BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014501
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 188 LEEFGIRLLTYDLPGFGESDPHPSRN---LESSALDMSFFASSVGVNDKFWVLGYSSGGL 244
L + G R+L D+ G+GES P +E +M F +G++ ++ G+ GG+
Sbjct: 281 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 339
Query: 245 HAWAALKYIPDRL-AGAAMFAPMV--NP 269
W + P+R+ A A++ P + NP
Sbjct: 340 LVWYMALFYPERVRAVASLNTPFIPANP 367
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 188 LEEFGIRLLTYDLPGFGESDPHPSRN---LESSALDMSFFASSVGVNDKFWVLGYSSGGL 244
L + G R+L D+ G+GES P +E +M F +G++ ++ G+ GG+
Sbjct: 62 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 120
Query: 245 HAWAALKYIPDRLAGAAMFAPMVNPYDSMMTKGE 278
W + P+R+ A P + M+ E
Sbjct: 121 LVWYMALFYPERVRAVASLNTPFIPANPNMSPLE 154
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 188 LEEFGIRLLTYDLPGFGESDPHPSRN---LESSALDMSFFASSVGVNDKFWVLGYSSGGL 244
L + G R+L D+ G+GES P +E +M F +G++ ++ G+ GG+
Sbjct: 77 LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFI-GHDWGGM 135
Query: 245 HAWAALKYIPDRLAGAAMFAPMVNPYDSMMTKGE 278
W + P+R+ A P + M+ E
Sbjct: 136 LVWYMALFYPERVRAVASLNTPFIPANPNMSPLE 169
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 199 DLPGFGESDP-HPSRNLESSALDMSFFASSVGVNDKFWVLGYSSGGLHAWAALKYIPDRL 257
DLPG G SDP PS + + +G +F + G+S GG A A ++ D+
Sbjct: 56 DLPGXGNSDPISPSTSDNVLETLIEAIEEIIGAR-RFILYGHSYGGYLAQAIAFHLKDQT 114
Query: 258 AGAAMFAPMVNPYDSMMTKGEMYGIWEK 285
G + P++ S G+ I E+
Sbjct: 115 LGVFLTCPVITADHSKRLTGKHINILEE 142
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 199 DLPGFGESDP-HPSRNLESSALDMSFFASSVGVNDKFWVLGYSSGGLHAWAALKYIPDRL 257
DLPG G SDP PS + + +G +F + G+S GG A A ++ D+
Sbjct: 56 DLPGXGNSDPISPSTSDNVLETLIEAIEEIIGAR-RFILYGHSYGGYLAQAIAFHLKDQT 114
Query: 258 AGAAMFAPMVNPYDSMMTKGEMYGIWEK 285
G + P++ S G+ I E+
Sbjct: 115 LGVFLTCPVITADHSKRLTGKHINILEE 142
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 188 LEEFGIRLLTYDLPGFGESDPHPSRN---LESSALDMSFFASSVGVNDKFWVLGYSSGGL 244
L + G R+L D+ G+G+S P +E +M F +G+ ++ G+ G+
Sbjct: 279 LAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFI-GHDWAGV 337
Query: 245 HAWAALKYIPDRL-AGAAMFAPMVNP 269
W + P+R+ A A++ P + P
Sbjct: 338 MVWNMALFYPERVRAVASLNTPFMPP 363
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 184 KASLLEEFGIRLLTYDLPGFGE-SDPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSSG 242
+++ L + G R++TYD GFG+ S P + ++ A D++ ++ + D V G+S G
Sbjct: 43 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAVLV-GFSMG 101
Query: 243 -GLHAWAALKYIPDRLAGAAMFAPM 266
G A Y R+A A A +
Sbjct: 102 TGEVARYVSSYGTARIAAVAFLASL 126
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 184 KASLLEEFGIRLLTYDLPGFGE-SDPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSSG 242
+++ L + G R++TYD GFG+ S P + ++ A D++ ++ + D V G+S+G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAVLV-GFSTG 100
Query: 243 -GLHAWAALKYIPDRLAGAAMFAPM 266
G A Y R+A A A +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL 125
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 184 KASLLEEFGIRLLTYDLPGFGE-SDPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSSG 242
+++ L + G R++TYD GFG+ S P + ++ A D++ ++ + D V G+S G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAVLV-GFSMG 100
Query: 243 -GLHAWAALKYIPDRLAGAAMFAPM 266
G A Y R+A A A +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL 125
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 184 KASLLEEFGIRLLTYDLPGFGE-SDPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSSG 242
+++ L + G R++TYD GFG+ S P + ++ A D++ ++ + D V G+S G
