BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014502
(423 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359476047|ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Vitis vinifera]
gi|296081891|emb|CBI20896.3| unnamed protein product [Vitis vinifera]
Length = 420
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/425 (57%), Positives = 306/425 (72%), Gaps = 9/425 (2%)
Query: 1 MALACRVLSVAKSS---RYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKT 57
M RVLSVAK R +L+P R RL C+ SNPL+ +LLQ +S+IKT
Sbjct: 1 MGFVLRVLSVAKRGLRPRLVLIPCRSQRLFCDKPL------VSNPLLIKLLQESISRIKT 54
Query: 58 TLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LDS D F F SS FSWD L+T+L+SSSP KA LVLEWRL+KM++ NE L Y LI L
Sbjct: 55 VLDSEDNFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFL 114
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
KVQNVPFAM VF SMEA GIK S+VFN+LI CL SG+V+TALSLFEIM SSE KP
Sbjct: 115 CSKVQNVPFAMRVFNSMEAHGIKLTSSVFNALIYTCLSSGNVMTALSLFEIMQSSENCKP 174
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
NS+TY+ FIS +S+LGN AM WY A AGFS +++TYESLI G +++R+FD DRFY
Sbjct: 175 NSETYNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLRTYESLISGCVRSRNFDCADRFY 234
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEMM GI+P+ ILE +L GLC +R + +V+ LKF++ G W+IN +MA+KL+ Y E
Sbjct: 235 EEMMLSGIMPNGQILENILRGLCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEH 294
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G V+++EE L L NQS VL GIIR++A+ DRLDD+EYSVGRM KQG+SF+
Sbjct: 295 GTVEKMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCP 354
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+D+E V+C+YFR AY+RLDLFL HIKGSYKL ++TYD LVAGYRRAGLS KLD V++ M
Sbjct: 355 DDIEKVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGM 414
Query: 418 KFAEY 422
K A +
Sbjct: 415 KLAGF 419
>gi|147812171|emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
Length = 1331
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/404 (58%), Positives = 294/404 (72%), Gaps = 6/404 (1%)
Query: 19 MPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALI 78
+P R RL C+ SNPL+ +LLQ +S+IKT LDS D F F SS FSWD L+
Sbjct: 933 IPQRSQRLFCDKPL------VSNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILL 986
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG 138
T+L+SSSP KA LVLEWRL+KM++ NE L Y LI L KVQNVPFAM VF SMEA G
Sbjct: 987 TTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSMEAHG 1046
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
IK S+VFN+LIC CL SG+V+TALSLFEIM SSE KPNS+TY+ FIS +S+LGN AM
Sbjct: 1047 IKLTSSVFNALICTCLSSGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGNDKAM 1106
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
WY A AGFS +++TYESLI G ++R+FD DRFYEEMM GI+P ILE +L G
Sbjct: 1107 QAWYLAXKGAGFSADLRTYESLISGCXRSRNFDCADRFYEEMMLSGIMPBGQILENILRG 1166
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC +R + +V+ LKF++ G W+IN +MA+KL+ Y E G V+++EE L L NQS
Sbjct: 1167 LCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFA 1226
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
VL GIIR++A+ DRLDD+EYSVGRM KQG+SF+ +D+E V+C+YFR AY+RLDL
Sbjct: 1227 VLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDL 1286
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
FL HIKGSYKL ++TYD LVAGYRRAGLS KLD V++ MK A +
Sbjct: 1287 FLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAGF 1330
>gi|224092342|ref|XP_002309567.1| predicted protein [Populus trichocarpa]
gi|222855543|gb|EEE93090.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/427 (58%), Positives = 307/427 (71%), Gaps = 12/427 (2%)
Query: 1 MALACR-VLSVAK-SSRY-----LLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVS 53
MAL R V S+AK SR LL P+ F + ++ SSS+PL+S+LLQ P S
Sbjct: 1 MALVLRGVPSLAKRGSRIPQIIQLLFPIPF-----QAQHSFSTASSSDPLLSKLLQTPTS 55
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
+I TLDS F SSQ SWD LIT+L+SSSP+KA LVLEWRL +ML NE DEY+
Sbjct: 56 KIIITLDSDHSFNLKSSQLSWDPLITNLRSSSPEKAHLVLEWRLGRMLDDNEIDHDEYSS 115
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI+L GK+QNV AMHVF SMEA+GIKP ++VFNSL+ ACL S +V+TALSLFEIM +SE
Sbjct: 116 LISLCGKIQNVSLAMHVFASMEARGIKPTTSVFNSLLYACLLSSNVITALSLFEIMENSE 175
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
YKPNS+TYD F++GFS+L +V+ M W+ AAGFS ++Q YE LI G +KARDFD+
Sbjct: 176 SYKPNSETYDKFVAGFSNLRDVNKMQAWFVGKRAAGFSASLQNYECLISGCVKARDFDTA 235
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
DR YEEMMSLGI+PS+ I+E VLEG C R D+VK FL FLL ++IN NM + +V+
Sbjct: 236 DRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSCDKVKEFLNFLLECKFEINGNMIENVVRL 295
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
Y ELG+VDE+E LE L + NQ E LL GIIR YA+ D+LDDVE+SVGRM QG+S
Sbjct: 296 YSELGKVDEMEMLLEMLMEFNQVGEALLQLHCGIIRFYAMLDKLDDVEFSVGRMMSQGMS 355
Query: 354 FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
FKS DVE VI SYFR AY+RLDLFL+HIK YKL R+TYD LVAGYRR GL KL+ +
Sbjct: 356 FKSPSDVEKVISSYFRQEAYERLDLFLEHIKSYYKLTRSTYDLLVAGYRRVGLMEKLNLL 415
Query: 414 INEMKFA 420
+ +MK A
Sbjct: 416 MEDMKLA 422
>gi|255551056|ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544396|gb|EEF45917.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 416
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/422 (55%), Positives = 298/422 (70%), Gaps = 13/422 (3%)
Query: 2 ALACRVLSVAK-SSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLD 60
A+ RVLSVAK S+ L + + + T +SSNPL+S+LLQ+P S+IK+TLD
Sbjct: 6 AVVRRVLSVAKLQSQSLQIHFK-------SKQQYTITNSSNPLLSKLLQLPNSKIKSTLD 58
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120
S NSSQF +DAL+T+L SSSP+KA+LVLEWRLD MLK NE Y+ LI+L K
Sbjct: 59 S----DLNSSQFPFDALVTALASSSPEKARLVLEWRLDCMLKQNEIDHVHYSNLISLCAK 114
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNS 179
+ NV AM VFTSME GI P++ VFNSLI CL S +V+TALSLFEIM SE KP+S
Sbjct: 115 IHNVSLAMRVFTSMEGNGIIPNTTVFNSLIQVCLSSISNVLTALSLFEIMDISEFCKPDS 174
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+TYD F+ GFS+L +V M W+AA AAG++ NVQ YE LI +K +D D DR ++E
Sbjct: 175 QTYDTFVLGFSNLRDVVKMQAWFAAKKAAGYTANVQNYECLISTCVKTKDLDKADRLFDE 234
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
MMS+G++PS ILE VLEGLC RR DRV+ FL FLL ++ N NM +K+V+ Y ELG+
Sbjct: 235 MMSMGVMPSAAILEWVLEGLCKRRDCDRVRGFLNFLLECRFEFNGNMIEKIVELYSELGK 294
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
VDE+E+ L+ + NQ E L GIIR YA +DRLDDVEYSVGRM G+ F+S +D
Sbjct: 295 VDEMEKLLDICAEFNQVGETLSRLHCGIIRFYAKADRLDDVEYSVGRMTSSGMLFRSPDD 354
Query: 360 VEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
VE VI SYFR AYDRLDLFL+H+KG +KL R+TYD LVAGYRRAGL+ KL+ V+ +MK
Sbjct: 355 VEKVISSYFRKEAYDRLDLFLEHVKGYHKLTRSTYDLLVAGYRRAGLAEKLELVMLDMKL 414
Query: 420 AE 421
A+
Sbjct: 415 AD 416
>gi|356554511|ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 421
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/380 (54%), Positives = 270/380 (71%), Gaps = 2/380 (0%)
Query: 42 PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML 101
PL+ +LLQVP S IKTTLD ++ + SSQ SWD LITSL SS KA+L+LEW L+KML
Sbjct: 40 PLLLKLLQVPNSHIKTTLDQ-EMASLQSSQRSWDFLITSLSPSSSDKARLILEWILEKML 98
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
K NE D ++ LI L GKV++V M VF+SMEA G+KP+S VFNSLI CL S D+VT
Sbjct: 99 KENEKDRDLFSELIFLCGKVKDVMLGMRVFSSMEATGVKPNSLVFNSLISVCLSSHDIVT 158
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+SLFEIM SSE YKP+ TY+ FIS FS GNVDAM WY+A AA ++Q +ESLI
Sbjct: 159 AVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAARLGPDLQMFESLI 218
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G + +R F DR +EEMM GI+PS I+E +L G+C +++L R + F F + GW+
Sbjct: 219 SGCVNSRKFKIADRIFEEMMISGIVPSASIIESMLNGICKQKRLGRAEEFFTFAMDSGWE 278
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLYALSDRLDDV 340
INENM KLV Y +LG+ +E+E L+T+ K C + VL GI+++YA+ DRLDD+
Sbjct: 279 INENMVDKLVAMYLQLGKAEEMEGLLKTMMKPCVTTTGVLTRIHCGIVKMYAMVDRLDDI 338
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
E++VGRM KQGLSF SA+DVE VICSYFR AYDRLD+FL+ +K Y L ++TYD L++G
Sbjct: 339 EFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDIFLECLKRCYVLNKSTYDLLISG 398
Query: 401 YRRAGLSGKLDSVINEMKFA 420
Y+RA L K++ V+ +MK A
Sbjct: 399 YKRARLLEKVERVMEDMKSA 418
>gi|357436533|ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477590|gb|AES58793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 428
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 189/366 (51%), Positives = 250/366 (68%), Gaps = 2/366 (0%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
S IK TLD + + +S S+D LITSL SS +K LVLEW L+K+LK N ++
Sbjct: 49 SHIKPTLDH-EFPSLPTSLLSFDFLITSLSPSS-QKPNLVLEWILEKLLKENVKDHGRFS 106
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
LI L GK++NV ++VFTSME G+KP S VFNSLI ACL S D+VTA SLFEIM SS
Sbjct: 107 ELIFLCGKLKNVQLGINVFTSMEGVGVKPTSLVFNSLISACLSSHDIVTAYSLFEIMESS 166
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
E YKP+ TY+ FIS FS GNVDAM WY+A A G ++QT+ES+I G + +++++
Sbjct: 167 ENYKPDFHTYNNFISAFSKSGNVDAMLAWYSAKKATGLGPDLQTFESVISGCVNSKNYEI 226
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
DR +EEM +IP++ ILE +L+G C+++ L R F KF+L W+I+E MA LV
Sbjct: 227 ADRVFEEMKISEMIPNVTILESMLKGFCSQKSLCRANEFFKFVLDNRWQISETMAAMLVV 286
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
Y E G+V+++EE LET+T VL GI+ +YA+ DRLD+VE SVGRM KQG+
Sbjct: 287 LYHEQGQVEKMEELLETITSYPIDSGVLSQIHCGIVTMYAMLDRLDEVELSVGRMLKQGM 346
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
SF S++DVE VICSYFR AYDRLD+FL+ IK Y R+TYD L++GYRRA L K+D
Sbjct: 347 SFTSSDDVEKVICSYFRKEAYDRLDIFLECIKNCYVHTRSTYDLLISGYRRANLHEKVDL 406
Query: 413 VINEMK 418
V+ +M+
Sbjct: 407 VLADME 412
>gi|242042151|ref|XP_002468470.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor]
gi|241922324|gb|EER95468.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor]
Length = 409
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/402 (40%), Positives = 246/402 (61%), Gaps = 6/402 (1%)
Query: 25 RLLCNTNTNSTSVSSSNP--LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL- 81
RL T + +V+S L++RL+ P ++K T++ + W+ L +L
Sbjct: 9 RLWRGLGTAAAAVASGTDGNLLARLVSEPECRVKATMEEAASSGTHRDGAFWEPLAAALL 68
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
++SSP KA L+LEW L+K+LK N + Y+ +I G+ +N AM VF +EA+GI+
Sbjct: 69 RASSPTKAHLILEWELEKLLKENIQDCEPYSRIIRFCGQTRNATLAMRVFECVEAKGIQL 128
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
++ +FN+LI A L +GD+++A++L+E M + PNS TYDAFI FS LG+ AM W
Sbjct: 129 NTNIFNALINAFLSAGDLLSAMTLYESMEDMDGCNPNSATYDAFICAFSLLGSGHAMMSW 188
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
Y A AGF+ ++QT+ESLI G ++ D +EEM++L I P+ ILE LE L
Sbjct: 189 YVAAKNAGFTPSIQTFESLITGFVQLNMLDDAKTIFEEMIALEIKPNSTILEASLEILYR 248
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVL 320
+ + RV+ FLK + G W++N+ + +L + + G +DE+E+ L + K S E
Sbjct: 249 KEEASRVRDFLKRVSDGNWELNKAIVVRLTRICLDGGEIDEMEQLLALIQKGPHLSSETQ 308
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
LH GIIR YA +D+L D+E+++ RM G+ F EDVE++ICSYFR +DRLDLFL
Sbjct: 309 LH--HGIIRFYAKADQLADMEHAIYRMLDNGVVFMCPEDVEVIICSYFRHREFDRLDLFL 366
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+ I+ +KL R+TYD LVAGYR+ L +LDS I +M+ A +
Sbjct: 367 NRIRNLFKLNRSTYDILVAGYRKFDLHERLDSTIADMREAGF 408
>gi|357113964|ref|XP_003558771.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g48000-like [Brachypodium distachyon]
Length = 413
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 239/386 (61%), Gaps = 8/386 (2%)
Query: 42 PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKM 100
PL++RL+ P ++K T++ A + W+ L +L ++SS KA LVLEW+L+K+
Sbjct: 30 PLLARLVAEPEFRVKATMEEASSSAPHRDAAFWEPLAAALLRASSLGKAHLVLEWKLEKL 89
Query: 101 LK---GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
LK N SC + Y+ +I G+ +N AM VF +EAQGI+ ++ +FN+LI A L G
Sbjct: 90 LKEGVHNHSC-EPYSTIIRFCGETRNAALAMRVFEGVEAQGIQLNTGIFNALINAFLSVG 148
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D++ A++L+E M E+ KP+S TYDAFIS FS +G+ DAM WY A A F ++QT+
Sbjct: 149 DLLAAVTLYETMEGMEDCKPDSATYDAFISAFSRIGSGDAMMSWYLAAKNAEFIPSIQTF 208
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
ESLI G ++ D + +EEM+S I P+ ILE LE L ++ +RVK F+K
Sbjct: 209 ESLIVGLVRLNRLDDDEVVFEEMISFEIKPNFTILEAQLEVLSRTKEANRVKRFIKKFSD 268
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETL-TKCNQSPEVLLHFFSGIIRLYALSDR 336
G W++N+ +L + + VD++E+ L + T + S LH SGIIR YA +DR
Sbjct: 269 GNWELNKATVGRLTRLCLDGCEVDQMEQLLALIQTGVDLSSVTRLH--SGIIRFYASTDR 326
Query: 337 LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDF 396
L D+E ++ RM G++F EDVE VICSYFR +DRLD+FL+ I+ Y+L R+TYD
Sbjct: 327 LPDMENAICRMFDDGMTFMCPEDVEAVICSYFRQKDFDRLDMFLNRIRSLYRLTRSTYDI 386
Query: 397 LVAGYRRAGLSGKLDSVINEMKFAEY 422
LVAG+RR L LDS I +M+ A +
Sbjct: 387 LVAGFRRFDLHQPLDSTIKDMREAGF 412
>gi|414864901|tpg|DAA43458.1| TPA: hypothetical protein ZEAMMB73_843092 [Zea mays]
Length = 410
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/390 (39%), Positives = 236/390 (60%), Gaps = 4/390 (1%)
Query: 30 TNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKK 88
T + ++ + L +RL+ P ++K T++ + W+ +T+L ++SSP K
Sbjct: 16 TAAAAAALGTDGNLFARLVSEPECRVKATMEEAASSGTHRDGAFWEPPVTALLRASSPTK 75
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A L+LEW+L+K+LK + + Y+ +I G+ +N FAM VF +EA+GI+ ++ + N+
Sbjct: 76 AHLILEWKLEKLLKEDIQDCEPYSRIIRFCGQTRNATFAMRVFECVEAKGIQLNTNICNA 135
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
L+ A L +GD+++A++L+E M S + PNS TYDAFI FS LG+ AM WY A A
Sbjct: 136 LVDAFLSAGDLLSAMTLYETMESMDACSPNSATYDAFICAFSLLGSGHAMMSWYVAAKNA 195
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF+ ++Q +ESLI G ++ D +EEM++L I P+ ILE LE L + + RV
Sbjct: 196 GFTPSIQAFESLITGFVRLNMLDDAKTVFEEMIALEIKPNSTILEASLEILSRKEETSRV 255
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
FLK G W++N+ +L + + G +DE+E+ L + K + E LH GI
Sbjct: 256 GDFLKRARDGNWELNKATVVRLTRICLDGGVIDEMEQLLALIQKGTHLNSETQLH--HGI 313
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY 387
IR YA +DRL D+E ++ RM G+ F EDV+++IC YFR +DRLDLFL+ I+ +
Sbjct: 314 IRFYANADRLADMEDAIYRMLDNGVMFTCPEDVDVIICCYFRHREFDRLDLFLNRIRSLF 373
Query: 388 KLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
KL R+TYD LVAGYR+ L +LDS I +M
Sbjct: 374 KLNRSTYDILVAGYRKFDLHERLDSTIADM 403
>gi|125542489|gb|EAY88628.1| hypothetical protein OsI_10104 [Oryza sativa Indica Group]
Length = 409
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/403 (38%), Positives = 244/403 (60%), Gaps = 5/403 (1%)
Query: 22 RFDRLLCNTNTNSTSVSS-SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS 80
R R L S V + ++ L++RL+ P ++K T++ + ++ F W+ L +
Sbjct: 9 RLWRGLTTAAAASVGVEADTSALLARLVAEPEYRVKATMEEASGGSSAAAAF-WEPLAAA 67
Query: 81 L-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
L ++SSP KA LVLEW+L+K++K + Y+ +I + +N FAM VF +E GI
Sbjct: 68 LLRASSPAKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFEFVEELGI 127
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+ ++ +FN+LI A L GD++ A++L+E M E+ KPNS TYDAFIS FS LG+ AM
Sbjct: 128 QLNTGIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRLGSGHAMM 187
