3.5 48 165-212 35-98 (106)
40 1e4u_A Transcriptional repress 98.5 1E-07 3.5E-12 76.2 4.0 52 162-213 6-60 (78)
41 3lrq_A E3 ubiquitin-protein li 98.4 4.3E-08 1.5E-12 81.1 1.5 46 164-213 19-68 (100)
42 2d8s_A Cellular modulator of i 98.4 2.9E-07 1E-11 74.0 6.0 47 165-213 13-68 (80)
43 3fl2_A E3 ubiquitin-protein li 98.4 8.6E-08 2.9E-12 81.9 2.4 45 165-213 50-97 (124)
44 3l11_A E3 ubiquitin-protein li 98.4 8.1E-08 2.8E-12 80.9 2.1 46 164-213 12-60 (115)
45 1bor_A Transcription factor PM 98.4 1.7E-07 5.9E-12 69.7 3.4 44 165-213 4-47 (56)
46 1jm7_B BARD1, BRCA1-associated 98.4 1.3E-07 4.3E-12 80.3 2.9 46 164-213 19-65 (117)
47 2ckl_A Polycomb group ring fin 98.4 1.3E-07 4.3E-12 79.0 2.6 46 164-213 12-60 (108)
48 2y43_A E3 ubiquitin-protein li 98.4 9.1E-08 3.1E-12 78.5 1.6 45 165-213 20-67 (99)
49 1jm7_A BRCA1, breast cancer ty 98.3 2.1E-07 7E-12 77.4 2.0 45 165-213 19-68 (112)
50 1rmd_A RAG1; V(D)J recombinati 98.3 1.3E-07 4.4E-12 79.8 0.6 87 164-255 20-111 (116)
51 2ckl_B Ubiquitin ligase protei 98.2 1.8E-07 6.3E-12 83.6 1.2 46 163-212 50-99 (165)
52 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 81.0 0.4 47 166-212 47-109 (117)
53 1z6u_A NP95-like ring finger p 98.2 3.7E-07 1.3E-11 81.3 2.5 45 165-213 76-123 (150)
54 3hct_A TNF receptor-associated 98.2 4.6E-07 1.6E-11 76.9 2.7 47 163-213 14-63 (118)
55 4ic3_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 71.2 2.4 43 165-213 22-65 (74)
56 2kr4_A Ubiquitin conjugation f 98.2 1.2E-06 4.1E-11 70.7 4.1 47 163-213 10-58 (85)
57 3knv_A TNF receptor-associated 98.1 4.6E-07 1.6E-11 79.9 1.1 45 164-212 28-75 (141)
58 2kre_A Ubiquitin conjugation f 98.1 1.3E-06 4.4E-11 72.8 3.3 47 163-213 25-73 (100)
59 1wgm_A Ubiquitin conjugation f 98.1 2.2E-06 7.6E-11 71.2 4.5 47 163-213 18-67 (98)
60 4ap4_A E3 ubiquitin ligase RNF 98.1 9.7E-07 3.3E-11 74.7 1.6 49 165-213 70-123 (133)
61 2c2l_A CHIP, carboxy terminus 98.0 2E-06 6.9E-11 81.5 3.7 47 163-213 204-253 (281)
62 2yu4_A E3 SUMO-protein ligase 98.0 2E-06 6.9E-11 70.5 2.8 45 163-211 3-58 (94)
63 2y1n_A E3 ubiquitin-protein li 97.9 4.4E-06 1.5E-10 85.3 3.6 43 167-213 332-377 (389)
64 2ecg_A Baculoviral IAP repeat- 97.9 5.6E-06 1.9E-10 64.8 2.6 42 166-213 24-66 (75)
65 3hcs_A TNF receptor-associated 97.8 5.6E-06 1.9E-10 74.2 2.7 47 163-213 14-63 (170)
66 2ct0_A Non-SMC element 1 homol 97.8 1.1E-05 3.7E-10 64.2 3.0 45 165-212 13-61 (74)
67 2yho_A E3 ubiquitin-protein li 97.8 1.2E-05 4.2E-10 64.0 3.1 42 166-213 17-59 (79)
68 2vje_A E3 ubiquitin-protein li 97.7 8.6E-06 2.9E-10 62.2 1.5 44 165-212 6-54 (64)
69 3t6p_A Baculoviral IAP repeat- 97.7 1.7E-05 5.7E-10 79.8 3.5 43 165-213 293-336 (345)
70 2f42_A STIP1 homology and U-bo 97.7 1.8E-05 6E-10 72.9 2.9 47 163-213 102-151 (179)
71 2vje_B MDM4 protein; proto-onc 97.5 2E-05 6.8E-10 60.0 1.4 45 166-212 6-53 (63)
72 2ea5_A Cell growth regulator w 97.5 8.1E-05 2.8E-09 57.6 4.6 45 163-213 11-56 (68)
73 3htk_C E3 SUMO-protein ligase 97.5 5.4E-05 1.9E-09 73.5 4.2 47 162-212 176-229 (267)
74 1wim_A KIAA0161 protein; ring 97.3 5.4E-05 1.9E-09 61.5 1.2 46 165-212 3-61 (94)
75 3k1l_B Fancl; UBC, ring, RWD, 97.2 9.4E-05 3.2E-09 74.5 2.4 47 166-212 307-370 (381)
76 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00011 3.7E-09 55.8 1.7 45 165-213 4-57 (60)
77 2dgw_A Probable RNA-binding pr 96.9 0.0055 1.9E-07 48.2 9.0 70 62-134 7-76 (91)
78 2bay_A PRE-mRNA splicing facto 96.6 0.00061 2.1E-08 51.7 1.7 41 168-212 4-47 (61)
79 3bs9_A Nucleolysin TIA-1 isofo 96.5 0.015 5.1E-07 44.9 8.9 72 62-134 3-75 (87)
80 3vk6_A E3 ubiquitin-protein li 96.4 0.0011 3.9E-08 55.4 2.2 65 169-244 3-70 (101)
81 2dgv_A HnRNP M, heterogeneous 96.4 0.022 7.5E-07 44.5 9.3 71 63-135 6-76 (92)
82 2dng_A Eukaryotic translation 96.3 0.031 1E-06 44.9 10.2 73 59-134 9-82 (103)
83 2cq3_A RNA-binding protein 9; 96.3 0.031 1.1E-06 44.8 10.1 71 62-134 12-82 (103)
84 2dnh_A Bruno-like 5, RNA bindi 96.3 0.076 2.6E-06 42.5 12.4 70 64-134 14-83 (105)
85 2ywk_A Putative RNA-binding pr 96.2 0.03 1E-06 44.0 9.2 73 61-134 12-84 (95)
86 2dnz_A Probable RNA-binding pr 96.2 0.041 1.4E-06 43.2 10.0 70 64-134 4-74 (95)
87 2d9p_A Polyadenylate-binding p 96.1 0.047 1.6E-06 43.7 10.3 70 63-134 13-82 (103)
88 2cqc_A Arginine/serine-rich sp 96.1 0.037 1.3E-06 43.4 9.4 71 63-134 13-84 (95)
89 2jrs_A RNA-binding protein 39; 96.1 0.043 1.5E-06 45.0 10.0 74 61-135 22-96 (108)
90 2do4_A Squamous cell carcinoma 96.0 0.037 1.3E-06 44.1 9.3 70 64-134 16-85 (100)
91 2dgo_A Cytotoxic granule-assoc 96.0 0.056 1.9E-06 44.1 10.5 73 61-134 11-84 (115)
92 2fy1_A RNA-binding motif prote 96.0 0.038 1.3E-06 45.9 9.5 72 63-135 5-76 (116)
93 1oo0_B CG8781-PA, drosophila Y 96.0 0.031 1E-06 45.4 8.7 73 61-134 22-95 (110)
94 1wi8_A EIF-4B, eukaryotic tran 96.0 0.034 1.2E-06 44.7 8.8 73 59-134 9-83 (104)
95 1p27_B RNA-binding protein 8A; 96.0 0.062 2.1E-06 43.1 10.3 72 62-134 20-92 (106)
96 2e5h_A Zinc finger CCHC-type a 95.9 0.036 1.2E-06 43.4 8.5 71 63-134 14-85 (94)
97 2la6_A RNA-binding protein FUS 95.8 0.088 3E-06 41.8 10.7 74 60-134 8-90 (99)
98 2dnm_A SRP46 splicing factor; 95.8 0.044 1.5E-06 43.9 8.9 71 63-134 11-82 (103)
99 2do0_A HnRNP M, heterogeneous 95.8 0.069 2.4E-06 43.4 10.2 70 64-134 14-83 (114)
100 2cqi_A Nucleolysin TIAR; RNA r 95.8 0.057 1.9E-06 43.2 9.5 70 63-134 13-82 (103)
101 2cph_A RNA binding motif prote 95.8 0.065 2.2E-06 42.9 9.7 72 62-135 12-87 (107)
102 1x4e_A RNA binding motif, sing 95.8 0.029 1E-06 43.2 7.3 69 64-133 4-73 (85)
103 3mdf_A Peptidyl-prolyl CIS-tra 95.7 0.041 1.4E-06 42.2 7.9 70 64-134 6-76 (85)
104 1x5o_A RNA binding motif, sing 95.7 0.096 3.3E-06 42.6 10.6 70 64-134 24-93 (114)
105 2dhg_A TRNA selenocysteine ass 95.7 0.065 2.2E-06 42.8 9.4 71 64-134 8-79 (104)
106 3ulh_A THO complex subunit 4; 95.7 0.066 2.3E-06 43.0 9.4 72 62-134 26-97 (107)
107 3md1_A Nuclear and cytoplasmic 95.6 0.068 2.3E-06 40.7 8.9 68 66-134 2-70 (83)
108 2ytc_A PRE-mRNA-splicing facto 95.6 0.067 2.3E-06 41.1 8.7 66 63-134 10-76 (85)
109 2cq0_A Eukaryotic translation 95.6 0.084 2.9E-06 42.2 9.6 71 63-134 13-84 (103)
110 1whw_A Hypothetical protein ri 95.5 0.061 2.1E-06 42.6 8.6 70 64-134 7-77 (99)
111 3lqv_A PRE-mRNA branch site pr 95.5 0.069 2.4E-06 43.5 9.2 70 62-134 5-74 (115)
112 1x5s_A Cold-inducible RNA-bind 95.5 0.078 2.7E-06 42.2 9.2 71 63-134 10-81 (102)
113 2cpz_A CUG triplet repeat RNA- 95.5 0.077 2.6E-06 43.3 9.2 70 64-134 24-94 (115)
114 2err_A Ataxin-2-binding protei 95.4 0.049 1.7E-06 44.5 7.8 70 63-134 27-96 (109)
115 2x1f_A MRNA 3'-END-processing 95.3 0.06 2E-06 42.6 7.8 69 65-134 2-71 (96)
116 1x5u_A Splicing factor 3B subu 95.3 0.12 4.1E-06 41.3 9.8 71 63-134 13-84 (105)
117 2dgs_A DAZ-associated protein 95.2 0.17 5.7E-06 40.1 10.3 71 63-135 8-79 (99)
118 2kt5_A RNA and export factor-b 95.2 0.28 9.6E-06 40.6 12.1 71 63-134 33-103 (124)
119 2div_A TRNA selenocysteine ass 95.2 0.093 3.2E-06 41.5 8.7 72 63-135 7-80 (99)
120 3nmr_A Cugbp ELAV-like family 95.2 0.075 2.6E-06 45.4 8.7 69 64-133 2-73 (175)
121 2cpj_A Non-POU domain-containi 95.2 0.14 4.7E-06 40.7 9.7 66 63-134 13-78 (99)
122 3ex7_B RNA-binding protein 8A; 95.2 0.091 3.1E-06 43.5 8.9 74 61-135 18-92 (126)
123 2dgt_A RNA-binding protein 30; 95.2 0.085 2.9E-06 41.3 8.2 64 63-134 8-71 (92)
124 2dgp_A Bruno-like 4, RNA bindi 95.2 0.19 6.4E-06 40.2 10.4 72 60-132 8-80 (106)
125 2krb_A Eukaryotic translation 95.1 0.072 2.5E-06 40.8 7.5 67 66-134 2-74 (81)
126 1x5t_A Splicing factor 3B subu 95.1 0.066 2.2E-06 42.1 7.4 70 64-134 4-75 (96)
127 2kxn_B Transformer-2 protein h 95.1 0.11 3.8E-06 44.1 9.2 70 64-134 45-115 (129)
128 2fc9_A NCL protein; structure 95.1 0.088 3E-06 41.9 8.2 68 63-134 13-80 (101)
129 4a8x_A RNA-binding protein wit 95.1 0.064 2.2E-06 41.3 7.1 70 64-134 3-74 (88)
130 4fxv_A ELAV-like protein 1; RN 95.0 0.11 3.8E-06 41.9 8.8 70 64-134 18-88 (99)
131 1fxl_A Paraneoplastic encephal 95.0 0.095 3.2E-06 44.3 8.7 69 65-134 2-71 (167)
132 2dnp_A RNA-binding protein 14; 95.0 0.07 2.4E-06 41.6 7.3 63 64-134 8-70 (90)
133 3md3_A Nuclear and cytoplasmic 95.0 0.096 3.3E-06 44.2 8.7 67 67-134 2-68 (166)
134 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.0 0.11 3.7E-06 43.5 8.9 71 63-134 61-132 (140)
135 2j76_E EIF-4B, EIF4B, eukaryot 95.0 0.045 1.5E-06 43.9 6.1 71 62-135 16-88 (100)
136 1p1t_A Cleavage stimulation fa 94.9 0.049 1.7E-06 43.5 6.2 71 64-135 7-78 (104)
137 2cqb_A Peptidyl-prolyl CIS-tra 94.9 0.071 2.4E-06 42.5 7.1 70 64-134 11-81 (102)
138 3nmr_A Cugbp ELAV-like family 94.9 0.26 8.9E-06 42.0 11.2 70 64-134 94-163 (175)
139 2khc_A Testis-specific RNP-typ 94.9 0.14 4.8E-06 41.8 9.1 71 63-134 38-109 (118)
140 2cpe_A RNA-binding protein EWS 94.8 0.11 3.8E-06 42.2 8.2 72 63-134 13-92 (113)
141 2xs2_A Deleted in azoospermia- 94.8 0.065 2.2E-06 42.8 6.6 68 63-133 7-74 (102)
142 1rk8_A CG8781-PA, CG8781-PA pr 94.6 0.18 6E-06 44.2 9.6 72 62-134 69-141 (165)
143 1x4a_A Splicing factor, argini 94.6 0.24 8.2E-06 40.0 9.7 69 63-134 20-88 (109)
144 2cqd_A RNA-binding region cont 94.6 0.21 7.3E-06 40.7 9.4 69 63-133 15-84 (116)
145 2cpf_A RNA binding motif prote 94.5 0.11 3.7E-06 41.0 7.2 70 64-134 4-77 (98)
146 2hzc_A Splicing factor U2AF 65 94.5 0.11 3.9E-06 39.8 7.2 66 63-134 4-79 (87)
147 2la4_A Nuclear and cytoplasmic 94.5 0.15 5.1E-06 40.5 8.1 66 63-134 25-90 (101)
148 2fc8_A NCL protein; structure 94.4 0.21 7E-06 39.7 8.7 68 63-134 13-81 (102)
149 2dis_A Unnamed protein product 94.3 0.18 6.1E-06 40.5 8.3 71 64-134 7-81 (109)
150 3ucg_A Polyadenylate-binding p 94.3 0.24 8.4E-06 38.0 8.8 68 65-134 6-74 (89)
151 1b7f_A Protein (SXL-lethal pro 94.3 0.35 1.2E-05 41.0 10.5 70 64-134 88-158 (168)
152 2cpy_A RNA-binding protein 12; 94.3 0.15 5E-06 41.9 7.8 70 63-134 13-83 (114)
153 3md3_A Nuclear and cytoplasmic 94.2 0.34 1.2E-05 40.8 10.3 71 63-134 85-156 (166)
154 1h2v_Z 20 kDa nuclear CAP bind 94.2 0.26 8.9E-06 42.4 9.7 71 63-134 37-108 (156)
155 1x4g_A Nucleolysin TIAR; struc 94.2 0.15 5.2E-06 41.2 7.7 65 64-134 24-88 (109)
156 2dh8_A DAZ-associated protein 94.2 0.19 6.5E-06 40.2 8.2 70 63-134 14-84 (105)
157 2dgu_A Heterogeneous nuclear r 94.2 0.13 4.6E-06 41.1 7.2 63 64-134 10-72 (103)
158 1u6f_A Tcubp1, RNA-binding pro 94.1 0.29 1E-05 41.1 9.6 71 63-134 40-111 (139)
159 4f25_A Polyadenylate-binding p 94.1 0.2 6.9E-06 41.2 8.3 68 65-134 5-72 (115)
160 2jwn_A Embryonic polyadenylate 94.1 0.23 7.7E-06 41.0 8.6 69 64-134 35-104 (124)
161 1x4h_A RNA-binding protein 28; 94.0 0.31 1.1E-05 39.1 9.2 72 63-135 13-91 (111)
162 2lmi_A GRSF-1, G-rich sequence 93.9 0.2 6.9E-06 40.6 7.9 73 62-135 8-82 (107)
163 1fxl_A Paraneoplastic encephal 93.9 0.35 1.2E-05 40.7 9.7 70 64-134 87-157 (167)
164 2e44_A Insulin-like growth fac 93.8 0.44 1.5E-05 37.3 9.5 67 64-134 14-81 (96)
165 1why_A Hypothetical protein ri 93.8 0.23 7.9E-06 39.2 7.9 63 65-133 17-79 (97)
166 2db1_A Heterogeneous nuclear r 93.8 0.27 9.1E-06 40.8 8.6 71 63-134 15-87 (118)
167 3nw0_A Non-structural maintena 93.8 0.028 9.5E-07 53.5 2.8 44 166-212 179-226 (238)
168 2dnq_A RNA-binding protein 4B; 93.8 0.35 1.2E-05 37.5 8.8 64 64-135 7-70 (90)
169 2mss_A Protein (musashi1); RNA 93.8 0.19 6.4E-06 37.6 7.0 65 68-134 2-67 (75)
170 2g4b_A Splicing factor U2AF 65 93.7 0.26 8.8E-06 42.1 8.7 70 64-134 93-163 (172)
171 1wg1_A KIAA1579 protein, homol 93.7 0.13 4.6E-06 40.0 6.3 63 65-134 5-67 (88)
172 2dgx_A KIAA0430 protein; RRM d 93.7 0.23 8E-06 39.3 7.8 71 61-134 5-79 (96)
173 2cpd_A Apobec-1 stimulating pr 93.7 0.38 1.3E-05 38.0 9.0 65 63-134 13-78 (99)
174 2qfj_A FBP-interacting repress 93.7 0.24 8.1E-06 43.9 8.6 71 64-135 27-98 (216)
175 2cpi_A CCR4-NOT transcription 93.6 0.34 1.2E-05 39.5 8.9 71 63-134 13-90 (111)
176 1b7f_A Protein (SXL-lethal pro 93.6 0.16 5.5E-06 43.1 7.1 69 65-134 3-72 (168)
177 2kn4_A Immunoglobulin G-bindin 93.6 0.33 1.1E-05 41.6 9.2 71 63-134 68-139 (158)
178 1nu4_A U1A RNA binding domain; 93.6 0.09 3.1E-06 41.3 5.1 68 64-134 7-78 (97)
179 2cq4_A RNA binding motif prote 93.6 0.23 7.7E-06 40.4 7.6 69 64-134 24-93 (114)
180 1s79_A Lupus LA protein; RRM, 93.5 0.37 1.3E-05 39.3 8.8 70 64-135 10-79 (103)
181 2dnn_A RNA-binding protein 12; 93.5 0.22 7.5E-06 41.3 7.4 68 64-134 15-82 (109)
182 2qfj_A FBP-interacting repress 93.4 0.42 1.4E-05 42.3 9.8 69 65-134 125-194 (216)
183 2hvz_A Splicing factor, argini 93.4 0.17 5.7E-06 40.2 6.4 64 67-135 2-65 (101)
184 1wg5_A Heterogeneous nuclear r 93.4 0.37 1.3E-05 38.8 8.6 72 63-135 13-84 (104)
185 1x4c_A Splicing factor, argini 93.4 0.29 9.8E-06 39.6 7.9 66 62-134 12-77 (108)
186 3s7r_A Heterogeneous nuclear r 93.3 0.49 1.7E-05 36.3 8.8 69 63-133 9-78 (87)
187 2cqg_A TDP-43, TAR DNA-binding 93.2 0.63 2.2E-05 36.9 9.7 64 62-126 12-76 (103)
188 1l3k_A Heterogeneous nuclear r 93.2 0.39 1.3E-05 41.8 9.1 70 62-133 10-80 (196)
189 2lea_A Serine/arginine-rich sp 93.1 0.17 5.8E-06 43.2 6.4 72 63-135 45-117 (135)
190 3ns6_A Eukaryotic translation 93.1 0.16 5.6E-06 40.7 6.0 71 63-134 4-81 (100)
191 2ek1_A RNA-binding protein 12; 93.1 0.3 1E-05 38.1 7.4 69 65-134 15-84 (95)
192 2f3j_A RNA and export factor b 93.1 0.36 1.2E-05 43.2 8.7 71 63-134 86-156 (177)
193 2cqp_A RNA-binding protein 12; 93.1 0.52 1.8E-05 37.0 8.8 70 64-134 14-84 (98)
194 2ki2_A SS-DNA binding protein 92.9 0.26 9E-06 38.1 6.8 68 66-135 2-70 (90)
195 3p5t_L Cleavage and polyadenyl 92.8 0.29 9.8E-06 38.2 6.9 69 67-135 3-73 (90)
196 3s8s_A Histone-lysine N-methyl 92.8 0.63 2.2E-05 38.2 9.3 69 65-134 6-75 (110)
197 2nlw_A Eukaryotic translation 92.7 0.34 1.2E-05 39.0 7.4 70 63-134 13-88 (105)
198 1wez_A HnRNP H', FTP-3, hetero 92.6 0.59 2E-05 37.8 8.7 69 64-135 14-82 (102)
199 2lxi_A RNA-binding protein 10; 92.5 0.14 4.9E-06 40.5 4.8 69 65-133 1-71 (91)
200 3beg_B Splicing factor, argini 92.5 0.39 1.3E-05 39.5 7.6 70 64-140 15-84 (115)
201 3s9g_A Protein hexim1; cyclin 92.4 0.67 2.3E-05 38.5 8.7 71 325-409 33-103 (104)
202 2yh0_A Splicing factor U2AF 65 92.4 0.59 2E-05 40.7 9.1 71 63-134 112-183 (198)
203 2e5j_A Methenyltetrahydrofolat 92.4 0.81 2.8E-05 36.0 9.1 67 63-134 17-83 (97)
204 2i2y_A Fusion protein consists 92.2 0.7 2.4E-05 39.4 9.2 67 63-134 71-137 (150)
205 2cpx_A Hypothetical protein FL 92.2 1 3.4E-05 36.4 9.7 69 63-134 23-94 (115)
206 1fjc_A Nucleolin RBD2, protein 92.2 0.27 9.2E-06 38.5 6.0 67 63-134 14-80 (96)
207 2hgm_A HNRPF protein, heteroge 92.1 0.63 2.2E-05 39.7 8.7 69 63-134 40-110 (126)
208 3n9u_C Cleavage and polyadenyl 92.1 0.55 1.9E-05 41.2 8.5 71 64-134 54-126 (156)
209 1wf1_A RNA-binding protein RAL 92.1 0.6 2.1E-05 37.6 8.2 66 61-134 23-89 (110)
210 2hgl_A HNRPF protein, heteroge 92.1 0.41 1.4E-05 41.3 7.5 73 62-135 41-115 (136)
211 2jvo_A Nucleolar protein 3; nu 92.0 0.46 1.6E-05 38.7 7.5 64 63-134 29-92 (108)
212 1qm9_A Polypyrimidine tract-bi 92.0 0.55 1.9E-05 41.3 8.5 66 64-133 119-184 (198)
213 1uaw_A Mouse-musashi-1; RNP-ty 91.8 0.5 1.7E-05 35.2 6.9 66 67-134 2-68 (77)
214 2adc_A Polypyrimidine tract-bi 91.7 0.47 1.6E-05 43.4 7.8 67 63-134 32-99 (229)
215 2xnq_A Nuclear polyadenylated 91.5 0.91 3.1E-05 36.1 8.5 65 62-134 19-84 (97)
216 3smz_A Protein raver-1, ribonu 91.4 0.72 2.5E-05 43.0 9.0 71 63-134 182-253 (284)
217 1x4b_A Heterogeneous nuclear r 91.3 0.69 2.4E-05 37.6 7.8 69 64-134 26-95 (116)
218 2lkz_A RNA-binding protein 5; 91.2 0.52 1.8E-05 38.0 6.8 69 64-132 8-78 (95)
219 1wel_A RNA-binding protein 12; 90.9 1.1 3.8E-05 37.0 8.8 73 61-135 21-94 (124)
220 1qm9_A Polypyrimidine tract-bi 90.8 0.37 1.3E-05 42.4 6.1 65 65-134 3-68 (198)
221 3egn_A RNA-binding protein 40; 90.8 1.1 3.7E-05 37.9 8.7 70 63-134 43-119 (143)
222 2cqh_A IGF-II mRNA-binding pro 90.6 0.56 1.9E-05 36.5 6.3 65 64-134 7-72 (93)
223 1whx_A Hypothetical protein ri 90.6 0.72 2.5E-05 37.7 7.2 65 65-135 10-74 (111)
224 3q2s_C Cleavage and polyadenyl 90.6 0.96 3.3E-05 42.0 8.9 72 63-134 66-139 (229)
225 1l3k_A Heterogeneous nuclear r 90.6 1.7 5.8E-05 37.7 10.1 69 64-134 103-172 (196)
226 4f02_A Polyadenylate-binding p 90.5 0.86 2.9E-05 41.1 8.3 68 65-134 103-170 (213)
227 3r27_A HnRNP L, heterogeneous 90.4 0.96 3.3E-05 37.3 7.8 63 64-132 20-82 (100)
228 2ghp_A U4/U6 snRNA-associated 90.3 0.81 2.8E-05 42.9 8.3 69 64-134 209-280 (292)
229 2adc_A Polypyrimidine tract-bi 90.3 1.3 4.4E-05 40.4 9.4 66 64-133 150-215 (229)
230 2cjk_A Nuclear polyadenylated 89.8 0.71 2.4E-05 39.1 6.8 68 64-132 2-73 (167)
231 2jun_A Midline-1; B-BOX, TRIM, 89.7 0.55 1.9E-05 37.8 5.7 35 166-202 2-38 (101)
232 3smz_A Protein raver-1, ribonu 89.6 1.3 4.5E-05 41.2 9.1 70 64-134 94-164 (284)
233 2kvi_A Nuclear polyadenylated 89.5 1.7 6E-05 34.0 8.5 63 64-134 9-72 (96)
234 4f02_A Polyadenylate-binding p 89.0 1.6 5.5E-05 39.2 9.0 72 62-134 12-84 (213)
235 1wex_A Hypothetical protein (r 89.0 2.3 7.8E-05 34.7 9.1 62 64-131 14-75 (104)
236 1iqt_A AUF1, heterogeneous nuc 88.9 0.61 2.1E-05 34.6 5.1 65 68-134 2-67 (75)
237 1uw4_A UPF3X; nonsense mediate 88.8 1.4 4.8E-05 35.9 7.5 67 68-135 4-73 (91)
238 2ghp_A U4/U6 snRNA-associated 88.6 0.71 2.4E-05 43.3 6.5 71 64-134 116-186 (292)
239 2cjk_A Nuclear polyadenylated 88.4 1.3 4.5E-05 37.3 7.5 69 65-135 87-156 (167)
240 3sde_A Paraspeckle component 1 88.4 1.4 4.7E-05 41.1 8.3 66 63-134 20-85 (261)
241 1fje_B Nucleolin RBD12, protei 88.3 1.1 3.6E-05 38.4 6.9 66 64-134 98-163 (175)
242 2rs2_A Musashi-1, RNA-binding 88.2 1.1 3.7E-05 36.4 6.6 69 63-133 23-92 (109)
243 3sde_A Paraspeckle component 1 88.0 2.5 8.5E-05 39.3 9.8 68 64-132 95-162 (261)
244 2g4b_A Splicing factor U2AF 65 87.7 1.6 5.6E-05 36.9 7.7 65 64-134 3-77 (172)
245 2e5g_A U6 snRNA-specific termi 87.5 3.4 0.00012 32.1 8.9 65 64-134 7-71 (94)
246 1fj7_A Nucleolin RBD1, protein 87.2 0.57 1.9E-05 37.0 4.1 67 64-134 16-84 (101)
247 2voo_A Lupus LA protein; RNA-b 87.1 2.1 7.2E-05 38.6 8.4 67 65-133 109-175 (193)
248 2dha_A FLJ20171 protein; RRM d 86.9 1.4 4.7E-05 37.3 6.6 71 63-134 21-94 (123)
249 2cq1_A PTB-like protein L; RRM 86.8 2.9 0.0001 33.9 8.4 60 64-129 14-73 (101)
250 2jvr_A Nucleolar protein 3; RN 86.6 1.5 5E-05 36.4 6.5 68 64-134 27-94 (111)
251 3trt_A Vimentin; cytoskeleton, 86.5 8.4 0.00029 29.7 10.5 69 321-391 8-76 (77)
252 2dnl_A Cytoplasmic polyadenyla 86.2 1.2 4.1E-05 36.3 5.7 67 64-132 7-80 (114)
253 1sjr_A Polypyrimidine tract-bi 86.0 3.1 0.00011 37.3 8.7 68 63-134 44-111 (164)
254 3pgw_A U1-A; protein-RNA compl 85.8 2 6.7E-05 40.0 7.7 65 64-133 206-270 (282)
255 2e5i_A Heterogeneous nuclear r 85.5 6.3 0.00022 33.4 10.1 64 66-134 26-89 (124)
256 3pgw_A U1-A; protein-RNA compl 85.4 2.9 9.9E-05 38.8 8.7 68 64-134 8-79 (282)
257 2m2b_A RNA-binding protein 10; 85.3 1.6 5.4E-05 36.5 6.1 66 63-130 21-89 (131)
258 2a3j_A U1 small nuclear ribonu 84.8 5 0.00017 33.9 9.2 69 64-135 28-100 (127)
259 2lcw_A RNA-binding protein FUS 84.9 0.19 6.4E-06 41.1 0.0 70 64-134 6-84 (116)
260 1x4d_A Matrin 3; structural ge 84.4 2.5 8.6E-05 34.5 6.9 62 64-131 14-76 (102)
261 1wf0_A TDP-43, TAR DNA-binding 84.2 1.6 5.4E-05 33.6 5.3 54 64-122 4-57 (88)