Sbjct: 42 QSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVLETLDLQDAVLV-GFSMG 100
Query: 243 -GLHAWAALKYIPDRLAGAAMFAPM 266
G A Y R+A A A +
Sbjct: 101 TGEVARYVSSYGTARIAKVAFLASL 125
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 188 LEEFGIRLLTYDLPGFGESDPHPSRNLESSALDMSFFASSVGVND--KFWVLGYSSGGLH 245
L E G R++ D PG+G+SD + S L+ S V D K +LG S GG
Sbjct: 62 LVEAGYRVILLDCPGWGKSDSVVNSG-SRSDLNARILKSVVDQLDIAKIHLLGNSMGGHS 120
Query: 246 AWAALKYIPDRL----------AGAAMFAPMVNPYDSMMTKGEMY 280
+ A P+R+ G ++F PM P + + ++Y
Sbjct: 121 SVAFTLKWPERVGKLVLMGGGTGGMSLFTPM--PTEGIKRLNQLY 163
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 333 RALIEDPIYEEFWQRDVEESVRQGNAKPF 361
R +E+ IYEEF +R VE + R+ PF
Sbjct: 306 RIFVEESIYEEFVKRSVERAKRRIVGSPF 334
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 238 GYSSGGLHAWAALKYIPDRLAGAAMFAPMVNPYDSM------MTKGEMYGIWEKWTRKRK 291
G S+GGL A L PD A P V+ +M +T GE WE+W +
Sbjct: 595 GRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGE----WEEWGNPNE 650
Query: 292 FMYF 295
+ Y+
Sbjct: 651 YKYY 654
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 187 LLEEFGIRLLTYDLPGFGES-----DPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSS 241
LLE G ++ DL G + + H R+ +++ +S+ ++K +LG+S
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV---MASIPPDEKVVLLGHSF 88
Query: 242 GGLHAWAALKYIPDRLAGAA-MFAPMVNPYDSMMTKGEMYG 281
GG+ A++ P++++ A M A M +P S+ E Y
Sbjct: 89 GGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYN 129
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 187 LLEEFGIRLLTYDLPGFGES-----DPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSS 241
LLE G ++ DL G + + H R+ +++ +S+ ++K +LG+S
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV---MASIPPDEKVVLLGHSF 88
Query: 242 GGLHAWAALKYIPDRLAGAA-MFAPMVNPYDSMMTKGEMYG 281
GG+ A++ P++++ A M A M +P S+ E Y
Sbjct: 89 GGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYN 129
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 187 LLEEFGIRLLTYDLPGFGES-----DPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSS 241
LLE G ++ DL G + + H R+ +++ +S+ ++K +LG+S
Sbjct: 26 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV---MASIPPDEKVVLLGHSF 82
Query: 242 GGLHAWAALKYIPDRLAGAA-MFAPMVNPYDSMMTKGEMYG 281
GG+ A++ P++++ A M A M +P S+ E Y
Sbjct: 83 GGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYN 123
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 187 LLEEFGIRLLTYDLPGFGES-----DPHPSRNLESSALDMSFFASSVGVNDKFWVLGYSS 241
LLE G ++ DL G + + H R+ +++ +S+ ++K +LG+S
Sbjct: 32 LLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPLMEV---MASIPPDEKVVLLGHSF 88
Query: 242 GGLHAWAALKYIPDRLAGAA-MFAPMVNPYDSMMTKGEMYG 281
GG+ A++ P++++ A M A M +P S+ E Y
Sbjct: 89 GGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYN 129
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 9 SARFVNSAAWSNGHHGSETESFGYQVREFVKGVMEMSVEFAKGCRDIVRQSLGKEDSFM 67
S RF A GH S+ GY+ ++ + + A+G +V SLG +S
Sbjct: 92 SDRFTTIAVDQRGHGLSDKPETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVT 150
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 182 GLKASLLEEFG---IRLLTYDLPGFGESDPHPSRNLESSA 218
GLK L +EFG +L + FGES+P PS+ +ES A
Sbjct: 59 GLK-ELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFA 97
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 195 LLTYDLPGFGESDPHPSRN------LESSALDMSFFASSVGVNDKFWVLGYSSGGLHAWA 248
++ DL GFG+S+ P N L+ +A D + ++G+ +K +V+G+ +
Sbjct: 58 VIVPDLRGFGDSE-KPDLNDLSKYSLDKAADDQAALLDALGI-EKAYVVGHDFAAIVLHK 115
Query: 249 ALKYIPDRLAGAAMFAPM 266
++ DR+ AA+F P+
Sbjct: 116 FIRKYSDRVIKAAIFDPI 133