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
WY A+ AGF+ +++ +E L+ G +K D + +EEM+ I P+ ILE LE L
Sbjct: 188 SWYLASKDAGFTPSIKAFEYLVTGFVKLDRLDDAEVVFEEMICFEIKPNFAILEAKLELL 247
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
R+ +RVK FL+ + G +++E ++L++ ++ EL++ L + + S
Sbjct: 248 SRRKDPNRVKVFLELVSDGNQELSEATVERLIRLCLYEDKIGELDQLLSLVQGMHTSSLT 307
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
LH GIIR YA +DRL D+E+++ +M G+ F +EDVE VICSYFR +DRLDLF
Sbjct: 308 KLH--CGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFDRLDLF 365
Query: 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
L+ I+ YKL R+TYD L++GY+R L G+LD I +M+ A +
Sbjct: 366 LNRIRSLYKLTRSTYDILISGYQRLNLHGRLDLAIKDMREAGF 408
>gi|115450861|ref|NP_001049031.1| Os03g0159700 [Oryza sativa Japonica Group]
gi|22773243|gb|AAN06849.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108706296|gb|ABF94091.1| expressed protein [Oryza sativa Japonica Group]
gi|108706297|gb|ABF94092.1| expressed protein [Oryza sativa Japonica Group]
gi|113547502|dbj|BAF10945.1| Os03g0159700 [Oryza sativa Japonica Group]
gi|125584994|gb|EAZ25658.1| hypothetical protein OsJ_09489 [Oryza sativa Japonica Group]
gi|215693387|dbj|BAG88769.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 409
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 158/403 (39%), Positives = 243/403 (60%), Gaps = 5/403 (1%)
Query: 22 RFDRLLCNTNTNSTSVSS-SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS 80
R R L S V + ++ L++RL+ P ++K T++ + ++ F W+ L +
Sbjct: 9 RLWRGLTTAAAASVGVEADTSALLARLVAEPEYRVKATMEEASGGSSAAAAF-WEPLAAA 67
Query: 81 L-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
L ++SSP KA LVLEW+L+K++K + Y+ +I + +N FAM VF +E GI
Sbjct: 68 LLRASSPTKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFEFVEELGI 127
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+ ++ +FN+LI A L GD++ A++L+E M E+ KPNS TYDAFIS FS LG+ AM
Sbjct: 128 QLNTGIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRLGSGHAMM 187
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
WY A+ AGF+ +++ +E LI G +K D + +EEM+ I P+ ILE LE L
Sbjct: 188 SWYLASKDAGFTPSIKAFEYLITGFVKLDRLDDAEVVFEEMICFEIKPNFAILEAKLELL 247
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
R+ +RVK FL+ + G +++E ++L + ++ EL++ L + + S
Sbjct: 248 SRRKDPNRVKVFLELVSDGNQELSEATVERLTRLCLYEDKIGELDQLLSLVQGMHTSSLT 307
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
LH GIIR YA +DRL D+E+++ +M G+ F +EDVE VICSYFR +DRLDLF
Sbjct: 308 KLH--CGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFDRLDLF 365
Query: 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
L+ I+ YKL R+TYD L++GY+R L G+LD I +M+ A +
Sbjct: 366 LNRIRSLYKLTRSTYDILISGYQRLNLHGRLDLAIKDMREAGF 408
>gi|449437306|ref|XP_004136433.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449517255|ref|XP_004165661.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 320
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 144/316 (45%), Positives = 202/316 (63%), Gaps = 6/316 (1%)
Query: 1 MALACRV-LSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTL 59
+ALA V LSV S+ PL F + S+S +NPL+ +LLQ P S +K+ L
Sbjct: 9 LALARNVSLSVPLQSQQPHYPLIFRGFF----STDPSISITNPLLLKLLQEPTSSVKSVL 64
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
DS + SS+ S +AL+TSL SSS KKAQLVLEW+L+ M K NE LD Y LI L
Sbjct: 65 DSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINLICLC 124
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++N AM VF ME QG+KP FNSLI AC+ S +++TA S+FE+M +S+ +KPN
Sbjct: 125 GKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPN 184
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ T+ FIS F+ L +V++M WY+A A FS +++TYE+LIHGS+K+ FD + +E
Sbjct: 185 TDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFE 244
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ I+P+ ILE +LEGLC R+ D VK FL +L GW+I+ N+ +K + + E G
Sbjct: 245 EMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESG 304
Query: 299 RVDELEEQLETLTKCN 314
++ ++E L L K N
Sbjct: 305 ELEGMKEILTKLNKWN 320
>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 164/329 (49%), Gaps = 8/329 (2%)
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
V W+ K+ G E+ EYA +I+ +G++ A +F ME +GIK + FN+LI
Sbjct: 2 VFNWKKSKL--GWEANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIH 59
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+ + + AL LFE M ++ + +P TY+ IS +S +G + M K + AGFS
Sbjct: 60 SYGRNNEAHKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFS 119
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ TY +LI G ++A ++ + E+ + + + G ++++++
Sbjct: 120 PDRHTYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAV 179
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIR 329
+ G IN + + L++ Y +++E L+ + + +P V S +I
Sbjct: 180 FSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIM---DVTPGVQYGSRVHSMVIE 236
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YK 388
YA +++LD++E ++ RM + F S + + +I +Y R Y RL ++ +KG+ +
Sbjct: 237 SYADANKLDEMEAAISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWI 296
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEM 417
L+ + Y+ L++ Y + G +++ V EM
Sbjct: 297 LQSSIYNILISEYGKGGHLDRMEQVFREM 325
>gi|225436849|ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
[Vitis vinifera]
gi|296086664|emb|CBI32299.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 9/344 (2%)
Query: 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
SS P A V WR ++ +EYA I+++G+ +NV A+ +FT + IK
Sbjct: 112 SSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAVELFTEAANKQIKTT 171
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
S +N+L+ A +C+G +LF + P TY+ IS F L VD M +
Sbjct: 172 ST-YNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVFGRLMLVDHMEATF 230
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
S N+ TY ++I G + A ++ ++ + M I P I +L G
Sbjct: 231 REIKELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDINTHLLMLRGYAHS 290
Query: 263 RKLDRVKSFLKFLLGGGWKINEN---MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L +++ + + G +N+ + + ++ YC+ D + E++ L K E
Sbjct: 291 GNLQKMEETYELIKG---HVNDKEIPLIRAMICAYCKSSITDRV-EKIGALMKLIPENEY 346
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
+IR+YA D ++++E S+ + S K+ + +I +YFRC A DRL F
Sbjct: 347 RPWLNVMLIRVYAQEDWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRCNAVDRLANF 406
Query: 380 LDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+ + G + + R+ Y + Y +++SV+NEM+ + +
Sbjct: 407 VKRAECGGWHICRSLYHCKMVMYASQKRLEEMESVLNEMESSNF 450
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 131/287 (45%), Gaps = 17/287 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ +G++PD F++LI + V AL L++ +++S +KP+ TY A I
Sbjct: 132 ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF GN++ K NV TY SL+HG KA D D + M S G +
Sbjct: 192 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ GLCA K+D + + + + L+ YC LGR++E ++
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + P+ + ++ ++R + + RL++ + + M K+A ++ + +
Sbjct: 312 FKEMATKSCLPDRIT--YTCLVRGFCNASRLEEARFLLENM-------KTAAGIDPDVVT 362
Query: 367 Y-FRCAAYDRLDLFLDH-------IKGSYKLRRATYDFLVAGYRRAG 405
Y A Y R F++ I + TY L+ G +AG
Sbjct: 363 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 409
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 4/194 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A + M A PD+ +N+L+ G + A LF+ M
Sbjct: 257 YTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEM- 315
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI--AAGFSVNVQTYESLIHGSLKAR 228
+++ P+ TY + GF + ++ ++ N+ AAG +V TY ++ G +A+
Sbjct: 316 ATKSCLPDRITYTCLVRGFCNASRLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAK 374
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
F F +EM++ + P+ +++GLC ++D LK ++ + +
Sbjct: 375 RFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFN 434
Query: 289 KLVKCYCELGRVDE 302
++ C LG +DE
Sbjct: 435 SVIGALCRLGDMDE 448
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 121/306 (39%), Gaps = 17/306 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPN 178
K + A+ F M + + P+ +N ++ LC + + A + + M + P+
Sbjct: 19 KANQLKQALACFEKMR-EFVAPNERTYNVVVNG-LCKARLTSKAYEVLKEMRDGKSVAPD 76
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY I+GF G +D + + G + +V TY S++ G + D
Sbjct: 77 LVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMV 136
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR-VKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM G+ P ++ G C RK+D +K + + L WK + L+ +C+
Sbjct: 137 REMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCK 196
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G +++ + L + P V+ + G+ + L LD RM +G
Sbjct: 197 SGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR----RMTSKGCVP 252
Query: 355 KSAEDVEMVICSYFRCAAY--DRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLD 411
++ + CAA+ D L +D + + +Y+ L+ GY R G +
Sbjct: 253 NVVTYTTLI---HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAK 309
Query: 412 SVINEM 417
+ EM
Sbjct: 310 QLFKEM 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K V AM V +M + ++P FNS+I A GD+ A L + +
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL-VAM 456
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-------AMNKWYAANIAAGFSVNVQTYESLIHG 223
++ +P TY + GFS G ++ M K + +A V Q + +LI G
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRG 516
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
KAR+ D EE+ S P+ +++GL
Sbjct: 517 LCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGL 552
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 11/218 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ + A +F M + PD + L+ + + A L E M ++ P+
Sbjct: 301 RLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 360
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ++G+S ++ IA + N TY SLI G KA D +
Sbjct: 361 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKN 420
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ + PS+ V+ LC +D L + G + L++ + GR
Sbjct: 421 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 480
Query: 300 VDELEEQLETL--------TKCNQSPEVLLHFFSGIIR 329
++ E E + + N PE FS +IR
Sbjct: 481 MEIAYELFEVMRKKAKKSSSAANLVPE---QAFSALIR 515
>gi|224139152|ref|XP_002322993.1| predicted protein [Populus trichocarpa]
gi|222867623|gb|EEF04754.1| predicted protein [Populus trichocarpa]
Length = 360
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 148/310 (47%), Gaps = 3/310 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EYA I ++G +NV A+ +F + IK S ++N+L+ AC+C+G SLF M
Sbjct: 5 EYAKGIMIAGTDKNVDLAVEIFDEAIKKCIKTTS-MYNALMTACMCNGLAGKCESLFREM 63
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +P+ TY+ +S F L VD M + + S N+ TY +LI G +
Sbjct: 64 KRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTYNNLISGYVTVWM 123
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+DS+++ ++ M++ + P + +L G L++++ + + + +
Sbjct: 124 WDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTLIRA 183
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ YC+ + E +++E L + E +I+LYA DRL+ +E S+
Sbjct: 184 MICAYCK-SSIPERVQKIEALMRLIPEKEYRPWLNVLLIKLYAEEDRLEGMENSINEAFN 242
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSG 408
++ + ++ +I SYFRC A D+L F+ +++ R + + Y
Sbjct: 243 HRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKRLD 302
Query: 409 KLDSVINEMK 418
+++SV+ EM+
Sbjct: 303 EMESVLIEME 312
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 10/280 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIAL 117
L+ + F F+ +IT++ ++ L+ +D + G + + Y LIA
Sbjct: 135 LEEMKSAGFAPDAFTHTPIITAMANAGD------LDGAMDHLRSMGCDPNVVTYTALIAA 188
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ + + AM + M +G P+ +N L+ A LC +V A + + P
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDA-LCKLSMVGAAQDVVKKMIEGGFAP 247
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T+++ + GF GNVD K +A G NV TY +LI G K++ F
Sbjct: 248 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 307
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM + G+ P ++ GLC K++ + L+ + G G + + ++ +C+
Sbjct: 308 EEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 367
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
G++ E ++ L+ + K +SP+V+ + G+ +L +++
Sbjct: 368 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAE 407
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 8/290 (2%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F+ + FSW++L+ L KK + + ++L E + Y +I+ +
Sbjct: 70 IPGFSHTAFSWNSLLQVLVRC--KKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGD 127
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A+ + M++ G PD+ +I A +GD+ A+ M PN TY
Sbjct: 128 LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD----PNVVTYT 183
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I+ F+ ++ K G N+ TY L+ K + ++M+
Sbjct: 184 ALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG 243
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G P++ +++G C R +D + L ++ G + N L+ C+ + E
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 303
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+E LE + +P+ +S +I +D++++ E + RM G +
Sbjct: 304 KEVLEEMKTRGVTPDAFT--YSALIHGLCKADKIEEAEQMLRRMAGSGCT 351
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 12/262 (4%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDE- 110
+ K L+ + F++ ALI L KA + E ++ML+ C +
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHGLC-----KADKIEEA--EQMLRRMAGSGCTPDV 354
Query: 111 --YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y+ +I K + A M Q PD +N++I G + A + E
Sbjct: 355 VVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQ 414
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M S + P+ TY I+G + K AG + +V TY ++I G K
Sbjct: 415 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 474
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + + M G P++ ++ GLC RK+D + ++ + G N
Sbjct: 475 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYN 534
Query: 289 KLVKCYCELGRVDELEEQLETL 310
+V C GR+ E ++ ++ +
Sbjct: 535 TMVNGLCVSGRIKEAQQLVQRM 556
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 10/280 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIAL 117
L+ + F F+ +IT++ ++ L+ +D + G + + Y LIA
Sbjct: 13 LEEMKSAGFAPDAFTHTPIITAMANAGD------LDGAMDHLRSMGCDPNVVTYTALIAA 66
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ + + AM + M +G P+ +N L+ A LC +V A + + P
Sbjct: 67 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDA-LCKLSMVGAAQDVVKKMIEGGFAP 125
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T+++ + GF GNVD K +A G NV TY +LI G K++ F
Sbjct: 126 NVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 185
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM + G+ P ++ GLC K++ + L+ + G G + + ++ +C+
Sbjct: 186 EEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKS 245
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
G++ E ++ L+ + K +SP+V+ + G+ +L +++
Sbjct: 246 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAE 285