262 2hgn_A Heterogeneous nuclear r 83.9 1 3.6E-05 38.9 4.5 70 63-135 44-113 (139)
263 3ghg_A Fibrinogen alpha chain; 83.1 2.8 9.4E-05 44.1 7.9 77 320-398 62-159 (562)
264 3pgw_S U1-70K; protein-RNA com 82.8 2.7 9.1E-05 43.0 7.7 69 65-134 102-171 (437)
265 3tyt_A Heterogeneous nuclear r 82.8 4.1 0.00014 36.9 8.3 75 65-140 123-198 (205)
266 2pe8_A Splicing factor 45; RRM 82.3 7.6 0.00026 31.5 9.0 69 65-134 8-83 (105)
267 2yh0_A Splicing factor U2AF 65 82.2 3 0.0001 36.1 6.9 64 65-134 4-77 (198)
268 1x5p_A Negative elongation fac 81.4 11 0.00037 29.3 9.3 63 64-134 14-76 (97)
269 2l08_A Regulator of nonsense t 80.8 1.3 4.3E-05 36.8 3.6 70 65-135 9-81 (97)
270 1sjq_A Polypyrimidine tract-bi 79.9 6.3 0.00021 32.5 7.7 60 64-129 15-74 (105)
271 3d2w_A TAR DNA-binding protein 79.6 4.8 0.00017 31.3 6.6 60 64-132 10-69 (89)
272 2l9w_A U4/U6 snRNA-associated- 79.1 5.9 0.0002 33.8 7.2 67 62-133 18-88 (117)
273 2ffw_A Midline-1; B-BOX, ring 78.9 1.3 4.3E-05 34.8 2.9 40 217-260 29-75 (78)
274 2ad9_A Polypyrimidine tract-bi 78.8 5 0.00017 33.8 6.9 61 64-130 30-90 (119)
275 2bz2_A Negative elongation fac 78.3 9.5 0.00032 31.5 8.4 64 63-134 37-100 (121)
276 3v43_A Histone acetyltransfera 76.5 3.9 0.00013 34.0 5.4 48 164-211 2-63 (112)
277 2cq2_A Hypothetical protein LO 75.4 4.2 0.00014 34.1 5.4 66 65-136 25-93 (114)
278 1x4f_A Matrin 3; structural ge 75.1 5.6 0.00019 33.2 6.1 61 65-131 25-86 (112)
279 3v4m_A Splicing factor U2AF 65 73.5 6.8 0.00023 31.8 6.1 69 65-134 5-86 (105)
280 2ysm_A Myeloid/lymphoid or mix 72.5 6.8 0.00023 32.2 5.9 37 165-202 5-41 (111)
281 1jmt_A Splicing factor U2AF 35 72.5 7.1 0.00024 31.5 6.0 44 91-134 52-95 (104)
282 1fje_B Nucleolin RBD12, protei 72.4 1.9 6.4E-05 36.8 2.6 69 63-134 11-80 (175)
283 2kwj_A Zinc finger protein DPF 72.1 4.8 0.00017 33.6 5.0 43 168-210 2-59 (114)
284 3zzy_A Polypyrimidine tract-bi 72.0 31 0.0011 29.4 10.2 67 64-134 27-93 (130)
285 2lri_C Autoimmune regulator; Z 71.7 6.3 0.00021 30.0 5.1 44 164-211 9-58 (66)
286 1f5n_A Interferon-induced guan 70.5 19 0.00067 38.3 10.3 62 334-395 512-584 (592)
287 3na7_A HP0958; flagellar bioge 69.7 23 0.00078 33.3 9.7 52 368-419 147-209 (256)
288 3tyt_A Heterogeneous nuclear r 69.5 13 0.00044 33.5 7.6 66 64-134 3-69 (205)
289 2w83_C C-JUN-amino-terminal ki 68.4 27 0.00094 27.6 8.1 66 321-388 8-75 (77)
290 3swk_A Vimentin; cytoskeleton, 67.5 38 0.0013 27.0 9.2 69 320-393 5-85 (86)
291 2xzr_A Immunoglobulin-binding 67.2 33 0.0011 28.4 8.7 33 368-400 59-92 (114)
292 3s6e_A RNA-binding protein 39; 65.7 19 0.00065 29.8 7.3 67 65-135 7-83 (114)
293 1uii_A Geminin; human, DNA rep 63.8 18 0.00061 29.1 6.3 27 372-398 47-73 (83)
294 2j8a_A Histone-lysine N-methyl 62.7 20 0.00068 31.3 7.0 68 66-134 3-85 (136)
295 1hjb_A Ccaat/enhancer binding 61.8 18 0.00062 29.2 6.2 41 368-414 47-87 (87)
296 2jun_A Midline-1; B-BOX, TRIM, 60.4 6.3 0.00021 31.4 3.3 41 217-261 2-49 (101)
297 1x4w_A Hypothetical protein FL 60.4 5.1 0.00017 31.0 2.5 26 217-243 14-44 (67)
298 3t98_B Nucleoporin NUP58/NUP45 59.7 69 0.0024 26.0 9.6 63 329-391 7-85 (93)
299 1wg2_A Zinc finger (AN1-like) 59.2 6.8 0.00023 30.1 3.0 25 217-242 14-40 (64)
300 3ihp_A Ubiquitin carboxyl-term 59.2 4.7 0.00016 44.8 3.0 34 227-264 59-92 (854)
301 4fla_A Regulation of nuclear P 58.8 66 0.0023 28.3 9.9 60 327-392 83-142 (152)
302 3etw_A Adhesin A; antiparallel 58.4 37 0.0013 29.0 7.8 32 320-353 7-38 (119)
303 2dit_A HIV TAT specific factor 58.3 55 0.0019 26.1 8.7 67 64-134 14-91 (112)
304 1wil_A KIAA1045 protein; ring 58.3 20 0.0007 29.0 5.8 41 160-202 8-48 (89)
305 3oja_B Anopheles plasmodium-re 58.0 56 0.0019 33.6 10.8 19 372-390 552-570 (597)
306 1go4_E MAD1 (mitotic arrest de 57.7 15 0.0005 30.6 5.0 30 373-402 70-99 (100)
307 3ljm_A Coil Ser L9C; de novo d 57.4 14 0.00048 23.7 3.7 16 368-383 12-27 (31)
308 3cvf_A Homer-3, homer protein 56.8 18 0.0006 28.9 5.2 65 320-398 11-76 (79)
309 1wt6_A Myotonin-protein kinase 56.7 65 0.0022 25.7 8.4 31 368-398 42-73 (81)
310 1owx_A Lupus LA protein, SS-B, 56.5 48 0.0016 28.0 8.3 64 64-133 17-84 (121)
311 3u1l_A PRE-mRNA-splicing facto 56.1 26 0.00087 33.1 7.2 64 63-132 132-204 (240)
312 1wfh_A Zinc finger (AN1-like) 56.0 8 0.00027 29.7 2.9 25 217-242 14-40 (64)
313 1wlq_A Geminin; coiled-coil; 2 55.8 25 0.00084 28.3 5.9 25 374-398 41-65 (83)
314 3trt_A Vimentin; cytoskeleton, 55.1 61 0.0021 24.7 8.1 60 335-394 7-73 (77)
315 3tht_A Alkylated DNA repair pr 54.8 41 0.0014 33.4 8.7 83 65-153 18-104 (345)
316 3ol1_A Vimentin; structural ge 54.4 95 0.0033 26.0 10.6 22 372-393 84-105 (119)
317 2avr_X Adhesion A; antiparalle 53.6 1E+02 0.0036 26.2 10.4 22 320-343 7-28 (119)
318 1wfp_A Zinc finger (AN1-like) 51.7 9.6 0.00033 30.0 2.8 25 217-242 24-50 (74)
319 3o36_A Transcription intermedi 51.1 14 0.00048 32.9 4.3 44 166-213 3-52 (184)
320 2jee_A YIIU; FTSZ, septum, coi 50.5 94 0.0032 24.8 8.5 69 321-403 12-81 (81)
321 3f1i_H Hepatocyte growth facto 49.9 43 0.0015 27.6 6.6 19 336-354 54-72 (98)
322 1we9_A PHD finger family prote 49.9 15 0.00053 27.0 3.7 36 165-200 4-39 (64)
323 1t3j_A Mitofusin 1; coiled coi 49.5 44 0.0015 27.5 6.6 47 347-395 42-89 (96)
324 3ue2_A Poly(U)-binding-splicin 49.3 24 0.00081 29.3 5.2 70 65-135 20-99 (118)
325 3u5n_A E3 ubiquitin-protein li 49.0 11 0.00037 34.5 3.2 44 166-213 6-55 (207)
326 3d5a_X RF1, peptide chain rele 48.4 1.5E+02 0.005 29.7 11.5 90 322-414 29-118 (354)
327 1x8y_A Lamin A/C; structural p 48.0 16 0.00056 29.1 3.8 7 347-353 16-22 (86)
328 4gne_A Histone-lysine N-methyl 47.5 30 0.001 28.8 5.4 63 164-242 12-81 (107)
329 3vem_A Helicase protein MOM1; 47.4 1.3E+02 0.0044 25.5 9.5 56 343-399 52-110 (115)
330 3tnu_A Keratin, type I cytoske 47.4 77 0.0026 26.8 8.2 22 340-361 58-79 (131)
331 2zxx_A Geminin; coiled-coil, c 47.0 40 0.0014 26.8 5.8 24 374-397 37-60 (79)
332 1wff_A Riken cDNA 2810002D23 p 46.5 15 0.0005 29.7 3.2 26 217-243 24-52 (85)
333 3n7n_E Monopolin complex subun 46.1 25 0.00086 28.8 4.6 17 337-353 14-30 (95)
334 1m1j_B Fibrinogen beta chain; 45.6 97 0.0033 32.1 10.0 36 361-396 158-194 (464)
335 1deq_A Fibrinogen (alpha chain 45.5 95 0.0032 31.4 9.6 23 372-394 135-158 (390)
336 2wvr_A Geminin; DNA replicatio 45.2 30 0.001 32.1 5.5 21 375-395 119-139 (209)
337 2wbr_A GW182, gawky, LD47780P; 44.9 80 0.0027 25.4 7.4 64 65-134 7-70 (89)
338 1fxk_A Prefoldin; archaeal pro 44.7 1.2E+02 0.004 24.1 8.8 19 337-355 25-43 (107)
339 2dfs_A Myosin-5A; myosin-V, in 43.8 97 0.0033 35.3 10.6 18 374-391 1019-1036(1080)
340 3oja_A Leucine-rich immune mol 43.1 48 0.0016 33.4 7.3 19 373-391 437-455 (487)
341 3oja_B Anopheles plasmodium-re 42.4 1.2E+02 0.0042 31.0 10.5 27 370-396 557-584 (597)
342 3lqh_A Histone-lysine N-methyl 42.3 12 0.00041 34.1 2.4 31 169-199 4-37 (183)
343 1lwu_B Fibrinogen beta chain; 41.4 39 0.0013 33.4 6.1 49 335-391 7-55 (323)
344 2akf_A Coronin-1A; coiled coil 41.4 53 0.0018 21.4 4.6 22 368-389 10-31 (32)
345 3dxb_A Thioredoxin N-terminall 41.2 56 0.0019 29.1 6.8 54 81-135 145-203 (222)
346 1rrp_B Nuclear pore complex pr 40.7 81 0.0028 26.8 7.3 101 21-128 21-129 (134)
347 3hnw_A Uncharacterized protein 40.0 1.8E+02 0.0062 25.0 10.7 26 369-394 108-134 (138)
348 3fd9_A Uncharacterized protein 39.0 65 0.0022 30.8 6.8 31 334-365 131-161 (256)
349 1ci6_A Transcription factor AT 38.7 86 0.0029 23.4 6.3 27 367-393 33-59 (63)
350 1m1j_A Fibrinogen alpha subuni 38.7 2.2E+02 0.0075 29.6 11.2 56 341-397 100-159 (491)
351 3tnu_B Keratin, type II cytosk 38.4 1.3E+02 0.0044 25.3 8.2 20 340-359 56-75 (129)
352 1mm2_A MI2-beta; PHD, zinc fin 38.3 28 0.00095 25.7 3.5 32 165-200 7-38 (61)
353 1gk4_A Vimentin; intermediate 38.2 55 0.0019 25.8 5.4 22 339-360 6-27 (84)
354 2zqm_A Prefoldin beta subunit 37.8 1.6E+02 0.0053 23.7 9.1 31 368-398 81-112 (117)
355 3ok8_A Brain-specific angiogen 37.4 1.8E+02 0.0061 27.2 9.6 61 330-390 82-145 (222)
356 3mov_A Lamin-B1; LMNB1, B-type 37.2 22 0.00076 29.0 3.0 19 338-356 34-52 (95)
357 3lo3_A Uncharacterized conserv 37.0 21 0.00072 28.6 2.8 21 106-126 52-72 (94)
358 2dnr_A Synaptojanin-1; RRM dom 37.0 1.2E+02 0.004 24.6 7.3 60 66-134 8-75 (91)
359 3r2p_A Apolipoprotein A-I; amp 36.5 2.2E+02 0.0077 25.1 11.4 77 322-400 96-182 (185)
360 3o0z_A RHO-associated protein 35.8 2.4E+02 0.0083 25.3 11.0 30 368-397 115-145 (168)
361 2a20_A Regulating synaptic mem 35.5 14 0.00049 28.0 1.4 37 165-202 7-44 (62)
362 2v71_A Nuclear distribution pr 35.2 2.6E+02 0.0089 25.5 11.3 30 366-395 125-155 (189)
363 2xb1_A Pygopus homolog 2, B-ce 35.2 13 0.00045 30.7 1.3 33 167-199 3-36 (105)
364 3mtu_A Tropomyosin alpha-1 cha 34.4 74 0.0025 24.7 5.5 37 320-356 7-45 (75)
365 3vp9_A General transcriptional 33.9 49 0.0017 27.0 4.5 67 320-395 12-86 (92)
366 3lcn_C MRNA transport factor G 33.3 39 0.0013 21.8 2.9 17 333-349 9-25 (29)
367 2yql_A PHD finger protein 21A; 33.3 26 0.00089 25.3 2.6 33 164-200 6-38 (56)
368 1zbt_A RF-1, peptide chain rel 33.3 93 0.0032 31.4 7.4 39 370-414 93-136 (371)
369 2r2v_A GCN4 leucine zipper; co 33.2 44 0.0015 22.5 3.3 20 372-391 2-21 (34)
370 2fzt_A Hypothetical protein TM 32.7 1.3E+02 0.0045 23.7 6.5 69 321-398 8-78 (79)
371 3qh9_A Liprin-beta-2; coiled-c 32.7 1.9E+02 0.0064 23.1 8.9 55 321-391 18-74 (81)
372 1xke_A RAN-binding protein 2; 32.2 1.2E+02 0.0041 25.6 7.0 87 36-129 24-116 (130)
373 2fiu_A Conserved hypothetical 31.6 37 0.0013 27.4 3.5 19 107-125 54-72 (99)
374 2yt5_A Metal-response element- 31.5 31 0.0011 25.4 2.8 36 165-200 4-40 (66)
375 2l43_A N-teminal domain from h 31.5 31 0.0011 27.5 2.9 38 162-199 20-58 (88)
376 2wq1_A General control protein 31.4 50 0.0017 22.0 3.3 19 373-391 2-20 (33)
377 1x62_A C-terminal LIM domain p 31.3 55 0.0019 24.6 4.3 39 163-211 11-49 (79)
378 3v43_A Histone acetyltransfera 31.0 31 0.0011 28.4 3.0 32 169-200 63-94 (112)
379 2l5u_A Chromodomain-helicase-D 30.9 36 0.0012 25.1 3.0 32 165-200 9-40 (61)
380 3cve_A Homer protein homolog 1 30.5 1.9E+02 0.0065 22.5 9.2 63 320-396 5-68 (72)
381 1fxk_C Protein (prefoldin); ar 30.5 2.3E+02 0.0079 23.4 9.0 28 368-395 19-46 (133)
382 2w6a_A ARF GTPase-activating p 30.4 1.8E+02 0.006 22.0 7.6 7 328-334 12-18 (63)
383 1deq_A Fibrinogen (alpha chain 30.2 96 0.0033 31.4 6.8 46 336-383 115-160 (390)
384 3c3f_A Alpha/beta peptide with 30.0 54 0.0019 22.0 3.3 19 373-391 3-21 (34)
385 1xwh_A Autoimmune regulator; P 29.7 40 0.0014 25.1 3.2 32 165-200 6-37 (66)
386 2dj7_A Actin-binding LIM prote 29.7 51 0.0018 25.1 3.9 45 158-211 6-50 (80)
387 1kd8_B GABH BLL, GCN4 acid bas 29.4 55 0.0019 22.2 3.3 22 372-393 9-30 (36)
388 2vpb_A Hpygo1, pygopus homolog 29.4 27 0.00092 26.3 2.1 35 165-199 6-41 (65)
389 3ghg_A Fibrinogen alpha chain; 29.3 2.9E+02 0.01 29.1 10.4 75 323-398 50-145 (562)
390 3kg0_A Snoab; polyketide, anth 29.1 2.4E+02 0.0083 23.3 8.4 59 65-125 24-88 (128)
391 3s4r_A Vimentin; alpha-helix, 28.6 2.3E+02 0.0078 22.7 8.2 20 372-391 57-76 (93)
392 1wfl_A Zinc finger protein 216 28.3 38 0.0013 26.6 2.8 24 218-242 25-50 (74)
393 2ke4_A CDC42-interacting prote 28.2 74 0.0025 26.0 4.7 21 370-390 61-81 (98)
394 1g6u_A Domain swapped dimer; d 28.1 1.5E+02 0.0053 20.6 5.7 26 366-391 22-47 (48)
395 2csz_A Synaptotagmin-like prot 28.0 21 0.00071 28.2 1.3 48 165-238 23-72 (76)
396 1wwh_A Nucleoporin 35, nucleop 27.9 1.3E+02 0.0043 25.6 6.3 64 63-134 22-85 (119)
397 2ko5_A Ring finger protein Z; 27.8 53 0.0018 27.1 3.7 49 159-212 20-70 (99)
398 3c3g_A Alpha/beta peptide with 27.8 63 0.0021 21.6 3.3 18 374-391 3-20 (33)
399 2p2u_A HOST-nuclease inhibitor 27.7 2.2E+02 0.0074 25.2 8.2 76 324-412 18-94 (171)
400 2ku3_A Bromodomain-containing 27.7 39 0.0013 25.9 2.8 38 163-200 12-50 (71)
401 1fp0_A KAP-1 corepressor; PHD 27.6 64 0.0022 25.9 4.2 43 165-211 23-71 (88)
402 3s84_A Apolipoprotein A-IV; fo 27.5 4E+02 0.014 25.3 10.5 23 321-343 50-72 (273)
403 1f62_A Transcription factor WS 27.4 50 0.0017 23.1 3.2 31 169-200 2-32 (51)
404 3vkg_A Dynein heavy chain, cyt 27.3 1.3E+02 0.0045 38.4 8.7 30 367-396 2038-2068(3245)
405 1wle_A Seryl-tRNA synthetase; 27.2 2E+02 0.007 29.8 9.0 25 372-396 124-149 (501)
406 2xzl_A ATP-dependent helicase 27.1 43 0.0015 36.8 4.0 78 218-295 11-101 (802)
407 2k0a_A PRE-mRNA-splicing facto 26.8 11 0.00038 31.6 -0.5 35 203-237 29-64 (109)
408 1yuz_A Nigerythrin; rubrythrin 26.6 17 0.00059 33.3 0.7 10 229-238 185-194 (202)
409 2k16_A Transcription initiatio 26.3 37 0.0013 25.7 2.5 35 165-200 16-50 (75)
410 2akl_A PHNA-like protein PA012 26.3 33 0.0011 29.9 2.3 22 218-239 27-53 (138)
411 2jrp_A Putative cytoplasmic pr 26.3 18 0.00061 28.9 0.6 12 168-179 3-14 (81)
412 2oxj_A Hybrid alpha/beta pepti 26.3 69 0.0023 21.5 3.3 19 373-391 3-21 (34)
413 1s1c_X RHO-associated, coiled- 26.1 2.3E+02 0.0079 22.0 7.9 27 320-346 4-30 (71)
414 1l8d_A DNA double-strand break 26.0 2.5E+02 0.0086 22.4 10.2 26 369-394 76-102 (112)
415 3he5_B Synzip2; heterodimeric 25.9 1.8E+02 0.0061 20.6 6.2 13 344-356 6-18 (52)
416 1z5z_A Helicase of the SNF2/RA 25.7 1.3E+02 0.0046 28.0 6.8 15 341-355 40-54 (271)
417 1tjl_A DNAK suppressor protein 25.6 2.2E+02 0.0075 24.8 7.7 17 384-400 90-106 (151)
418 2ro1_A Transcription intermedi 25.6 30 0.001 31.2 2.1 41 168-212 3-49 (189)
419 3qne_A Seryl-tRNA synthetase, 25.5 2.3E+02 0.008 29.4 9.0 28 371-398 78-106 (485)
420 2oqq_A Transcription factor HY 25.4 1.6E+02 0.0055 20.6 5.3 27 367-393 13-39 (42)
421 3iox_A AGI/II, PA; alpha helix 25.2 3.5E+02 0.012 28.2 10.2 39 317-356 4-42 (497)
422 1k5d_B RAN-specific GTPase-act 25.1 2.5E+02 0.0084 25.8 8.2 88 35-129 63-157 (201)
423 3azd_A Short alpha-tropomyosin 24.7 48 0.0016 22.4 2.5 25 367-391 7-31 (37)
424 2e6r_A Jumonji/ARID domain-con 24.3 47 0.0016 26.6 2.8 36 163-199 12-47 (92)
425 1l4a_C S-SNAP25 fusion protein 24.3 2.6E+02 0.009 22.0 8.0 36 366-401 40-75 (83)
426 2w6a_A ARF GTPase-activating p 24.2 2.3E+02 0.0079 21.3 6.3 23 375-397 38-60 (63)
427 1tz0_A Hypothetical protein; s 24.1 1.1E+02 0.0039 24.7 5.2 56 70-126 13-75 (114)
428 3cvf_A Homer-3, homer protein 23.9 2.7E+02 0.0092 22.0 9.3 21 337-357 2-22 (79)
429 2kpi_A Uncharacterized protein 23.6 39 0.0013 24.8 2.0 19 162-180 5-23 (56)
430 1ugo_A BCL2-associated athanog 23.4 1.7E+02 0.0059 24.0 6.1 63 319-383 15-92 (99)
431 2j69_A Bacterial dynamin-like 23.3 4.8E+02 0.017 27.8 11.4 31 324-354 605-635 (695)
432 2z5i_A TM, general control pro 23.1 1.2E+02 0.0041 21.9 4.5 11 374-384 15-25 (52)
433 2lf0_A Uncharacterized protein 23.1 1.4E+02 0.0049 25.4 5.6 12 380-391 45-56 (123)
434 3mq9_A Bone marrow stromal ant 23.1 5.5E+02 0.019 25.3 11.3 12 379-390 444-455 (471)
435 3mq9_A Bone marrow stromal ant 22.9 5.1E+02 0.017 25.6 10.9 20 372-391 444-463 (471)
436 1gqe_A Release factor 2, RF2; 22.7 4E+02 0.014 26.6 9.8 14 401-414 126-139 (365)
437 2puy_A PHD finger protein 21A; 22.7 44 0.0015 24.3 2.2 31 166-200 4-34 (60)
438 2ri7_A Nucleosome-remodeling f 22.6 26 0.00089 30.7 1.0 34 165-199 6-39 (174)
439 1ic2_A Tropomyosin alpha chain 22.5 2.7E+02 0.0091 21.4 10.8 63 321-390 5-67 (81)
440 2v71_A Nuclear distribution pr 22.5 4.4E+02 0.015 24.0 9.8 12 323-334 25-36 (189)
441 1iuj_A Hypothetical protein TT 22.5 1.2E+02 0.0041 23.3 4.9 48 79-126 15-68 (106)
442 2hy6_A General control protein 22.4 75 0.0026 21.3 2.9 20 372-391 2-21 (34)
443 1gmj_A ATPase inhibitor; coile 22.4 3E+02 0.01 22.0 7.9 21 371-391 58-78 (84)
444 2ykt_A Brain-specific angiogen 22.1 4.2E+02 0.014 24.9 9.4 16 343-358 98-113 (253)
445 3opc_A Uncharacterized protein 22.0 3.5E+02 0.012 22.8 8.2 28 372-399 89-116 (154)
446 2kgg_A Histone demethylase jar 21.8 53 0.0018 23.3 2.4 28 169-199 4-35 (52)
447 4dzn_A Coiled-coil peptide CC- 21.8 1.2E+02 0.004 19.7 3.7 20 374-393 5-25 (33)
448 2diu_A KIAA0430 protein; struc 21.4 3.3E+02 0.011 22.1 8.2 63 64-135 8-74 (96)
449 3v6i_B V-type ATP synthase, su 21.3 3.2E+02 0.011 22.7 7.2 35 330-364 13-47 (105)
450 3mq7_A Bone marrow stromal ant 21.3 3.8E+02 0.013 22.7 9.9 12 330-341 25-36 (121)
451 1ufw_A Synaptojanin 2; RNP dom 21.3 1.4E+02 0.0049 24.3 5.1 61 65-134 15-84 (95)
452 2yy0_A C-MYC-binding protein; 21.3 1.3E+02 0.0046 21.8 4.5 27 368-394 23-50 (53)
453 1ses_A Seryl-tRNA synthetase; 21.2 2.3E+02 0.008 28.5 7.9 29 369-397 69-98 (421)
454 3sja_C Golgi to ER traffic pro 21.1 97 0.0033 23.7 3.8 24 372-395 33-57 (65)
455 1rq0_A RF-1, peptide chain rel 21.0 72 0.0025 31.8 4.0 39 372-414 61-99 (342)
456 2bni_A General control protein 21.0 83 0.0028 21.1 2.9 19 373-391 3-21 (34)
457 3hhl_A RPA0582; alpha-beta-bar 20.9 56 0.0019 28.3 2.8 20 106-125 87-106 (143)
458 3ghg_B Fibrinogen beta chain; 20.9 1.1E+02 0.0038 31.7 5.4 29 368-396 160-189 (461)
459 2a01_A Apolipoprotein A-I; fou 20.7 4.4E+02 0.015 24.3 9.2 62 320-381 93-164 (243)
460 3eff_K Voltage-gated potassium 20.7 1.3E+02 0.0046 25.0 5.1 24 363-386 110-133 (139)
461 1jcd_A Major outer membrane li 20.7 1.5E+02 0.0052 21.6 4.6 24 368-391 8-31 (52)
462 1gd2_E Transcription factor PA 20.6 2.4E+02 0.0083 21.6 6.1 52 340-391 18-70 (70)
463 2d9o_A DNAJ (HSP40) homolog, s 20.6 2.5E+02 0.0087 22.2 6.6 51 74-129 26-76 (100)
464 2zdi_C Prefoldin subunit alpha 20.6 1E+02 0.0035 26.4 4.5 39 368-410 27-68 (151)
465 2l5g_A GPS2 protein, G protein 20.5 2.1E+02 0.0073 19.6 4.9 23 368-390 12-34 (38)
466 3m9b_A Proteasome-associated A 20.5 1.3E+02 0.0046 28.7 5.5 68 321-392 23-96 (251)
467 3lay_A Zinc resistance-associa 20.1 3.8E+02 0.013 23.9 8.3 24 361-384 110-133 (175)
468 2ec1_A Nucleoporin 50 kDa; ran 20.1 51 0.0018 27.8 2.4 22 107-128 99-120 (125)
469 1kd8_A GABH AIV, GCN4 acid bas 20.1 73 0.0025 21.6 2.6 8 384-391 21-28 (36)
No 1
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-22 Score=177.61 Aligned_cols=108 Identities=28% Similarity=0.520 Sum_probs=90.8
Q ss_pred eeecCCCccchhhhhccc-------ccCcccccccccCCCCCCcCCCCCCCceeeecccCcccccCC-cchhhhhhhhc-
Q 014500 185 LSTICDHSFQCSCTAKWT-------VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY-KEGHAVRHWKD- 255 (423)
Q Consensus 185 ~t~~C~H~Fh~~Cl~kW~-------~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy-~~~HA~~H~e~- 255 (423)
++..|.|.++..++.+|. ...|+.|+... ......+.+|....++|+||+||++||||| .++||.+||++
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~-~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~ 81 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDN-KVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTP 81 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCT-TSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCccccccc-cccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCc
Confidence 467899999998887775 25699998854 223445678999999999999999999998 67999999999
Q ss_pred --CCCceeeeCCCceEEEccCCccccccccccccCCeeeec
Q 014500 256 --TQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMN 294 (423)
Q Consensus 256 --t~H~lal~l~t~rVwcY~cd~yVHrl~q~k~dgklvel~ 294 (423)
++||++++++|.+||||.||+||+ ..+.+.++++|++.