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 182 GLKASLLEEFG---IRLLTYDLPGFGESDPHPSRNLESSA 218
GLK L +EFG +L + FGES+P PS+ +ES A
Sbjct: 68 GLK-ELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFA 106
>pdb|1Z52|A Chain A, Proaerolysin Mutant W373l
pdb|1Z52|B Chain B, Proaerolysin Mutant W373l
Length = 470
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 270 YDSMM--TKGEMYGIWEKWTRKRKFMYFLARRFPRSLVYFYRQTFLSGKHGKIDKWLSLS 327
YD+ +K YG+ EK T K KF + L S+ Q++ S G LS S
Sbjct: 221 YDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQS 280
Query: 328 LGKRDRALIEDPIYEEFWQRDV 349
+ A + P+ E ++ D+
Sbjct: 281 VRPTVPARSKIPVKIELYKADI 302
>pdb|3G4O|A Chain A, Crystal Structure Of The Activated Aerolysin Mutant H132n
pdb|3G4O|B Chain B, Crystal Structure Of The Activated Aerolysin Mutant H132n
Length = 470
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 270 YDSMM--TKGEMYGIWEKWTRKRKFMYFLARRFPRSLVYFYRQTFLSGKHGKIDKWLSLS 327
YD+ +K YG+ EK T K KF + L S+ Q++ S G LS S
Sbjct: 221 YDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQS 280
Query: 328 LGKRDRALIEDPIYEEFWQRDV 349
+ A + P+ E ++ D+
Sbjct: 281 VRPTVPARSKIPVKIELYKADI 302
>pdb|1PRE|A Chain A, Proaerolysin
pdb|1PRE|B Chain B, Proaerolysin
Length = 470
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 270 YDSMM--TKGEMYGIWEKWTRKRKFMYFLARRFPRSLVYFYRQTFLSGKHGKIDKWLSLS 327
YD+ +K YG+ EK T K KF + L S+ Q++ S G LS S
Sbjct: 221 YDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQS 280
Query: 328 LGKRDRALIEDPIYEEFWQRDV 349
+ A + P+ E ++ D+
Sbjct: 281 VRPTVPARSKIPVKIELYKADI 302
>pdb|3G4N|A Chain A, Crystal Structure Of The Activated Aerolysin Mutant H132d
pdb|3G4N|B Chain B, Crystal Structure Of The Activated Aerolysin Mutant H132d
Length = 470
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 270 YDSMM--TKGEMYGIWEKWTRKRKFMYFLARRFPRSLVYFYRQTFLSGKHGKIDKWLSLS 327
YD+ +K YG+ EK T K KF + L S+ Q++ S G LS S
Sbjct: 221 YDTATNWSKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQS 280
Query: 328 LGKRDRALIEDPIYEEFWQRDV 349
+ A + P+ E ++ D+
Sbjct: 281 VRPTVPARSKIPVKIELYKADI 302
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 167 IVPHNFLSSRLAGIPGLKASLLEEFGIRLLTYDLPGFGESDPHPS-----RNLESSALDM 221
I+ H F ++R + A+ L + I + +D G G+SD +E + +
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIEDANAIL 109
Query: 222 SFFASSVGVNDKFWVLGYSSGGLHAWAALKYIPDRLAGAAMFAP 265
++ + V + +++G+S GG+ A PD + + AP
Sbjct: 110 NYVKTDPHVRN-IYLVGHSQGGVVASMLAGLYPDLIKKVVLLAP 152
>pdb|3C0M|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g
pdb|3C0M|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g
pdb|3C0N|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g At 2.2
A
pdb|3C0N|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g At 2.2
A
pdb|3C0O|A Chain A, Crystal Structure Of The Proaerolysin Mutant Y221g
Complexed With Mannose-6-Phosphate
pdb|3C0O|B Chain B, Crystal Structure Of The Proaerolysin Mutant Y221g
Complexed With Mannose-6-Phosphate
Length = 470
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 275 TKGEMYGIWEKWTRKRKFMYFLARRFPRSLVYFYRQTFLSGKHGKIDKWLSLSLGKRDRA 334
+K YG+ EK T K KF + L S+ Q++ S G LS S+ A
Sbjct: 228 SKTNTYGLSEKVTTKNKFKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPA 287
Query: 335 LIEDPIYEEFWQRDV 349
+ P+ E ++ D+
Sbjct: 288 RSKIPVKIELYKADI 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,670,151
Number of Sequences: 62578
Number of extensions: 505623
Number of successful extensions: 1017
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 43
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)