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 156/387 (40%), Gaps = 16/387 (4%)
Query: 39 SSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLD 98
+ P+I+ + + +D + + + ++ ALI + + KK + ++ +
Sbjct: 27 THTPIITAMANA--GDLDGAMDHLRSMGCDPNVVTYTALIAAFARA--KKLEEAMKLLEE 82
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+G L Y L+ K+ V A V M G P+ FNSL+ G+
Sbjct: 83 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 142
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V A L IMV ++ +PN TY A I G + A+G + + TY
Sbjct: 143 VDDARKLLGIMV-AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYS 201
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+LIHG KA + ++ M G P + + ++ C KL + L+ +
Sbjct: 202 ALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 261
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS-PEVLLHFFSGIIRLYALSDRL 337
+ ++ C+LG++ E + L+ + + P+V+ +S +I SD L
Sbjct: 262 RKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVV--TYSTVINGLCKSDML 319
Query: 338 DDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRAT 393
+ + + RM K G + DV +I +C + + L +K T
Sbjct: 320 VEAQKLLDRMCKAGCN----PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 375
Query: 394 YDFLVAGYRRAGLSGKLDSVINEMKFA 420
Y L++G +A + + V+ EM+ A
Sbjct: 376 YTTLISGLCKARKVDEAERVMEEMRNA 402
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 41/259 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M++ G PD+ +I A +GD+ A+ M PN TY A I
Sbjct: 9 ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD----PNVVTYTALI 64
Query: 187 SGFSSLGN--------------------------VDAMNKWYAAN---------IAAGFS 211
+ F+ VDA+ K I GF+
Sbjct: 65 AAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV T+ SL+ G K + D + M++ G+ P++ +++GLC +K K
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L+ + G + L+ C+ +++E E+ L + +P+V++ +S II +
Sbjct: 185 LEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV--YSSIIHAF 242
Query: 332 ALSDRLDDVEYSVGRMGKQ 350
S +L + + ++ M KQ
Sbjct: 243 CKSGKLLEAQKTLQEMRKQ 261
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%)
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNV 214
+GD+ AL L E M S+ + P++ T+ I+ ++ G++D AM+ + G NV
Sbjct: 3 AGDLHAALELLEEMKSAG-FAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDPNV 57
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI +A+ + + EEM G P++ +++ LC + + +K
Sbjct: 58 VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ GG+ N LV +C+ G VD+ + L + P V+ +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 165
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 12/262 (4%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDE- 110
+ K L+ + F++ ALI L KA + E ++ML+ C +
Sbjct: 180 EAKEVLEEMKASGVTPDAFTYSALIHGLC-----KADKIEEA--EQMLRRMAGSGCTPDV 232
Query: 111 --YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y+ +I K + A M Q PD +N++I G + A + +
Sbjct: 233 VVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQ 292
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M S + P+ TY I+G + K AG + +V TY ++I G K
Sbjct: 293 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 352
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + + M G P++ ++ GLC RK+D + ++ + G N
Sbjct: 353 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYN 412
Query: 289 KLVKCYCELGRVDELEEQLETL 310
+V C GR+ E ++ ++ +
Sbjct: 413 TMVNGLCVSGRIKEAQQLVQRM 434
>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
Length = 514
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 162/365 (44%), Gaps = 4/365 (1%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACL 114
+K DS D+ + + S + S P A V WR + ++EYA
Sbjct: 103 VKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEVFNWR-RRQGGSFPLTVEEYAKG 161
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IA++GK +++ A+ +F + +K S +N+L+ + +G S+F +
Sbjct: 162 IAVAGKSKHIDLAVGLFNEASNKRVKATST-YNALMGVFMFNGLADKCNSVFRDLKRDAG 220
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
PN TY+ IS F L VD M S NV TY SLI G + A + ++
Sbjct: 221 CVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPNVNTYNSLIAGYITAWMWKRME 280
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ + +M + I P+ +L G L++++ FL K N + + ++ Y
Sbjct: 281 QAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHHFLKDHVNKNNFPLIRAMIYAY 340
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
D++ +++ L K E +IR+YA +D L+ +E S+ + G S
Sbjct: 341 SRSSITDKV-HKIDALLKLIPEEEYRPWLNVKLIRVYAQADCLERMENSINEAFEHGTSV 399
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSV 413
+ + +I SYFRC A D+L F+ + S +++ R+ Y + + +++ V
Sbjct: 400 YTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSLYHCKMVMFASQNRLEEMECV 459
Query: 414 INEMK 418
++EMK
Sbjct: 460 LDEMK 464
>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 509
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 15/342 (4%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
S P A V WR + +EYA I ++G+ +NV A+ +F ++ K +
Sbjct: 128 SLPHLAVEVFNWRRKQTEWSTPMTHEEYAKGITIAGRAKNVDLAIEIFAEACSKRRK-KT 186
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
++N+L+ A + +G SLF P+ TY+ IS F VD M +
Sbjct: 187 CIYNALMGAYMYNGHYDKCQSLFLDFKKEANIGPSVVTYNILISVFGRSMLVDHMEATFR 246
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ S NV TY +LI G + A +D +++ ++ M I P + +L G
Sbjct: 247 ELMNLNISPNVSTYNNLIAGYVTAWMWDDMEQVFQLMKEGPIYPHLDTYLLMLRGYAHSG 306
Query: 264 KLDRVKSFLKFLLGGGWKINE-NMAQKLVKCYCE---LGRVDELEEQLETLTKCNQSP-- 317
+++++ K L+ +NE + + ++ YC+ R+ ++EE L + + P
Sbjct: 307 NIEKMEEMYK-LVQDHVNVNEVPLIRTMICAYCKSSITDRIKKIEELLRLIPEEEYRPWL 365
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
VLL I++YA + L+ +E + K + + + +I SYFRC A DRL
Sbjct: 366 NVLL------IKVYAQQNLLEAMENKIDEAFKHETTITTVGIMRTIIASYFRCNAVDRLA 419
Query: 378 LFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F+ + S +++ R+ Y + Y +++SV+N+M+
Sbjct: 420 DFVKRAECSGWRICRSLYHCKMVMYASEKRLDEMESVLNDME 461
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 158/374 (42%), Gaps = 12/374 (3%)
Query: 37 VSSSNPLISRLLQVPVSQIKTTL-DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
V S N L+ RL + + + + + + S F+++ +I L +A L
Sbjct: 216 VRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFE 275
Query: 96 RLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+ KG + Y LI GKV + A+ VF M+ G +PD +NSLI C C
Sbjct: 276 EMKA--KGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLI-NCFC 332
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ + + + +PN TY I F G + NK++ I G N
Sbjct: 333 KFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEF 392
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI + K D + + EM G+ +I +L+GLC ++ + L
Sbjct: 393 TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL-- 333
L GW +N+ + L Y + +++ + LE + K N P++LL+ +++ L
Sbjct: 453 LKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYG----TKIWGLCR 508
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRA 392
+ ++D + M GL+ S +I +YF+ + ++L + K+
Sbjct: 509 QNEIEDSMAVIREMMDCGLTANSY-IYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVV 567
Query: 393 TYDFLVAGYRRAGL 406
TY L+ G + GL
Sbjct: 568 TYGVLIDGLCKIGL 581
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 115/293 (39%), Gaps = 40/293 (13%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ F M G+ P +N +I GD+ A SLFE M ++ +P+ TY++
Sbjct: 234 LALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEM-KAKGLRPDIVTYNSL 292
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G+ +G + + AG +V TY SLI+ K + M G+
Sbjct: 293 IDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ +++ C L F ++ G + NE L+ C++G +L E
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIG---DLNE 409
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRL-DDVEYSVGRMGKQGLSFKSAEDVEMVI 364
+ ++ Q+ L I+ AL D L +D GRM + AE+
Sbjct: 410 AFKLESEMQQAGVNL-----NIVTYTALLDGLCED-----GRM-------REAEE----- 447
Query: 365 CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
LF +K + L + Y L GY +A + K ++ EM
Sbjct: 448 -------------LFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEM 487
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M + +KPD ++ + I ++ ++++ M+ NS Y I
Sbjct: 480 AMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG-LTANSYIYTTLI 538
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ +G G + V TY LI G K R+++ M G+
Sbjct: 539 DAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQ 598
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P+I I +++GLC L+ K+ +L G
Sbjct: 599 PNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKG 631
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI K+ V A+ F M G++P+ ++ +LI LC D + A +LF M
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDG-LCKNDCLEEAKNLFNEM 627
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ + P+ Y + I G GN + G +++ Y SLI G +
Sbjct: 628 LD-KGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQ 686
Query: 230 FDSVDRFYEEMMSLGIIP 247
+EM+ GIIP
Sbjct: 687 VQLAKSLLDEMLRKGIIP 704
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 5/248 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
VF M G PD +N+LI AL L M + Y PN +Y+ I
Sbjct: 149 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVID 208
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G VD + + G +V TY SLI G KA+ D + M G++P
Sbjct: 209 GFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMP 268
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ G C+ +L+ LK + G G + + L++ YC++GR E
Sbjct: 269 DTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVF 328
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++ + Q P ++ ++ YA L DV + M + G+ F+ ++IC+Y
Sbjct: 329 DSMVRKGQKPNSTIYHI--LLHGYATKGALIDVRDLLDLMIRDGIPFEH-RAFNILICAY 385
Query: 368 FRCAAYDR 375
+ A D+
Sbjct: 386 AKHGAVDK 393
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 10/293 (3%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC---LDEYACLIALSGKV 121
+ FS++ALI L KK+Q LE + G +C + Y +I K
Sbjct: 156 LGYTPDVFSYNALIKGL--CVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKE 213
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSK 180
V A +F M QG+ PD +NSLI LC + A+++ + M + P+++
Sbjct: 214 GEVDKAYFLFHEMMGQGLPPDVVTYNSLIDG-LCKAQAMDKAVAILQHMFD-KGVMPDTR 271
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I G+ SLG ++ + +G +V TY LI K ++ M
Sbjct: 272 TYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSM 331
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G P+ I +L G + L V+ L ++ G L+ Y + G V
Sbjct: 332 VRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAV 391
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
D+ + + P+V+ +S +I + + R++D Y +M +GLS
Sbjct: 392 DKAMTAFTEMRQNGLRPDVV--SYSTVIHILCKTGRVEDAVYHFNQMVSEGLS 442
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 3/267 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GI + FN LICA G V A++ F M +P+ +Y I G
Sbjct: 366 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEM-RQNGLRPDVVSYSTVIHILCKTG 424
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + ++ G S N+ ++ SLIHG ++ V+ EM++ GI P +
Sbjct: 425 RVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMN 484
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ LC ++ + F ++ G K + L+ YC +G++DE +QL+ +
Sbjct: 485 TIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSI 544
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
P+ ++ ++ Y + R++D M ++ + F + M+ +
Sbjct: 545 GLRPDSWT--YNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIV 602
Query: 374 DRLDLFLDHIKGSYKLRRATYDFLVAG 400
+L++ + +LR TY+ ++ G
Sbjct: 603 AARELYMKMVDRGTQLRIETYNTVLGG 629
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 151/370 (40%), Gaps = 44/370 (11%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++++LI L ++ + KA +L+ DK + + Y +I + + A+ +
Sbjct: 237 TYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT---YNIMIRGYCSLGQLEEAVRLL 293
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M G++PD ++ LI G A S+F+ MV + KPNS Y + G+++
Sbjct: 294 KKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQ-KPNSTIYHILLHGYAT 352
Query: 192 LGN-------VDAMNK---------------WYAANIAA-------------GFSVNVQT 216
G +D M + YA + A G +V +
Sbjct: 353 KGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVS 412
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++IH K + + +M+S G+ P+I ++ GLC+ + +V+ ++
Sbjct: 413 YSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI 472
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G + ++ C+ GRV E ++ + + P+V+ ++ +I Y +
Sbjct: 473 NRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVV--SYNTLIDGYCFVGK 530
Query: 337 LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYD 395
+D+ + RM GL S ++ YF+ D L L+ + + K T +
Sbjct: 531 MDESIKQLDRMVSIGLRPDSWT-YNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 589
Query: 396 FLVAGYRRAG 405
++ G +AG
Sbjct: 590 IMLHGLFQAG 599
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 1/185 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KPD +N+LI G + ++ + MVS +P+S TY++ ++G+ G V+
Sbjct: 510 GVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIG-LRPDSWTYNSLLNGYFKNGRVED 568
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
Y T ++HG +A + Y +M+ G I VL
Sbjct: 569 ALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLG 628
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC +D + L ++++ ++ ++GR+DE + + P
Sbjct: 629 GLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVP 688
Query: 318 EVLLH 322
+V+ +
Sbjct: 689 DVITY 693
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 5/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G+KP+ V+ +L+ + G A + + M+S+ +PN YD I
Sbjct: 332 AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG-VQPNKIMYDNLI 390
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + +K I G + TY L+ G + D D EM + GI+
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGIL 450
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ GLC + + L+ ++ G K N M L+ + + G + E
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEA 510
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE +TK N P+ L ++ +I+ + R+++ E ++ K+GL +I
Sbjct: 511 LEKMTKANVHPD--LFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGL-VPDEFTYSGLIHG 567
Query: 367 YFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + ++ D L + S K TY L+ GY ++ K+ S++ M
Sbjct: 568 YCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSM 619
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 13/248 (5%)
Query: 111 YACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y+ I ++G QN A ++ M ++G+KP++ ++ LI G++ A E
Sbjct: 454 YSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEK 513
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + + P+ Y++ I G S++G ++ ++YA G + TY LIHG K
Sbjct: 514 MTKANVH-PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTG 572
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + D+ +M++ G+ P+ +LEG ++V S L+ +LG G K + ++
Sbjct: 573 NLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYG 632
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVG-- 345
+++ L R + +E LT+ ++ V LH +S +I ++ D+E +VG