T Consensus 82 ~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v~~~ 121 (126)
T 2i50_A 82 RSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVVDYV 121 (126)
T ss_dssp CSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHHHHH
T ss_pred CCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHHHHH
Confidence 899999999999999999999998 56777788888763
No 2
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.85 E-value=4.8e-22 Score=174.67 Aligned_cols=84 Identities=30% Similarity=0.486 Sum_probs=68.5
Q ss_pred hhhhcccccCccccccccc----------CCCCCCcCCCCCCCceeeecccCcccccCCc------chhhhhhhhcCCCc
Q 014500 196 SCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCLICGFVGCGRYK------EGHAVRHWKDTQHW 259 (423)
Q Consensus 196 ~Cl~kW~~~~CPvCR~~~~----------~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy~------~~HA~~H~e~t~H~ 259 (423)
.|+.+|.+..||+|++... +++.+.|.+|+...++|+||+||++|||||. ++||+.||++++|+
T Consensus 2 ~~~~~W~~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 2 QEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp ---------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred hHHHhhcCCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 5899999999999999742 2345789999999999999999999999997 89999999999999
Q ss_pred eeeeCCC-----ceEEEccCCcccc
Q 014500 260 YSLDLRT-----QQIWDYVGDNYVH 279 (423)
Q Consensus 260 lal~l~t-----~rVwcY~cd~yVH 279 (423)
++++++| ++||||.||+||+
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEE
T ss_pred EEEECCCCCCCCCeEEECCCCCEeE
Confidence 9999999 6999999999995
No 3
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.80 E-value=4.7e-20 Score=157.69 Aligned_cols=63 Identities=38% Similarity=0.809 Sum_probs=61.0
Q ss_pred CCCcCCCCCCCceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccccc
Q 014500 218 RPTCSVCGTVENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 280 (423)
Q Consensus 218 ~~~C~~C~~~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVHr 280 (423)
...|.+|+...++|+||+||++||||+.++||.+||++++|++++++++.+||||.||+|||+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCC
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEec
Confidence 467999999999999999999999999999999999999999999999999999999999986
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.74 E-value=9e-19 Score=146.78 Aligned_cols=62 Identities=35% Similarity=0.816 Sum_probs=59.0
Q ss_pred CCCCcCCCC-CCCceeeecc--cCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCccc
Q 014500 217 ERPTCSVCG-TVENLWVCLI--CGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 278 (423)
Q Consensus 217 ~~~~C~~C~-~~~~lWiCL~--CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yV 278 (423)
....|.+|+ ..+++|+||+ ||++||||+.++||..||++++|+++++++|.+||||.||+||
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 467899999 6679999999 9999999999999999999999999999999999999999998
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.73 E-value=6.3e-19 Score=195.42 Aligned_cols=110 Identities=28% Similarity=0.460 Sum_probs=81.7
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCccccccccc----------CCCCCCcCCCCCCCceeeec
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQ----------QDERPTCSVCGTVENLWVCL 234 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~----------~~~~~~C~~C~~~~~lWiCL 234 (423)
.++|.. |+||++..+.||++ +.+.++..|+.+|.+..||+|++... +++.+.|.+|+...++|+||
T Consensus 156 ~~~~~~--~~~~~~~~~~~i~~--~~~~~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL 231 (854)
T 3ihp_A 156 GGLPDI--VRDRVTSAVEALLS--ADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNL 231 (854)
T ss_dssp TTSCHH--HHHHHHHHHHHHTC------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEET
T ss_pred ccCChh--hHHHHHHHHHHHHh--cCCHHHHHHHHhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEe
Confidence 445443 89999887777775 57899999999999888999999731 13457899999999999999
Q ss_pred ccCcccccCCc------chhhhhhhhcCCCceeeeCCC-----ceEEEccCCccc
Q 014500 235 ICGFVGCGRYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYV 278 (423)
Q Consensus 235 ~CG~vgCgRy~------~~HA~~H~e~t~H~lal~l~t-----~rVwcY~cd~yV 278 (423)
+||++||||+. ++||+.||++++|+++++++| .+||||.||+||
T Consensus 232 ~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v 286 (854)
T 3ihp_A 232 TDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 286 (854)
T ss_dssp TTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEC
T ss_pred cCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCee
Confidence 99999999986 789999999999999999999 999999999999
No 6
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.71 E-value=2.6e-18 Score=145.12 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=62.4
Q ss_pred ccccccccc-CCCCCCcCCCCCCC----ceeeecccCcccccCC-cchhhhhhhhcCCCceeeeCC--CceEEEccCCcc
Q 014500 206 CQVCRFCHQ-QDERPTCSVCGTVE----NLWVCLICGFVGCGRY-KEGHAVRHWKDTQHWYSLDLR--TQQIWDYVGDNY 277 (423)
Q Consensus 206 CPvCR~~~~-~~~~~~C~~C~~~~----~lWiCL~CG~vgCgRy-~~~HA~~H~e~t~H~lal~l~--t~rVwcY~cd~y 277 (423)
||.-...+. +++...|.+|+..+ +||+||+||++||||| .++||.+||++|+||+++.++ +.+||||.||+|
T Consensus 5 C~Hl~~~~~~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~ 84 (102)
T 2ida_A 5 CRHVAGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVM 84 (102)
T ss_dssp CGGGGGCCCCCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEE
T ss_pred CcCccccccCCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcE
Confidence 555444432 34567899999886 8999999999999999 899999999999999776654 689999999999
Q ss_pred ccc
Q 014500 278 VHR 280 (423)
Q Consensus 278 VHr 280 (423)
|+.
T Consensus 85 V~~ 87 (102)
T 2ida_A 85 FDL 87 (102)
T ss_dssp EEC
T ss_pred EEC
Confidence 965
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.29 E-value=1.1e-12 Score=134.88 Aligned_cols=60 Identities=23% Similarity=0.664 Sum_probs=56.3
Q ss_pred CCCcCCCCCC--CceeeecccCcccccCCcchhhhhhhhcCCCceeeeCCCceEEEccCCcccc
Q 014500 218 RPTCSVCGTV--ENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 279 (423)
Q Consensus 218 ~~~C~~C~~~--~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l~t~rVwcY~cd~yVH 279 (423)
...|..|+.. .++|+||+||++|||+ ++||..|+++++|++++++++++||||.||+||.
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~ 109 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIG 109 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEEC
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcc
Confidence 3579999987 7999999999999997 7999999999999999999999999999999994
No 8
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=7.9e-10 Score=93.97 Aligned_cols=78 Identities=28% Similarity=0.545 Sum_probs=59.7
Q ss_pred CCCCCCcccccccCCC---CCcceeecCCCccchhhhhccc--ccCccccccccc---------CCCCCCcCCCCCCC--
Q 014500 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCHQ---------QDERPTCSVCGTVE-- 228 (423)
Q Consensus 165 ~ElptCpICLE~ld~~---~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~~---------~~~~~~C~~C~~~~-- 228 (423)
.+..+||||++.+.+. ...++.++|+|.||..|+.+|. ...||+||.... .++...|..|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 4567999999999763 2234789999999999999995 568999998653 23457799997642
Q ss_pred -----ceeeecccCccccc
Q 014500 229 -----NLWVCLICGFVGCG 242 (423)
Q Consensus 229 -----~lWiCL~CG~vgCg 242 (423)
...+.+.||+++|.
T Consensus 85 ~~~~~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCS 103 (133)
T ss_dssp HHHTTCCEEEETTSBEEEH
T ss_pred ccccCcceEeCCCCChhhH
Confidence 23477889999883
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.78 E-value=3.1e-09 Score=77.73 Aligned_cols=48 Identities=23% Similarity=0.491 Sum_probs=40.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.+...|+||++.+..+...+..++|+|.||..|+.+|. ...||+||..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCc
Confidence 45678999999997654557788999999999999997 4789999974
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=3.6e-09 Score=77.52 Aligned_cols=48 Identities=25% Similarity=0.709 Sum_probs=39.4
Q ss_pred CCCCCCCcccccccCCCCCcceeec-CCCccchhhhhccc--ccCccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~-C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
+.+...|+||++.+..+. .+..++ |+|.||..|+.+|. ...||+||..
T Consensus 2 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CCCCCcCccCCccccCCC-ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 356789999999998753 355666 99999999999997 5689999974
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.5e-09 Score=83.56 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=36.5
Q ss_pred CCCCCCcccccccCCC----------CCcce-eecCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPD----------TSGIL-STICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~----------~~gi~-t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+..+|+||++.+++. ...++ .++|+|.||..|+.+|. ..+||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 4567788888887541 22233 44599999999999997 57899999853
No 12
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=5.7e-09 Score=81.55 Aligned_cols=49 Identities=24% Similarity=0.664 Sum_probs=41.0
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..+...|+||++.+.... .+..++|+|.||..|+.+|. ...||+||...
T Consensus 20 ~~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 356789999999998642 45678999999999999996 57899999854
No 13
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.70 E-value=1.1e-08 Score=80.32 Aligned_cols=52 Identities=29% Similarity=0.581 Sum_probs=42.1
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.....+...|+||++.+.... .+..++|+|.||..|+.+|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred cccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 344566889999999997643 35567999999999999996 56899999864
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.2e-08 Score=79.28 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..+.+...|+||++.+.... .+..++|+|.||..|+.+|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred ccCCCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 34556789999999997643 35567999999999999997 56899999864
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=6.9e-09 Score=78.89 Aligned_cols=54 Identities=26% Similarity=0.456 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCcccccccCCC---CCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 160 PPAGFTELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 160 ~~~~l~ElptCpICLE~ld~~---~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
+...+.+...|+||++.+... ...++.++|+|.||..|+.+|. ...||+||...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 344567788999999998753 1224678999999999999996 56899999753
No 16
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=77.78 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=40.6
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..+...|+||++.+... ..+..++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 45678999999999753 236778999999999999996 57899999854
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.9e-08 Score=80.08 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=43.7
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCcccccccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~~ 213 (423)
...+.+...||||++.+......+..++|+|.||..|+.+|.. ..||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 4456778999999999987544467889999999999999962 5799999854
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.9e-08 Score=77.89 Aligned_cols=47 Identities=28% Similarity=0.505 Sum_probs=39.7
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
...+...|+||++.+.. ++.++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 34567899999999876 5677999999999999997 46899999854
No 19
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.63 E-value=9.7e-09 Score=83.67 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=40.7
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..+...|+||++.+..+ ..+..++|+|.||..|+.+|. ...||+||...
T Consensus 37 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 35677899999999764 346678999999999999996 56899999854
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=79.24 Aligned_cols=50 Identities=38% Similarity=0.621 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc---------cCcccccccc
Q 014500 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---------LSCQVCRFCH 213 (423)
Q Consensus 160 ~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~---------~~CPvCR~~~ 213 (423)
....+.+..+||||++.+.+ +++++|+|+||..|+.+|.. ..||+||...
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SSCCCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hHhhcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34456778999999999976 45679999999999999863 3699999754
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-08 Score=77.63 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=40.7
Q ss_pred CCCCCCCCCCcccccccCCCCCccee-ecCCCccchhhhhccc--ccCcccccccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t-~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
...+.+...||||++.+.+ +++ ++|+|.||..|+.+|. ...||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 9 LSELTPYILCSICKGYLID----ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred HhhcCCCCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3456678899999999986 344 4999999999999997 56899999854
No 22
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.7e-08 Score=73.33 Aligned_cols=45 Identities=29% Similarity=0.738 Sum_probs=37.0
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc-----ccCcccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT-----VLSCQVC 209 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~-----~~~CPvC 209 (423)
...+.+...||||++.+.+ ++.++|+|.||..|+.+|. ...||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455678899999999987 3557999999999999993 4679987
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3e-08 Score=76.48 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~~ 213 (423)
..+.+...||||++.+.+ ++.++|+|.||..|+.+|.. ..||+||...
T Consensus 15 ~~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HhCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 345678899999999986 56779999999999999973 3799999854
No 24
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.60 E-value=1.3e-08 Score=85.50 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=37.2
Q ss_pred CCCCcccccccCCCC--------------CcceeecCCCccchhhhhccc-------ccCcccccccc
Q 014500 167 LPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT-------VLSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~--------------~gi~t~~C~H~Fh~~Cl~kW~-------~~~CPvCR~~~ 213 (423)
...||||++.|.... ..+..++|+|.||..|+.+|. ...||+||...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 458999999996532 112367899999999999997 35899999865
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=78.14 Aligned_cols=49 Identities=16% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeec-CCCccchhhhhcccc----cCcccccccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWTV----LSCQVCRFCH 213 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~-C~H~Fh~~Cl~kW~~----~~CPvCR~~~ 213 (423)
...+.+...||||++.+.+ +++++ |+|+||..|+.+|.. ..||+||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3445678899999999986 56788 999999999999973 5899999853
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.58 E-value=1.7e-08 Score=88.12 Aligned_cols=43 Identities=30% Similarity=0.690 Sum_probs=37.3
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
+..+||||++.+.+ +++++|+|+||..|+.+|. ...||+||..
T Consensus 52 ~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 96 (138)
T 4ayc_A 52 NELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKD 96 (138)
T ss_dssp HHSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCB
T ss_pred ccCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCc
Confidence 35689999999976 5788999999999999997 4679999974
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.57 E-value=1.4e-08 Score=77.89 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=40.0
Q ss_pred CCCCCCcccccccCCC---CCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~---~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+...||||++.+.+. ...+..++|+|.||..|+.+|. ...||+||...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 5678999999998753 1223688999999999999996 57899999864
No 28
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.9e-08 Score=76.27 Aligned_cols=47 Identities=32% Similarity=0.728 Sum_probs=40.0
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
..+.+...|+||++.+.. +.++|+|.||..|+.+|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred hcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 345678899999999875 577999999999999997 47899999854
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=2.3e-08 Score=75.99 Aligned_cols=48 Identities=19% Similarity=0.446 Sum_probs=38.3
Q ss_pred CCCCCccccc-ccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 166 ELPTCPICLE-RLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE-~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
+..+||||++ .+.......+.++|||+||..|+.+|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 4678999999 776644333568999999999999993 46799999854
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.4e-08 Score=77.53 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=39.7
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
...+...||||++.+.. +++++|+|.||..|+.+|. ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred cCCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 34567899999999976 5678999999999999997 46899999854
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4.1e-08 Score=73.98 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=36.9
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCcccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVC 209 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvC 209 (423)
..+.+...||||++.+.+ ++.++|+|.||..|+.+|.. ..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678899999999986 56679999999999999963 379987
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.52 E-value=2.4e-08 Score=74.71 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=38.9
Q ss_pred CCCCCcccccccCCC---CCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 166 ELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~---~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
+...||||++.+... ...+..++|+|.||..|+.+|. ...||+||...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 457899999998752 1234688999999999999997 56899999854
No 33
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.51 E-value=3.5e-08 Score=75.22 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=38.1
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
+...||||++.+... ...++|+|.||..|+.+|. ...||+||...
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456899999998752 4678999999999999996 57899999754
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=5.8e-08 Score=76.37 Aligned_cols=50 Identities=38% Similarity=0.580 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--------ccCcccccccc
Q 014500 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 213 (423)
Q Consensus 160 ~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--------~~~CPvCR~~~ 213 (423)
....+.+...||||++.+.. ++.++|+|.||..|+.+|. ...||+||...
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred HHHhCccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34556778899999999976 4578999999999999985 34799999854
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.50 E-value=5.2e-08 Score=76.36 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=39.8
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
.+.+...||||++.|.+ +++++|+|+||..|+.+|. ...||+||...
T Consensus 4 ~~~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CCSSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCcccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 34667899999999987 5678999999999999996 35799999754
No 36
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.5e-08 Score=74.56 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
..+.+...||||++.+.+. +.++|+|.||..|+.+|. ...||+||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CSCCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred hcCCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3456678999999999863 457999999999999996 35799999854
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.47 E-value=6.7e-08 Score=78.04 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccccccCCCCCcceeec-CCCccchhhhhccc----ccCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWT----VLSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~-C~H~Fh~~Cl~kW~----~~~CPvCR~~~ 213 (423)
..+.+..+||||++.+.+ +++++ |+|+||..|+.+|. ...||+||...
T Consensus 8 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 445678899999999986 56788 99999999999985 25899999853
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=9.7e-08 Score=75.08 Aligned_cols=49 Identities=43% Similarity=0.679 Sum_probs=40.4
Q ss_pred CCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--------ccCcccccccc
Q 014500 161 PAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--------VLSCQVCRFCH 213 (423)
Q Consensus 161 ~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--------~~~CPvCR~~~ 213 (423)
...+.+...||||++.+.. +..++|+|.||..|+.+|. ...||+||...
T Consensus 13 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred HHHccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 3456678899999999976 4567999999999999985 35799999864
No 39
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.46 E-value=7.4e-08 Score=81.48 Aligned_cols=48 Identities=19% Similarity=0.521 Sum_probs=38.6
Q ss_pred CCCCCCcccccccCCCC--------------CcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 165 TELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~--------------~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.+..+|+||++.++... ..+..++|+|.||..|+.+|. ..+||+||..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 35678999999987531 124568999999999999997 5789999985
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=1e-07 Score=76.22 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=38.7
Q ss_pred CCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcc-c--ccCcccccccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKW-T--VLSCQVCRFCH 213 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW-~--~~~CPvCR~~~ 213 (423)
..+.+..+||||++.+......+...+|||+||..|+.+| . ...||+||...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4457788999999988542212223359999999999984 3 56899999865
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.43 E-value=4.3e-08 Score=81.12 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=39.2
Q ss_pred CCCCCCCcccccccCCCCCccee-ecCCCccchhhhhccc--c-cCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT--V-LSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t-~~C~H~Fh~~Cl~kW~--~-~~CPvCR~~~ 213 (423)
+.+..+||||++.+.. +++ ++|+|.||..|+.+|. . ..||+||...
T Consensus 19 l~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 3567899999999986 566 8999999999999996 3 5899999864
No 42
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.9e-07 Score=74.01 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=38.8
Q ss_pred CCCCCCcccccccCCCCCcceeecCC-----Cccchhhhhcccc----cCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICD-----HSFQCSCTAKWTV----LSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~-----H~Fh~~Cl~kW~~----~~CPvCR~~~ 213 (423)
.+...|+||++.++++. .+.+||+ |.||..||.+|.. .+||+||+..
T Consensus 13 ~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 56789999999987643 4568997 9999999999972 4899999865
No 43
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.39 E-value=8.6e-08 Score=81.89 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=38.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
.+..+||||++.+.. +++++|+|+||..|+.+|. ...||+||...
T Consensus 50 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 50 EETFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 356799999999986 5778999999999999986 34899999865
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.39 E-value=8.1e-08 Score=80.90 Aligned_cols=46 Identities=26% Similarity=0.468 Sum_probs=38.7
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
..+..+||||++.+.. +++++|+|+||..|+.+|. ...||+||...
T Consensus 12 ~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 3456799999999986 5677999999999999997 34899999853
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=1.7e-07 Score=69.68 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=37.4
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
.+..+|+||++.+.. +.+++|+|+|+..|+.+|. ..||+||...
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~-~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEASG-MQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSSS-SSCSSCCSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccCC-CCCCcCCcEe
Confidence 467889999999986 4678999999999999874 4799999864
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=1.3e-07 Score=80.27 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccCCCCCcceee-cCCCccchhhhhcccccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
+.+..+||||++.+.. ++++ +|+|+||..|+.+|....||+||...
T Consensus 19 l~~~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 19 LEKLLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HHHTTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred chhCCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 3567899999999976 4566 99999999999999888899999854
No 47
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.36 E-value=1.3e-07 Score=78.97 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=38.6
Q ss_pred CCCCCCCcccccccCCCCCcceee-cCCCccchhhhhccc--ccCcccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
+.+...||||++.+.+ ++++ +|+|+||..|+.+|. ...||+||...
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp HGGGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 3567899999999976 4565 999999999999996 46899999753
No 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.36 E-value=9.1e-08 Score=78.50 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=37.6
Q ss_pred CCCCCCcccccccCCCCCcceee-cCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+...||||++.+.+ ++++ +|+|+||..|+.+|. ...||+||...
T Consensus 20 ~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 20 DDLLRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 356799999999986 4455 899999999999997 46899999854
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.28 E-value=2.1e-07 Score=77.44 Aligned_cols=45 Identities=36% Similarity=0.676 Sum_probs=37.1
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc-----cCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV-----LSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~-----~~CPvCR~~~ 213 (423)
.+...||||++.+.. +++++|+|.||..|+.+|.. ..||+||...
T Consensus 19 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 19 QKILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHHTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 346789999999976 45679999999999999973 2799999854
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.27 E-value=1.3e-07 Score=79.76 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=53.9
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccccCCCCCCcCCCCCCCc-eeeecccCcc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVEN-LWVCLICGFV 239 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~~~~~~~~C~~C~~~~~-lWiCL~CG~v 239 (423)
+.+...||||++.+.+ +++++|+|.||..|+.+|. ...||+||.......... ..-..... ...-+.|.+.
T Consensus 20 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~-~~~~l~~~i~~l~v~C~~~ 94 (116)
T 1rmd_A 20 FVKSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES-PVKSFLNILNSLMVKCPAQ 94 (116)
T ss_dssp HHHHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC-CCHHHHHHHHHCEEECCST
T ss_pred ccCCCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc-cHHHHHHHHHHhcCCCCCC
Confidence 3456799999999976 5668999999999999996 358999998642211100 00000000 1123456677
Q ss_pred cccCCc-chhhhhhhhc
Q 014500 240 GCGRYK-EGHAVRHWKD 255 (423)
Q Consensus 240 gCgRy~-~~HA~~H~e~ 255 (423)
||+... .+....|.+.
T Consensus 95 gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 95 DCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp TCCCEEEHHHHHHHHHT
T ss_pred CCcchhhHhHHHHHHHH
Confidence 887543 3455556543
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.25 E-value=1.8e-07 Score=83.60 Aligned_cols=46 Identities=30% Similarity=0.615 Sum_probs=37.9
Q ss_pred CCCCCCCCcccccccCCCCCcceee-cCCCccchhhhhccc---ccCccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT---VLSCQVCRFC 212 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~kW~---~~~CPvCR~~ 212 (423)
.+.+...||||++.+.+ ++++ +|+|.||..|+.+|. ...||+||..
T Consensus 50 ~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCRKK 99 (165)
T ss_dssp CCHHHHBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred hCCCCCCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence 34556799999999986 4554 999999999999996 4579999974
No 52
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.23 E-value=1.6e-07 Score=80.98 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=0.9
Q ss_pred CCCCCcccccccCCCC--------------CcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDT--------------SGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~--------------~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
+..+|+||++.++... ..++.++|+|.||..|+.+|. ..+||+||..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp CC-------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 4568999999987521 123346899999999999998 5689999975
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.22 E-value=3.7e-07 Score=81.28 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc---cCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---LSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~---~~CPvCR~~~ 213 (423)
.+...||||++.+.+ +++++|+|+||..|+.+|.. ..||+||...
T Consensus 76 ~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 356799999999986 56789999999999999973 4799999865
No 54
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.21 E-value=4.6e-07 Score=76.89 Aligned_cols=47 Identities=30% Similarity=0.462 Sum_probs=39.6
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
.+.+...||||++.+.. +++++|+|.||..|+.+|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 45667899999999986 4677999999999999996 24899999854
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.21 E-value=4.4e-07 Score=71.16 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=37.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCc-cchhhhhcccccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
.+...|+||++.+.+ ++.++|+|. |+..|+.+| ..||+||...
T Consensus 22 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC--SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC--ccCCCcCcCc
Confidence 356799999999876 678899999 999999999 7899999753
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.16 E-value=1.2e-06 Score=70.70 Aligned_cols=47 Identities=6% Similarity=-0.121 Sum_probs=40.2
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+-+...||||++.|.+ +++++|||+|+..|+.+|. ..+||+||...
T Consensus 10 ~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TCCTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCchheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 34567899999999988 6788999999999999986 57899999743
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.13 E-value=4.6e-07 Score=79.95 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc---cCccccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV---LSCQVCRFC 212 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~---~~CPvCR~~ 212 (423)
+.+..+||||++.+.+ +++++|+|+||..|+.+|.. ..||+||..
T Consensus 28 l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred CCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 4567799999999987 56789999999999999963 489999984
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.10 E-value=1.3e-06 Score=72.83 Aligned_cols=47 Identities=6% Similarity=-0.124 Sum_probs=40.1
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+-+...||||++.|.+ +++++|||+|+..|+.+|. +.+||+||...
T Consensus 25 ~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp SCSTTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred cCcHhhCCcCccCcccC----CeECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 34557799999999988 6788999999999999986 57899999754
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.10 E-value=2.2e-06 Score=71.16 Aligned_cols=47 Identities=11% Similarity=-0.137 Sum_probs=40.0
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCC-Cccchhhhhccc--ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICD-HSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~-H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+-+...||||++.|.+ +++++|+ |+|+..|+.+|. +..||+||...
T Consensus 18 ~~p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp SCCTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCcHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 34556799999999988 6788999 999999999986 56899999753
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.05 E-value=9.7e-07 Score=74.69 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=39.4
Q ss_pred CCCCCCcccccccCCC---CCcceeecCCCccchhhhhccc--ccCcccccccc
Q 014500 165 TELPTCPICLERLDPD---TSGILSTICDHSFQCSCTAKWT--VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~---~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~~ 213 (423)
.+...|+||++.+.+. ...++.++|+|.||..|+.+|. ..+||+||...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 4567899999998752 1223678999999999999997 57899999854
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.04 E-value=2e-06 Score=81.47 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=39.3
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
...+...||||++.|.+ +++++|||+|+..|+.+|. ..+||+||...
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34567799999999987 6888999999999999986 23599999743
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=2e-06 Score=70.45 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCCCCCCCcccccccCCCCCcceeec-CCCccchhhhhcccc--------cCccc--ccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTI-CDHSFQCSCTAKWTV--------LSCQV--CRF 211 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~-C~H~Fh~~Cl~kW~~--------~~CPv--CR~ 211 (423)
+..+...||||++.|.+ +++++ |+|+|+..||.+|.. ..||+ |+.
T Consensus 3 ~~~~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SCSSCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred CCCcEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 34677899999999987 67775 999999999999862 37999 874
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.91 E-value=4.4e-06 Score=85.26 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=37.3
Q ss_pred CCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 167 LPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
...|+||++.+.. ++.++|+|.||..|+..|. ...||+||...
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 3699999999876 6788999999999999995 47899999854
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=5.6e-06 Score=64.81 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=35.2
Q ss_pred CCCCCcccccccCCCCCcceeecCCCc-cchhhhhcccccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
+...|+||++.+.+ ++.++|+|. |+..|+.++ ..||+||...
T Consensus 24 ~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i 66 (75)
T 2ecg_A 24 EEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVI 66 (75)
T ss_dssp HHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC--CCCccCCcee
Confidence 45689999999876 567899999 999999765 5799999854
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.85 E-value=5.6e-06 Score=74.16 Aligned_cols=47 Identities=30% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
.+.+...||||++.+.+ +++++|+|+|+..|+.+|. ...||+||...
T Consensus 14 ~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 45677899999999987 5678999999999999996 34899999754
No 66
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=64.17 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=37.1
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccc----cCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTV----LSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~----~~CPvCR~~ 212 (423)
.....|+||.+.+.++ ..-..|+|.||..|+.+|.. ..||+||..
T Consensus 13 ~~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 3478999999999763 44448999999999999972 579999975
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.75 E-value=1.2e-05 Score=63.96 Aligned_cols=42 Identities=33% Similarity=0.516 Sum_probs=36.1
Q ss_pred CCCCCcccccccCCCCCcceeecCCCc-cchhhhhcccccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
+...|+||++.... ++.++|+|. |+..|+.+|. .||+||...
T Consensus 17 ~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQLQ--SCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTCS--BCTTTCCBC
T ss_pred CCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhcC--cCCCCCchh
Confidence 45689999998876 678899999 9999999985 899999853
No 68
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.71 E-value=8.6e-06 Score=62.21 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=35.6
Q ss_pred CCCCCCcccccccCCCCCcceee--cCCCc-cchhhhhccc--ccCccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILST--ICDHS-FQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~--~C~H~-Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.+...|+||++...+ .+.+ +|+|. |+..|..+|. +..||+||..
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~ 54 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQP 54 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcc
Confidence 356789999999876 3444 99999 7899999986 4679999974
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.69 E-value=1.7e-05 Score=79.81 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=37.6
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCc-cchhhhhcccccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
.+...|+||++.+.. ++.++|+|. ||..|+.+| ..||+||...
T Consensus 293 ~~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL--RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC--SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC--CcCCCCCCCc
Confidence 456899999999876 678899999 999999999 6799999753
No 70
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.65 E-value=1.8e-05 Score=72.91 Aligned_cols=47 Identities=11% Similarity=-0.081 Sum_probs=39.2
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~ 213 (423)
.+-+...||||++.|.+ +++++|||+|+..|+.+|. +.+||+||...
T Consensus 102 ~ip~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCcHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 34567799999999987 6788999999999999986 23699999743
No 71
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.55 E-value=2e-05 Score=59.99 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=35.1
Q ss_pred CCCCCcccccccCCCCCcceeecCCCc-cchhhhhccc--ccCccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
....|+||++...+.+ ++.++|+|. |+..|..+|. +..||+||..
T Consensus 6 ~~~~C~IC~~~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~ 53 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN--IIHGRTGHLVTCFHCARRLKKAGASCPICKKE 53 (63)
T ss_dssp GGSBCTTTSSSBSCEE--EEETTEEEEEECHHHHHHHHHTTCBCTTTCCB
T ss_pred cCCCCcccCCcCCCeE--EEecCCCCHhHHHHHHHHHHHhCCcCCCcCch
Confidence 4568999999876521 233499998 9999999976 4589999974
No 72
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=8.1e-05 Score=57.59 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCc-cchhhhhcccccCcccccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHS-FQCSCTAKWTVLSCQVCRFCH 213 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~-Fh~~Cl~kW~~~~CPvCR~~~ 213 (423)
...+...|+||++...+ ++.+||+|. |+..|+.+ ...||+||...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~--~~~CP~CR~~i 56 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY--FQQCPMCRQFV 56 (68)
T ss_dssp SCCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH--CSSCTTTCCCC
T ss_pred cCCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc--CCCCCCCCcch
Confidence 33567899999998765 678899999 99999974 35799999853
No 73
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.51 E-value=5.4e-05 Score=73.54 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=38.5
Q ss_pred CCCCCCCCCcccccccCCCCCccee-ecCCCccchhhhhccc-c---cCccc--cccc
Q 014500 162 AGFTELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKWT-V---LSCQV--CRFC 212 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~gi~t-~~C~H~Fh~~Cl~kW~-~---~~CPv--CR~~ 212 (423)
.+..+..+||||++.|.+ +++ +.|||+|+..|+.+|. . ..||+ ||..
T Consensus 176 ~~~~~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp CSSBCCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred cCCceeeECcCccCcccC----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 456778899999999987 565 5999999999999964 2 46999 9874
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.31 E-value=5.4e-05 Score=61.46 Aligned_cols=46 Identities=20% Similarity=0.544 Sum_probs=33.5
Q ss_pred CCCCCCcccccccCCCCCccee-ecCCCccchhhhhcc-cc---------cCccc--cccc
Q 014500 165 TELPTCPICLERLDPDTSGILS-TICDHSFQCSCTAKW-TV---------LSCQV--CRFC 212 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t-~~C~H~Fh~~Cl~kW-~~---------~~CPv--CR~~ 212 (423)
.+..+||||++.+.... ... .+|+|.|+..|+..+ .. ..||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ--MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG--EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc--ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999987532 223 379999999999884 31 36888 8764
No 75
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.24 E-value=9.4e-05 Score=74.48 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=35.5
Q ss_pred CCCCCcccccccCCCCCcc----eeecCCCccchhhhhcccc-------------cCccccccc
Q 014500 166 ELPTCPICLERLDPDTSGI----LSTICDHSFQCSCTAKWTV-------------LSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi----~t~~C~H~Fh~~Cl~kW~~-------------~~CPvCR~~ 212 (423)
....|+||++.+.++..-+ ....|+|.||..|+.+|.. ..||.||..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 4668999999987632111 1358999999999999972 369999974
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.19 E-value=0.00011 Score=55.81 Aligned_cols=45 Identities=29% Similarity=0.663 Sum_probs=34.3
Q ss_pred CCCCCCcccccccCCCCCcceeecCC--C---ccchhhhhccc----ccCcccccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICD--H---SFQCSCTAKWT----VLSCQVCRFCH 213 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~--H---~Fh~~Cl~kW~----~~~CPvCR~~~ 213 (423)
.+...|.||++..++ .+..||. + .||..|+.+|. +.+||+|++..