Sbjct: 633 IVIR---NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC---KIADMEKAVGLL 686
Query: 346 -RMGKQGL 352
M K+GL
Sbjct: 687 DEMAKEGL 694
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + +N+ A V T +E G+ PD +++SLI D+ A+ L + M
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM- 689
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E +P Y+A I GF G++ + + +A G N TY +LI G+ K D
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDI 749
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ GI P + + G L++ + + G+ N ++ L
Sbjct: 750 TDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTL 808
Query: 291 VKCYCELGRVDELEEQLETL 310
V +C+ G++ E E+ L +
Sbjct: 809 VHGFCKRGKLQETEKLLHVM 828
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+S+ +I L Q+ K+A +LE + + LK N YA LI K N+ A
Sbjct: 454 YSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM---YAPLIIGHSKEGNISLACEA 510
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M + PD +NSLI G + A + V P+ TY I G+
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYA-QVQKRGLVPDEFTYSGLIHGYC 569
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
GN++ ++ + +G N TY L+ G K+ D++ V + M+ G P
Sbjct: 570 KTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNH 629
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
I V+ L ++ L + G + ++ L+ C++ +++ L+ +
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689
Query: 311 TKCNQSPEVL 320
K P ++
Sbjct: 690 AKEGLEPGIV 699
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 1/189 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME GI PD +++ I A + D A +FE M + N TY+ ISG G
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEM-RRRDCAMNEVTYNVMISGLCRSG 292
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + + G S + TY +L++G K +EM G+ P+I +
Sbjct: 293 AVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYG 352
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++G K LK ++ G + N+ M L++ C++G++ + L+ + K
Sbjct: 353 TLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKV 412
Query: 314 NQSPEVLLH 322
P+ +
Sbjct: 413 GLRPDTFTY 421
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 19/169 (11%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M K G E + Y LI + ++ A +VF S+ A+G+ P+ + +LI
Sbjct: 686 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCK 745
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA--------MNKWYAANIA 207
+GD+ A L++ M+ P++ Y+ +G S +++ N+ YA
Sbjct: 746 NGDITDAFDLYKEMLD-RGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA---- 800
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
NV + +L+HG K ++ MM I+P+ +EKV+
Sbjct: 801 -----NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVV 844
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K N+ A + M G+KP++ + L+ S D S+ + M+
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSML 620
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + KP++ Y I S N++ G ++ Y SLI G K D
Sbjct: 621 GSGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM 679
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EM G+ P I +++G C + R ++ +L G N L
Sbjct: 680 EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTAL 739
Query: 291 VKCYCELGRVDE 302
+ C+ G + +
Sbjct: 740 IDGNCKNGDITD 751
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 6/168 (3%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ALI +S +A+ V + L K L N C+ Y LI + K ++ A ++
Sbjct: 701 YNALIDGFCRSGDISRARNVFDSILAKGLVPN--CV-TYTALIDGNCKNGDITDAFDLYK 757
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +GI PD+ V+N L C + D+ AL L E M + N ++ + GF
Sbjct: 758 EMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG--YANVSLFNTLVHGFCKR 815
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
G + K + N QT E ++ KA R + E+
Sbjct: 816 GKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 9/253 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + L S KA +V E +++++ G E + Y L + +
Sbjct: 76 LEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEEL--GVERTIKSYDALFKVILRRGRYMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M ++GI+P FN +I SG V TA FE M S E P+ TY+ I
Sbjct: 134 AKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDM-KSREISPDVITYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + ++ K++ NV TY +LI G + D R EEM GI
Sbjct: 193 NGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIK 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ +L GLC K+ +S LK +L +N + +L+ C+ G +D +
Sbjct: 253 PNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNLDAAAD 312
Query: 306 QLETLTKCNQSPE 318
L+ + + + E
Sbjct: 313 VLKAMIRLSVPTE 325
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+I + G+ + A + M +G++ D ++ +I + +G V ++ LF+ M E
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKM---E 107
Query: 174 E--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
E + K+YDA G +++ ++ G T+ +I G + +
Sbjct: 108 ELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVE 167
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ +RF+E+M S I P + ++ G +K++ + + + G + N L+
Sbjct: 168 TANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLI 227
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K Y + +VD+ +E + P + +
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGYGIKPNAITY 258
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++ A S+ + M
Sbjct: 223 YTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG-LCNAEKMSEARSILKEM 281
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++ + IS GN+DA A I Y LI KA
Sbjct: 282 LDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQ 341
Query: 230 FDSVDRFYEEMMSLGII 246
+D + ++++ II
Sbjct: 342 YDQAVKLLDKLIEKDII 358
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 134/283 (47%), Gaps = 11/283 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ L++ L S KA+++ +L D+M+K G+E + Y+ +I K+ N A+ +
Sbjct: 12 TFNTLLSGLCS----KAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGF 189
ME +G KP+ +N++I + LC +VT A+ F MV E P+ TY + + GF
Sbjct: 68 LKKMEEKGCKPNVVAYNTIIDS-LCKDRLVTEAMDFFSEMVK-EGIPPDVFTYSSILHGF 125
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+LG V+ + + N T+ LI G K R +E M G+ P +
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C+R ++D + + G N L+ +C+ GR+DE + L
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAE 245
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ + +P++ +S ++R + R + + + M GL
Sbjct: 246 MSHKSLTPDIFT--YSTLMRGFCQVGRPQEAQELLKEMCSYGL 286
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 3/202 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF +M +G++PD +N+L+ + A LF IM + PN ++Y+ I+G
Sbjct: 172 VFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM-DRKGCAPNVRSYNILINGH 230
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G +D A + ++ TY +L+ G + +EM S G++P++
Sbjct: 231 CKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNL 290
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
VL+GLC LD LK + + N + L++ C G+++ E
Sbjct: 291 ITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSN 350
Query: 310 LTKCNQSPEVLLH--FFSGIIR 329
L P V+ + SG+++
Sbjct: 351 LFVKGIQPTVVTYTVMISGLLK 372
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 115/281 (40%), Gaps = 5/281 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G++P FN+L+ ++ A+ LF+ MV ++P+ TY I+G +GN
Sbjct: 5 GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKM-GHEPDVITYSTIINGLCKMGNTTM 63
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G NV Y ++I K R F+ EM+ GI P + +L
Sbjct: 64 ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C +++ S K ++ N+ L+ C+ + E ET+T+ P
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEP 183
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
+V + ++ ++ Y ++D+ + M ++G + + ++I + + D
Sbjct: 184 DV--YTYNALVDGYCSRSQMDEAQKLFNIMDRKGCA-PNVRSYNILINGHCKSGRIDEAK 240
Query: 378 LFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
L + S TY L+ G+ + G + ++ EM
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+++ +GI+P + +I L G A LF M + PNS TY+ I
Sbjct: 344 ARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREM-AVNGCLPNSCTYNVII 402
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
GF G+ + + GFS + T+ L D +S D + M
Sbjct: 403 QGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML-------SDLESSDEIISQFM 450
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 13/285 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMH 129
+++ +I L ++ + +A+ VL+ +DK +K LD Y+ +I K Q V A
Sbjct: 201 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVK-----LDVVTYSTIIDGLCKAQAVDRAEG 255
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
V M +G+KPD +N++I LC V A + + M+ + KP+ TY+ I G
Sbjct: 256 VLQHMIDKGVKPDVVTYNTIIDG-LCKAQAVDRAEGVLQHMID-KGVKPDVVTYNTIIDG 313
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
VD + I ++QTY LIHG L ++ V R EEM + G+ P
Sbjct: 314 LCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPD 373
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +L+ LC K + ++ G K N + L+ Y G + +L + L+
Sbjct: 374 VVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLD 433
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ SP + F+ ++ YA +D+ + RM + GLS
Sbjct: 434 LMVANGISPNN--YIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLS 476
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 9/286 (3%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ +I L ++ + +A+ VL+ +DK +K + + Y +I K Q V A V
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD---VVTYNTIIDGLCKAQAVDRAEGVL 292
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +G+KPD +N++I LC V A + + M+ ++ KP+ +TY+ I G+
Sbjct: 293 QHMIDKGVKPDVVTYNTIIDG-LCKAQAVDRADGVLQHMID-KDVKPDIQTYNCLIHGYL 350
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
S G + + A G +V TY L+ K + + M+ GI P++
Sbjct: 351 STGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVT 410
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
I +L G AR + + L ++ G N + ++ Y + +DE +
Sbjct: 411 IYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRM 470
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
++ SP+V+ + +I R+DD +M G++ S
Sbjct: 471 SQHGLSPDVVT--YGILIDALCKLGRVDDAVLKFNQMINDGVTPNS 514
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M QG++P+ FN+++C G V+ A L + M +PN +Y+ I
Sbjct: 533 AEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM-ERVGVRPNVISYNTLI 591
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G D + ++ G ++ +Y++L+ G K D+ + EM+ G+
Sbjct: 592 GGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVT 651
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +L+GL R+ K ++ G + + ++ C+ VDE +
Sbjct: 652 PGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKI 711
Query: 307 LETLTKCNQSPEVL 320
++L + P ++
Sbjct: 712 FQSLCSKDLRPNII 725
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 20/294 (6%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV--SSEEYKPNSKTYDAFISGFSS 191
M G P+ N+L+ V AL L M PN TY+ I G
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
VD I G ++V TY ++I G KA+ D + + M+ G+ P +
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++GLC + +DR + L+ ++ G K + ++ C+ VD + L+ +
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV-------- 363
+ P++ ++ +I Y + +V + M +GL D ++V
Sbjct: 332 DKDVKPDI--QTYNCLIHGYLSTGEWKEVVRRLEEMYARGL------DPDVVTYSLLLDY 383
Query: 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+C +C + +F I+ K Y L+ GY G L +++ M
Sbjct: 384 LCKNGKCTEARK--IFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLM 435
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 116/301 (38%), Gaps = 13/301 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSL---ICACLCSGDVVTALSLFEIMVS--SEEYKPNSKT 181
A+ +F + FN L + CS A+SLF M S + +P+ T
Sbjct: 33 ALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCT 92
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYEEM 240
Y F LG ++ + + G+ VN L++G A+ D ++D M
Sbjct: 93 YSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRM 152
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL---GGGWKINENMAQKLVKCYCEL 297
G +P++ +L+GLC ++++ L + GG N ++ C+
Sbjct: 153 PEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKA 212
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
VD E L+ + +V+ +S II + +D E + M +G+
Sbjct: 213 QAVDRAEGVLQHMIDKGVKLDVVT--YSTIIDGLCKAQAVDRAEGVLQHMIDKGVK-PDV 269
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+I + A DR + L H I K TY+ ++ G +A + D V+
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329
Query: 417 M 417
M
Sbjct: 330 M 330
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 15/261 (5%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ +I L ++ + +A VL+ +DK +K + + Y CLI +
Sbjct: 306 TYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPD---IQTYNCLIHGYLSTGEWKEVVRRL 362
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M A+G+ PD + SL+ LC +G A +F M+ + KPN Y + G++
Sbjct: 363 EEMYARGLDPDVVTY-SLLLDYLCKNGKCTEARKIFYCMIR-KGIKPNVTIYGILLHGYA 420
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ G + + +A G S N + ++ K D + M G+ P +
Sbjct: 421 ARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVV 480
Query: 251 ILEKVLEGLCARRKLDRVK-SFLKF--LLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+++ LC KL RV + LKF ++ G N + LV C + R ++ EE
Sbjct: 481 TYGILIDALC---KLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELF 537
Query: 308 ETLTKCNQSPEVLLHFFSGII 328
+ P V+ FF+ I+
Sbjct: 538 FEMWDQGVRPNVV--FFNTIM 556
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 3/232 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A+ V +M A+ P + L+ + +G + A LF +M
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA 322
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S ++PNS Y + I GF+ G + + + AG+ +V T+ +I G K+ +F
Sbjct: 323 ASG-FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +EEMM G P++ +++GL ++ +K ++ G + L
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDV 340
+ +C+LGR+DE + L+ L KC+ SP + L+ G+ ++ + LDD+
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDL 493
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 20/320 (6%)
Query: 108 LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LD C + G K + A +F M ++G KPD+ +N LI LC
Sbjct: 504 LDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING-LCRSRENRVERA 562
Query: 166 FEIMVSSE--EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
F ++ E Y P++ TY G +G VD K + G++ +V Y +L G
Sbjct: 563 FALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
D ++EM+ G P ++ GL +KL+ F ++G G K
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPT 682
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP------EVLLHFFSGIIRLYALSDRL 337
LV+ C G VDE + E + + + L+H F +++ A
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLF 742
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDF 396
+D+ + R G + SA + ++ R ++ +L + G AT+
Sbjct: 743 EDM---ISR-GNVPTAVTSASLFDGLV----RSGKTEKAQELLQEMAAGGSPPHAATFTA 794
Query: 397 LVAGYRRAGLSGKLDSVINE 416
++ G R++ SGKL ++ E
Sbjct: 795 ILDGLRKSDESGKLLKLVQE 814
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 10/238 (4%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL--QSSSPKKAQLVLEWRL 97
PL L ++ V + L+ +N+ ++ AL T L Q + L E
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEM-- 639
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+ +G Y C+I K + + A F M +G KP A + +L+ A +G
Sbjct: 640 --VRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAG 697
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+V A FE M++ E + YDA I GF VDA K + I+ G T
Sbjct: 698 NVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTS 757
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
SL G +++ + +EM + G P +L+GL RK D LK +
Sbjct: 758 ASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGL---RKSDESGKLLKLV 812
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 2/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ F M+ + KPD F L+ CLC +G A +F M++ P+ + A
Sbjct: 173 AVTCFEIMKRKRCKPDLHTFLILV-DCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ V + + GF + Y ++I G KA + + M++
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P+ ++ LC L+R + + + G++ N + L+ + + GR+ E
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACS 351
Query: 306 QLETLTKCNQSPEVLLH 322
+ + + P+V+ H
Sbjct: 352 LFDEMVEAGYRPDVITH 368
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369
Query: 295 --------------------------CELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
++G VDE E + + C P+ FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
I +YA S R+ + E ++ +M + G E V+ S +C
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 374
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C G V A +F+ M + E P+S T+ + I+ ++
Sbjct: 375 EMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 434
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 435 GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369
Query: 295 --------------------------CELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
++G VDE E + + C P+ FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
I +YA S R+ + E ++ +M + G E V+ S +C
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 374
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C G V A +F+ M + E P+S T+ + I+ ++
Sbjct: 375 EMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 434
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 435 GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 2/205 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A HV M +G+KP+ SLI G + A LF +V S YKPN TY I
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMI 329
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G + + G + N TY +LIHG K FD +M G +
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFL 389
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I ++ G C + K+ L+ G +++ L+ +C+ G + +
Sbjct: 390 PNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDL 449
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLY 331
+ + + + P++ H ++ II +Y
Sbjct: 450 FKQMAEKSCHPDI--HTYTTIIAMY 472
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 103/232 (44%), Gaps = 5/232 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+P+ +++ A + G G + + AA A GF ++ T ++ + F +V
Sbjct: 178 RPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTD 237
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+ M +G P++ ++GLC R + + L+ ++G G K N L+ C
Sbjct: 238 LFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297
Query: 296 ELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
++G ++ L K + P V H ++ +I Y +L E +GRM +QGL+
Sbjct: 298 KIGWMERAFRLFLKLVKSSSYKPNV--HTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA- 354
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAG 405
+ +I + + ++DR ++ +K + TY+ ++ G+ + G
Sbjct: 355 PNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A V +QG+ D + LI G + AL LF+ M + + P+
Sbjct: 406 GKIQE---AYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQM-AEKSCHPD 461
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY I+ + ++ + + ++ G QTY S+I G + S + +E
Sbjct: 462 IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFE 521
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M+ G +P ++ LC +L+ ++ + +L
Sbjct: 522 RMVQHGCLPDSITYGALISSLCKESRLEEARALFETML 559
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 1/211 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y +I K + A + M QG+ P++ + +LI G A L
Sbjct: 322 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMN 381
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M E + PN TY+A I GF G + K + G ++ TY LI K
Sbjct: 382 KM-KLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQ 440
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+++M P I ++ C +R++++ + L G +
Sbjct: 441 GHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTY 500
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ YC LG++ + E + + P+
Sbjct: 501 TSMIAGYCRLGKLTSALKVFERMVQHGCLPD 531
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIA 116
++ + + F + ++++A+I KK ++ +++ +M LD+ Y LI
Sbjct: 380 MNKMKLEGFLPNIYTYNAIIGGFC----KKGKIQEAYKVLRMATSQGLHLDKVTYTILIT 435
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K ++ A+ +F M + PD + ++I + + LF+ +S
Sbjct: 436 EHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSI-GLV 494
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +TY + I+G+ LG + + K + + G + TY +LI K +
Sbjct: 495 PTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARAL 554
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+E M+ ++P + C R K+ SFL L + + A LV+
Sbjct: 555 FETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRL---DKRQQAHTADALVRKLST 611
Query: 297 LGRVD 301
+G +D
Sbjct: 612 VGNLD 616
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 3/232 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A+ V +M A+ P + L+ + +G + A LF +M
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMA 322
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S ++PNS Y + I GF+ G + + + AG+ +V T+ +I G K+ +F
Sbjct: 323 ASG-FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +EEMM G P++ +++GL ++ +K ++ G + L
Sbjct: 382 EQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICL 441
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDV 340
+ +C+LGR+DE + L+ L KC+ SP + L+ +G+ ++ LDD+
Sbjct: 442 LDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDL 493
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 23/338 (6%)
Query: 93 LEWRLDKML---KGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+E LD + K LD C + G K + A +F M ++G KPD+ +N
Sbjct: 486 VEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYN 545
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
LI LC F ++ E+ Y P++ TY G +G VD K
Sbjct: 546 ILING-LCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEA 604
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G++ +V Y +L G D ++EM+ G P ++ GL +KL
Sbjct: 605 SSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKL 664
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP------EV 319
+ F ++G G K LV+ C G VDE + E++ + +
Sbjct: 665 EDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDA 724
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL-DL 378
L+H F +++ A +D+ + R G + SA + ++ R ++ +L
Sbjct: 725 LIHGFCKALKVDAALKLFEDM---ISR-GNVPTAVTSASLFDGLV----RSGKTEKAQEL 776
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+ G AT+ ++ G R++ SGKL ++ E
Sbjct: 777 LQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 66 AFNSSQFSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
+N+ ++ AL T L Q + L E + +G Y C+I KV+
Sbjct: 608 GWNADVVAYTALCTGLCYQGQVDRAVSLFQEM----VRQGGAPDAAAYCCIINGLIKVKK 663
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A F M +G KP A + +L+ A +G+V A FE M++ E + YD
Sbjct: 664 LEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYD 723
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I GF VDA K + I+ G T SL G +++ + +EM +
Sbjct: 724 ALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAG 783
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
G P +L+GL RK D LK +
Sbjct: 784 GSPPHAATFTAILDGL---RKSDESGKLLKLV 812
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 2/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ F M+ + KPD F L+ CLC +G A +F M++ P+ + A
Sbjct: 173 AVTCFEIMKRKRCKPDLHTFLILV-DCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ V + + GF + Y ++I G KA + + M++
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P+ ++ LC L+R + + + G++ N + L+ + + GR+ E
Sbjct: 292 VPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACS 351
Query: 306 QLETLTKCNQSPEVLLH 322
+ + + P+V+ H
Sbjct: 352 LFDEMVEAGYRPDVITH 368
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A F M ++ I PD + ++I GD+V A LF M
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+S T+ I+G+ G++ + + I AG S NV TY +LI G K D
Sbjct: 414 C-KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS + EM +G+ P+I ++ GLC ++ + G + L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ G +D+ +E L+ + P ++ F+ ++ + L L+D E + M +
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 351 GLS 353
G++
Sbjct: 591 GIA 593
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 118/286 (41%), Gaps = 7/286 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+KP+S ++ S+I LC + A F M+ + P++ Y I GF
Sbjct: 307 MKRKGLKPNSYIYGSII-GLLCRICKLAEAEEAFSEMIR-QGILPDTVVYTTLIDGFCKR 364
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++ A +K++ + + +V TY ++I G + D + + EM G+ P
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ G C + ++ G N L+ C+ G +D E L + K
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P + ++ I+ S +++ VG GL+ + ++ +Y +
Sbjct: 485 IGLQPNIFT--YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT-YTTLMDAYCKSGE 541
Query: 373 YDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D+ L + G + T++ L+ G+ G+ + ++N M
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I ++ + A H+ ME +G PD +++++ G++ L E+M
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM- 307
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPNS Y + I + + + ++ I G + Y +LI G K D
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +F+ EM S I P + ++ G C + + G + + +L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ YC+ G + + + + SP V+ +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + EA G+ D+ + +L+ A SG++ A + + M+ + +P
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTI 561
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ K +A G + N T+ SL+ + + Y++
Sbjct: 562 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 621
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P E +++G C R + + + G G+ ++ + L+K + + +
Sbjct: 622 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681
Query: 300 VDELEEQLETLTK 312
E E + + +
Sbjct: 682 FLEAREVFDQMRR 694
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 5/189 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ ++ L+ + +S KAQ +L+ L K L+ + L G +++
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED- 579
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ M A+GI P++ FNSL+ ++ A ++++ M S P+ KTY+
Sbjct: 580 --GEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS-RGVGPDGKTYEN 636
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G N+ + GFSV+V TY LI G LK + F +++M G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 245 IIPSIPILE 253
+ I +
Sbjct: 697 LAADKEIFD 705
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS A+ VF G+ + A +N +I G + A L +++ +
Sbjct: 217 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELK 275
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y P+ +Y ++G+ G +D + K G N Y S+I +
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + EM+ GI+P + +++G C R + F
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 5/244 (2%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+DKM+ +G + + Y L+ +V ++ A+ + M +G +P++ +N+++ LC
Sbjct: 137 MDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHG-LC 195
Query: 156 SG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
SG + +AL LF+ M S P+ TY + G VD + A ++ G S NV
Sbjct: 196 SGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNV 255
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SL+HG KA D + M G P+I +++G C ++D L+
Sbjct: 256 VTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEE 315
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ GG + N L+ +C+ G+ ++ +E + + P L ++ ++ ++
Sbjct: 316 MVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN--LFTYNSLLDMFCKK 373
Query: 335 DRLD 338
D ++
Sbjct: 374 DEVE 377
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 12/300 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y +I K+ + A H+ M G +P+ + L+ A C C G A+ L E+M
Sbjct: 293 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC-GKAEDAIGLVEVM 351
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + Y PN TY++ + F V+ + ++ I G NV +Y ++I G KA
Sbjct: 352 VE-KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 410
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
E+M+S +P I +++ +C ++D + G N
Sbjct: 411 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 470
Query: 290 LVKCYCELGRVDELEEQLETLT-KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
LV C+ R D+ E L +T K SP+++ ++ +I S R+D +M
Sbjct: 471 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIIT--YNTVIDGLCKSKRVDRAYKLFLQML 528
Query: 349 KQGLSFKSAEDV--EMVICSYFRCAAYDRLDLFLD-HIKGSYKLRRATYDFLVAGYRRAG 405
GL + +DV +VI S + D + L+ +K + TY L+ G+ + G
Sbjct: 529 SDGL---APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTG 585
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 2/189 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G+K + V S++ +G A+ F M S+ P+S TY+ I+G S
Sbjct: 1 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM--SKTCPPDSVTYNTMINGLSKSD 58
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + + GF+ NV +Y +++HG KA ++ E+M+ G P +
Sbjct: 59 RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
V+ GLC ++D + ++ G + N LV +C +G +D E + +T+
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178
Query: 314 NQSPEVLLH 322
P + +
Sbjct: 179 GYRPNAITY 187
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 2/195 (1%)
Query: 127 AMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ +F ME G PD +++++ + + SG V A L E MVS + PN TY +
Sbjct: 203 ALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS-KGCSPNVVTYSSL 261
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G G +D +G S N+ TY ++I G K D EEM+ G
Sbjct: 262 LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 321
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ +L+ C K + ++ ++ G+ N L+ +C+ V+ +
Sbjct: 322 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 381
Query: 306 QLETLTKCNQSPEVL 320
L ++ + P V+
Sbjct: 382 LLSSMIQKGCVPNVV 396
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 4/228 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M G P+ +N+++ + V AL L E MV P+ +Y I
Sbjct: 63 AIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVM-RGCPPDVVSYTTVI 121