T Consensus 4 ~~~~~CrIC~~~~~~----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGN----ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSC----CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCC----ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 356789999997443 2357865 4 79999999996 46899999854
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.0055 Score=48.17 Aligned_cols=70 Identities=7% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
......|.|-.+|..+|-.||..+++.+ .|..++|+++..-.++-...+.|.+.++|+.-.. +||..|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 3456889999999999999999999988 7999999996332346689999999999999999 99998864
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.64 E-value=0.00061 Score=51.71 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=35.2
Q ss_pred CCCcccccccCCCCCcceee-cCCCccchhhhhccc--ccCccccccc
Q 014500 168 PTCPICLERLDPDTSGILST-ICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
..||||++.|.+ ++.. ++||+|...|+.+|. +..||+++..
T Consensus 4 ~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~ 47 (61)
T 2bay_A 4 MLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEP 47 (61)
T ss_dssp CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCB
T ss_pred EEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCC
Confidence 469999999997 4666 899999999999997 4579999864
No 79
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.48 E-value=0.015 Score=44.94 Aligned_cols=72 Identities=6% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+..|.|=.+|..+|-.|+..+++.+- .|.+++++++. .-.++-...++|.+.++|..-...+||..|..
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567899999999999999999998663 48999999853 12346689999999999999999999988864
No 80
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.43 E-value=0.0011 Score=55.45 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=46.7
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhccc---ccCcccccccccCCCCCCcCCCCCCCceeeecccCcccccCC
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAKWT---VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLICGFVGCGRY 244 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~---~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~CG~vgCgRy 244 (423)
-|++|.-++.. -...+||.|.|+.+|...|. +..||.|+...+.. . .+ ..+++|+|-+ ..||-|.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV---e--~~-~~~~if~C~~--~~~Ckrt 70 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI---E--QC-TRGSLFMCSI--VQGCKRT 70 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE---E--EE-EGGGCCCCCC--CCCCCCC
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee---E--Ee-ccCCEEECCC--CCCHHHH
Confidence 47888777654 13478999999999999985 57899999754211 1 12 2378888764 7899885
No 81
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.36 E-value=0.022 Score=44.53 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
..+..|.|=.+|..+|-.||..+++.+ ..|..++++++.+ .++-...+.|.+.+.|+.-...+||..|+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~g-~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADIKMENG-KSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEEEESSS-CEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEccCC-CcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356789999999999999999999865 3688899998544 3566899999999999999999999998753
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.32 E-value=0.031 Score=44.91 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 59 ~~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.|......|.|-.+|..+|-.||..++..+ . |..++|+++.. -.++-...+.|.+.+.|+.-. .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 3445567889999999999999999999999 4 99999998542 123557999999999999999 899988864
No 83
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.031 Score=44.76 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
......|.|-.+|..+|-.||..+++.+ -.|..++|+++... ++-...+.|.+.++|+.-...+||..|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456889999999999999999999765 36889999986543 57789999999999999999999999864
No 84
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.29 E-value=0.076 Score=42.49 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=59.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..++|+++..-..+-...+.|.+.+.|+.-...+||..+..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 468899999999999999999998764 4899999986422346689999999999999999999998864
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.17 E-value=0.03 Score=44.03 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+......|.|-.+|..+|-.||..++..+- .|..++|+++..-.++-...++|.+.++|+.-...+||..|..
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 334578899999999999999999998763 6888999985432346689999999999999999999998864
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.041 Score=43.21 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=59.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..++..+- .|..++++++.. -.++-...++|.+.++|..-...+||..|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999998664 589999998532 1245689999999999999999999998874
No 87
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.12 E-value=0.047 Score=43.70 Aligned_cols=70 Identities=6% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++.+ .++-...+.|.+.++|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEECSS-SEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcCCC-CcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3567899999999999999999998664 488999998633 457789999999999999999999999864
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.09 E-value=0.037 Score=43.36 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=59.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+- .|..++++++... .++-...++|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568899999999999999999997653 5889999985421 345689999999999999999999998864
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.06 E-value=0.043 Score=45.00 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
+...+..|.|=.+|..+|-.|+..+++.+- .|..++++++.. -..+-...+.|.+.+.|..-...+||..|...
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344678899999999999999999997664 589999998532 12356899999999999999999999988753
No 90
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.037 Score=44.09 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=59.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|..++++++..-.++-...+.|.+.++|+.-...+||..|+.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457799999999999999999998763 5899999986522345689999999999999999999998874
No 91
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.02 E-value=0.056 Score=44.14 Aligned_cols=73 Identities=7% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+......|.|=.+|..+|-.||..++..+ ..|..++|+++. .-..+-...+.|.+.+.|+.-...+||..|..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 33467889999999999999999999865 358999999853 12346689999999999999999999998864
No 92
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.00 E-value=0.038 Score=45.86 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++..-.++-...+.|.+.++|+.-...+||..|+.-
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999998774 48899999865333566899999999999999999999998753
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.99 E-value=0.031 Score=45.36 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+...+..|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-...+.|.+.+.|..-...+||..|..
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34457889999999999999999999766 3688899987531 1235689999999999999999999998864
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.97 E-value=0.034 Score=44.72 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=60.9
Q ss_pred CCCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC--CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 59 QNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 59 ~~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~--p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.|......|.|-.+|..+|-.||..+++.+- |..++|+++... .++-...+.|.+.+.|+.-. .+||..|..
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34555678899999999999999999999884 999999986421 34557899999999999999 999998864
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.062 Score=43.12 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+..|.|-.+|..+|-.||..+++.+ ..|..++++++.. -.++-...+.|.+.+.|..-...+||..|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 3456889999999999999999998766 4788999998532 1236689999999999999999999998874
No 96
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.036 Score=43.44 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=58.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+- .|..++++++.. -.++-...++|.+.+.|+.-...+||..|..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3567899999999999999999997664 488999988532 1235578999999999999999999998874
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.84 E-value=0.088 Score=41.84 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeE--------EEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCC
Q 014500 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (423)
Q Consensus 60 ~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~--------iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~ 130 (423)
.|......|.|=.+|..+|-.||..+++.+- .|.. ++++++.. -..+-...+.|.+.++|..-...+||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445678899999999999999999998764 5666 88988522 234668999999999999999999999
Q ss_pred cCCC
Q 014500 131 RFSP 134 (423)
Q Consensus 131 ~Fns 134 (423)
.|..
T Consensus 87 ~~~g 90 (99)
T 2la6_A 87 EFSG 90 (99)
T ss_dssp BSSS
T ss_pred EeCC
Confidence 8874
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.83 E-value=0.044 Score=43.87 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+- .|..++|+++.. -.++-...++|.+.++|+.-...+||..|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568899999999999999999998763 588999988532 1245689999999999999999999999874
No 99
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.069 Score=43.40 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=59.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|=.+|..+|-.||..+++.+- .|.+++|+++..-..+-...+.|.+.+.|+.-...+||..|+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 467899999999999999999998663 6888999985433346689999999999999999999999864
No 100
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.81 E-value=0.057 Score=43.20 Aligned_cols=70 Identities=7% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..+++.+- .|..++|+++.. .++-...+.|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCC-SSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCC-CCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 4568899999999999999999887653 688999999654 357789999999999999999999998863
No 101
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.77 E-value=0.065 Score=42.94 Aligned_cols=72 Identities=10% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec---CCCCCceEEEEEeCChhhHHHHHhhh-CCCcCCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN---DAMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSPA 135 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~---~~~p~~ymvLikF~~q~~AdeF~~~~-ng~~Fnsl 135 (423)
......|.|-.+|..+|-.||..+++.+- .|..++|+++ .+ .++-...++|.+.+.|+.-...+ ||..|...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTG-AHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSC-SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCC-CcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 34568899999999999999999987664 6889999886 23 34668999999999999999999 99998743
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.029 Score=43.23 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=57.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.+..|.|-.+|..++..||..+++.+ ..|..++++++.. -.++-...+.|.+.++|+.-...+||..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46789999999999999999988765 3688999998532 123557999999999999999999999876
No 103
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.71 E-value=0.041 Score=42.18 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=58.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.|+..+++.+- .|..++++++... ..+-...+.|.+.++|..-...+||..|..
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467899999999999999999997653 6888999885321 235579999999999999999999998864
No 104
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.096 Score=42.61 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=59.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..++..+- .|..++|+++..-.++-...+.|.+.+.|+.-...+||+.+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 467899999999999999999987664 5889999986422346689999999999999999999999964
No 105
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.69 E-value=0.065 Score=42.82 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=59.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCc-CCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR-FSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~-Fns 134 (423)
.+..|.|=.+|..+|-.||..+++.....|..++|+++..-.++-...+.|.+.++|+.-...+||.. |+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 45779999999999999999999873446899999986422356689999999999999999999998 865
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.66 E-value=0.066 Score=43.02 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
......|.|-.+|..+|-.||..++..+ ..|..++|+++..-..+-...+.|.+.++|..-...+||..|..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3456889999999999999999998755 36789999986532346689999999999999999999998864
No 107
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.64 E-value=0.068 Score=40.72 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=56.9
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..|.|-.+|..+|-.||..+++.+- .|..++++++.. ..++-...+.|.+.++|+.-...+||..++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4688999999999999999997663 688999998532 2336689999999999999999999999864
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.56 E-value=0.067 Score=41.06 Aligned_cols=66 Identities=8% Similarity=0.121 Sum_probs=56.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhh-CCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNL-NGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~-ng~~Fns 134 (423)
.....|.|-.+|..+|-.|+..+++.+- .|..++++++ +-...+.|.+.+.|..-...+ ||..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFG-EIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTS-CEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCC-CEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 3567899999999999999999988764 4889999983 337999999999999999987 8888764
No 109
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.55 E-value=0.084 Score=42.16 Aligned_cols=71 Identities=7% Similarity=0.125 Sum_probs=59.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 4568899999999999999999987663 588899998531 1346689999999999999999999998864
No 110
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.53 E-value=0.061 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=58.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|=.+|..+|-.||..+++.+- .|..++++++. .-.++-...+.|.+.++|+.-...+||..|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467899999999999999999997663 68889998854 11345689999999999999999999999874
No 111
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.53 E-value=0.069 Score=43.54 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=58.9
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+..|.|-.+|..+|-.||..+++.+ ..|..++++++.. ++-...+.|.+.++|..-...+||..|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTPE--TRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEECSTT--TTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCC--CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999998765 3688899998542 36678999999999999999999999864
No 112
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.53 E-value=0.078 Score=42.21 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+- .|..++|+++... .++-...++|.+.+.|..-...+||..|..
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999987663 5889999985321 235589999999999999999999999874
No 113
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.46 E-value=0.077 Score=43.34 Aligned_cols=70 Identities=9% Similarity=0.167 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..++..+- .|..++|+++.. -.++-...++|.+.+.|+.-...+||..|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999998663 488999998541 2345679999999999999999999998863
No 114
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.049 Score=44.55 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++++++.+ .++-...+.|.+.++|+.-...+||..|+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTC-CCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcC-CEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3467899999999999999999998663 588899998654 357789999999999999999999998874
No 115
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.32 E-value=0.06 Score=42.58 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+..|.|=.+|..+|-.||..+++.+- .|..++++++.. -.++-...+.|.+.++|..-...+||..|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 46789999999999999999998664 588999998532 1346689999999999999999999998874
No 116
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.32 E-value=0.12 Score=41.27 Aligned_cols=71 Identities=7% Similarity=0.026 Sum_probs=59.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++++++.. -.++-...+.|.+.++|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4568899999999999999999998764 688899988531 1245579999999999999999999998874
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.24 E-value=0.17 Score=40.08 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=58.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.....|.|=.+|..+|-.||..+++.+ ..|..++|+++.. -.++-...++|.+.++|+.-.. .||..|+..
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 356789999999999999999999876 3688999998532 1246689999999999999998 899988743
No 118
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.24 E-value=0.28 Score=40.56 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=59.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+- .|..++|+++..-..+-...++|.+.++|..-...+||..|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4567899999999999999999987653 6889999985422346689999999999999999999998874
No 119
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.093 Score=41.49 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=59.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee-EEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~-~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
..+..|.|=.+|..+|-.||..++..+- .|. .++|+++.. -.++-...+.|.+.++|+.-...+||..+..-
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTT-CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhC-CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 3467899999999999999999997664 455 899998531 12355799999999999999999999988754
No 120
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.21 E-value=0.075 Score=45.42 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=59.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC---CCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~---p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
++..|.|-.+|..+|-.||..++..+- .|..++++++... .++-...++|.+.++|+.....+||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 457899999999999999999998764 5999999996543 35668999999999999999999998874
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.20 E-value=0.14 Score=40.66 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+- .|..+++.++ +-...+.|.+.+.|+.....+||..|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3567899999999999999999998764 5788888873 3378999999999999999999999874
No 122
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.20 E-value=0.091 Score=43.55 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=60.3
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
+...+..|.|-.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+.+.|..-...+||..|+..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 334568899999999999999999987654 688999988531 12355789999999999999999999998743
No 123
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.085 Score=41.34 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++++++ ...+.|.+.++|+.-...+||..|..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYG-PVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4568899999999999999999998764 5888888873 68999999999999999999999864
No 124
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.16 E-value=0.19 Score=40.21 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=59.3
Q ss_pred CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 60 NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 60 ~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
.+......|.|=.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+.+.|..-...+||..+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3445678899999999999999999987663 588999988532 12456899999999999999999999886
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.11 E-value=0.072 Score=40.84 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=55.6
Q ss_pred cEEEEEecCCCC------CHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 66 TCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 66 ~~lcilaVP~~m------s~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.|.|=.+|..+ |-.||..+++.+- .|..+++.+..+ .++-...+.|.+.++|+.-...+||..|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC-CEEEEECCCBTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC-CeEEEEecCCCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 578899999998 6788988887664 488888887554 346689999999999999999999999864
No 126
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.11 E-value=0.066 Score=42.07 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=57.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEE-EEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL-IFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~i-riir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..+ +|+++. .-.++-...+.|.+.++|+.-...+||..|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357899999999999999999998763 46677 888852 12346689999999999999999999999864
No 127
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.08 E-value=0.11 Score=44.07 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..++|+++... ..+-...+.|.+.+.|+.-...+||..|+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457799999999999999999997663 5889999985321 345678999999999999999999998874
No 128
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.07 E-value=0.088 Score=41.89 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|=.+|..+|-.||..+++.+ -.|+++++..-..+-...+.|.+.+.|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 457889999999999999999999854 45577775322346689999999999999999999998873
No 129
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.07 E-value=0.064 Score=41.27 Aligned_cols=70 Identities=6% Similarity=0.129 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCC--CceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAME--DRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p--~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..++++++.... ++-...+.|.+.++|+.-...+||..|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 357799999999999999999987653 77889998854211 45589999999999999999999999874
No 130
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.05 E-value=0.11 Score=41.90 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=58.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.++.|.|=.+|..+|-.||..+++.+ -.|..++++++... .++-...+.|.+.++|+.-...+||..|..
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45779999999999999999998765 36899999985321 235578999999999999999999998864
No 131
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.03 E-value=0.095 Score=44.30 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
++.|.|-.+|..+|-.||..+++.+- .|..++++++.. -.++-...+.|.+.++|+.....+||..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 46799999999999999999998664 589999998541 1235679999999999999999999998864
No 132
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.02 E-value=0.07 Score=41.65 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=55.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|.+++++++ ...+.|.+.+.|+.-...+||..|+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS-CEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC-CEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 457799999999999999999987664 4889999873 68899999999999999999998864
No 133
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.096 Score=44.21 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.|.|-.+|..+|-.||..++..+- .|.+++++++....++-...+.|.+.++|......+||..+..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEECCCCCcCCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 588999999999999999998664 6999999986544456689999999999999999999998863
No 134
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.00 E-value=0.11 Score=43.51 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..+++.+ ..|..++++++.. -.++-...+.|.+.+.|+.-...+||..|..
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGG-SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356889999999999999999999766 3688899988521 1346689999999999999999999988863
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=94.96 E-value=0.045 Score=43.90 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC--CCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~--~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
......|.|=.+|..+|-.||..+++.+- |..++|+++. .-.++-...+.|.+.++|+.-. .+||..|+.-
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 34568899999999999999999999885 9999999853 1234567999999999999999 8999998753
No 136
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.91 E-value=0.049 Score=43.48 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=59.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
..+.|.|=.+|..+|-.||..+++.+- .|..++++++.. -.++-...+.|.+.++|..-...+||..|..-
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 357799999999999999999998664 588899998531 13466899999999999999999999998643
No 137
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.071 Score=42.45 Aligned_cols=70 Identities=7% Similarity=0.045 Sum_probs=58.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..++..+ -.|..++|+++.. -.++-...+.|.+.++|+.-...+||..|..
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999865 3678888888522 1246689999999999999999999998863
No 138
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.88 E-value=0.26 Score=41.95 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=59.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.|+.++++.+- .|..++++++..-.++-...++|.+.++|..-...+||+.+..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFG-QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCC-CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 467899999999999999999998764 4889999986432346689999999999999999999988753
No 139
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.86 E-value=0.14 Score=41.84 Aligned_cols=71 Identities=8% Similarity=0.099 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..++..+- .|..++|+++.. -.++-...+.|.+.+.|+.-...+||..|..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568899999999999999999987653 588999998532 1346689999999999999999999998863
No 140
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.80 E-value=0.11 Score=42.17 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee-------EEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-------ELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~-------~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..+++.+-.-.+ .++|+++.. -.++-...+.|.+.+.|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 35678999999999999999999987744332 688888521 2345689999999999999999999999874
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=94.76 E-value=0.065 Score=42.76 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
..+..|.|=.+|..+|-.||..+++.+ ..|..++++++..-.++-...+.|.+.++|+.-.. ||..++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~ 74 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH 74 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC
Confidence 346789999999999999999998766 36889999986422356789999999999999888 555554
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.61 E-value=0.18 Score=44.16 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=59.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+..|.|-.+|..+|-.+|..+++.+ -.|..++|+++... ..+-...+.|.+...|..-...+||..|..
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999999876 36899999985321 235689999999999999999999998864
No 143
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.61 E-value=0.24 Score=39.95 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+ -.|..++|.++. .++-...++|.+.++|+.-...+||..|+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~v~~~~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY-GAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEECCSS--SSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEEECC--CCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346789999999999999999999875 368888887743 246688999999999999999999998863
No 144
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.21 Score=40.72 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=57.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.....|.|-.+|..+|-.||..++..+- .|..++|+++.. -.++-...++|.+.+.|+.....+|+ .|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 4568899999999999999999998663 489999998532 13456899999999999999999998 565
No 145
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.49 E-value=0.11 Score=41.03 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=58.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC----CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~----p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|=.+|..+|-.||..+++.+- .|..++|+++... .++-...+.|.+.++|+.-...+||..|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 356799999999999999999987653 5888999885321 346689999999999999999999998874
No 146
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=94.48 E-value=0.11 Score=39.80 Aligned_cols=66 Identities=9% Similarity=0.224 Sum_probs=56.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc---c-------ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI---D-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~---~-------~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
.....|.|=.+|..+|-.|+..+++.+. . .|.++++.++ +-...+.|.+.++|..-. .+||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 4567899999999999999999988762 3 7888888873 347999999999999999 9999988
Q ss_pred CC
Q 014500 133 SP 134 (423)
Q Consensus 133 ns 134 (423)
+.
T Consensus 78 ~g 79 (87)
T 2hzc_A 78 QG 79 (87)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.15 Score=40.51 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..++.|.|=.+|..+|-.||..+++.+ ..|..+++++. +-...++|.+.++|+.....+||..|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHYPE-----KGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 346789999999999999999998766 35788888852 3478999999999999999999998864
No 148
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.36 E-value=0.21 Score=39.68 Aligned_cols=68 Identities=6% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..++..+ ..++++++.. -.++-...+.|.+.++|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 346779999999999999999999844 5788887432 1235689999999999999999999998864
No 149
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.32 E-value=0.18 Score=40.52 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC--CCceEEEEEeCChhhHHHHHhhhC--CCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLN--GKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~--p~~ymvLikF~~q~~AdeF~~~~n--g~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+-..|.++++++.+.. .++-...+.|.+.+.|..-...+| +..|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 45789999999999999999999888666999999832322 356789999999999999999995 466664
No 150
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.31 E-value=0.24 Score=38.04 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.|+..+++.+ ..|.+++++++.. -..+-...++|.+.++|+.-. .+||..|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 4679999999999999999999865 3688999998531 123557999999999999999 999998864
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.28 E-value=0.35 Score=40.96 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.|+..+++.+- .|..++++++. .-.++-.+.++|.+.++|..-...+||+.|..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 467899999999999999999997654 68889999854 11235679999999999999999999999964
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.28 E-value=0.15 Score=41.89 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccce-eEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I-~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..|+..+ ..| ..++|+++..-.++-...+.|.+.+.|+.-... ||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 345789999999999999999999887 556 778999855223466899999999999999887 9988764
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.34 Score=40.76 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=59.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|..|+..+++.+ ..|..++++++.. -.++-...++|.+.++|..-...+||..|+.
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 346789999999999999999998654 4688899998532 2346679999999999999999999999864
No 154
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.25 E-value=0.26 Score=42.42 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=59.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..++..+- .|..++|+++... .++-...+.|.+.++|+.-...+||..|..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568899999999999999999998764 4889999985421 245689999999999999999999998864
No 155
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.23 E-value=0.15 Score=41.23 Aligned_cols=65 Identities=8% Similarity=0.154 Sum_probs=56.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|..++++++ +-...+.|.+.+.|..-...+||..|..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999987654 6889999884 3478999999999999999999998864
No 156
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.19 Score=40.20 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=57.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..++..+ -.|..++|+++.. -.++-...+.|.+.++|+..... ||..|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQY-GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 456789999999999999999998765 3688999998532 13456899999999999999998 9988874
No 157
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.18 E-value=0.13 Score=41.12 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=54.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|..+++++. ...++|.+.++|......+||..|+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFG-KLERVKKLKD-------YAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHS-CEEEEEECSS-------CEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEECC-------EEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 357799999999999999999887653 5778888863 68899999999999999999998863
No 158
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.11 E-value=0.29 Score=41.08 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++... .++-...++|.+.++|+.-...+||..|..
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3467899999999999999999987663 5889999985421 236689999999999999999999998874
No 159
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.08 E-value=0.2 Score=41.19 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=58.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
++.|.|=.+|..+|-.||..+++.+ ..|..++|+++.+ .++-...+.|.+.++|+.-...+||..+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4569999999999999999998766 4689999999654 346678999999999999999999998864
No 160
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.06 E-value=0.23 Score=40.96 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=57.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|..++++++. .-.++-...+.|.+.++|+.-. .+||..|..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 357899999999999999999998663 78899999852 1134668999999999999999 899998864
No 161
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.04 E-value=0.31 Score=39.14 Aligned_cols=72 Identities=6% Similarity=0.095 Sum_probs=59.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhC------CCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLN------GKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~n------g~~Fnsl 135 (423)
..+..|.|=.+|..+|-.||..+++.+- .|..++|+++.. -..+-...++|.+.++|+.-...+| |..|+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999987663 588999998532 1246689999999999999999999 8888643
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=93.94 E-value=0.2 Score=40.59 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=59.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccc--cceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHI--DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~--~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
......|.|=.+|...|-.||..|++.+- ..|..++|+++..-.++-...+.|.+.++|+.-.. .||..++.-
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 34567899999999999999999998773 34889999985432346689999999999999988 898887643
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.86 E-value=0.35 Score=40.68 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|..|+..+++.+ ..|..++++++... .++-.+.++|.+.++|..-...+||+.|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQY-GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhc-CCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 45779999999999999999999865 36888999985421 235679999999999999999999999875
No 164
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.82 E-value=0.44 Score=37.28 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEE-EeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELI-FIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~ir-iir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||..+++.+ ..|..+| ++++.. ..+ ..+.|.+.+.|..-...+||..|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~i~~~~~-~~~--afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQY-GVVESCEQVNTDSE-TAV--VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHH-SCEEEEEEECCSSS-SEE--EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhc-CCeEEEEEeecCCC-CCE--EEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999988755 3588885 666432 223 9999999999999999999999864
No 165
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.82 E-value=0.23 Score=39.15 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=54.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
+..|.|-.+|..+|-.||..+++.+- .|..+++.++ +-...+.|.+.++|..-...+||..+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFG-SIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTS-CEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 46799999999999999999998664 4788888774 337899999999999999999999886
No 166
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.82 E-value=0.27 Score=40.79 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccc--ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHID--HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~--~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..|+..+-. .|..++|+++..-.++-...+.|.+.+.|+.-.. .||..+..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 45678999999999999999999988733 4899999985432346689999999999999988 89988764
No 167
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.82 E-value=0.028 Score=53.54 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=35.7
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc----ccCccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT----VLSCQVCRFC 212 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~----~~~CPvCR~~ 212 (423)
..+.|.+|-+..-.+ ..-..|+|.||..|+.+|. ...||.|+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 489999999998763 4434499999999999995 3589999874
No 168
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.77 E-value=0.35 Score=37.54 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=55.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
....|.|=.+|..+|-.||..+++.+- .|..+++.| -...++|.+.++|+.-...+||..|+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYG-KVLECDIIK-------NYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEET-------TEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 467899999999999999999998664 588888884 1689999999999999999999988743
No 169
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.77 E-value=0.19 Score=37.58 Aligned_cols=65 Identities=8% Similarity=0.174 Sum_probs=52.8
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|.|=.+|..+|-.|+..+++.+ ..|..++++++.. ..++-...+.|.+.++|+.-.. .||..|+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQF-GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTT-SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred EEEecCCCCCCHHHHHHHHHhc-CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 6678899999999999999876 3588888888531 2346689999999999999877 88888864
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.74 E-value=0.26 Score=42.07 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.|+..+++.+ ..|..++++++. .-.++-...++|.+.++|..-...+||..|+.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999865 468999999863 12346689999999999999999999998864
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.72 E-value=0.13 Score=39.99 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+..|.|=.+|..+|-.||..+++.+ .|..+++.+ ++-...+.|.+.++|+.-...+||..|..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY--DLKYCYVDR-----NKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS--CCCCEEEEG-----GGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC--CeEEEEEeC-----CCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4679999999999999999999988 799998853 45579999999999999999999998864
No 172
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.72 E-value=0.23 Score=39.30 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCCCccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l----~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|......|.|=.+|..++-.||. .+++.+ ..|..++|+++... +-...+.|.+.++|+.-...+||..|..
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARH-GKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhcccc-CcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34456789999999999999998 555433 36899999985432 5579999999999999999999998863
No 173
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.69 E-value=0.38 Score=38.00 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~-~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.||..+++.+- -.|..+++.|. ...+.|.+.++|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g-------~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------YAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS-------EEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC-------eEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3467899999999999999999998773 57777777652 78999999999999999999998863
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.67 E-value=0.24 Score=43.93 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=58.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.+..|.|-.+|..+|-.||..++..+- .|.+++++++.. -.++-...+.|.+.++|......+||..|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 357899999999999999999998663 689999998531 12466899999999999999999999988743
No 175
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.65 E-value=0.34 Score=39.45 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCccEEEEEecCCCCCHHHHH---HHhcccccceeEEEEeecCCC----CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFV---RFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l---~F~~~~~~~I~~iriir~~~~----p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..++-.||. .+++.+ -.|.+++|+++... .++-...+.|.+.++|+.-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~-G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKF-GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTT-SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhcc-CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 346789999999999999999 777654 36888999885432 235789999999999999999999998863
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.64 E-value=0.16 Score=43.10 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=57.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
++.|.|-.+|..+|-.||..++..+- .|.+++++++.. -.++-...+.|.+.++|+.....+||..+..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 46799999999999999999997653 588999998532 1235579999999999999999999998864
No 177
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.63 E-value=0.33 Score=41.60 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++|+++. .-..+-...++|.+.+.|..-...+||..|+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4468899999999999999999986553 68899999852 11346678999999999999999999998864
No 178
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=93.58 E-value=0.09 Score=41.33 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l----~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..++-.||. .+++.+ ..|..+++.++. .++-...+.|.+.++|..-...+||..|+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~-G~i~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF-GQILDILVSRSL--KMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG-SCEEEEECCHHH--HHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEEcCC--CcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999 776654 367788887632 245578999999999999999999998863
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.56 E-value=0.23 Score=40.44 Aligned_cols=69 Identities=10% Similarity=0.236 Sum_probs=57.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..++..+ -.|..++|+++... ..+-...+.|.+.+.|+.-. .+||..|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV-GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 35789999999999999999998765 37889999975421 24567999999999999999 999998864
No 180
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.52 E-value=0.37 Score=39.25 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=57.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
....|.|-++|..+|-.||..+++.+- .|.+++|+++..-.++-...+.|.+.++|..... .||..|+.-
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 357799999999999999999998764 6899999985432346689999999999999988 788888643
No 181
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.46 E-value=0.22 Score=41.31 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=56.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|...|-.||..|+..+ .|..++|+++..-..+-...++|.+.++|+.-. ..||+.+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 35789999999999999999999988 789999998542223568999999999998887 678887764
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.43 E-value=0.42 Score=42.30 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=58.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.||..+++.+- .|..++++++... .++-.+.++|.+.++|..-...+||+.|..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 46899999999999999999997663 7899999985311 235678999999999999999999999874
No 183
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.42 E-value=0.17 Score=40.24 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.|.|=.+|..+|-.||..+++.+- .|..++++++ ++-...+.|.+.++|+.-...+||..|...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYG-PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 578889999999999999987664 6889999985 355899999999999999999999988643
No 184
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.39 E-value=0.37 Score=38.79 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=56.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.....|.|=.+|...|-.||..|+..+-.-...++|+++..-.++-...+.|.+.+.|+.-... ||..+..-
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 4567899999999999999999998774333338888753223456899999999999999998 98888654
No 185
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.39 E-value=0.29 Score=39.63 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
......|.|=.+|..+|-.||..++..+- .|..++|+++ -...+.|.+.+.|+.-...+||..|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 34467899999999999999999998664 5899999985 268999999999999999999999875
No 186
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=93.29 E-value=0.49 Score=36.30 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=55.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.....|.|=.+|..+|-.||..+++.+ ..|..++++++.. -.++-...+.|.+.++|+.-... |+..++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~ 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC
Confidence 356789999999999999999999765 4788999998532 12366799999999999998865 666554
No 187
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.22 E-value=0.63 Score=36.90 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhh
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~ 126 (423)
......|.|-.+|..+|-.||..+++.+- .|..++|+++.. -.++-...+.|.+.+.|..-...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34567799999999999999999997663 588999998532 13466899999999999998873
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.19 E-value=0.39 Score=41.83 Aligned_cols=70 Identities=6% Similarity=0.070 Sum_probs=56.9
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
......|.|-.+|..+|-.||..+++.+- .|.+++++++... .++-...+.|.+.++|...... ||..++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 34678899999999999999999998764 5899999985321 2456799999999999999876 766664
No 189
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.14 E-value=0.17 Score=43.17 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.....|.|=.+|..+|..||..+++.+- .|..++|+++.. -.++-...+.|.+.+.|+.-...+||..|..-
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3467899999999999999999997654 688899987531 13455789999999999999999999998743
No 190
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=93.12 E-value=0.16 Score=40.71 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCccEEEEEecCC------CCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPN------YLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~------~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+-+.+|.|-.+|. .++-.+|..+++.+- .|..++|+++.. -.++-...+.|.+.+.|..-...+||..|..