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G L VD + I G NV TY +L+ G + D D +M G
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL-LGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+ ++ GLC+ RKLD K + G + +V + G+VD+
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+E + SP V+ +S ++ + +LD+ + RM + G S
Sbjct: 242 LVEAMVSKGCSPNVVT--YSSLLHGLCKAGKLDEATALLQRMTRSGCS 287
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 2/211 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IA K V + + M + PD FN++I A + V A LF ++
Sbjct: 398 YNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 457
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S PN TY++ + G D A G S ++ TY ++I G K++
Sbjct: 458 ES-GCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKR 516
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + + +M+S G+ P V+ LC R +D + L+ +L G+
Sbjct: 517 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 576
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ +C+ G +D+ E L+ L P+V+
Sbjct: 577 LIDGFCKTGNLDKALEILQLLLSKGSYPDVV 607
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 6/221 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV + A + +M ++G P+ ++SL+ +G + A +L + M S P
Sbjct: 233 SGKVDD---ACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG-CSP 288
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G LG +D + G NV TY L+ K +
Sbjct: 289 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E M+ G +P++ +L+ C + +++R L ++ G N ++ C+
Sbjct: 349 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+V E LE + N P+++ F+ II + R+D
Sbjct: 409 TKVHEGVLLLEQMLSNNCVPDIVT--FNTIIDAMCKTYRVD 447
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 10/270 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMH 129
S++ +I L ++ ++L L++ML N C+ + + +I K V A
Sbjct: 397 SYNTVIAGLCKATKVHEGVLL---LEQMLSNN--CVPDIVTFNTIIDAMCKTYRVDIAYE 451
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++ G P+ +NSL+ S A L M + P+ TY+ I G
Sbjct: 452 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 511
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
VD K + ++ G + + TY +I K R D + E M+ G P
Sbjct: 512 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 571
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C LD+ L+ LL G + + + GR+ + E LET
Sbjct: 572 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 631
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + P+ + ++ +++ + + R +D
Sbjct: 632 MLRAGLVPDTVT--YNTLLKGFCDASRTED 659
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 1/182 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
QG PD +N++I S V A LF M+S + P+ TY IS +D
Sbjct: 495 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DGLAPDDVTYSIVISSLCKWRFMD 553
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
N + GF TY +LI G K + D + ++S G P + +
Sbjct: 554 EANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 613
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L R +L + L+ +L G + L+K +C+ R ++ + E + +C
Sbjct: 614 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCE 673
Query: 317 PE 318
P+
Sbjct: 674 PD 675
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + T +G P+ AV+N+LI +GD+ A+ +F+ M S+ PN +TY I
Sbjct: 198 AVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGM-QSKGCLPNVRTYTQLI 256
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G V+ Y+ I AG + NV TY +LI G + R M + G+
Sbjct: 257 CGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLA 316
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++ LC +++ + FL L+ G K+N+ + ++ C+ G+ D
Sbjct: 317 PNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNL 376
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
++ + P+ H +S +I
Sbjct: 377 MQKIITEGFVPDA--HMYSSLI 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 96/239 (40%), Gaps = 7/239 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G + +L+ +G V A+++F M + P+S Y +
Sbjct: 128 ACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWP-DGCAPDSHVYSIMV 186
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + GF NV Y +LI G D + ++ M S G +
Sbjct: 187 HGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCL 246
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++ G C K++R ++ G N L++ C G ++
Sbjct: 247 PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRL 306
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYAL--SDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
L ++ C +P + ++ ++ + AL R+++ + +G + ++G+ M+
Sbjct: 307 LHSMEACGLAP----NEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMI 361
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 146/383 (38%), Gaps = 65/383 (16%)
Query: 99 KMLKGNESC---LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
++L E+C +E+ CL+ + K + A S+ +GIK + ++ S+I A
Sbjct: 305 RLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDAL 364
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS---------SLGNVDAMNKWYAA 204
SG A +L + +++ E + P++ Y + I G SL N D + A
Sbjct: 365 CKSGKFDGAHNLMQKIIT-EGFVPDAHMYSSLIDGLCRENKLLEAISLLN-DMIESGVQA 422
Query: 205 NI---------------------------AAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N AAG +V TY I + + +
Sbjct: 423 NAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMM 482
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE------------- 284
+M+ G+ P++ +++G + + S LK ++ G K N+
Sbjct: 483 IQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKK 542
Query: 285 NMAQKLVKCYCELGRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N LV L ++ + LEE LE + K S + + IR + DRL++ +
Sbjct: 543 NSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSAS--YVYDCFIRCLSKVDRLEEAK 600
Query: 342 YSVGRMGKQGLSFKSAEDVE--MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVA 399
+ +G Q + +EDV M+ C Y + L +K +Y R +Y F++
Sbjct: 601 SFL--VGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIIC 658
Query: 400 GYRRAGLSGKLDSVINEMKFAEY 422
G S+ ++ EY
Sbjct: 659 ALCEEGSFHTAKSIFGDILSKEY 681
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A +VL L+ M E L Y + + K +N
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPIVLNNLLETMKPSREVIL--YNVTLKVFRKSKN 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +G+KPD+A F ++I SG A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKM-SSFGCEPDNVTLA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNV+ Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++L+ + ++ + K K L+ G+ N + L++ Y
Sbjct: 310 GVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDA 369
Query: 295 --------------------------CELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
++G VDE E + + C P+ FS +
Sbjct: 370 LVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
I +Y+ S R+ + E ++ +M + G E V+ S +C
Sbjct: 428 ITVYSCSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA LI G+ + A+ ++ M+ +G+ ++N+L+ C G V A +F+ M
Sbjct: 353 YAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMK 412
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E P+S T+ + I+ +S G V AGF + S+I KA+
Sbjct: 413 NCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 231 DSVDRFYEEMMSLGIIP 247
D V R +++++ LGI P
Sbjct: 473 DDVVRTFDQVLELGITP 489
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 3/193 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+ G +P+ V+N+LI +G++ AL +FE M PN +TY I G G V
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ ++ + AG NV TY +LI G R M + G++P+ +
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++ LC R K++ + FL L+ G K+NE + L+ C+ G++D +E ++ +
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383
Query: 316 SPEVLLHFFSGII 328
P+ H +S +I
Sbjct: 384 VPDA--HSYSSLI 394
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 128/304 (42%), Gaps = 21/304 (6%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+ +++ LI +L + ++AQL L + K +K NE Y LI K + A
Sbjct: 316 NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV---YTSLIDGLCKTGKIDAAD 372
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M ++G PD+ ++SLI LC ++ +L + + + + TY I
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDG-LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ K + IA G + ++ TY + + + + +M+ G+ P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC------------E 296
+ ++ G + + S + ++G GWK NE+ L++ +
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
+ + +L+ LE +T+ Q P + +S IR DRL++ ++ MG Q +
Sbjct: 552 IADMKDLQVLLEDITE-RQLP-LAADIYSCFIRCLCRVDRLEEAKHFF--MGMQNANLTP 607
Query: 357 AEDV 360
+EDV
Sbjct: 608 SEDV 611
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 1/215 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI ++P A TS+ G+ PDS + S + +G + A +F
Sbjct: 72 LRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFV 131
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M + + TY A + G G V + A + + Y +++HG +A
Sbjct: 132 LMPLRGCLR-TAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + EE MS G P+I + +++G C +++ + + G N
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L+ C+ G+V+ + + P V+ +
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTY 285
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+ G +P+ V+N+LI +G++ AL +FE M PN +TY I G G V
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ ++ + AG NV TY +LI G R M + G++P+ +
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++ LC R K++ + FL L+ G K+NE + L+ C+ G++D +E ++ +
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P+ H +S +I +L + M ++G+
Sbjct: 384 VPDA--HSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 128/304 (42%), Gaps = 21/304 (6%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+ +++ LI +L + ++AQL L + K +K NE Y LI K + A
Sbjct: 316 NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV---YTSLIDGLCKTGKIDAAD 372
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M ++G PD+ ++SLI LC ++ +L + + + + TY I
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDG-LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ K + IA G + ++ TY + + + + +M+ G+ P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC------------E 296
+ ++ G + + S + ++G GWK NE+ L++ +
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK 551
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
+ + +L+ LE +T+ Q P + +S IR DRL++ ++ MG Q +
Sbjct: 552 IADMKDLQVLLEDITE-RQLP-LAADIYSCFIRCLCRVDRLEEAKHFF--MGMQNANLTP 607
Query: 357 AEDV 360
+EDV
Sbjct: 608 SEDV 611
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 1/215 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI ++P A TS+ G+ PDS + S + +G + A +F
Sbjct: 72 LRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFV 131
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M + + TY A + G G V + A + + Y +++HG +A
Sbjct: 132 LMPLRGCLR-TAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + EE MS G P+I + +++G C +++ + + G N
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L+ C+ G+V+ + + P V+ +
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTY 285
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C++G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTE 325
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 15/222 (6%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
K E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++
Sbjct: 214 KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG-LCNAEKMS 272
Query: 162 -ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A S+ + MV ++ + IS +GN+DA A I Y L
Sbjct: 273 EARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVL 332
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGII----------PSIPILEKVLEGLCARRKLDRVKS 270
I KA +D + ++++ II PS ++E LC + + ++
Sbjct: 333 IENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPS--AYNPIVEYLCNNGQTSKAEA 390
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ L+ G + + L++ + + G D E L+ + +
Sbjct: 391 LVRQLMKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLKIMLR 431
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 6/266 (2%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
PKKA LV+ + + +G+ + L Y +I N A+ + M G KPD
Sbjct: 441 PKKAMLVMN---NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+ LIC + +A LF MV + PN TY A I G+ +D
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVD-DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+G NVQTY LIHG K +F + + M+ GI P++ +++GLC
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
++ G N L++ + G+V+E E L + P+ + +
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT--YV 674
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQG 351
+I Y +S +++ +GRM K G
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAG 700
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A LI LS ++ M + M ++G++P+ ++N++I A G+V A ++ + +
Sbjct: 185 ALLIHLS-RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
SE P++ TY + I G ++D+ + + G N TY +LI+G + +
Sbjct: 244 SE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
EM+ GI+P+ + LC
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALC 331
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 7/227 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ +G +P+ + +LI SG + A+ LF M S + PN+ TY+A I
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALI 397
Query: 187 SGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ + N + N+ G S N+ TY +I G D M+ G
Sbjct: 398 NIL--VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ +++G C L + GG K +E +L+ +C++ +++
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P + ++ +I Y ++LD + M + G
Sbjct: 516 GLFNEMVDDGLCPNEVT--YTALIDGYCKDEKLDTATSLLEHMKRSG 560
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 6/266 (2%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
PKKA LV+ + + +G+ + L Y +I N A+ + M G KPD
Sbjct: 441 PKKAMLVMN---NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+ LIC + +A LF MV + PN TY A I G+ +D
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVD-DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+G NVQTY LIHG K +F + + M+ GI P++ +++GLC
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
++ G N L++ + G+V+E E L + P+ + +
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT--YV 674
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQG 351
+I Y +S +++ +GRM K G
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAG 700
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A LI LS ++ M + M ++G++P+ ++N++I A G+V A ++ + +
Sbjct: 185 ALLIHLS-RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
SE P++ TY + I G ++D+ + + G N TY +LI+G + +
Sbjct: 244 SE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
EM+ GI+P+ + LC
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALC 331
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 7/227 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ +G +P+ + +LI SG + A+ LF M S + PN+ TY+A I
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM-SRDGVFPNTVTYNALI 397
Query: 187 SGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ + N + N+ G S N+ TY +I G D M+ G
Sbjct: 398 NIL--VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ +++G C L + GG K +E +L+ +C++ +++