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4468899999999 999999999887653 788999998653 1345688999999999999999999999874
No 191
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=93.11 E-value=0.3 Score=38.11 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=55.1
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|=.+|..+|-.|+..++..+- .|..++++++... ..+-...++|.+.+.|..-...+||..|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSC-BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 47899999999999999999998763 2555566653321 245679999999999999999999998864
No 192
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=93.06 E-value=0.36 Score=43.22 Aligned_cols=71 Identities=6% Similarity=-0.003 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+- .|..++|+++..-.++-.+.++|.+.++|..-...+||..|..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3467899999999999999999987653 6788999885422345679999999999999999999998875
No 193
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.05 E-value=0.52 Score=37.00 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=55.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|..++++++... ..+-...++|.+.+.|+.-...+||..|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 457899999999999999999998763 3444555553221 246689999999999999999999998864
No 194
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=92.92 E-value=0.26 Score=38.10 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
+.|.|-.+|..+|-.|+..+++.+- .|..++++++.. -.++-...+.|.+.+ |..-...+||..|+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 3588899999999999999887653 688899998532 134668999999999 9999999999998753
No 195
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=92.81 E-value=0.29 Score=38.22 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=56.2
Q ss_pred EEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 67 CIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~~~~-~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.|.|=.+|..+|-.||..+++.+- ..|..++++++.. -.++-...+.|.+.++|+.-...+||..|..-
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 477889999999999999998874 3799999999532 13466799999999999999999999988753
No 196
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.79 E-value=0.63 Score=38.24 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=58.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|=.+|..+|-.||..+++.+ -.|..++|+++.. -.++-...+.|.+.++|+.-...+||+.|..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999988765 4688999998643 1245678999999999999999999999864
No 197
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=92.70 E-value=0.34 Score=39.03 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=57.4
Q ss_pred CCccEEEEEecCCCC------CHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYL------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~m------s~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.++.|.|-.+|..+ |-.+|..+++.+- .|..++|++..+ .++-...+.|.+.++|..-...+||..|..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G-~v~~v~i~~~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS-CEEEEECCCBTT-BSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC-CEEEEEeeCCCC-CeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 346789999999988 6788888887653 588888887554 456688999999999999999999999874
No 198
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.63 E-value=0.59 Score=37.77 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=56.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
....|.|=.+|..+|-.||..|+.++- +..++|+++..-.++-...++|.+.++|+.-.. .|++.+..-
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC--CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 457899999999999999999998876 349999986422345579999999999999885 588887654
No 199
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=92.54 E-value=0.14 Score=40.47 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=55.6
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhh-CCCcCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNL-NGKRFS 133 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~-ng~~Fn 133 (423)
+.+|.|=++|..+|-.||..+++.+-..|.+++|+++.. ..+|-...+.|.+.++|..-.... |+..|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~ 71 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL 71 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC
Confidence 467999999999999999999988866799999998532 235668999999999999887654 454554
No 200
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=92.47 E-value=0.39 Score=39.53 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=57.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcCce
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVC 140 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e~C 140 (423)
....|.|-.+|..+|-.||..++..+- .|..++|+++ -...+.|.+.+.|+.-...+||..|+.-.-.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 356799999999999999999998664 6888998874 268999999999999999999999986543343
No 201
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.43 E-value=0.67 Score=38.51 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEE
Q 014500 325 EAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVI 404 (423)
Q Consensus 325 e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~ 404 (423)
..+..||..| |..++++++++.+.-.. .+....|+..|+.+++++..|-++|..=|+.-.+..-.-
T Consensus 33 qELIqEYl~L------------E~~~s~le~e~~rlr~~--~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~~~ 98 (104)
T 3s9g_A 33 QELIKEYLEL------------EKSLSRMEDENNRLRLE--SKRLDARVRELELELDRLRAENLQLLTENELHRQQERAP 98 (104)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHH--hccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 4578899999 99999998876543222 334467999999999999999999998787766655444
Q ss_pred EEEec
Q 014500 405 LFFFG 409 (423)
Q Consensus 405 ~~~~~ 409 (423)
|.-||
T Consensus 99 ~~~~~ 103 (104)
T 3s9g_A 99 LSKFG 103 (104)
T ss_dssp -----
T ss_pred hhhcC
Confidence 44443
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=92.37 E-value=0.59 Score=40.74 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=59.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC-CCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND-AMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~-~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+|-.|+..+++.+- .|..++++++. .-..+-...++|.+.++|..-...+||..|+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3468899999999999999999998653 68899999863 11346789999999999999999999998863
No 203
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.35 E-value=0.81 Score=35.99 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=54.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+-. |. ++++.. .++-...+.|.+.++|..-...+||..|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGS-VP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTC-CC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCC-EE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45678999999999999999999887633 22 456653 234478999999999999999999999875
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.21 E-value=0.7 Score=39.37 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+- .|..++++++ ++-...+.|.+.+.|+.-...+||..|..
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYG-PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHS-CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3467899999999999999999887663 6899999985 25588999999999999999999998864
No 205
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.20 E-value=1 Score=36.37 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=55.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccc--ccce-eEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSH--IDHV-EELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~--~~~I-~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|=.+|..+|-.||..+++.+ +..+ ..+++.. + .++-...+.|.+.++|......+||..|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT--G-RMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC--S-SSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC--C-ccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 346789999999999999999998776 2222 5556552 2 346689999999999999999999998864
No 206
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.17 E-value=0.27 Score=38.53 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|..+|-.||..+++.+ -.+++++..+ .++-...+.|.+.++|..-...+||..+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETT-EEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356889999999999999999999865 3444444333 346689999999999999999999988864
No 207
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.10 E-value=0.63 Score=39.72 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=55.7
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee--EEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE--ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~--~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|...|-.||..|+..+ .|. .++|+++..-..+-...++|.+.++|+.-... |++.+..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 456789999999999999999999988 566 89998754222355799999999999988876 6666654
No 208
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.10 E-value=0.55 Score=41.16 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccc-ceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~-~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+...|.|=.+|..+|-.||..+++.+-. .|..++|+++... ..+-...+.|.+.++|+.-...+||..|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5678999999999999999999987753 7999999985321 235579999999999999999999998864
No 209
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=92.10 E-value=0.6 Score=37.64 Aligned_cols=66 Identities=11% Similarity=0.131 Sum_probs=54.5
Q ss_pred CCCCccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 61 PNSRSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~-ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|...+..|.|=.+|.. +|-.||..+++.+- .|..+++ .+-...+.|.+.+.|+.....+||..|+.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3344578999999999 99999999998663 5777777 23378999999999999999999998874
No 210
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=92.06 E-value=0.41 Score=41.27 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccc--eeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDH--VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~--I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
......|.|=.+|...|-.||..|+..+-.. |..++|+++..-.++-...+.|.+.++|+.-.. .||+.++.-
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 3456889999999999999999999987443 889999985432345689999999999999888 999888754
No 211
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.05 E-value=0.46 Score=38.72 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..+++.+- .|..+++++ -...+.|.+.++|..-...+||..|+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~k-------g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFG-PMKEVKILN-------GFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEET-------TEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568899999999999999999987664 578888873 278999999999999999999999863
No 212
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.99 E-value=0.55 Score=41.28 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=58.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.+..|.|-.+|..+|-.|+..+++.+-..|..+++++++ +-...++|.+.++|..-...+||+.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 368899999999999999999998884488999998843 448999999999999999999999996
No 213
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.79 E-value=0.5 Score=35.20 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=53.0
Q ss_pred EEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 67 CIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 67 ~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.|.|=.+|..+|-.|+..+++.+- .|..++++++.. -.++-...+.|.+.++|+.-....| ..++.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 478889999999999999998663 578899988532 1346689999999999999999877 66654
No 214
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=91.65 E-value=0.47 Score=43.38 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=57.5
Q ss_pred CCccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~-~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|. .++-.||..++..+- .|..++++++. +-...++|.+.++|+.....+||..|..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G-~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYG-DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHT-CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3568899999999 999999999987663 49999999853 3359999999999999999999999864
No 215
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=91.47 E-value=0.91 Score=36.06 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=54.4
Q ss_pred CCCccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~-~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...+..|.|=.+|. .+|-.||..+++.+- .|..+++. +-...+.|.+.++|..-...+||..|..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G-~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGS-CEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578899999998 999999999998663 47777774 2378999999999999999999998863
No 216
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.41 E-value=0.72 Score=43.01 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCccEEEEEecCCCC-CHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYL-SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~m-s~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|-.+|..+ |..|+..+++.+- .|..++++++..-.++-.+.++|.+.++|..-...+||+.|+.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVH-SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSS-CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCC-CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 356789999999997 8999999998763 6888898885433457789999999999999999999999964
No 217
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.27 E-value=0.69 Score=37.56 Aligned_cols=69 Identities=7% Similarity=0.113 Sum_probs=56.4
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..++..+- .|..++|+++.. -.++-...+.|.+.+.|..-... ||..|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 357899999999999999999997653 578899998532 12455899999999999999988 8888764
No 218
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=91.25 E-value=0.52 Score=37.95 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=58.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccccc-ceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHID-HVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~-~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
+=.+|.|=.+|..+|-.+|..+++++-. .|.++|++++..+ .+|-..-++|.+.++|.+-....||...
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~ 78 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC
Confidence 3467999999999999999999999854 7899999995421 3455789999999999999999999853
No 219
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.93 E-value=1.1 Score=36.95 Aligned_cols=73 Identities=8% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCccEEEEEecCCCCCHHHHHHHhcccccceeE-EEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 61 PNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE-LIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 61 ~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~-iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
|......|.|=.+|..+|-.||..|+..+-. |.. +.+.....-..+-...+.|.+.+.|+.-.. .||..|..-
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3445688999999999999999999987743 333 223322211246689999999999999998 899988754
No 220
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.85 E-value=0.37 Score=42.41 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=56.2
Q ss_pred ccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~-~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+..|.|-.+|. .+|-.||..+++.+-. |.+++++++. +-...+.|.+.++|......+||..|..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~-i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC-CSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 57899999999 9999999999987643 8999999843 2368999999999999999999999864
No 221
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=90.76 E-value=1.1 Score=37.89 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc--cc-----eeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI--DH-----VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~--~~-----I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|=.+|..+|-.||..+++.+- .. +..+++.++. .++-...+.|.+..+|..-...+||..|..
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3467899999999999999999998773 22 3557776643 357789999999999999999999999864
No 222
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.60 E-value=0.56 Score=36.50 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=52.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCC-CcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG-KRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng-~~Fns 134 (423)
....|.|-.+|..+|-.||..+++.+-.-|..+++.. +-...+.|.+.++|+.-...+|| ..|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE------TTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC------CCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 4567999999999999999999987755455555532 33789999999999999999999 77753
No 223
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.59 E-value=0.72 Score=37.66 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=54.5
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
++.|.|=.+|..+|-.||..+++.+- .|..++|.+ ++-...+.|.+.++|+.=...+||..|...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFG-SLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 57899999999999999999987653 567777765 334699999999999999999999999743
No 224
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=90.58 E-value=0.96 Score=42.03 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccc-cceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHI-DHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~-~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
++...|.|-.+|..+|-.||..++..+- ..|..++|+++... .++-...+.|.+.++|+.-...+||+.|..
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 3567799999999999999999998774 38999999995321 245679999999999999999999998874
No 225
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.57 E-value=1.7 Score=37.67 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=55.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..++..+ ..|..++++++.. -.++-...++|.+.++|..-... ||..|+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 34789999999999999999999765 4689999998632 12466799999999999988876 7777764
No 226
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.49 E-value=0.86 Score=41.08 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=59.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.||..+++.+ ..|..++|+++.+ .++-...++|.+.++|..=...+||..++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF-GNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccceECCcccccHHHHHHHHHhhc-CCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4579999999999999999998766 3688999999654 357789999999999999999999998864
No 227
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=90.35 E-value=0.96 Score=37.28 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=54.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
.+.+|.|=.+|...|-.||...+++| -.|..+++++. |-...+.|.+.++|..-...+||.++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 46789999999999999999998877 46888999873 33799999999999999999998874
No 228
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=90.34 E-value=0.81 Score=42.86 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=58.1
Q ss_pred CccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCC--CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~-ms~~d~l~F~~~~~~~I~~iriir~~~--~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|.. +|-.||..+++.+ ..|..++++++.. -.++-.+.++|.+.++|..-. ..||+.|..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT
T ss_pred CCceEEEECCCcccCCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC
Confidence 4578999999999 9999999999865 4688899988542 234678999999999999999 999998864
No 229
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.27 E-value=1.3 Score=40.39 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=58.2
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.+..|.|-.+|..+|-.|+..+++.+-..|..+++++.+ +-...++|.+.++|..-...+||+.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS----TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC----CcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 367899999999999999999999884489999998743 347999999999999999999999996
No 230
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=89.81 E-value=0.71 Score=39.06 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=54.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhh---hCCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSN---LNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~---~ng~~F 132 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..++++++.. -.++-...+.|.+.++|+..... ++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc
Confidence 357899999999999999999998664 689999998531 12455789999999999999886 555544
No 231
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.67 E-value=0.55 Score=37.80 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCCCCccccccc-CCCCCcceeecCCCccchhhhhc-cc
Q 014500 166 ELPTCPICLERL-DPDTSGILSTICDHSFQCSCTAK-WT 202 (423)
Q Consensus 166 ElptCpICLE~l-d~~~~gi~t~~C~H~Fh~~Cl~k-W~ 202 (423)
|..+|+||++.+ .+.+ ..-+.|+|+|+..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av--~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAV--KTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCC--EEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCce--EECCcCChHHhHHHCHHHhc
Confidence 568999999863 3321 11289999999999998 65
No 232
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=89.60 E-value=1.3 Score=41.24 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=58.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.|+..+++.+- .|..++++++.. -.++-...++|.+.++|..-...+||..++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFG-SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcC-CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 457899999999999999999998764 489999998532 1246679999999999999999999998864
No 233
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=89.50 E-value=1.7 Score=34.02 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=53.6
Q ss_pred CccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~-~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|. .+|-.||..++..+- .|..+++.+ -...+.|.+.++|..-...+||..|..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINIKN-------AFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTC-CCCEEEEET-------TEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 467899999998 999999999998763 477777753 278999999999999999999999864
No 234
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=89.04 E-value=1.6 Score=39.24 Aligned_cols=72 Identities=6% Similarity=0.013 Sum_probs=57.9
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....+.|.|=.+|..+|-.||..+++.+ -.|.+++|+++... .++-...+.|.+.++|..-....||..+..
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPA-GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhh-CCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 3345789999999999999999998766 36899999985321 235578999999999999999999988764
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.00 E-value=2.3 Score=34.66 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=52.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCc
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~ 131 (423)
.+..|.|=.+|..+|-.||..++++|- .|..+++++. +-...+.|.+.++|..-...+|+..
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG-~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 367899999999999999999988764 6777888873 3478999999999999998887765
No 236
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=88.88 E-value=0.61 Score=34.60 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=51.0
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
|.|=.+|..+|-.|+..+++.+- .|..++++++.. -.++-...+.|.+.++|+.-... ||..++.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 66778999999999999987653 478888887532 13466799999999999999886 7766653
No 237
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.83 E-value=1.4 Score=35.91 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=53.7
Q ss_pred EEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC--CCCceE-EEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 68 IFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA--MEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 68 lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~--~p~~ym-vLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
|.|=-+|..||-++|+.-+++.. .+.-.+.+..+. -|+.|+ +-|.|.+.+++.+|...|+|..|-.-
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred EEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 45667899999999999999874 466677776441 245665 89999999999999999999999643
No 238
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.62 E-value=0.71 Score=43.27 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=57.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.+|..+++.+-..|..++++++....++-...+.|.+.+.|..-...+||..+..
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999877558899999885432346689999999999999999999999864
No 239
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=88.44 E-value=1.3 Score=37.30 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
...|.|-.+|..+|..||..+++.+- .|..++++++.. -.++-.+.++|.+.++|..-.. .||..|+.-
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWG-TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTS-CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCc-cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 46799999999999999999998663 688899988531 2346689999999999998887 688877643
No 240
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.37 E-value=1.4 Score=41.07 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=56.4
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.+|..+|-.||..++..+- .|..+++.++ +-...+.|.+.++|+.....+||..+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYG-EPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGC-CCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 3467899999999999999999997663 5888888774 3379999999999999999999998864
No 241
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=88.33 E-value=1.1 Score=38.43 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=55.0
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-.+|..+|-.||..+++.+ -.+++++..+ .++-...++|.+.++|..-...+||+.|..
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDG-KSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSS-SCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCC-CCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999999999999999999854 4566664333 456689999999999999999999998864
No 242
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=88.21 E-value=1.1 Score=36.38 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=52.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.....|.|=.+|..+|-.||..+++.+ ..|..++|+++.. -.++-...+.|.+.++|+.-.... |..|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQF-GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcc-CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 356789999999999999999999866 3588999998532 134568999999999999998764 34444
No 243
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.03 E-value=2.5 Score=39.29 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=56.7
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
.+..|.|-.+|..+|-.||..+++.+- .|..++++++..-.++-...++|.+.++|..-...+|+..|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 457899999999999999999987654 78899999864334567899999999999999999965555
No 244
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=87.74 E-value=1.6 Score=36.92 Aligned_cols=65 Identities=9% Similarity=0.190 Sum_probs=53.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhccc---cc-------ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSH---ID-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~---~~-------~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.+..|.|-.+|..+|-.||..++..+ .. .|..+++.+. +-...++|.+.++|+... .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 45789999999999999999999876 12 6777777663 347889999999999999 89999886
Q ss_pred C
Q 014500 134 P 134 (423)
Q Consensus 134 s 134 (423)
.
T Consensus 77 g 77 (172)
T 2g4b_A 77 G 77 (172)
T ss_dssp T
T ss_pred C
Confidence 4
No 245
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.52 E-value=3.4 Score=32.06 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=51.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..+++.+- .|.++ +.+.. ..+ ...+.|.+.+.|+.-.. .||..|+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v--~~~~~-~g~-~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-PVASV--VMDKD-KGV-FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS-CEEEE--EECSS-SCC-EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CeEEE--EEcCC-CCc-EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 356799999999999999999998763 34555 33222 334 89999999999999999 99998874
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=87.18 E-value=0.57 Score=37.04 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=50.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec--CCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN--DAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~--~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..++..+-.-.. +++++ .+ .++-...+.|.+.++|+.... +||..|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 4678999999999999999999887633222 33332 12 234478999999999999998 99998874
No 247
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=87.13 E-value=2.1 Score=38.55 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=54.7
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
...|.|-++|...|..++..+++.+- .|..++|+++.....+-.+.+.|.+.++|.......|. .|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~ 175 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYK 175 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eEC
Confidence 47899999999999999999998764 48999999854333466899999999999999876554 444
No 248
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.94 E-value=1.4 Score=37.28 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccc---ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHID---HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~---~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.....|.|=.+|...|-.||..|+..+-. .|..++|+++..-..+-...++|.+.+.|+.=... |++.+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 45678999999999999999999988743 57889999853212355789999999999998887 8877764
No 249
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.84 E-value=2.9 Score=33.88 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=50.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng 129 (423)
.+..|.|=.+|..+|-.||..++.+|- .|..++++++ +-...+.|.+.+.|..-...+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG-~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFG-KVTNILMLKG-----KNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 467899999999999999999987763 5778888873 44799999999999998887754
No 250
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=86.57 E-value=1.5 Score=36.45 Aligned_cols=68 Identities=12% Similarity=-0.000 Sum_probs=56.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|=.+|..+|-.||..++..+-..|..++|...+ ++-...+.|.+.++|+.=...+||..|..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~---~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD---FDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS---SSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC---CCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457899999999999999999998775478888886422 34468999999999999999999998874
No 251
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.46 E-value=8.4 Score=29.70 Aligned_cols=69 Identities=10% Similarity=0.213 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.+=+..|..+|..+...-.+.=-.||..+++++.....+.-.+ -+.....+..+...+..+.-|++.|+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~--l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDA--LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446789999999998888887889999999887654332111 12233445555555555555555543
No 252
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.19 E-value=1.2 Score=36.30 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=52.1
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC----CCceEEEEEeCChhhHHHHHhhh---CCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM----EDRYSVLIKLVDQLTADEFYSNL---NGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~----p~~ymvLikF~~q~~AdeF~~~~---ng~~F 132 (423)
.+..|.|=.+|..+|-.||..+++.+- .|. ++++++... .++-...+.|.+.++|+.-.... ||+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFG-PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTC-CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 456799999999999999999998774 344 677764422 34668999999999998877766 77766
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=85.95 E-value=3.1 Score=37.34 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+...|.|-.+|..+|-.+|.+.++.+ -.|..++|.+. .++....++|.+.++|++=....||+.|..
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~f-G~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHH-SCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 344557788899999999999988766 46888888763 257889999999999999999999999853
No 254
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=85.80 E-value=2 Score=39.98 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=56.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.+..|.|-.+|..+|-.||..+++.+ ..|..++++++. +-...++|.+.++|..-...+||..|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~-G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF-PGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc-CCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 46789999999999999999998765 478889998743 348999999999999999999999887
No 255
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.47 E-value=6.3 Score=33.39 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=52.7
Q ss_pred cEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 66 TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 66 ~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..|.|-.+|..+|-.+|...++.+ -.|..++|++. ..+...++|.+.++|..=....||..+..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y-G~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV-GKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT-SCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc-CCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 335578899999999999988866 35888888763 24679999999999999999999998864
No 256
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=85.36 E-value=2.9 Score=38.78 Aligned_cols=68 Identities=12% Similarity=0.237 Sum_probs=55.9
Q ss_pred CccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l----~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|-.+|..+|-.||. .++..+ ..|.+++++++ + .++-...++|.+.++|..-...+||..|..
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~-G~i~~v~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQF-GQILDILVSRS-L-KMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcCC-C-CcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 46789999999999999965 444433 47888999884 3 467789999999999999999999988864
No 257
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=85.27 E-value=1.6 Score=36.46 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeE--EEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGK 130 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~--iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~ 130 (423)
.....|.|-.+|..+|-.||..++..+- .|.. ++|+++.. -.++-...+.|.+. .|..-...+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G-~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA-VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC-CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC-CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 3467899999999999999999988663 4433 89998541 12456788999999 999999999998
No 258
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=84.83 E-value=5 Score=33.88 Aligned_cols=69 Identities=13% Similarity=0.276 Sum_probs=53.4
Q ss_pred CccEEEEEecCCCCCHHHHHH----HhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVR----FCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~----F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.+..|.|=.+|..++..|+-. +++.+ ..|..+++.++. .++-...+.|.+.++|+.-....||..|..-
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G~I~~v~i~~~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ-GDILDIVVDLSD--DNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-SCEEEEEECCCC--SSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-CCeEEEEeccCC--CcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 357899999999999988653 33333 367778887643 3466789999999999999999999988643
No 259
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=84.93 E-value=0.19 Score=41.14 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=55.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeE--------EEEeecCC-CCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE--------LIFIRNDA-MEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~--------iriir~~~-~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+..|.|=.+|..+|-.||..+++.+- .|.. ++|+++.. -.++-...+.|.+.++|+.-...+||..|..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 456789999999999999999988663 3444 77777421 1235578999999999999999999998874
No 260
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.44 E-value=2.5 Score=34.55 Aligned_cols=62 Identities=3% Similarity=0.050 Sum_probs=52.6
Q ss_pred CccEEEEEecCC-CCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCc
Q 014500 64 RSTCIFVVAVPN-YLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (423)
Q Consensus 64 ~~~~lcilaVP~-~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~ 131 (423)
.+..|.|=.+|. .+|-.||..++.+|- .|..++|+++. -...++|.+.++|..-...+||..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG-~V~~v~i~~~k-----g~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILNKI-----NEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECSSS-----SCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC-CEEEEEEEcCC-----CEEEEEECCHHHHHHHHHHHcCCC
Confidence 468899999999 999999999888774 58899998842 258999999999999999888764
No 261
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.22 E-value=1.6 Score=33.57 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHH
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADE 122 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~Ade 122 (423)
.+..|.|=.+|..+|-.||..+++.+- .|..++|+++ ++-...+.|.+.++|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG-DVMDVFIPKP----FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS-CCCEEECCSS----CCSCCEEECSCHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEEecC----CCCEEEEEECCHHHHHH
Confidence 457899999999999999999998763 4888998874 35578999999999974
No 262
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=83.87 E-value=1 Score=38.89 Aligned_cols=70 Identities=6% Similarity=0.046 Sum_probs=55.8
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
.....|.|=.+|...|-.||..|+..+- |..++|+++..-.++-...++|.+.++|+.-. ..|+..+..-
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC--CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 3456799999999999999999999875 55899998543223557899999999999988 6788887653
No 263
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.10 E-value=2.8 Score=44.14 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhccHHH-----------HHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKR---------ESLIPET-----------VEKAVASKMQDIQNE 379 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~---------~~~i~~~-----------~~k~~~~k~~~lq~k 379 (423)
...+|+.|..+|.++-.+--+. -.||+.+.+.++.+. -.+|+++ +...+ ++++.||..
T Consensus 62 ltkrINELKnqLEdlsKnsKds-eqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsn 139 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDS-HSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHH-HHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3567888888888882222222 245666666553221 1223333 23334 778889999
Q ss_pred HHHHHHHHHHHH-HHhhhhc
Q 014500 380 LDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 380 l~~~~~E~~~l~-~ln~~L~ 398 (423)
|++...|||.|+ +|--.|.
T Consensus 140 Ledq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 7655544
No 264
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=82.80 E-value=2.7 Score=42.97 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=57.3
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
...|.|-.+|..+|-.+|..+++.| -.|..++|+.+... ..+-.+.|.|.+..+|..-...+||..|..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 4689999999999999999998765 36888999875211 235579999999999999999999998864
No 265
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=82.77 E-value=4.1 Score=36.87 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=61.0
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccc-eeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcCce
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDH-VEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAEVC 140 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~-I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e~C 140 (423)
+..|.|-.+|..+|-.||..+++++-.- +..++++++.+ ..+-...++|.+.+.|..=....||..++.-.....
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 5689999999999999999998876543 38899988543 234689999999999999999999999876554433
No 266
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=82.29 E-value=7.6 Score=31.53 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=51.5
Q ss_pred ccEEEEEecCCC-----CCHHHHHHHhcccccceeEEEEeecCCC--CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNY-----LSSDEFVRFCGSHIDHVEELIFIRNDAM--EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~-----ms~~d~l~F~~~~~~~I~~iriir~~~~--p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.+|.|..+.+- -+-.|+...++.+ -.|.+++|.++... ..+--+-++|.+.++|..=....||+.|+.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~-G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKY-GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGG-SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhc-CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456777766531 1456777776544 47999999985321 347789999999999999999999999974
No 267
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=82.16 E-value=3 Score=36.08 Aligned_cols=64 Identities=9% Similarity=0.230 Sum_probs=52.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccc---c-------ceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHI---D-------HVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~---~-------~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+..|.|-.+|..+|-.||..++..+- . .|..+++.+. +-...+.|.+.++|+... .+||..|..
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-----~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-----TTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-----CCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 46799999999999999999998761 2 5667766553 336899999999999999 899998864
No 268
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.43 E-value=11 Score=29.30 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=50.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
....|.|-. ..+|-.||..++..+- .|..++|.+ ++-...+.|.+.++|+.-...+||..|..
T Consensus 14 ~~~~l~V~n--~~~t~~~l~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 14 KGNTLYVYG--EDMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCSEEEEEC--SSCCHHHHHHHHTTTS-CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEcC--CCCCHHHHHHHHhhCC-CEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 456788877 3899999999987664 578888854 23378999999999999999999998863
No 269
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=80.84 E-value=1.3 Score=36.76 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.6
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecC--CCCCceE-EEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRND--AMEDRYS-VLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~--~~p~~ym-vLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
+.-|.|=-+|..||-++|+.-+++..+ +.-.+.+..+ .-+++|+ +-|.|.++++..+|.+.|+|..|-.-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA-HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS-EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc-cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 344778889999999999999998644 4445555422 1245554 89999999999999999999999543
No 270
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.92 E-value=6.3 Score=32.55 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=50.8
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng 129 (423)
.+..|.|=.+|..+|-.||..++++|- .|..++|+++ +-...+.|.+.++|..-...+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 357899999999999999999887664 5899999984 33789999999999998887765
No 271
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=79.56 E-value=4.8 Score=31.32 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=48.9
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
....|.|=.+|..+|-.||..+++.+ ..|.+++|+++ +|-..-+.|.+.++|++ .||+.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~ 69 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDL 69 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCc
Confidence 45789999999999999999998866 35888999883 45688999999999983 566644
No 272
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.15 E-value=5.9 Score=33.82 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=55.3
Q ss_pred CCCccEEEEEecCCCCCHHHHHHHhccc----ccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCC
Q 014500 62 NSRSTCIFVVAVPNYLSSDEFVRFCGSH----IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFS 133 (423)
Q Consensus 62 ~~~~~~lcilaVP~~ms~~d~l~F~~~~----~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fn 133 (423)
.....+++++.+|--++.+-+..|+.++ ...|..|.++. +.--++++|.|...|..---..||..|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-----DH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-----DFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-----TTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-----CCCceEEEEccchhhHHHHhhcCCeeec
Confidence 3456899999999999999999999877 24566665554 2337999999999999999999999987
No 273
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=78.88 E-value=1.3 Score=34.83 Aligned_cols=40 Identities=20% Similarity=0.490 Sum_probs=32.3
Q ss_pred CCCCcCCCCC---CCceeeecccCcccccCCcchhhhh-hhhcC---CCce
Q 014500 217 ERPTCSVCGT---VENLWVCLICGFVGCGRYKEGHAVR-HWKDT---QHWY 260 (423)
Q Consensus 217 ~~~~C~~C~~---~~~lWiCL~CG~vgCgRy~~~HA~~-H~e~t---~H~l 260 (423)
....|+.|.. ..+...||.|....| ..|... |.+.. .|.+
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCCCSSSCSCCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCCCCCCCCCcc
Confidence 4678999975 457899999999999 799997 97654 6765
No 274
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.81 E-value=5 Score=33.80 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=51.5
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGK 130 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~ 130 (423)
.+..|.|=.+|..+|-.||..++++|- .|..++|+++ +-...+.|.+.++|..-...+|+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG-~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTS-CCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 367899999999999999999988763 5888899884 347899999999999998887753
No 275
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=78.25 E-value=9.5 Score=31.54 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|-.. .+|-.||..+++.+- .|..+++.+ ++-...+.|.+.++|..-...+||..|..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G-~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC-CCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC-CEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34677888873 699999999987663 467777764 23378999999999999999999998864
No 276
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.50 E-value=3.9 Score=34.02 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=29.7
Q ss_pred CCCCCCCcccccccCCCC-----CcceeecCCCccchhhhhcc---------cccCcccccc
Q 014500 164 FTELPTCPICLERLDPDT-----SGILSTICDHSFQCSCTAKW---------TVLSCQVCRF 211 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~-----~gi~t~~C~H~Fh~~Cl~kW---------~~~~CPvCR~ 211 (423)
++..+.|.+|+..=+... .-+.=..|+..||..|+..+ .+..||.|+.