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P + ++ +I Y ++LD + M + G
Sbjct: 516 GLFNEMVDDGLCPNEVT--YTALIDGYCKDEKLDTATSLLEHMKRSG 560
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
SE +PN Y+A I+ GNV + S + TY S+I G + D D
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
S + + +M G P+ ++ GLC +++ ++ ++ G + +
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327
Query: 292 KCYCELG 298
C++G
Sbjct: 328 IALCDMG 334
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 3/193 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+ G +P+ V+N+LI +G++ AL +FE M PN +TY I G G V
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ ++ + AG NV TY +LI G R M + G++P+ +
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVL 323
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++ LC R K++ + FL L+ G K+NE + L+ C+ G++D +E ++ +
Sbjct: 324 IDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383
Query: 316 SPEVLLHFFSGII 328
P+ H +S +I
Sbjct: 384 VPDA--HSYSSLI 394
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 146/361 (40%), Gaps = 24/361 (6%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI L S + +VL R+ + G E + Y LI ++ A +
Sbjct: 249 TYTELIHGLCKSGKVERAMVLFSRMVE--AGLEPNVVTYTALIQGQCNEGHLQCAFRLLH 306
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
ME G+ P+ F+ LI A LC + V LF + + K N Y + I G
Sbjct: 307 LMETNGLVPNDWTFSVLIDA-LCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G +DA ++ I+ GF + +Y SLI G + + E+MM GI S
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ L + K ++ G + V+ YCE GR+++ E + +
Sbjct: 426 TIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485
Query: 313 CNQSPEVLLHFFSGIIRLYA----LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
P ++ ++ +IR YA +S E VG+ +K ED V+
Sbjct: 486 RGVFPNLVT--YNTLIRGYANLGLVSQAFSTFEVMVGK------GWKPNEDSYTVLLRLV 537
Query: 369 --RCAAYDRLDLFLDHIKGSYKLRRATYD-----FLVAGYRRAGLSGKLDSVINEMKFAE 421
+ ++ + +D++ I L+ + YD L+ G + G + S+++ MK
Sbjct: 538 VKKSSSDNSVDIW--KIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHG 595
Query: 422 Y 422
Y
Sbjct: 596 Y 596
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 1/215 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI ++P A TS+ G+ PDS + S + +G + A +F
Sbjct: 72 LRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFV 131
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M + + TY A + G G V + A + + Y +++HG +A
Sbjct: 132 LMPLRGCLR-TAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + EE MS G P+I + +++G C +++ + + G N
Sbjct: 191 GRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTY 250
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L+ C+ G+V+ + + P V+ +
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTY 285
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 5/217 (2%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+ +++ LI +L + ++AQL L + K +K NE Y LI K + A
Sbjct: 316 NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVV---YTSLIDGLCKTGKIDAAD 372
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M ++G PD+ ++SLI LC ++ +L + + + + TY I
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDG-LCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDE 431
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ K + IA G + ++ TY + + + + +M+ G+ P+
Sbjct: 432 LVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPN 491
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ ++ G + + S + ++G GWK NE+
Sbjct: 492 LVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNED 528
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A F M ++ I PD + ++I GD+V A LF M
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 856
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+S T+ I+G+ G++ + + I AG S NV TY +LI G K D
Sbjct: 857 C-KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 915
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS + EM +G+ P+I ++ GLC ++ + G + L
Sbjct: 916 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 975
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ G +D+ +E L+ + P ++ F+ ++ + L L+D E + M +
Sbjct: 976 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAK 1033
Query: 351 GLS 353
G++
Sbjct: 1034 GIA 1036
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 118/286 (41%), Gaps = 7/286 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+KP+S ++ S+I LC + A F M+ + P++ Y I GF
Sbjct: 750 MKRKGLKPNSYIYGSII-GLLCRICKLAEAEEAFSEMIR-QGILPDTVVYTTLIDGFCKR 807
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++ A +K++ + + +V TY ++I G + D + + EM G+ P
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 867
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ G C + ++ G N L+ C+ G +D E L + K
Sbjct: 868 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P + ++ I+ S +++ VG GL+ + ++ +Y +
Sbjct: 928 IGLQPNIFT--YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT-YTTLMDAYCKSGE 984
Query: 373 YDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D+ L + G + T++ L+ G+ G+ + ++N M
Sbjct: 985 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I ++ + A H+ ME +G PD +++++ G++ L E+M
Sbjct: 692 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM- 750
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPNS Y + I + + + ++ I G + Y +LI G K D
Sbjct: 751 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 810
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +F+ EM S I P + ++ G C + + G + + +L
Sbjct: 811 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 870
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ G + + + + SP V+ ++ +I LD + M K
Sbjct: 871 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVT--YTTLIDGLCKEGDLDSANELLHEMWKI 928
Query: 351 GL 352
GL
Sbjct: 929 GL 930
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + EA G+ D+ + +L+ A SG++ A + + M+ + +P
Sbjct: 946 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTI 1004
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ K +A G + N T+ SL+ + + Y++
Sbjct: 1005 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 1064
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P E +++G C R + + + G G+ ++ + L+K + + +
Sbjct: 1065 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 1124
Query: 300 VDELEEQLETLTK 312
E E + + +
Sbjct: 1125 FLEAREVFDQMRR 1137
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 5/181 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ ++ L+ + +S KAQ +L+ L K L+ + L G +++
Sbjct: 964 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED- 1022
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ M A+GI P++ FNSL+ ++ A ++++ M S P+ KTY+
Sbjct: 1023 --GEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS-RGVGPDGKTYEN 1079
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G N+ + GFSV+V TY LI G LK + F +++M G
Sbjct: 1080 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 1139
Query: 245 I 245
+
Sbjct: 1140 L 1140
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS A+ VF G+ + A +N +I G + A L +++ +
Sbjct: 660 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELK 718
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y P+ +Y ++G+ G +D + K G N Y S+I +
Sbjct: 719 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 778
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + EM+ GI+P + +++G C R + F
Sbjct: 779 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 817
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 6/266 (2%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
PKKA LV+ + + +G+ + L Y +I N A+ + M G KPD
Sbjct: 441 PKKAMLVMN---NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+ LIC + +A LF MV + PN TY A I G+ +D
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVD-DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+G NVQTY LIHG K +F + + M+ GI P++ +++GLC
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
++ G N L++ + G+V+E E L + P+ + +
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT--YV 674
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQG 351
+I Y +S +++ +GRM K G
Sbjct: 675 KMIEAYIMSGKVEHAFNFLGRMIKAG 700
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A LI LS ++ M + M ++G++P+ ++N++I A G+V A ++ + +
Sbjct: 185 ALLIHLS-RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
SE P++ TY + I G ++D+ + + G N TY +LI+G + +
Sbjct: 244 SE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
EM+ GI+P+ + LC
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALC 331
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 7/227 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ +G +P+ + +LI SG + A+ LF M S + PN+ TY+A I
Sbjct: 339 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALI 397
Query: 187 SGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ + N + N+ G S N+ TY +I G D M+ G
Sbjct: 398 NIL--VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ +++G C L + GG K +E +L+ +C++ +++
Sbjct: 456 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 515
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P + ++ +I Y ++LD + M + G
Sbjct: 516 GLFNEMVDDGLCPNEVT--YTALIDGYCKDEKLDTATSLLEHMKRSG 560
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K Q V A VF M +G+KP++ +N++I + +V A +F+ MV + KP++
Sbjct: 237 KAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVD-KGVKPSN 295
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G VD + I G + TY ++I G KA+ D + +++
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQ 355
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P +++GLC + +DR + + ++ G K N L+ Y G+
Sbjct: 356 MIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
+E+ ++++ ++ + P+V +
Sbjct: 416 WEEVVQRIKEMSAHDLEPDVFTY 438
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 9/286 (3%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+ +++ +I L ++ A+ V + +DK +K + Y +I K Q V A
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNV---TYNTIIDGLCKAQAVDRAE 315
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFIS 187
VF M +G+KPD +N++I LC + A +F+ M+ + KP++ TY I
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDG-LCKAQAIDKAEGVFQQMID-KGVKPDNLTYTIIID 373
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G +VD + I G N TY LIHG L ++ V + +EM + + P
Sbjct: 374 GLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEP 433
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +L+ LC K + +S ++ G K + + ++ Y + G + E+ + L
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLL 493
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ SP F+ +I YA +D+V + +M +QGLS
Sbjct: 494 NLMVANGISPN--HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLS 537
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 6/307 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D M+ KG + + Y ++ GK + + M A GI P+ +FN++ICA
Sbjct: 458 FDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAK 517
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ + +F I + + PN TY I LG VD + I G + N
Sbjct: 518 RAMIDEVMHIF-IKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV 576
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ SL++G ++ V+ + EM++ GI P I VL LC ++ + + +
Sbjct: 577 VFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ G K + L+ +C R+DE + L+ + P ++ ++ ++ Y +
Sbjct: 637 VCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIV--SYNTLLHGYCKAG 694
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATY 394
R+D+ M ++G++ E ++ FR + + +L+++ IK TY
Sbjct: 695 RIDNAYCLFREMLRKGVT-PGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTY 753
Query: 395 DFLVAGY 401
++ G+
Sbjct: 754 SIILDGF 760
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 7/285 (2%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
S +++ +I L ++ + +A+ V + +D+ +K + Y +I K Q + A
Sbjct: 294 SNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHV---TYNTIIDGLCKAQAIDKAE 350
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF M +G+KPD+ + +I + V A +F+ M+ + KPN+ TY+ I G
Sbjct: 351 GVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID-KGVKPNNGTYNCLIHG 409
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ S G + + + A +V TY L+ K + ++ M+ GI PS
Sbjct: 410 YLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPS 469
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I +L G + L + L ++ G N + ++ Y + +DE+
Sbjct: 470 VTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFI 529
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP V+ + +I R+DD +M +G++
Sbjct: 530 KMKQQGLSPNVVT--YGTLIDALCKLGRVDDAVLQFNQMINEGVT 572
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 6/196 (3%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFI 186
+H+ + PD +N +I G V A SLF E+ VS P+ TY+ I
Sbjct: 178 LHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMGVS-----PDVVTYNTII 232
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G VD + + G N TY ++I G KA++ D + +++M+ G+
Sbjct: 233 DGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVK 292
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +++GLC + +DR + + ++ G K + ++ C+ +D+ E
Sbjct: 293 PSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGV 352
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+ L +
Sbjct: 353 FQQMIDKGVKPDNLTY 368
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C + G+V A + SM G+KPD +N+LI + + A+ L + MVS+
Sbjct: 618 CNLCKEGRVME---ARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA 674
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KPN +Y+ + G+ G +D + + G + V+TY ++++G ++ F
Sbjct: 675 G-LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSE 733
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
Y M+ + SI +L+G C D
Sbjct: 734 ARELYVNMIKSRKLWSICTYSIILDGFCKNNCFD 767
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 7/269 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + + +DS+ S++ LI +S +A +L+ + LK N +
Sbjct: 626 VMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN---IVS 682
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K + A +F M +G+ P +N+++ SG A L+ M+
Sbjct: 683 YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMI 742
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARD 229
S + TY + GF D K + + + +++ T+ +I G K R
Sbjct: 743 KSRKLWSIC-TYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRK 801
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D++D F + + G++PS+ + E L L+ + + G N +M
Sbjct: 802 EDAMDLF-AAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNA 860
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPE 318
L++ + G + L L + N S E
Sbjct: 861 LIRKLLDRGEIPRAGAYLSKLDEKNFSLE 889
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 6/266 (2%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
PKKA LV+ + + +G+ + L Y +I N A+ + M G KPD
Sbjct: 611 PKKAMLVMN---NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+ LIC + +A LF MV + PN TY A I G+ +D
Sbjct: 668 YTELICGFCKISKMESAFGLFNEMVD-DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 726
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+G NVQTY LIHG K +F + + M+ GI P++ +++GLC