T Consensus 2 v~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 2 MEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CCCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 356889999987532111 11223468999999999532 2345777763
No 277
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.42 E-value=4.2 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=53.8
Q ss_pred ccEEEE--EecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC-CCCC
Q 014500 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF-SPAE 136 (423)
Q Consensus 65 ~~~lci--laVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F-nsle 136 (423)
+..|.| -++|..+|-.||...++.+- .|..++|++ +|--.-+.|.+.++|++=....||+.+ +.+.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 456888 66999999999999888775 677777764 244688999999999999999999988 6554
No 278
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.09 E-value=5.6 Score=33.17 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=50.9
Q ss_pred ccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCc
Q 014500 65 STCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKR 131 (423)
Q Consensus 65 ~~~lcilaVP~~-ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~ 131 (423)
+..|.|=.+|.. +|-.||..++.+|- .|..++|++. +-...+.|.+.++|..-...+|+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG-~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKA 86 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcC-CEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCC
Confidence 678999999998 99999999887763 5888899873 3378999999999999988876543
No 279
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=73.49 E-value=6.8 Score=31.77 Aligned_cols=69 Identities=12% Similarity=0.271 Sum_probs=48.9
Q ss_pred ccEEEEEec--CCCCCH--------HHHHHHhcccccceeEEEEeecCCC---CCceEEEEEeCChhhHHHHHhhhCCCc
Q 014500 65 STCIFVVAV--PNYLSS--------DEFVRFCGSHIDHVEELIFIRNDAM---EDRYSVLIKLVDQLTADEFYSNLNGKR 131 (423)
Q Consensus 65 ~~~lcilaV--P~~ms~--------~d~l~F~~~~~~~I~~iriir~~~~---p~~ymvLikF~~q~~AdeF~~~~ng~~ 131 (423)
+++|++..+ |..+.- .|+...++. .-.|.+++|.++... +.+--+-++|.+.++|..=....||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 567777766 433321 344444432 347999999985421 245689999999999999999999999
Q ss_pred CCC
Q 014500 132 FSP 134 (423)
Q Consensus 132 Fns 134 (423)
|+.
T Consensus 84 f~G 86 (105)
T 3v4m_A 84 FAN 86 (105)
T ss_dssp ETT
T ss_pred eCC
Confidence 974
No 280
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.49 E-value=6.8 Score=32.19 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~ 202 (423)
.+...|.+|.+.=+.. .-+.=..|...||..|+..+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCcc
Confidence 4577899998764321 112235788999999997654
No 281
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=72.48 E-value=7.1 Score=31.53 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=37.3
Q ss_pred cceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 91 DHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 91 ~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
-.|..++|.++.....+--+-++|.+.++|..=....||+.|+.
T Consensus 52 G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 52 GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 47999999986533346789999999999999999999999975
No 282
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=72.40 E-value=1.9 Score=36.81 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhccccccee-EEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVE-ELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~-~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
..+..|.|=.+|..+|-.||..++..+-.... .++-.++ + .++-...+.|.+.++|+.-. .+||..+..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~-~-~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-G-TNRKFGYVDFESAEDLEKAL-ELTGLKVFG 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE-E-TTTTEEEEEESSHHHHHHHH-HGGGEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC-C-ccccEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 45688999999999999999988876622111 1222222 1 24557899999999999999 599998873
No 283
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.11 E-value=4.8 Score=33.57 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=26.8
Q ss_pred CCCcccccccCC------CCCcceeecCCCccchhhhhccc---------ccCccccc
Q 014500 168 PTCPICLERLDP------DTSGILSTICDHSFQCSCTAKWT---------VLSCQVCR 210 (423)
Q Consensus 168 ptCpICLE~ld~------~~~gi~t~~C~H~Fh~~Cl~kW~---------~~~CPvCR 210 (423)
+.|.+|+..-.. ...-+.=..|..+||..|+..+. ...||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 579999875421 11112235789999999997541 34577775
No 284
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=71.98 E-value=31 Score=29.42 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=54.6
Q ss_pred CccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+-..|.|-.+|..+|-.+|-+.++.+ -.|..++|++.. ..+-..+.|.+.+.|..=....||+.|..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~y-G~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKF-GTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTS-SCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCc-CCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 34456688899999999999888765 357788888742 46679999999999999999999999864
No 285
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=71.74 E-value=6.3 Score=30.02 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=27.6
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc------ccCcccccc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRF 211 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~------~~~CPvCR~ 211 (423)
......|.||.+.= .-+.=-.|...||..|+.... +..||.|+.
T Consensus 9 ~~~~~~C~vC~~~~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDGT----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCCT----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCCcCCCCCCC----eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 34566799997531 113334688999999997643 234565543
No 286
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=70.46 E-value=19 Score=38.29 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRESL---IPETVEKAVASKMQD--------IQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~~~---i~~~~~k~~~~k~~~--------lq~kl~~~~~E~~~l~~ln~ 395 (423)
-+...+|.|.+=|++.+.+++++.+++ +.++.++.+..|++. .+.+.+.+.+|++.|+.-+.
T Consensus 512 ~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345568889999999999877755433 223336677777766 45666777888888875443
No 287
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.66 E-value=23 Score=33.31 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh-------c--cCCcEEEEEeccc-cceeeeee
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPLT-------T--HFRSVILFFFGGV-GGCYLMLL 419 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L-------~--~~~~~~~~~~~~~-~~~~~~~~ 419 (423)
.+...+..++.++..+.++.+.|. .|...| . ++..++..+-||+ |||++.|-
T Consensus 147 ~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lp 209 (256)
T 3na7_A 147 LVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLN 209 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeC
Confidence 344455555566666655555443 332222 1 2556677777774 88998763
No 288
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=69.55 E-value=13 Score=33.51 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=56.0
Q ss_pred CccEEEEEecC-CCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 64 RSTCIFVVAVP-NYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 64 ~~~~lcilaVP-~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+.+|.|=.+| ..+|..+|..+++.+ -.|..++|+++. +-...+.|.+.++|+.=....||..|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~-G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY-GNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT-SCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999 899999999988654 478899999842 3468999999999999999999999874
No 289
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=68.45 E-value=27 Score=27.60 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQ--LETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKK 388 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQ--Le~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~ 388 (423)
.+-+|++..||++||.++ |.-.|.=.-.+++++..+.+ .+.++ -.++.+-.++++.++..+++|.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e-~l~~E-l~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD-VLQGE-LEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999998875 55555433333333333221 12222 23444455566666666666554
No 290
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.51 E-value=38 Score=26.98 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIP--ETVE----------KAVASKMQDIQNELDICEEAK 387 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~--~~~~----------k~~~~k~~~lq~kl~~~~~E~ 387 (423)
.+.+++.+..+-. +|+.|+.-....++..+.+-+.++. ..+| ..++..--+|+.+++.+.+|+
T Consensus 5 Lr~qi~~l~~e~~-----~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 5 LRRQVDQLTNDKA-----RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777766644 4456666666666666554443322 1212 123344468999999999999
Q ss_pred HHHHHH
Q 014500 388 KAVADV 393 (423)
Q Consensus 388 ~~l~~l 393 (423)
.|||.+
T Consensus 80 ~fLkk~ 85 (86)
T 3swk_A 80 AFLKKL 85 (86)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 999854
No 291
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=67.21 E-value=33 Score=28.43 Aligned_cols=33 Identities=6% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccC
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPLTTHF 400 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~~ 400 (423)
..+.+|+..|.+++...+|++.+. ++..+|.|+
T Consensus 59 qh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~ 92 (114)
T 2xzr_A 59 QHSARLDSQQRQINENHKEMKQIEDKIEEILSKI 92 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357799999999999999998887 777776653
No 292
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=65.75 E-value=19 Score=29.76 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=47.0
Q ss_pred ccEEEEEecCCCCC------HHHH----HHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLS------SDEF----VRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms------~~d~----l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.+|++..+=.-.. ..|+ ...++. .-.|.+++|.++. .+--+-++|.+.++|..-....||+.|+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56677766644332 2333 333322 3478899998853 25579999999999999999999999985
Q ss_pred C
Q 014500 135 A 135 (423)
Q Consensus 135 l 135 (423)
-
T Consensus 83 R 83 (114)
T 3s6e_A 83 K 83 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 293
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.82 E-value=18 Score=29.11 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 372 KMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
.-.+|...++.+.+|+..|++.|+-|.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777776654
No 294
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=62.74 E-value=20 Score=31.32 Aligned_cols=68 Identities=10% Similarity=-0.044 Sum_probs=51.3
Q ss_pred cEEEEEec----CCCCCHHHHHHHhcccccceeEEEEeecCCC-CCceEEEEEeCC----hhh----HHHHHh--hhCCC
Q 014500 66 TCIFVVAV----PNYLSSDEFVRFCGSHIDHVEELIFIRNDAM-EDRYSVLIKLVD----QLT----ADEFYS--NLNGK 130 (423)
Q Consensus 66 ~~lcilaV----P~~ms~~d~l~F~~~~~~~I~~iriir~~~~-p~~ymvLikF~~----q~~----AdeF~~--~~ng~ 130 (423)
+-|.|=.+ |..+|-.++..++++|- .|.+++++.+..+ -.+....++|.| ... |..... ..||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 34778888 99999999999998665 8999999985532 247899999986 322 677766 56888
Q ss_pred cCCC
Q 014500 131 RFSP 134 (423)
Q Consensus 131 ~Fns 134 (423)
.++.
T Consensus 82 ~I~G 85 (136)
T 2j8a_A 82 FIMG 85 (136)
T ss_dssp EETT
T ss_pred eecC
Confidence 7764
No 295
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.84 E-value=18 Score=29.20 Aligned_cols=41 Identities=7% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
.+......|+.+++.+.+|.+.|+.| |.+..+- |+++.|+|
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~l---l~~~p~~---~~~~~~~~ 87 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNL---FKQLPEP---LLASSGHC 87 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCcHH---HhccccCC
Confidence 34566777888888888888887754 3333333 44778877
No 296
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=60.43 E-value=6.3 Score=31.40 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=30.3
Q ss_pred CCCCcCCCCC---CCceeeecccCcccccCCcchhhhh-hhhc---CCCcee
Q 014500 217 ERPTCSVCGT---VENLWVCLICGFVGCGRYKEGHAVR-HWKD---TQHWYS 261 (423)
Q Consensus 217 ~~~~C~~C~~---~~~lWiCL~CG~vgCgRy~~~HA~~-H~e~---t~H~la 261 (423)
+...|+.|.. .++...|+.|++..| ..|... |... ..|.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C----~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCSCSSSTTCCBS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHh----HHHCHHHhccCCccCCCeee
Confidence 3567888874 467889999999999 688887 7532 256554
No 297
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.35 E-value=5.1 Score=31.04 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=21.4
Q ss_pred CCCCcCCCCCCCce-----eeecccCcccccC
Q 014500 217 ERPTCSVCGTVENL-----WVCLICGFVGCGR 243 (423)
Q Consensus 217 ~~~~C~~C~~~~~l-----WiCL~CG~vgCgR 243 (423)
...+|..|.....+ ..| -||..+|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 45789999988765 589 999999973
No 298
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=59.67 E-value=69 Score=26.00 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 329 DEYNRLLATQLETQRQYYESLLAEAKSKRE----------SLIPETVEK------AVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 329 ~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~----------~~i~~~~~k------~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.+|=.-|..+.|.+-..|+..|+++|+.-. +.|...+.+ ++..|++.|.+.+++.+++=-.++
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778899999999999999999998522 234444333 456778888888777777655544
No 299
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.23 E-value=6.8 Score=30.08 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=20.1
Q ss_pred CCCCcCCCCCCCce--eeecccCccccc
Q 014500 217 ERPTCSVCGTVENL--WVCLICGFVGCG 242 (423)
Q Consensus 217 ~~~~C~~C~~~~~l--WiCL~CG~vgCg 242 (423)
...+|..|.....+ ..| .||..+|+
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCG 40 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecc
Confidence 45789999987543 789 89999997
No 300
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=59.18 E-value=4.7 Score=44.76 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=29.2
Q ss_pred CCceeeecccCcccccCCcchhhhhhhhcCCCceeeeC
Q 014500 227 VENLWVCLICGFVGCGRYKEGHAVRHWKDTQHWYSLDL 264 (423)
Q Consensus 227 ~~~lWiCL~CG~vgCgRy~~~HA~~H~e~t~H~lal~l 264 (423)
...|.+||.|-..+| ..|+..|++.++|++.+.+
T Consensus 59 ~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~i 92 (854)
T 3ihp_A 59 EGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLHL 92 (854)
T ss_dssp TTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEEE
T ss_pred CCCeEEccccccccc----HHHHHHHHhccCCceEEEE
Confidence 357999999999888 5899999999999987743
No 301
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=58.75 E-value=66 Score=28.31 Aligned_cols=60 Identities=25% Similarity=0.482 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 327 IVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 327 i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
+..||+..|..+++..++- ..+|..........+.++ ..+++.-+.|++++..-++.|++
T Consensus 83 ~L~eYn~rL~~E~~dR~~L-~~~L~~~~~~~~~~l~e~-----e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQL-ARMLVEYTQNQKDVLSEK-----EKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999887665 344444444333334333 44556667777777766666663
No 302
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=58.41 E-value=37 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEA 353 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~ 353 (423)
..+.+.+|..||..| -+.|.||-==|..+.+.
T Consensus 7 i~~~l~~Leae~q~L--~~~E~qry~~eka~AE~ 38 (119)
T 3etw_A 7 LVGELQALDAEYQNL--ANQEEARFNEERAQADA 38 (119)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 467788899999988 56666665444444443
No 303
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.31 E-value=55 Score=26.05 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=47.8
Q ss_pred CccEEEEEecCCCCC-----------HHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 64 RSTCIFVVAVPNYLS-----------SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 64 ~~~~lcilaVP~~ms-----------~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
.+.+|.|..+..... -.||..+++.+ -.|..+.| . +.. .+-.+.++|.+.+.|..=....||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~-G~v~~v~i-~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF-GQIRKLLL-F-DRH-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT-SCCSEEEE-E-TTC-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc-CCEeEEEE-e-cCC-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 467788887743332 24666777655 36777755 4 222 466799999999999999999999999
Q ss_pred CC
Q 014500 133 SP 134 (423)
Q Consensus 133 ns 134 (423)
+.
T Consensus 90 ~g 91 (112)
T 2dit_A 90 GG 91 (112)
T ss_dssp TT
T ss_pred CC
Confidence 73
No 304
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=58.29 E-value=20 Score=29.02 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc
Q 014500 160 PPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 160 ~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~ 202 (423)
|.......+.|+||----.++ -+.--.|+-+||..|+.+-.
T Consensus 8 ~~e~~~~D~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 8 PREPVVNDEMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRMG 48 (89)
T ss_dssp SCCCCCCSCCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHHT
T ss_pred cccCCCCCcccCccccccccc--eeccccccccccHhhccccc
Confidence 334456789999998443332 12234689999999998753
No 305
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.99 E-value=56 Score=33.61 Aligned_cols=19 Identities=0% Similarity=0.020 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l 390 (423)
++++.++++.++++|.+.+
T Consensus 552 ~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHH
Confidence 3333334444444444333
No 306
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.74 E-value=15 Score=30.60 Aligned_cols=30 Identities=3% Similarity=-0.036 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 014500 373 MQDIQNELDICEEAKKAVADVNPLTTHFRS 402 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~ 402 (423)
.+..+..++++.+|...|+..+..|..+.+
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg~~ 99 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRGLLRAMERGGT 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 355667888888888889888888877543
No 307
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=57.36 E-value=14 Score=23.72 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDIC 383 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~ 383 (423)
++.+|+|.|.+||+.+
T Consensus 12 alesklqalekkleal 27 (31)
T 3ljm_A 12 ALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666543
No 308
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.79 E-value=18 Score=28.86 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~ 398 (423)
...|+.++-.+...| |+++..++...+..-.+. .+....++.+...||-..-|..-|+ .|-+++.
T Consensus 11 ~~~klq~~E~rN~~L------------e~~v~~le~~Le~s~~~q--~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 11 TQQKVQDLETRNAEL------------EHQLRAMERSLEEARAER--ERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp TTHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 356777777777776 777776666543332221 1233455666666666665555555 3444443
No 309
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.73 E-value=65 Score=25.71 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~ 398 (423)
+..+||++.+.+...+..|++.|+ +|.+.-.
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445677777777777777777776 5666433
No 310
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.53 E-value=48 Score=28.00 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=52.4
Q ss_pred CccEEEEEecCCC-CCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCC-hhhHHHHHhhhC--CCcCC
Q 014500 64 RSTCIFVVAVPNY-LSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVD-QLTADEFYSNLN--GKRFS 133 (423)
Q Consensus 64 ~~~~lcilaVP~~-ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~-q~~AdeF~~~~n--g~~Fn 133 (423)
.+.+|.|-++|.. .|-.||..++..+ ..|..+.+++++. ...++|.+ ...|.++....| |..++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~-G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNH-GEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSS-CCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhc-CCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 5678999999999 9999999999865 4689998888552 59999999 789999998875 44444
No 311
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=56.09 E-value=26 Score=33.06 Aligned_cols=64 Identities=8% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCccEEEEEecCCCC---------CHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcC
Q 014500 63 SRSTCIFVVAVPNYL---------SSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRF 132 (423)
Q Consensus 63 ~~~~~lcilaVP~~m---------s~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~F 132 (423)
..++.|.|=.+|..+ +-.+|...++.| -.|..++|++. +-.+-+.|.+.++|..=....||+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-G~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-GDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-SCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc-CCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 357889999999887 577777777655 47889999973 44789999999999999999999999
No 312
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=56.04 E-value=8 Score=29.70 Aligned_cols=25 Identities=36% Similarity=0.919 Sum_probs=19.9
Q ss_pred CCCCcCCCCCCCce--eeecccCccccc
Q 014500 217 ERPTCSVCGTVENL--WVCLICGFVGCG 242 (423)
Q Consensus 217 ~~~~C~~C~~~~~l--WiCL~CG~vgCg 242 (423)
...+|..|.....+ ..| .||..+|+
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCG 40 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEecc
Confidence 45789999877544 789 79999997
No 313
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=55.82 E-value=25 Score=28.28 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 374 QDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
.+|+..++.+.+|+..|++.|+-|.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777776666554
No 314
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.09 E-value=61 Score=24.69 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPE---TVEKAV---ASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~---~~~k~~---~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
|++-|..=|.-||++..+-.++++.-... ++...+ ...++..+..+..++..++.|. +|.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777889999988877776532211 112221 2345555556666666666665 554
No 315
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=54.79 E-value=41 Score=33.37 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=60.2
Q ss_pred ccEEEE--EecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCCCcC--ce
Q 014500 65 STCIFV--VAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPAEAE--VC 140 (423)
Q Consensus 65 ~~~lci--laVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsle~e--~C 140 (423)
+..|.| ++.+..+|-.||.+.++++- .|..+++.+ +|--.-+.|.+.++|++-.+..||+.+-..... +=
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G-~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTS-CEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcC-CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 455777 56788999999999988773 566676654 344788899999999999999999988322222 22
Q ss_pred EEEEEEEEEEeec
Q 014500 141 HMLFMLSVEYTEL 153 (423)
Q Consensus 141 ~v~~v~~v~~~~~ 153 (423)
++.|+.++.....
T Consensus 92 y~~~~~~~~~~~~ 104 (345)
T 3tht_A 92 YLNFVEKVQWKEL 104 (345)
T ss_dssp EEEECSSEEEEEE
T ss_pred EEEEeeccccccc
Confidence 5567766665553
No 316
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.37 E-value=95 Score=25.95 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~l 393 (423)
.--+|+.+++.+++|+.|||.+
T Consensus 84 ~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3356899999999999999854
No 317
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=53.56 E-value=1e+02 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQR 343 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr 343 (423)
..+.+.+|-.||..| -|.|.||
T Consensus 7 V~s~l~~LEaeyq~L--~~kE~qr 28 (119)
T 2avr_X 7 LVGELQALDAEYQNL--ANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHH
Confidence 467889999999999 5777777
No 318
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.67 E-value=9.6 Score=30.05 Aligned_cols=25 Identities=28% Similarity=0.765 Sum_probs=19.9
Q ss_pred CCCCcCCCCCCCce--eeecccCccccc
Q 014500 217 ERPTCSVCGTVENL--WVCLICGFVGCG 242 (423)
Q Consensus 217 ~~~~C~~C~~~~~l--WiCL~CG~vgCg 242 (423)
...+|..|.....+ ..| .||..+|+
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs 50 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCG 50 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECT
T ss_pred cCccchhhcCcccccceEe-ccCCEecc
Confidence 45689999877554 789 79999997
No 319
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.12 E-value=14 Score=32.93 Aligned_cols=44 Identities=20% Similarity=0.426 Sum_probs=27.9
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc------ccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~------~~~CPvCR~~~ 213 (423)
+...|.+|... + .-+.--.|...||..|+.... ...||.|+...
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34679999843 1 123334688999999986532 24577777643
No 320
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.53 E-value=94 Score=24.76 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcc
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLTTH 399 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~~ 399 (423)
..|+......+.-| +..+++++++...--.+. + .+...-..|.++..+++.|.+.-. .|+..|-|
T Consensus 12 E~KIq~avdtI~lL------------qmEieELKekN~~L~~e~-~-e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 12 EAKVQQAIDTITLL------------QMEIEELKEKNNSLSQEV-Q-NAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-H-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666655555 445555555433211111 1 122333456667777777777666 67777777
Q ss_pred CCcE
Q 014500 400 FRSV 403 (423)
Q Consensus 400 ~~~~ 403 (423)
-++|
T Consensus 78 ~e~v 81 (81)
T 2jee_A 78 MEEV 81 (81)
T ss_dssp HCC-
T ss_pred hhcC
Confidence 6553
No 321
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=49.91 E-value=43 Score=27.59 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 336 ATQLETQRQYYESLLAEAK 354 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~ 354 (423)
..|+|.+|.|||++=+.+.
T Consensus 54 i~~~ee~R~~yE~LQDkL~ 72 (98)
T 3f1i_H 54 LNQLDERRLYYEGLQDKLA 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3689999999998765554
No 322
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.89 E-value=15 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.+...||+|....+++..=|.=-.|..-||..|+.-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 456789999988765321111125567788888743
No 323
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.47 E-value=44 Score=27.49 Aligned_cols=47 Identities=11% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 347 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 347 E~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
....+...++.+.+|++. ++.+ .++++++.+...++.+-.+|. +|+.
T Consensus 42 c~~Vd~t~~eL~~EI~~L-~~eI-~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARL-SKEI-DQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555666666666666655 3333 567777777777777766666 6654
No 324
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=49.28 E-value=24 Score=29.31 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=48.4
Q ss_pred ccEEEEEecCCC--C---CHHHHHHHhcccccceeEEEEeecCCC-----CCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNY--L---SSDEFVRFCGSHIDHVEELIFIRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~--m---s~~d~l~F~~~~~~~I~~iriir~~~~-----p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.+|++..+-.- + .-.|+...++. .-.|.+++|+++... +.+--+-++|.+.++|..-....||+.|+.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567777776321 1 12444455543 347999999985321 123569999999999999999999999975
Q ss_pred C
Q 014500 135 A 135 (423)
Q Consensus 135 l 135 (423)
-
T Consensus 99 R 99 (118)
T 3ue2_A 99 R 99 (118)
T ss_dssp E
T ss_pred c
Confidence 3
No 325
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.98 E-value=11 Score=34.47 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhccc------ccCcccccccc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFCH 213 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~------~~~CPvCR~~~ 213 (423)
+...|.+|...= .-+.--.|...||..|+.... ...||.|+...
T Consensus 6 ~~~~C~~C~~~g----~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG----DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE----EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 346699997431 112334578899999986543 24577776543
No 326
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=48.40 E-value=1.5e+02 Score=29.73 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFR 401 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~ 401 (423)
+|...+..||+.| ...++.=+. |+..+++++.-.+-.-.+++.+.+...++.++.++++++++.+.|==-..- .-..
T Consensus 29 ~~~~~~~ke~~~l-~~~v~~~~~-~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~-~D~~ 105 (354)
T 3d5a_X 29 GRYQSLSRRYAEM-GEVIGLIRE-YRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKELERHLLPKDP-MDER 105 (354)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-CCCC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cccc
Confidence 5566677777766 222222111 223333333221110033434445556666777666666654432100000 1235
Q ss_pred cEEEEEeccccce
Q 014500 402 SVILFFFGGVGGC 414 (423)
Q Consensus 402 ~~~~~~~~~~~~~ 414 (423)
.+||-+-+|.||-
T Consensus 106 n~ileI~aGaGG~ 118 (354)
T 3d5a_X 106 DAIVEIRAGTGGE 118 (354)
T ss_dssp CEEEEEEECSSHH
T ss_pred ceEEEEEcCCCcH
Confidence 6899999999984
No 327
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.95 E-value=16 Score=29.07 Aligned_cols=7 Identities=29% Similarity=0.359 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014500 347 ESLLAEA 353 (423)
Q Consensus 347 E~~l~~~ 353 (423)
|..|.++
T Consensus 16 e~~l~e~ 22 (86)
T 1x8y_A 16 EAKLRDL 22 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 328
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.51 E-value=30 Score=28.81 Aligned_cols=63 Identities=16% Similarity=0.381 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccCCCCCccee-e--cCCCccchhhhhccc----ccCcccccccccCCCCCCcCCCCCCCceeeeccc
Q 014500 164 FTELPTCPICLERLDPDTSGILS-T--ICDHSFQCSCTAKWT----VLSCQVCRFCHQQDERPTCSVCGTVENLWVCLIC 236 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t-~--~C~H~Fh~~Cl~kW~----~~~CPvCR~~~~~~~~~~C~~C~~~~~lWiCL~C 236 (423)
..+.-.|.+|.+. + .++. - .|...||..|+..=. ...||.| .|..|+...+ ..|..|
T Consensus 12 ~~~~~~C~~C~~~---G--~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c----------~C~~C~k~~~-~~C~~C 75 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G--ELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWH----------QCDECSSAAV-SFCEFC 75 (107)
T ss_dssp CSSCSSCTTTCCC---S--EEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGG----------BCTTTCSBCC-EECSSS
T ss_pred CCCCCCCCcCCCC---C--cEeEECCCCCCcccccccCcCCcCCCCCEECCCC----------CCCcCCCCCC-cCcCCC
Confidence 3566789999832 1 1221 1 466889999986211 2357766 3566776544 778888
Q ss_pred Cccccc
Q 014500 237 GFVGCG 242 (423)
Q Consensus 237 G~vgCg 242 (423)
....|.
T Consensus 76 p~sfC~ 81 (107)
T 4gne_A 76 PHSFCK 81 (107)
T ss_dssp SCEECT
T ss_pred Ccchhh
Confidence 888884
No 329
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=47.42 E-value=1.3e+02 Score=25.47 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhcc
Q 014500 343 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA---DVNPLTTH 399 (423)
Q Consensus 343 r~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~---~ln~~L~~ 399 (423)
..=+|++..+++.+-++++++. .+.--.++|++.......+++++.+. -+|+.|..
T Consensus 52 ~K~HE~kklqLkse~e~E~ae~-k~KYD~~lqe~ese~~~kkK~le~~~~kV~mNk~LAe 110 (115)
T 3vem_A 52 KKTFEEKKSILKAELERKMAEV-QAEFRRKFHEVEAEHNTRTTKIEKDKNLVIMNKLLAN 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776665 44445678888888888888888776 37887764
No 330
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.40 E-value=77 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 014500 340 ETQRQYYESLLAEAKSKRESLI 361 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~~~i 361 (423)
.+|+.-.|..|.+++...+.++
T Consensus 58 ~~~~~sLE~~l~e~e~~~~~~l 79 (131)
T 3tnu_A 58 LSMKASLENSLEETKGRYCMQL 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776544433
No 331
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.01 E-value=40 Score=26.80 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 014500 374 QDIQNELDICEEAKKAVADVNPLT 397 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~~ln~~L 397 (423)
.+|+..++.+.+|+..|++=|..|
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444443
No 332
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=46.53 E-value=15 Score=29.74 Aligned_cols=26 Identities=27% Similarity=0.643 Sum_probs=19.5
Q ss_pred CCCCcCCCCCCCc---eeeecccCcccccC
Q 014500 217 ERPTCSVCGTVEN---LWVCLICGFVGCGR 243 (423)
Q Consensus 217 ~~~~C~~C~~~~~---lWiCL~CG~vgCgR 243 (423)
...+|..|..... ...| .||..+|++
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEeccc
Confidence 3467888887654 4689 599999973
No 333
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=46.06 E-value=25 Score=28.81 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEA 353 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~ 353 (423)
|=+|+.|.|||-.+.+-
T Consensus 14 sVie~ErIY~e~v~~~~ 30 (95)
T 3n7n_E 14 AKLDSERIYNEYVQSQY 30 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 44899999999998443
No 334
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.64 E-value=97 Score=32.12 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 361 IPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
|++.+...+.+.++.|+.+++++.+.++.|+ .++..
T Consensus 158 i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 158 IKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344343455666777777777777777776 45433
No 335
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.54 E-value=95 Score=31.44 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
.++-||..|++...+||.|+ +|.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777776 553
No 336
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=45.16 E-value=30 Score=32.11 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014500 375 DIQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 375 ~lq~kl~~~~~E~~~l~~ln~ 395 (423)
+|+..++.+.+|+..|++.|+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 337
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=44.88 E-value=80 Score=25.39 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=52.4
Q ss_pred ccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.-|.|=.++..+|-.+|...+..+ -.|.+++++. +|-...++|.+.+.|+.=.+..||..+..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~-G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH-GPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH-SCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh-CCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 5678899999999999999877533 2566677766 24589999999999999999999988764
No 338
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.68 E-value=1.2e+02 Score=24.11 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAKS 355 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~~ 355 (423)
.+|+.|....+.-+++++.
T Consensus 25 ~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 25 QTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3455666666666666654
No 339
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.82 E-value=97 Score=35.30 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 374 QDIQNELDICEEAKKAVA 391 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~ 391 (423)
++|+.++..+++|++.|+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777777777776
No 340
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.08 E-value=48 Score=33.43 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~ 391 (423)
++..+.+.++.++|++.++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLK 455 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhh
Confidence 3334444444444444444
No 341
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.39 E-value=1.2e+02 Score=30.95 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 370 ASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
..+++.++++..+.++|++.|. ++|++
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555555555555544443 34433
No 342
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.29 E-value=12 Score=34.08 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=21.4
Q ss_pred CCcccccccCCCCCcceee---cCCCccchhhhh
Q 014500 169 TCPICLERLDPDTSGILST---ICDHSFQCSCTA 199 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~---~C~H~Fh~~Cl~ 199 (423)
.||||....+++..+...+ .|..-||..|+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 5999999887753222233 567889988873
No 343
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=41.43 E-value=39 Score=33.37 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 335 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 335 L~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
++.+||+|.+|.+..++.. +.+. .+.+..++++|..|+.+++.+...+.
T Consensus 7 ~~~~le~~~~~ik~~~~~~-------~~~~-I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIEST-------VAGS-LRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTT-------THHH-HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh-------hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888777422 2222 22333444555555555555554444
No 344
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.42 E-value=53 Score=21.40 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKA 389 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~ 389 (423)
.+..-.|+||.++|++++-.|+
T Consensus 10 ~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455678899999998877664
No 345
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=41.16 E-value=56 Score=29.05 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHhcccccceeEEEEeecCCC-----CCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 81 EFVRFCGSHIDHVEELIFIRNDAM-----EDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 81 d~l~F~~~~~~~I~~iriir~~~~-----p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
|+...++. ...|.+++|+++... ..+--+.++|.+.++|..=....||+.|+.-
T Consensus 145 dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 145 EVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp HHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred HHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 33344432 348999999975432 3355799999999999999999999999854
No 346
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=40.66 E-value=81 Score=26.78 Aligned_cols=101 Identities=8% Similarity=-0.021 Sum_probs=54.6
Q ss_pred ceeeecCccccc-cc-CCCCceeeeeeEEEEccCCCCCc--CC-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeE
Q 014500 21 GFCTVSSTATRS-RA-NPNPKFSERRGLVHLFRGTSQSY--QQ-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEE 95 (423)
Q Consensus 21 ~~~~~~~~~~~~-f~-sgnp~v~~~~G~vhl~r~~~~~~--~~-~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~ 95 (423)
+.-.|...+-+= |. ..+.-.+-+.|.|||.++..... .- ...+...+++=..|...|.+.. ...+-..
T Consensus 21 E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~-------~~~s~~~ 93 (134)
T 1rrp_B 21 EEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTP-------NAGSDRS 93 (134)
T ss_dssp EEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSSCCCBC-------STTCTTE
T ss_pred eEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCCceEee-------cCCCCeE
Confidence 355555555552 43 34567889999999998653221 10 0011223444334445554431 1111123
Q ss_pred EEEeecC---CCCCceEEEEEeCChhhHHHHHhhhC
Q 014500 96 LIFIRND---AMEDRYSVLIKLVDQLTADEFYSNLN 128 (423)
Q Consensus 96 iriir~~---~~p~~ymvLikF~~q~~AdeF~~~~n 128 (423)
++..-.| +.+..-..+|+|.+.+.|++|...|+
T Consensus 94 ~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~ 129 (134)
T 1rrp_B 94 FVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFE 129 (134)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 3333221 22334578999999999999999775
No 347
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.04 E-value=1.8e+02 Score=25.01 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
+..++.+++.+++.+.+++..|. +++
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554 444
No 348
>3fd9_A Uncharacterized protein; anti-activator, transcription regulation, repressor, type III secretion, unknown function; 2.60A {Pseudomonas aeruginosa ucbpp-pa14}
Probab=38.95 E-value=65 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 014500 334 LLATQLETQRQYYESLLAEAKSKRESLIPETV 365 (423)
Q Consensus 334 lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~ 365 (423)
.+..||+.|..||.. +++++-..++++...+
T Consensus 131 ~~~nQL~~qk~fW~~-~~~~~~~~~s~~~~~l 161 (256)
T 3fd9_A 131 TQSRQLRIKSEFWSR-VAELEPEQAREELARV 161 (256)
T ss_dssp HHHHHHHHHHHHHHH-HHTTSSGGGTTHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhcCchhhhHHHHHH
Confidence 567899999999964 5555555555555554
No 349
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.73 E-value=86 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
+.+..+-..|..++..++.|++.|++|
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888888888888754
No 350
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.70 E-value=2.2e+02 Score=29.57 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 341 TQRQYYESLLAEAKSKRESL---IPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 341 ~Qr~yyE~~l~~~~~~~~~~---i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
.|+.=.+..+.++-++.++. |++-+...+ +.+.-||..|++...+||.|+ +|-..+
T Consensus 100 ~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 100 EGAQQLDENYGHVSTELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555554444433 334444455 788899999999999999998 665444
No 351
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.40 E-value=1.3e+02 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014500 340 ETQRQYYESLLAEAKSKRES 359 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~~~~~ 359 (423)
.+|+.-.|..|.+++...+.
T Consensus 56 ~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 56 KKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 45566667766666654433
No 352
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.35 E-value=28 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=21.0
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.+...|.||.+.- .-+.--.|...||..|+..
T Consensus 7 ~~~~~C~vC~~~g----~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 7 HHMEFCRVCKDGG----ELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SSCSSCTTTCCCS----SCBCCSSSCCCBCSSSSSS
T ss_pred CCCCcCCCCCCCC----CEEEcCCCCHHHcccccCC
Confidence 4567799998531 1123345788999999864
No 353
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=38.22 E-value=55 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 014500 339 LETQRQYYESLLAEAKSKRESL 360 (423)
Q Consensus 339 Le~Qr~yyE~~l~~~~~~~~~~ 360 (423)
|.+|+...|..|.+++...+.+
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~ 27 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVE 27 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766654433
No 354
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.81 E-value=1.6e+02 Score=23.65 Aligned_cols=31 Identities=6% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L~ 398 (423)
.+..++.+|..+++++.++.+.++ +|.+.+.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666666666666666 5666554
No 355
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=37.44 E-value=1.8e+02 Score=27.22 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 330 EYNRLLATQLET-QRQYYESLLAEAKSKRESLIP--ETVEKAVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 330 EY~~lL~sQLe~-Qr~yyE~~l~~~~~~~~~~i~--~~~~k~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
|.-.-|.++||. =+.|+.++|..++++.+..++ .+..|.-..++..-..-++|+..|...+
T Consensus 82 ~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~ 145 (222)
T 3ok8_A 82 DTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRM 145 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 444456777776 578889999999987764433 3334544455555555566666665555
No 356
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.16 E-value=22 Score=28.98 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 338 QLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 338 QLe~Qr~yyE~~l~~~~~~ 356 (423)
+++.|..-|...|..++++
T Consensus 34 ~~~~e~~~~q~~i~~lE~e 52 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKERE 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666554
No 357
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=37.00 E-value=21 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.6
Q ss_pred CceEEEEEeCChhhHHHHHhh
Q 014500 106 DRYSVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 106 ~~ymvLikF~~q~~AdeF~~~ 126 (423)
..-+|+|+|+|.+.|.+||+.
T Consensus 52 ~~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHHS
T ss_pred CCeEEEEECCCHHHHHHHHCC
Confidence 466999999999999999873
No 358
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.97 E-value=1.2e+02 Score=24.57 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=44.0
Q ss_pred cEEEEEecC-----CCCC---HHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 66 TCIFVVAVP-----NYLS---SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 66 ~~lcilaVP-----~~ms---~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+|.|-.+| +++. +.+|++-++.+- .|..+||+++. ..+.|++.++|..=-+ .||..++.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 455555566 3444 366777666554 78999999943 6899999999998887 99988764
No 359
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=36.51 E-value=2.2e+02 Score=25.08 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 322 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS----KRES------LIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 322 ~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~----~~~~------~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.|++-+..||...+...+|.=|.-.+-..+++++ +.+. -+.+.+...+...++.|+..|.--.+|.+.
T Consensus 96 ~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~-- 173 (185)
T 3r2p_A 96 AKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQ-- 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--
Confidence 4566677777777777777666443333333333 2221 133444555556666666555444333321
Q ss_pred HHhhhhccC
Q 014500 392 DVNPLTTHF 400 (423)
Q Consensus 392 ~ln~~L~~~ 400 (423)
+|++.|...
T Consensus 174 kl~~~leeL 182 (185)
T 3r2p_A 174 RLAARLEAL 182 (185)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 455555443
No 360
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.78 E-value=2.4e+02 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
.+.....+|+.++..++||+..+. |||=-|
T Consensus 115 k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eL 145 (168)
T 3o0z_A 115 KVEGERKEAQDMLNHSEKEKNNLEIDLNYKL 145 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566778888888888888777 655433
No 361
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.50 E-value=14 Score=27.97 Aligned_cols=37 Identities=24% Similarity=0.614 Sum_probs=23.2
Q ss_pred CCCCCCcccccc-cCCCCCcceeecCCCccchhhhhccc
Q 014500 165 TELPTCPICLER-LDPDTSGILSTICDHSFQCSCTAKWT 202 (423)
Q Consensus 165 ~ElptCpICLE~-ld~~~~gi~t~~C~H~Fh~~Cl~kW~ 202 (423)
.+.++|+||.-. |.++ .|-.-.-|.-.|+..|-.+|.
T Consensus 7 ~d~~~C~iC~KTKFADG-~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG-CGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp SCCCCCSSSSCSCCCSS-CCEEBTTTCCEECTTSEEEEE
T ss_pred CCcchhhhhccceeccC-CCccccccCCeeecccCCEee
Confidence 467899999874 4442 344444566666666665554
No 362
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.21 E-value=2.6e+02 Score=25.47 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
.+.+.+.+.++++|++.+.+...+|. +|.+
T Consensus 125 ~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 125 KRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999987 5543
No 363
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.19 E-value=13 Score=30.65 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=20.9
Q ss_pred CCCCcccccccCCCCCcceee-cCCCccchhhhh
Q 014500 167 LPTCPICLERLDPDTSGILST-ICDHSFQCSCTA 199 (423)
Q Consensus 167 lptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~ 199 (423)
.-.|++|....+++..-+.=- .|..-||..|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 346999999986542211111 456778888873
No 364
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.38 E-value=74 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLA--TQLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~--sQLe~Qr~yyE~~l~~~~~~ 356 (423)
...|+.++..|...++. .+||..|.||=++|..++.-
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36788889988888765 47999999999999988763
No 365
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=33.89 E-value=49 Score=27.00 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-
Q 014500 320 FNSKVEAIVDEYNRLLAT--QLETQRQ-YYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDIC----EEAKKAVA- 391 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~s--QLe~Qr~-yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~----~~E~~~l~- 391 (423)
.++=+|+|..||..+.+. ....|+. =||.+|..- |+|. ..+..++-.|.....|+ ++|+..|+
T Consensus 12 l~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Q-------i~Em--q~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~ 82 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQ-------LAEM--QQIRNTVYERELTHRKMKDAYEEEIKHLKL 82 (92)
T ss_dssp -----CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567778888766432 3355664 677765432 2222 12233333333333332 56788887
Q ss_pred HHhh
Q 014500 392 DVNP 395 (423)
Q Consensus 392 ~ln~ 395 (423)
+|+.
T Consensus 83 eLe~ 86 (92)
T 3vp9_A 83 GLEQ 86 (92)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 6653
No 366
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=33.31 E-value=39 Score=21.77 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014500 333 RLLATQLETQRQYYESL 349 (423)
Q Consensus 333 ~lL~sQLe~Qr~yyE~~ 349 (423)
.||..-+|+||+-|++.
T Consensus 9 ~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888999999999864
No 367
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.30 E-value=26 Score=25.27 Aligned_cols=33 Identities=12% Similarity=0.393 Sum_probs=22.1
Q ss_pred CCCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 164 FTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 164 l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
..+...|.+|...- .-+.--.|...||..|+..
T Consensus 6 ~~~~~~C~vC~~~g----~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 6 SGHEDFCSVCRKSG----QLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp CSSCCSCSSSCCSS----CCEECSSSSCEECSSSSSS
T ss_pred CCCCCCCccCCCCC----eEEEcCCCCcceECccCCC
Confidence 34567899998741 1133346788899999864
No 368
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=33.28 E-value=93 Score=31.36 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccCCcEEEEEeccccce
Q 014500 370 ASKMQDIQNELDICEEAKKAVADVNPLT-----THFRSVILFFFGGVGGC 414 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l~~ln~~L-----~~~~~~~~~~~~~~~~~ 414 (423)
...++.++.++++++.+ |...| .-...+||-+-+|.||-
T Consensus 93 ~~e~~~l~~~l~~le~~------l~~lLlp~~~~D~~naileI~aGaGG~ 136 (371)
T 1zbt_A 93 KEELKNSKVAKEEYEEK------LRFLLLPKDPNDDKNIILEIRGAAGGD 136 (371)
T ss_dssp HHHHHHHHHHHHHHHHH------HHTTTSCCCTTTTSCEEEEEEECTTTH
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcCCCCCCcccceEEEEEcCCCcH
Confidence 33445555555544444 44445 22467999999999995
No 369
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.19 E-value=44 Score=22.45 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~ 391 (423)
|++.+..|++++..++..|.
T Consensus 2 RMnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHH
Confidence 34445555555555554444
No 370
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=32.75 E-value=1.3e+02 Score=23.69 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=36.0
Q ss_pred hhhHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014500 321 NSKVEA-IVDE-YNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNPLTT 398 (423)
Q Consensus 321 ~~K~e~-i~~E-Y~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~ 398 (423)
.+|+|. |-.| |..| -+.| .|| |.+|..+-++..+.|-|. -..++.++.++...+..+...++.+..+|.
T Consensus 8 Ek~ID~aIE~edyE~L-~~LL-~kR---EkLlk~L~~e~l~~i~Ek----Dk~R~~~Ik~~~~~L~q~a~~~rna~sslq 78 (79)
T 2fzt_A 8 ERKIDEAIEKEDYETL-LSLL-NKR---KELMEGLPKDKLSEILEK----DRKRLEIIEKRKTALFQEINVIREARSSLQ 78 (79)
T ss_dssp HHHHHHHHHHTCHHHH-HHHH-HHH---HHHHTTSCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH-HHHH-HHH---HHHHhhCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566654 4333 4444 3334 344 344444434433444333 234566677777767667777776666654
No 371
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.74 E-value=1.9e+02 Score=23.05 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLL--ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL--~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
..|.|.+.+|-++|= -+.||++|.-||.+|..-+ ..+..||+.|.....|+.-|.
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK----------------~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATK----------------AEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHhhHHHHHHHH
Confidence 467788888888872 3566777777776654433 455677777777777777665
No 372
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=32.20 E-value=1.2e+02 Score=25.60 Aligned_cols=87 Identities=7% Similarity=0.013 Sum_probs=48.3
Q ss_pred CCCceeeeeeEEEEccCCCCCcC--C-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeec---CCCCCceE
Q 014500 36 PNPKFSERRGLVHLFRGTSQSYQ--Q-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRN---DAMEDRYS 109 (423)
Q Consensus 36 gnp~v~~~~G~vhl~r~~~~~~~--~-~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~---~~~p~~ym 109 (423)
.+.-.|-+.|.|||.++...... - ...+.-.+++=..|...|.+.. ...+-..++.... ++.+..-.
T Consensus 24 ~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~-------~~~s~~~~~~~~~d~~d~~~~~~~ 96 (130)
T 1xke_A 24 VSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKP-------LSGSDRAWMWLASDFSDGDAKLEQ 96 (130)
T ss_dssp TTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEE-------CTTCSSCEEEEEEECSSSCSEEEE
T ss_pred CCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEee-------cCCCCeEEEEEecccCCCCCceEE
Confidence 35688889999999987533211 0 0001224444445555665431 1011112222211 22223446
Q ss_pred EEEEeCChhhHHHHHhhhCC
Q 014500 110 VLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 110 vLikF~~q~~AdeF~~~~ng 129 (423)
.+|+|.+.+.|++|+..+.-
T Consensus 97 ~~irfks~e~a~~f~~~~ee 116 (130)
T 1xke_A 97 LAAKFKTPELAEEFKQKFEE 116 (130)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 89999999999999997753
No 373
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=31.60 E-value=37 Score=27.38 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=17.4
Q ss_pred ceEEEEEeCChhhHHHHHh
Q 014500 107 RYSVLIKLVDQLTADEFYS 125 (423)
Q Consensus 107 ~ymvLikF~~q~~AdeF~~ 125 (423)
..+|+++|+|.++|.+||+
T Consensus 54 ~~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 54 ARNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp SEEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHc
Confidence 4699999999999999987
No 374
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.50 E-value=31 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.504 Sum_probs=23.3
Q ss_pred CCCCCCcccccccCCCCCcc-eeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGI-LSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi-~t~~C~H~Fh~~Cl~k 200 (423)
.+...|.||....+.+...+ .=-.|+..||..|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 45678999997643321112 2246788999999854
No 375
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.45 E-value=31 Score=27.47 Aligned_cols=38 Identities=16% Similarity=0.508 Sum_probs=23.3
Q ss_pred CCCCCCCCCcccccccCCCCCc-ceeecCCCccchhhhh
Q 014500 162 AGFTELPTCPICLERLDPDTSG-ILSTICDHSFQCSCTA 199 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~~~g-i~t~~C~H~Fh~~Cl~ 199 (423)
+...+...|.||...-..+... +.--.|+-.||..|+.
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 3445678999998764211111 2223567789999974
No 376
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.39 E-value=50 Score=22.03 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~ 391 (423)
+..|..|.+.+..++..|.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 3444555555555555444
No 377
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.33 E-value=55 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccc
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~ 211 (423)
+....+.|+.|-+.+... . ...-+..||..|. .|-.|+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~---~-~~a~~~~~H~~CF------~C~~C~~ 49 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV---F-VKLRDRHRHPECY------VCTDCGT 49 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS---C-EECSSCEECTTTT------SCSSSCC
T ss_pred CCCCCCccccCCCCccCc---E-EEECcceeCcCcC------eeCCCCC
Confidence 456789999999988752 3 3345778888775 4555554
No 378
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.98 E-value=31 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=18.9
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.|.+|.+.-+++..-+.--.|...||..|+..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 57777764222112223345788999999854
No 379
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.91 E-value=36 Score=25.09 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=21.1
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.+...|.+|...- .-+.--.|...||..|+..
T Consensus 9 ~~~~~C~vC~~~g----~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 9 DHQDYCEVCQQGG----EIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCCSSCTTTSCCS----SEEECSSSSCEEEHHHHCT
T ss_pred CCCCCCccCCCCC----cEEECCCCChhhhhhccCC
Confidence 3456899998631 1122346778999999865
No 380
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.53 E-value=1.9e+02 Score=22.45 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
...|+.++-.+...| |+++..++...+..-.+. .+....++.+...||-..-|+.-|+ .|-++
T Consensus 5 ~~~kLq~~E~~N~~L------------e~~v~~le~~Le~s~~~q--~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDL------------EGQLSEMEQRLEKSQSEQ--DAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 357777777777777 888887777554333222 1233455666666666655555554 34433
No 381
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.50 E-value=2.3e+02 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014500 368 AVASKMQDIQNELDICEEAKKAVADVNP 395 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~~ln~ 395 (423)
.+..+++.++.++.+..+-+..|+.|..
T Consensus 19 ~l~~~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 19 LIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555666666666666666665554
No 382
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.38 E-value=1.8e+02 Score=21.99 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=4.4
Q ss_pred HHHHHHH
Q 014500 328 VDEYNRL 334 (423)
Q Consensus 328 ~~EY~~l 334 (423)
..||.++
T Consensus 12 ~qeylev 18 (63)
T 2w6a_A 12 LQEYLEL 18 (63)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3567766
No 383
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.23 E-value=96 Score=31.40 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 014500 336 ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDIC 383 (423)
Q Consensus 336 ~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~ 383 (423)
++.||.|..|-+.++..--. ..+.+..- .+....|+|+|+.++|-|
T Consensus 115 s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~-l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQ-RINLLQKN-VRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45677777777777655443 22333333 233346777777777654
No 384
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.98 E-value=54 Score=21.98 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~ 391 (423)
+..|..|.+.+..+++.|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4444555555555544444
No 385
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.73 E-value=40 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.+...|.||.+.- .-+.--.|...||..|+..
T Consensus 6 ~~~~~C~vC~~~g----~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 6 KNEDECAVCRDGG----ELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp SCCCSBSSSSCCS----SCEECSSCCCEECTTTSSS
T ss_pred CCCCCCccCCCCC----CEEEcCCCChhhcccccCC
Confidence 4567899998641 1133346788999999863
No 386
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.65 E-value=51 Score=25.06 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccc
Q 014500 158 STPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRF 211 (423)
Q Consensus 158 ~~~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~ 211 (423)
...+......+.|+.|-+.+.... .+. .-+..||..|. .|..|+.
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~~--~v~-a~~~~wH~~CF------~C~~C~~ 50 (80)
T 2dj7_A 6 SGKPIKIRGPSHCAGCKEEIKHGQ--SLL-ALDKQWHVSCF------KCQTCSV 50 (80)
T ss_dssp CCCCCCCSSCSCCTTTCCCCSSSC--CEE-ETTEEECTTTC------BCSSSCC
T ss_pred CCCCcCCCCCCCCcCcCCeeCCCe--EEE-ECCcccccccC------CcCcCCC
Confidence 345555677899999999986431 232 34677887774 4666654
No 387
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.43 E-value=55 Score=22.24 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~l 393 (423)
|...|-.+...++.|...|++|
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 388
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=29.37 E-value=27 Score=26.34 Aligned_cols=35 Identities=29% Similarity=0.641 Sum_probs=22.2
Q ss_pred CCCCCCcccccccCCCCCcceee-cCCCccchhhhh
Q 014500 165 TELPTCPICLERLDPDTSGILST-ICDHSFQCSCTA 199 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~-~C~H~Fh~~Cl~ 199 (423)
.+...|++|....+++..-|.=- .|+.-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45668999999987653222222 566779998873
No 389
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.27 E-value=2.9e+02 Score=29.13 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHH--------H---------HHHHHHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESL---IPETV--------E---------KAVASKMQDIQNELDI 382 (423)
Q Consensus 323 K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~---i~~~~--------~---------k~~~~k~~~lq~kl~~ 382 (423)
+|..+.++.+.=|++-++.=|..||++ .+..+++... +.+++ + ..+..+++.|+.+++.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777888888888888877 5444443321 11111 0 1334566666666666
Q ss_pred HHHHHHHHH-HHhhhhc
Q 014500 383 CEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 383 ~~~E~~~l~-~ln~~L~ 398 (423)
...-++.|+ -|.+.+.
T Consensus 129 QlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 129 KVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666665 4444433
No 390
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=29.05 E-value=2.4e+02 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=46.2
Q ss_pred ccEEEEEecCCCCCHHHHHHHhccc------ccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHh
Q 014500 65 STCIFVVAVPNYLSSDEFVRFCGSH------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYS 125 (423)
Q Consensus 65 ~~~lcilaVP~~ms~~d~l~F~~~~------~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~ 125 (423)
-.++..+-|+.- ..+|...+... .+.-....+.|....|++|+++..++|.++-+++..
T Consensus 24 i~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~p~~yv~~~~W~s~ea~~a~~~ 88 (128)
T 3kg0_A 24 VTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERDKDNSYVNIAVWTDHDAFRRALA 88 (128)
T ss_dssp EEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTCSSEEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCCCCEEEEEEEECCHHHHHHHHc
Confidence 355667778887 88898765432 457788889987666899999999999998888875
No 391
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.56 E-value=2.3e+02 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~ 391 (423)
.+..|+.+++.+..|+..|.
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 392
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.27 E-value=38 Score=26.64 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=18.5
Q ss_pred CCCcCCCCCCCc--eeeecccCccccc
Q 014500 218 RPTCSVCGTVEN--LWVCLICGFVGCG 242 (423)
Q Consensus 218 ~~~C~~C~~~~~--lWiCL~CG~vgCg 242 (423)
..+|..|...-. ...|- ||..+|+
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs 50 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCG 50 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECS
T ss_pred CCcChhhCCcccccCeecC-CCCEech
Confidence 457888887633 36788 9999997
No 393
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.21 E-value=74 Score=26.04 Aligned_cols=21 Identities=0% Similarity=0.078 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 370 ASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 370 ~~k~~~lq~kl~~~~~E~~~l 390 (423)
..++...-++|+++..|...+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~ 81 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKY 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444
No 394
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.06 E-value=1.5e+02 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
-.++.+.+|.|++|+..++...|+|+
T Consensus 22 laaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667788888888888777777664
No 395
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=21 Score=28.24 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=28.6
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhcccccCcccccccccCCCCCCcCCCCCC--CceeeecccCc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWTVLSCQVCRFCHQQDERPTCSVCGTV--ENLWVCLICGF 238 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~~~~CPvCR~~~~~~~~~~C~~C~~~--~~lWiCL~CG~ 238 (423)
...-.|..|.+.|.- +.. ....|+.|+.- .|..|... ...|.|-+|-.
T Consensus 23 ~~~r~CarC~~~LG~----l~~---------------~g~~C~~Ck~r-------VC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 23 YSDRTCARCQESLGR----LSP---------------KTNTCRGCNHL-------VCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp CCCCBCSSSCCBCSS----SCT---------------TTSEETTTTEE-------CCTTSEEECSTTCEEEHHHHS
T ss_pred CCccchhhhCccccc----ccc---------------CCCcCcccChh-------hcccccccCCCCCEEEeeCch
Confidence 456788888888753 111 02346666542 36666532 36899988854
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=27.92 E-value=1.3e+02 Score=25.55 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=43.6
Q ss_pred CCccEEEEEecCCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 63 SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 63 ~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
.+...|.|.+.|...+..-+-+| ..+- .|.+.+. ..+ .--+-|+|.+...|..=.. .||+.++.
T Consensus 22 ~~~~wVtVFGFp~~~~~~VL~~F-~~~G-~Iv~~~~--~~~---~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASASYILLQF-AQYG-NILKHVM--SNT---GNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGGGEEEEECCCGGGHHHHHHHH-HTTS-CEEEEEE--CSS---SSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-HhhC-cEEEecc--CCC---CCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 45789999999999755444444 3332 4444443 222 2378999999999887666 49999973
No 397
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.85 E-value=53 Score=27.10 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCcccccccCCCCCcceeecCCCccchhhhhccc--ccCccccccc
Q 014500 159 TPPAGFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT--VLSCQVCRFC 212 (423)
Q Consensus 159 ~~~~~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~--~~~CPvCR~~ 212 (423)
.+++++..-..|-.|+-..+. ++. -.+|-++..|+..-. ...||.|.+.
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~----LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG----LVE-CNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS----EEE-CSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred cCCccccCcccChhhccccCC----eee-ecchhhHHHHHHHHHhhccCCcccCCc
Confidence 566777888899999988763 332 338999999998865 5689999975
No 398
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.77 E-value=63 Score=21.55 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014500 374 QDIQNELDICEEAKKAVA 391 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~ 391 (423)
..|..|.+.+..+++.|.
T Consensus 3 nQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHH
Confidence 344444444444444443
No 399
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=27.74 E-value=2.2e+02 Score=25.23 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCCc
Q 014500 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVN-PLTTHFRS 402 (423)
Q Consensus 324 ~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ln-~~L~~~~~ 402 (423)
++....++-.+ +..+.+++.....+|... ..........|+.++..+...++..-+-| .-|.....
T Consensus 18 ~~~alr~ia~l------------~r~~~~i~~~~n~eI~~i-k~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~K 84 (171)
T 2p2u_A 18 AEGALAEIATI------------DRKVGEIEAQMNEAIDAA-KARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRK 84 (171)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCe
Confidence 45555566666 666777777777777666 33445677888888888888888777666 55534333
Q ss_pred EEEEEecccc
Q 014500 403 VILFFFGGVG 412 (423)
Q Consensus 403 ~~~~~~~~~~ 412 (423)
-+-+-||-||
T Consensus 85 t~~l~~G~v~ 94 (171)
T 2p2u_A 85 SLDLGFGTIG 94 (171)
T ss_dssp CCBCSSCBCC
T ss_pred EEEeCCEEEE
Confidence 3445556554
No 400
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.65 E-value=39 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCCCCCCCcccccccCCCCCc-ceeecCCCccchhhhhc
Q 014500 163 GFTELPTCPICLERLDPDTSG-ILSTICDHSFQCSCTAK 200 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~g-i~t~~C~H~Fh~~Cl~k 200 (423)
...+...|.||.+.-..+... +.=-.|+-.||..|+..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 345678899998764111111 22236788999999853
No 401
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.64 E-value=64 Score=25.93 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=27.0
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhccc------ccCcccccc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRF 211 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~------~~~CPvCR~ 211 (423)
.+...|.+|...=+ -+.--.|.-.||..|+..=. +..||.|+.
T Consensus 23 ~n~~~C~vC~~~g~----LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSSC----CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCCC----EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 45678999996421 13334677889999985421 234666654
No 402
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.47 E-value=4e+02 Score=25.25 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQR 343 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr 343 (423)
..|++-+..|+...+..++|.=|
T Consensus 50 r~~L~Py~~el~~~~~~~~eelr 72 (273)
T 3s84_A 50 QQRLEPYADQLRTQVNTQAEQLR 72 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555555555555555443
No 403
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.43 E-value=50 Score=23.06 Aligned_cols=31 Identities=26% Similarity=0.631 Sum_probs=19.8
Q ss_pred CCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 169 TCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.|.||...-+.+ .-+.=-.|+..||..|+..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCC
Confidence 588888754322 1133346788999999853
No 404
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.25 E-value=1.3e+02 Score=38.43 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
+.+..|+++|+.++++..+|++.|+ +++..
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888887 55543
No 405
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.19 E-value=2e+02 Score=29.83 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
+...|..++..++++...++ +|+..
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443 34433
No 406
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.07 E-value=43 Score=36.80 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=47.7
Q ss_pred CCCcCCCCCC--CceeeecccCcccccCC---cchhhhhhhhcCCCc-eeee----CCCceEEEccCCc-cccc--cccc
Q 014500 218 RPTCSVCGTV--ENLWVCLICGFVGCGRY---KEGHAVRHWKDTQHW-YSLD----LRTQQIWDYVGDN-YVHR--LNQS 284 (423)
Q Consensus 218 ~~~C~~C~~~--~~lWiCL~CG~vgCgRy---~~~HA~~H~e~t~H~-lal~----l~t~rVwcY~cd~-yVHr--l~q~ 284 (423)
...|.-||.. ..+--|++|+.-+|--. ...|...|...++|- +.+. +++-.+=||.|.. -|-. .+.+
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 4567777766 34677888888777432 357999999888884 3433 3445677999975 2333 3688
Q ss_pred cccCCeeeecC
Q 014500 285 KADGKLVEMNS 295 (423)
Q Consensus 285 k~dgklvel~~ 295 (423)
|+++.+|-+..
T Consensus 91 ~~~~~~~~~cr 101 (802)
T 2xzl_A 91 KSEAVVVLLCR 101 (802)
T ss_dssp -----CEEEET
T ss_pred cCCceEEEEeC
Confidence 88888777765
No 407
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.80 E-value=11 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.545 Sum_probs=21.3
Q ss_pred ccCcccccccccCCCCCC-cCCCCCCCceeeecccC
Q 014500 203 VLSCQVCRFCHQQDERPT-CSVCGTVENLWVCLICG 237 (423)
Q Consensus 203 ~~~CPvCR~~~~~~~~~~-C~~C~~~~~lWiCL~CG 237 (423)
+..||.|.....|....+ |++|.....---|.+||
T Consensus 29 dGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg 64 (109)
T 2k0a_A 29 DGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICN 64 (109)
T ss_dssp TTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTS
T ss_pred CCcccccCCccCCcceEEECCcCCCCCcCCceEEcC
Confidence 567888876554443333 66666555555677776
No 408
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.61 E-value=17 Score=33.27 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=6.8
Q ss_pred ceeeecccCc
Q 014500 229 NLWVCLICGF 238 (423)
Q Consensus 229 ~lWiCL~CG~ 238 (423)
..|.|.+||.
T Consensus 185 ~p~~CP~C~~ 194 (202)
T 1yuz_A 185 DFEKCPICFR 194 (202)
T ss_dssp CCSBCTTTCC
T ss_pred CCCCCCCCCC
Confidence 4577777776
No 409
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.31 E-value=37 Score=25.72 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=21.4
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
.+...|++|...-+.. .-+.=-.|...||..|+..
T Consensus 16 ~~~~~C~~C~~~~~~~-~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSC-CEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCC-CEEEcCCCCcccccccCCC
Confidence 3445799998765421 1122235677899999854
No 410
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.29 E-value=33 Score=29.88 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=15.1
Q ss_pred CCCcCCCCCC-----CceeeecccCcc
Q 014500 218 RPTCSVCGTV-----ENLWVCLICGFV 239 (423)
Q Consensus 218 ~~~C~~C~~~-----~~lWiCL~CG~v 239 (423)
.+.|..|+.. .++|+|..|++.
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCCcceEecCCeEECCccccc
Confidence 3455555543 479999999985
No 411
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.28 E-value=18 Score=28.94 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=9.2
Q ss_pred CCCcccccccCC
Q 014500 168 PTCPICLERLDP 179 (423)
Q Consensus 168 ptCpICLE~ld~ 179 (423)
..||.|-..|..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 578888887765
No 412
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.28 E-value=69 Score=21.50 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~ 391 (423)
+..|..|.+.+..+++.|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 4445555555555555554
No 413
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=26.10 E-value=2.3e+02 Score=21.96 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQYY 346 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~yy 346 (423)
..++++.+..|+..|...--+.|..|.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~ 30 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYK 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998888554444444443
No 414
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.01 E-value=2.5e+02 Score=22.38 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
+..++..|..++..+..+++.|+ +++
T Consensus 76 l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 76 SKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665 444
No 415
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.85 E-value=1.8e+02 Score=20.58 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 014500 344 QYYESLLAEAKSK 356 (423)
Q Consensus 344 ~yyE~~l~~~~~~ 356 (423)
.|...+|+++++.
T Consensus 6 aylrkkiarlkkd 18 (52)
T 3he5_B 6 AYLRKKIARLKKD 18 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3556666666654
No 416
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=25.67 E-value=1.3e+02 Score=27.96 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014500 341 TQRQYYESLLAEAKS 355 (423)
Q Consensus 341 ~Qr~yyE~~l~~~~~ 355 (423)
.||++|+..+++..+
T Consensus 40 ~Q~~~Y~~~~~~~~~ 54 (271)
T 1z5z_A 40 EQAAMYKAEVENLFN 54 (271)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666655443
No 417
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=25.63 E-value=2.2e+02 Score=24.81 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhhccC
Q 014500 384 EEAKKAVADVNPLTTHF 400 (423)
Q Consensus 384 ~~E~~~l~~ln~~L~~~ 400 (423)
..+.+.|++|+.+|.+-
T Consensus 90 ~re~~~L~~i~~Al~ri 106 (151)
T 1tjl_A 90 DRERKLIKKIEKTLKKV 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566777777777653
No 418
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=25.61 E-value=30 Score=31.18 Aligned_cols=41 Identities=22% Similarity=0.599 Sum_probs=26.3
Q ss_pred CCCcccccccCCCCCcceeecCCCccchhhhhccc------ccCccccccc
Q 014500 168 PTCPICLERLDPDTSGILSTICDHSFQCSCTAKWT------VLSCQVCRFC 212 (423)
Q Consensus 168 ptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~kW~------~~~CPvCR~~ 212 (423)
..|.+|.+.=+ -+.--.|...||..|+..=. +..||.|+..
T Consensus 3 ~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS----CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCc----eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46889985421 13345678999999995311 3457777753
No 419
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.48 E-value=2.3e+02 Score=29.37 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 014500 371 SKMQDIQNELDICEEAKKAVA-DVNPLTT 398 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~-~ln~~L~ 398 (423)
.+...|..++..++++...++ +|+..|.
T Consensus 78 ~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 78 AEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554 4554443
No 420
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.44 E-value=1.6e+02 Score=20.63 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVADV 393 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~~l 393 (423)
|....+..+|..++.-+..|-+-|+++
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445566677777777777777777765
No 421
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.15 E-value=3.5e+02 Score=28.22 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 317 GALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 356 (423)
Q Consensus 317 ~~~~~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~ 356 (423)
+|-.+.|+.+++.|-.++-..--+.+ +=||..+++.+++
T Consensus 4 ~a~yq~~la~yq~elarvqkana~ak-a~Ye~~~ae~~a~ 42 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAK-AAYEAAVAANNAA 42 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 44567788777777766643333333 3468888877764
No 422
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=25.05 E-value=2.5e+02 Score=25.75 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=49.3
Q ss_pred CCCCceeeeeeEEEEccCCCCCc--CC-CCCCCccEEEEEecCCCCCHHHHHHHhcccccceeEEEE-e-e--cCCCCCc
Q 014500 35 NPNPKFSERRGLVHLFRGTSQSY--QQ-NPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIF-I-R--NDAMEDR 107 (423)
Q Consensus 35 sgnp~v~~~~G~vhl~r~~~~~~--~~-~~~~~~~~lcilaVP~~ms~~d~l~F~~~~~~~I~~iri-i-r--~~~~p~~ 107 (423)
.++...+-+.|.|||.++..... +. ...+.-.+++=..|...|.+.. ...+-..++. . . .++.+.-
T Consensus 63 ~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~-------~~~s~ks~v~~~~~d~ad~~~k~ 135 (201)
T 1k5d_B 63 DLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKP-------NAGSDRAWVWNTHADFADECPKP 135 (201)
T ss_dssp SSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCSSCCCCB-------CSSCSSEEEEEEEEECTTSSCEE
T ss_pred cCCCccccceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecCCceeee-------cCCCCceEEEEeccccCCCCCce
Confidence 45678899999999998753221 10 0011124455455556665431 1111112222 1 1 1222233
Q ss_pred eEEEEEeCChhhHHHHHhhhCC
Q 014500 108 YSVLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 108 ymvLikF~~q~~AdeF~~~~ng 129 (423)
-..+|+|.+.+.|++|+..|+-
T Consensus 136 e~~~iRfks~e~A~~f~~~~ee 157 (201)
T 1k5d_B 136 ELLAIRFLNAENAQKFKTKFEE 157 (201)
T ss_dssp EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHHHHH
Confidence 4689999999999999998754
No 423
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.73 E-value=48 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 367 KAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 367 k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
++|..|++.|+.++|++.++...+.
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999998887765
No 424
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.30 E-value=47 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCCCCCCcccccccCCCCCcceeecCCCccchhhhh
Q 014500 163 GFTELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (423)
Q Consensus 163 ~l~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~ 199 (423)
...+...|.||...-+.+ .-+.=-.|...||..|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSS
T ss_pred hccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCC
Confidence 345667899999865432 112223577889988874
No 425
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.30 E-value=2.6e+02 Score=22.03 Aligned_cols=36 Identities=6% Similarity=0.080 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014500 366 EKAVASKMQDIQNELDICEEAKKAVADVNPLTTHFR 401 (423)
Q Consensus 366 ~k~~~~k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~ 401 (423)
++....-+..|...-+.+..=-+.|++||..|...+
T Consensus 40 ~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Ae 75 (83)
T 1l4a_C 40 KEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAE 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666655666777777665443
No 426
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.21 E-value=2.3e+02 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 014500 375 DIQNELDICEEAKKAVADVNPLT 397 (423)
Q Consensus 375 ~lq~kl~~~~~E~~~l~~ln~~L 397 (423)
.+.++|..+.++++.|..-|.+|
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhh
Confidence 34444444444444444444444
No 427
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=24.15 E-value=1.1e+02 Score=24.72 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=39.2
Q ss_pred EEecCCCCCHHHHHHHhccc-----ccceeEEEEeecCC--CCCceEEEEEeCChhhHHHHHhh
Q 014500 70 VVAVPNYLSSDEFVRFCGSH-----IDHVEELIFIRNDA--MEDRYSVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 70 ilaVP~~ms~~d~l~F~~~~-----~~~I~~iriir~~~--~p~~ymvLikF~~q~~AdeF~~~ 126 (423)
.+-|+.- .-.+|...+... .+....+.++|... .|++|+++..++|.++-+.|...
T Consensus 13 ~~~V~~g-~~~~fe~~~~~~~~l~~~pGFi~~~llr~~~~~~~~~y~~~~~W~s~eaf~aw~~S 75 (114)
T 1tz0_A 13 TFTVKEG-TSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETS 75 (114)
T ss_dssp EEEECTT-CHHHHHHHTCSCCSGGGBTTEEEEEEEECCCSSSSEEEEEEEEESCHHHHHHHHTC
T ss_pred EEEECCC-cHHHHHHHHhccchhhcCCCeeEEEEEEcCCCCCCcEEEEEEEECCHHHHHHHHcC
Confidence 3344443 246777755432 34556788888665 57899999999999998888764
No 428
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.89 E-value=2.7e+02 Score=21.96 Aligned_cols=21 Identities=5% Similarity=0.291 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 337 TQLETQRQYYESLLAEAKSKR 357 (423)
Q Consensus 337 sQLe~Qr~yyE~~l~~~~~~~ 357 (423)
+||++|+..-..+|.+++.+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN 22 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRN 22 (79)
T ss_dssp --------CTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 578888888888887777653
No 429
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.60 E-value=39 Score=24.83 Aligned_cols=19 Identities=37% Similarity=0.829 Sum_probs=15.0
Q ss_pred CCCCCCCCCcccccccCCC
Q 014500 162 AGFTELPTCPICLERLDPD 180 (423)
Q Consensus 162 ~~l~ElptCpICLE~ld~~ 180 (423)
..+-+...||+|...+..+
T Consensus 5 ~~lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEER 23 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEE
T ss_pred HHHHhheeCCCCCCcceec
Confidence 4567888999999987653
No 430
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=23.41 E-value=1.7e+02 Score=24.02 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-------HHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 014500 319 LFNSKVEAIVDEYNRLLATQLE--------TQRQYYESLLAEAKS-------KRESLIPETVEKAVASKMQDIQNELDIC 383 (423)
Q Consensus 319 ~~~~K~e~i~~EY~~lL~sQLe--------~Qr~yyE~~l~~~~~-------~~~~~i~~~~~k~~~~k~~~lq~kl~~~ 383 (423)
..-+|+++|+.|...| ..|.+ .+-.|++++|.+.-= +-...|..+ .|++-.+.|++..+||..
T Consensus 15 ~pi~kI~~I~~ev~~L-~~~V~~f~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~-RK~~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 15 PSISRLQEIQREVKAI-EPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQA-RKRAAQETERLLKELEQN 92 (99)
T ss_dssp TTHHHHHHHHHHHHHS-HHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 3468888888887643 44432 255566666654332 112234444 455556666666666653
No 431
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=23.29 E-value=4.8e+02 Score=27.75 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 324 VEAIVDEYNRLLATQLETQRQYYESLLAEAK 354 (423)
Q Consensus 324 ~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~ 354 (423)
+..++.++.+-+..+++.+..-|+..+.+--
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (695)
T 2j69_A 605 LPQVAHEQSQVVYNAVKECFDSYEREVSKRI 635 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666677888888888886665433
No 432
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.14 E-value=1.2e+02 Score=21.94 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 014500 374 QDIQNELDICE 384 (423)
Q Consensus 374 ~~lq~kl~~~~ 384 (423)
++||+.+|+++
T Consensus 15 ~KLek~ID~LE 25 (52)
T 2z5i_A 15 ARLKKLVDDLE 25 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 433
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.09 E-value=1.4e+02 Score=25.42 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 014500 380 LDICEEAKKAVA 391 (423)
Q Consensus 380 l~~~~~E~~~l~ 391 (423)
++++.+|+..|+
T Consensus 45 ~~~l~k~I~~lk 56 (123)
T 2lf0_A 45 KATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 434
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.07 E-value=5.5e+02 Score=25.31 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 014500 379 ELDICEEAKKAV 390 (423)
Q Consensus 379 kl~~~~~E~~~l 390 (423)
|+..++.|+..|
T Consensus 444 ~~~~~~~~~~~~ 455 (471)
T 3mq9_A 444 KVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 435
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.89 E-value=5.1e+02 Score=25.60 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~ 391 (423)
|.+.++.++.++..+++.++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 436
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=22.69 E-value=4e+02 Score=26.63 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.3
Q ss_pred CcEEEEEeccccce
Q 014500 401 RSVILFFFGGVGGC 414 (423)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (423)
..+||-+-+|.||-
T Consensus 126 ~naileI~aGaGG~ 139 (365)
T 1gqe_A 126 ADCYLDIQAGSGGT 139 (365)
T ss_dssp SCEEEEEEECSSHH
T ss_pred cceEEEEEcCCCcH
Confidence 57999999999995
No 437
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.68 E-value=44 Score=24.33 Aligned_cols=31 Identities=13% Similarity=0.508 Sum_probs=20.7
Q ss_pred CCCCCcccccccCCCCCcceeecCCCccchhhhhc
Q 014500 166 ELPTCPICLERLDPDTSGILSTICDHSFQCSCTAK 200 (423)
Q Consensus 166 ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~k 200 (423)
....|.+|... . .-+.--.|...||..|+..
T Consensus 4 ~~~~C~vC~~~-g---~ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKS-G---QLLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCC-S---SCEECSSSSCEECGGGSSS
T ss_pred CCCCCcCCCCC-C---cEEEcCCCCcCEECCcCCC
Confidence 45679999874 1 1133346788999999864
No 438
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=22.57 E-value=26 Score=30.69 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCCCCcccccccCCCCCcceeecCCCccchhhhh
Q 014500 165 TELPTCPICLERLDPDTSGILSTICDHSFQCSCTA 199 (423)
Q Consensus 165 ~ElptCpICLE~ld~~~~gi~t~~C~H~Fh~~Cl~ 199 (423)
.+...| +|....+++..=+.=-.|...||..|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 456678 9988765431111122567788998884
No 439
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.54 E-value=2.7e+02 Score=21.44 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
.+|+.++..|.......--+. +..+.+.+.... +. +.--.++..|++.++..+++..+.....
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~-----e~~l~~~e~~~~-~~-E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQA-----EADKKAAEERSK-QL-EDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777776662221111 222222222111 11 1113466778888888888887766544
No 440
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.51 E-value=4.4e+02 Score=23.95 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHH
Q 014500 323 KVEAIVDEYNRL 334 (423)
Q Consensus 323 K~e~i~~EY~~l 334 (423)
+++.+..||+..
T Consensus 25 ~~~~le~El~EF 36 (189)
T 2v71_A 25 SFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 441
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=22.48 E-value=1.2e+02 Score=23.26 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHhccc------ccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhh
Q 014500 79 SDEFVRFCGSH------IDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSN 126 (423)
Q Consensus 79 ~~d~l~F~~~~------~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~ 126 (423)
..+|...+... .+.-....+.|+...|++|+++.+|+|.++.+.|...
T Consensus 15 ~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~~~~~~~~~~~~W~s~~a~~a~~~s 68 (106)
T 1iuj_A 15 AEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTES 68 (106)
T ss_dssp HHHHHHHHHHHGGGGTTSTTEEEEEEEEESSTTSCEEEEEEESCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEecCCCCCeEEEEEEECCHHHHHHHhcC
Confidence 35566554322 4566778888866568999999999999999888654
No 442
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.39 E-value=75 Score=21.33 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014500 372 KMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~ 391 (423)
+++.|..|.+++..++..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLA 21 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHH
Confidence 34445555555555555444
No 443
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.39 E-value=3e+02 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014500 371 SKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 371 ~k~~~lq~kl~~~~~E~~~l~ 391 (423)
..++.++..+++.++-++.|+
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555544444443
No 444
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=22.09 E-value=4.2e+02 Score=24.88 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 014500 343 RQYYESLLAEAKSKRE 358 (423)
Q Consensus 343 r~yyE~~l~~~~~~~~ 358 (423)
+.+++++|..++++.+
T Consensus 98 ~~~~~~li~pL~~kie 113 (253)
T 2ykt_A 98 KSFHNELLTQLEQKVE 113 (253)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355666666665443
No 445
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=21.98 E-value=3.5e+02 Score=22.76 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014500 372 KMQDIQNELDICEEAKKAVADVNPLTTH 399 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~ln~~L~~ 399 (423)
.+..+-+++....++.+.+.+.|..|.+
T Consensus 89 ~l~~~w~~l~~l~~~c~~~N~~Ng~Li~ 116 (154)
T 3opc_A 89 ELGPLWQALQANAAQAREHNQRNGTLIA 116 (154)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777766643
No 446
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=21.85 E-value=53 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=17.8
Q ss_pred CCcccccccCCCCCcceee----cCCCccchhhhh
Q 014500 169 TCPICLERLDPDTSGILST----ICDHSFQCSCTA 199 (423)
Q Consensus 169 tCpICLE~ld~~~~gi~t~----~C~H~Fh~~Cl~ 199 (423)
.|.+|....+++ ...+ .|..-||..|+.
T Consensus 4 ~cc~C~~p~~~~---~~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDK---VDWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTT---CCEEECTTTTCCEEETTTTT
T ss_pred cCCCCcCccCCC---CcEEEeCCCCCccCcccccC
Confidence 578887777543 2233 355578888874
No 447
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.82 E-value=1.2e+02 Score=19.69 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HH
Q 014500 374 QDIQNELDICEEAKKAVA-DV 393 (423)
Q Consensus 374 ~~lq~kl~~~~~E~~~l~-~l 393 (423)
..|.+++..+++|+.+|+ +|
T Consensus 5 aalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777776 54
No 448
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=3.3e+02 Score=22.09 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=47.7
Q ss_pred CccEEEEEecCCCCCHHHHH----HHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCCC
Q 014500 64 RSTCIFVVAVPNYLSSDEFV----RFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSPA 135 (423)
Q Consensus 64 ~~~~lcilaVP~~ms~~d~l----~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fnsl 135 (423)
..++|.|-.+|-..+..++. +.++.+--.|..+ +.| -.-+.|.++++|..=.++.||..|..-
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG-----~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGC-----SAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTT-----CEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecC-----EEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34558899999999998855 5555553356665 122 478999999999999999999998643
No 449
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=21.34 E-value=3.2e+02 Score=22.68 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 014500 330 EYNRLLATQLETQRQYYESLLAEAKSKRESLIPET 364 (423)
Q Consensus 330 EY~~lL~sQLe~Qr~yyE~~l~~~~~~~~~~i~~~ 364 (423)
|=..-|..|||.=|+-=+.+|.+++.++.+-+.++
T Consensus 13 erE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eA 47 (105)
T 3v6i_B 13 EKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEA 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899999988999999988877766665
No 450
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.32 E-value=3.8e+02 Score=22.75 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q 014500 330 EYNRLLATQLET 341 (423)
Q Consensus 330 EY~~lL~sQLe~ 341 (423)
.-++||..||-.
T Consensus 25 N~T~lLq~qLTq 36 (121)
T 3mq7_A 25 NVTHLLQQELTE 36 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 356777777743
No 451
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.32 E-value=1.4e+02 Score=24.30 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=43.6
Q ss_pred ccEEEEEecCC------CCC---HHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCCCcCCC
Q 014500 65 STCIFVVAVPN------YLS---SDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNGKRFSP 134 (423)
Q Consensus 65 ~~~lcilaVP~------~ms---~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng~~Fns 134 (423)
+.+|.|-.+|+ ++. +.++++-++.+- .|..+||+.+. ..+.|++.++|..=-+ .||..++.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 35566665563 444 355666665544 68889999942 8899999999988777 99988874
No 452
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.31 E-value=1.3e+02 Score=21.77 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVN 394 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln 394 (423)
++...+++|++|++.+.++.+-|+ +|+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777666 444
No 453
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.20 E-value=2.3e+02 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 014500 369 VASKMQDIQNELDICEEAKKAVA-DVNPLT 397 (423)
Q Consensus 369 ~~~k~~~lq~kl~~~~~E~~~l~-~ln~~L 397 (423)
+..+...|..++..++++...++ +|+..|
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555555 555444
No 454
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.08 E-value=97 Score=23.70 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhh
Q 014500 372 KMQDIQNELDICEEAKKAVA-DVNP 395 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~-~ln~ 395 (423)
|--+|+.++||+.+|.+.++ +|+.
T Consensus 33 KWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 33 KWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77889999999999998887 5553
No 455
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=21.03 E-value=72 Score=31.80 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCcEEEEEeccccce
Q 014500 372 KMQDIQNELDICEEAKKAVADVNPLTTHFRSVILFFFGGVGGC 414 (423)
Q Consensus 372 k~~~lq~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~~~~~ 414 (423)
.++.++.++++++++.+.|= . -.....+||-+-+|.||-
T Consensus 61 e~~~l~~~l~~le~~l~~lL--~--p~D~~~aileI~aGaGG~ 99 (342)
T 1rq0_A 61 EIEKYEKELDQLYQELLFLL--S--PEASDKAIVEIRPGTGGE 99 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--S--CSSCSEEEEEEEECSSTH
T ss_pred HHHHHHHHHHHHHHHHHHhc--C--ccccCCeEEEEEcCCCcH
Confidence 34555666666655544321 0 012678999999999994
No 456
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.01 E-value=83 Score=21.13 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014500 373 MQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 373 ~~~lq~kl~~~~~E~~~l~ 391 (423)
+..|..|++.+..+++.|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 3444444444444444443
No 457
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=20.94 E-value=56 Score=28.29 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=18.0
Q ss_pred CceEEEEEeCChhhHHHHHh
Q 014500 106 DRYSVLIKLVDQLTADEFYS 125 (423)
Q Consensus 106 ~~ymvLikF~~q~~AdeF~~ 125 (423)
..-+|||+|+|.++|.+||.
T Consensus 87 ~~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 87 WDHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp CSEEEEEEESCHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHc
Confidence 35699999999999999987
No 458
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.89 E-value=1.1e+02 Score=31.70 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA-DVNPL 396 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~-~ln~~ 396 (423)
...+.++.|+..++++.+.++.|+ .|+..
T Consensus 160 ~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 160 NIPTNLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566777777777777777776 55543
No 459
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=20.68 E-value=4.4e+02 Score=24.27 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHH
Q 014500 320 FNSKVEAIVDEYNRLLATQLETQRQ----YYESLLAEAKSKRE------SLIPETVEKAVASKMQDIQNELD 381 (423)
Q Consensus 320 ~~~K~e~i~~EY~~lL~sQLe~Qr~----yyE~~l~~~~~~~~------~~i~~~~~k~~~~k~~~lq~kl~ 381 (423)
.+.|++-+..||...+...+|.=|. |.+++-.++..+.+ .-+.+++...+...++.++.++.
T Consensus 93 ~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~ 164 (243)
T 2a01_A 93 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLA 164 (243)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998885 44444444443322 12445556666666666666664
No 460
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.67 E-value=1.3e+02 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 363 ETVEKAVASKMQDIQNELDICEEA 386 (423)
Q Consensus 363 ~~~~k~~~~k~~~lq~kl~~~~~E 386 (423)
++..+....+.+++..++++.+++
T Consensus 110 ~~~~~~l~~~~~~l~~~l~~le~~ 133 (139)
T 3eff_K 110 KAAEEAYTRTTRALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555666666655444
No 461
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.67 E-value=1.5e+02 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
.++.+++.|-.|.+.+..+++.|+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555
No 462
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.64 E-value=2.4e+02 Score=21.57 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 340 ETQRQYYESLLAEAKS-KRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA 391 (423)
Q Consensus 340 e~Qr~yyE~~l~~~~~-~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~ 391 (423)
++||.|=|-+-..+++ +..-.-.+.....+....+.|...+..+..|...|+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 463
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=2.5e+02 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHhcccccceeEEEEeecCCCCCceEEEEEeCChhhHHHHHhhhCC
Q 014500 74 PNYLSSDEFVRFCGSHIDHVEELIFIRNDAMEDRYSVLIKLVDQLTADEFYSNLNG 129 (423)
Q Consensus 74 P~~ms~~d~l~F~~~~~~~I~~iriir~~~~p~~ymvLikF~~q~~AdeF~~~~ng 129 (423)
+..+|-.||..+++.+- .|..++|++. .+-...+.|.+.++|+.-....++
T Consensus 26 ~~~~te~~L~~~F~~~G-~V~~v~i~~~----~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYG-EVLNLVLSSK----KPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CCSCCHHHHHHHHHTTS-CEEEEEEESS----SSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCCHHHHHHHHHhcC-CEEEEEEccC----CCCEEEEEECCHHHHHHHHHhcCC
Confidence 45678899998887664 5888888852 344789999999999988877444
No 464
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.60 E-value=1e+02 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhccCCcEEEEEecc
Q 014500 368 AVASKMQDI---QNELDICEEAKKAVADVNPLTTHFRSVILFFFGG 410 (423)
Q Consensus 368 ~~~~k~~~l---q~kl~~~~~E~~~l~~ln~~L~~~~~~~~~~~~~ 410 (423)
.+.++.+.| +.++..+++-++.|+.++. .+.-+++-+|+
T Consensus 27 ~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~----~~~~ilvplg~ 68 (151)
T 2zdi_C 27 ILAQNLELLNLAKAEVQTVRETLENLKKIEE----EKPEILVPIGA 68 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----SSCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCceEEEEcCC
Confidence 334455555 7777766666666655543 33445566665
No 465
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.46 E-value=2.1e+02 Score=19.55 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014500 368 AVASKMQDIQNELDICEEAKKAV 390 (423)
Q Consensus 368 ~~~~k~~~lq~kl~~~~~E~~~l 390 (423)
.+...+.+++.||..+++||-.|
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999998754
No 466
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.46 E-value=1.3e+02 Score=28.66 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 321 NSKVEAIVDEYNRLLATQLETQ----R--QYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVAD 392 (423)
Q Consensus 321 ~~K~e~i~~EY~~lL~sQLe~Q----r--~yyE~~l~~~~~~~~~~i~~~~~k~~~~k~~~lq~kl~~~~~E~~~l~~ 392 (423)
...++.+..|.. +|..||++. | .- |..+.+++++... +.+. .+.+...++.+++++.++++|++.|++
T Consensus 23 ~~~~~~~~~e~~-~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~-L~ar-Ne~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 23 AAELEQLRREAA-VLREQLENAVGSHAPTRS-ARDIHQLEARIDS-LAAR-NSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp ------------------------------C-CHHHHHHHHHHHH-HTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-HHHHhhhhcccCcccchh-hhHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555666766 566666322 1 11 3344444333211 1111 123445667777777777777777764
No 467
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.12 E-value=3.8e+02 Score=23.92 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 014500 361 IPETVEKAVASKMQDIQNELDICE 384 (423)
Q Consensus 361 i~~~~~k~~~~k~~~lq~kl~~~~ 384 (423)
..++..+++..++.+|++++....
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556666666555433
No 468
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.12 E-value=51 Score=27.85 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.2
Q ss_pred ceEEEEEeCChhhHHHHHhhhC
Q 014500 107 RYSVLIKLVDQLTADEFYSNLN 128 (423)
Q Consensus 107 ~ymvLikF~~q~~AdeF~~~~n 128 (423)
--..+|+|.+.+.|++|+..++
T Consensus 99 ~~~~~lrfk~~e~a~~f~~~~~ 120 (125)
T 2ec1_A 99 PVTMLIRVKTSEDADELHKILL 120 (125)
T ss_dssp CEEEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHHHHHH
Confidence 3478999999999999999775
No 469
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.12 E-value=73 Score=21.62 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014500 384 EEAKKAVA 391 (423)
Q Consensus 384 ~~E~~~l~ 391 (423)
+.|...|+
T Consensus 21 e~EV~RL~ 28 (36)
T 1kd8_A 21 ENEVARLE 28 (36)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!