Sbjct: 727 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 786
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
++ G N L++ + G+V+E E L + P+ + +
Sbjct: 787 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT--YV 844
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQG 351
+I Y +S +++ +GRM K G
Sbjct: 845 KMIEAYIMSGKVEHAFNFLGRMIKAG 870
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A LI LS ++ M + M ++G++P+ ++N++I A G+V A ++ + +
Sbjct: 355 ALLIHLS-RLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 413
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
SE P++ TY + I G ++D+ + + G N TY +LI+G + +
Sbjct: 414 SE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 472
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
EM+ GI+P+ + LC
Sbjct: 473 EAFDLIREMILHGILPTAHTCTGPIIALC 501
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 7/227 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ +G +P+ + +LI SG + A+ LF M S + PN+ TY+A I
Sbjct: 509 AWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNALI 567
Query: 187 SGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ + N + N+ G N+ TY +I G D M+ G
Sbjct: 568 NIL--VENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ +++G C L + GG K +E +L+ +C++ +++
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAF 685
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P + ++ +I Y ++LD + M + G
Sbjct: 686 GLFNEMVDDGLCPNEVT--YTALIDGYCKDEKLDTATSLLEHMKRSG 730
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 40/296 (13%)
Query: 95 WRL-DKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W+L +KM KG + Y +I L ++ + A F+ M QGI PD+ V+ +L+
Sbjct: 724 WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDG 783
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV----------------- 195
GD+ A F M S + P+ TY A ISGF +G++
Sbjct: 784 FCKRGDIRAASKFFYEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEP 842
Query: 196 ------DAMNKWYAAN------------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ MN + A I AG S NV TY +LI G K D DS +
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM +G+ P+I ++ GLC ++ + G + L+ YC+
Sbjct: 903 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
G +D+ +E L + P ++ F+ ++ + L L+D E + M +G++
Sbjct: 963 GEMDKAQEILTEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 1016
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K ++ A V M G P+ + +LI GD+ +A L M +PN
Sbjct: 856 KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG-LQPNI 914
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY++ ++G GN++ K AAG + + TY +L+ K+ + D E
Sbjct: 915 FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTE 974
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
M+ G+ P+I ++ G C L+ + L ++L G N LVK YC
Sbjct: 975 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYC 1030
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 130/319 (40%), Gaps = 7/319 (2%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDV 159
LKG + Y+ +I + + + M+ +G+KP+S + S+I LC +
Sbjct: 697 LKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSII-GLLCRICKL 755
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A F M+ + P++ Y + GF G++ A +K++ + + +V TY +
Sbjct: 756 AEAEEAFSEMIG-QGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 814
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+I G + D + + EM+ G+ P I +++ G C + ++ G
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG 874
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
N L+ C+ G +D E L + K P + ++ I+ S +++
Sbjct: 875 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT--YNSIVNGLCKSGNIEE 932
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLV 398
VG GL+ + ++ +Y + D+ L + G + T++ L+
Sbjct: 933 AVKLVGEFEAAGLNADTVT-YTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLM 991
Query: 399 AGYRRAGLSGKLDSVINEM 417
G+ G+ + ++N M
Sbjct: 992 NGFCLHGMLEDGEKLLNWM 1010
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 85/193 (44%), Gaps = 1/193 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + EA G+ D+ + +L+ A SG++ A + M+ + +P
Sbjct: 926 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLG-KGLQPTI 984
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ K +A G + N T+ L+ + + Y++
Sbjct: 985 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKD 1044
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P E +++G C R + + + G G+ ++ + L+K + + +
Sbjct: 1045 MCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKK 1104
Query: 300 VDELEEQLETLTK 312
E E + + +
Sbjct: 1105 FVEAREIFDQMRR 1117
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ ++ L+ + +S KAQ +L L K L+ + L G +++
Sbjct: 944 GLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLED- 1002
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ M A+GI P++ FN L+ ++ A ++++ M S +P+ KTY+
Sbjct: 1003 --GEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCS-RGVEPDGKTYEN 1059
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G + N+ + GFSV+V TY LI G K + F +++M G
Sbjct: 1060 LVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDG 1119
Query: 245 I 245
+
Sbjct: 1120 L 1120
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 3/240 (1%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS A+ VF G+ + A +N +I G + A L +++ +
Sbjct: 640 LARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLL-LLMELK 698
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y P+ +Y I+G+ G +D + K G N TY S+I +
Sbjct: 699 GYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEA 758
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ + EM+ GI+P + +++G C R + F + + ++
Sbjct: 759 EEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 818
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+C++G + E + + P+++ F+ ++ Y + + D M + G S
Sbjct: 819 FCQIGDMVEAGKLFHEMLCRGLEPDIIT--FTELMNGYCKAGHIKDAFRVHNHMIQAGCS 876
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 131/306 (42%), Gaps = 23/306 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GKV ++ +F M+ G PD +N LI C C FE M
Sbjct: 327 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLI-NCYCK---------FEKMP 376
Query: 171 SSEEY---------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ EY KPN TY I F G + K + G N TY SLI
Sbjct: 377 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ KA + + +M+ G+ +I +L+GLC ++ + + +L G
Sbjct: 437 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 496
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N+ + LV Y + R+++ + L+ +T+CN P+++L + II + +L++ +
Sbjct: 497 PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL--YGSIIWGHCSQRKLEETK 554
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+ M +G+S +I +YF+ + D L+ F + + TY L+ G
Sbjct: 555 LILEEMKSRGISANPVISTT-IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDG 613
Query: 401 YRRAGL 406
+AG+
Sbjct: 614 LCKAGI 619
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 3/228 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M+++GI + + ++I A +G AL+ F+ M + TY I G
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM-QDVGVEATIVTYCVLIDGL 614
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G V+ ++ ++ G NV Y SLI G K +S + ++EM G+ P I
Sbjct: 615 CKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDI 674
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G L + + + + ++ LV + + G + + +
Sbjct: 675 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 734
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
+ + PE +L ++R Y +LD+ M + GL +SA
Sbjct: 735 MIEKGILPEEVLCI--CLLREYYKRGQLDEAIELKNEMERMGLITESA 780
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-T 161
G E+ + Y LI K V A+ F M + G++P+ AV+ SLI LC + + +
Sbjct: 599 GVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG-LCKNNCIES 657
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ M P+ + A I G GN+ + ++ Y SL+
Sbjct: 658 AKKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLV 716
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + + +F+ EM+ GI+P + +L R +LD
Sbjct: 717 SGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLD 761
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY+ I G+++ + + G S +V TY SLI G K + V
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ EM +G +P I ++ C K+ R + + G K N L+ +C+
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406
Query: 297 LG 298
G
Sbjct: 407 EG 408
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 92/241 (38%), Gaps = 2/241 (0%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +++ + + S GN + K++ I AG + +V TY +I K D ++ R
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M +G+ P + +++G L+ V S + G + L+ CYC+
Sbjct: 312 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 371
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
++ E + P V+ +S +I + + M + GL
Sbjct: 372 FEKMPRAFEYFSEMKNNGLKPNVVT--YSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE 429
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
++ + + L D ++ KL TY L+ G +AG + + V
Sbjct: 430 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 489
Query: 417 M 417
M
Sbjct: 490 M 490
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 5/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G+KP+ V+ +L+ + G A + M+S+ +PN YD I
Sbjct: 334 AKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG-VQPNKIMYDNLI 392
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + +K I G + TY L+ G + D D EM + GI+
Sbjct: 393 RGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGIL 452
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ ++ GLC + + L+ ++ G K N M L+ + + G + E
Sbjct: 453 PNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACES 512
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE +TK N P+ L ++ +I+ + R+++ E ++ K+GL +I
Sbjct: 513 LENMTKANVLPD--LFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL-VPDEFTYSGLIHG 569
Query: 367 YFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + ++ D L + S K TY L+ GY ++ K+ S++ M
Sbjct: 570 YCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSM 621
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 13/250 (5%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+ Y I ++G QN A ++ M ++G+KP++ ++ LI G + A
Sbjct: 454 NAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESL 513
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M + P+ Y++ I G S++G ++ ++YA G + TY LIHG K
Sbjct: 514 ENMTKANVL-PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 572
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
R+ + D+ ++M++ G+ P+ +LEG ++V S L+ +LG G K + ++
Sbjct: 573 TRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHI 632
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVG 345
+++ L R + +E LT+ ++ V LH +S +I ++ D+E +VG
Sbjct: 633 YGIVIR---NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC---KMADMEKAVG 686
Query: 346 ---RMGKQGL 352
M K+GL
Sbjct: 687 LLDEMAKEGL 696
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + +N+ A V T +E G+ PD +++SLI D+ A+ L + M
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEM- 691
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E +P Y+A I GF G++ + + +A G N TY +LI G+ K D
Sbjct: 692 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDI 751
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y++M+ GI P + + G L++ + + G+ + ++ L
Sbjct: 752 TDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTL 810
Query: 291 VKCYCELGRVDELEEQLETL 310
V+ +C+ GR+ E E+ L +
Sbjct: 811 VRGFCKRGRLQETEKLLHVM 830
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME GI PD +++ + A + D A +FE M + N TY+ ISG G
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEM-RRRDCAMNEVTYNVMISGLCRSG 294
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + + G S + TY +L++G K +EM G+ P++ +
Sbjct: 295 AVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYA 354
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++G K L ++ G + N+ M L++ C++G++ + L + K
Sbjct: 355 TLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKV 414
Query: 314 NQSPEVLLH 322
P+ +
Sbjct: 415 GHRPDTFTY 423
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ +I L Q+ K+A +LE + + LK N YA LI K ++ A
Sbjct: 456 YTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM---YAPLIIGHSKEGHISLACES 512
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+M + PD +NSLI G + A + V P+ TY I G+
Sbjct: 513 LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYA-QVQKRGLVPDEFTYSGLIHGYC 571
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
N++ ++ + +G N TY L+ G K+ D + V + M+ G P
Sbjct: 572 KTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNH 631
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
I V+ L ++ L + G + ++ L+ C++ +++ L+ +
Sbjct: 632 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEM 691
Query: 311 TKCNQSPEVL 320
K P ++
Sbjct: 692 AKEGLEPGIV 701
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K +N+ A + M G+KP++ + L+ S D S+ + M+
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + KP++ Y I S N++ G ++ Y SLI G K D
Sbjct: 623 GSGD-KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADM 681
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EM G+ P I +++G C + R ++ +L G N L
Sbjct: 682 EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTAL 741
Query: 291 VKCYCELGRVDE 302
+ C+ G + +
Sbjct: 742 IDGNCKNGDITD 753
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + +D K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTE 325
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 15/219 (6%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG-LCNAEKMSEAR 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + IS GN+DA A I Y LI
Sbjct: 276 SILKEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII----------PSIPILEKVLEGLCARRKLDRVKSFLK 273
KA D + ++++ II PS ++E LC + + ++ ++
Sbjct: 336 FCKAGQHDKAVKLLDKLIEKDIILRPQSTLHMEPS--AYNPMIEYLCNNGQTAKAEALVR 393
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
LL G + + L++ + + G D E L+ + +
Sbjct: 394 QLLKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLKIMLR 431
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 3/233 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWR-LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMH 129
F D + L S K+ +L + L KM + G ++ + Y+ LI+ K+ + A
Sbjct: 387 FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M A G+KP+ ++ SLI G++ A L+ M + + PN+ T+ A ISG
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEM-TGKGISPNTYTFTALISGL 505
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ NK + + N TY LI G K + +EM+ G++P
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ GLC+ ++ + F+ L G K+NE L+ YC+ GR+D+
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDD 618
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 123/296 (41%), Gaps = 7/296 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
++ V F S F ++ALI S+ + +A+ + K L N+ Y+ LI
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV---TYSILIDS 399
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + A+H M GIK ++SLI G + A SLF+ M+++ KP
Sbjct: 400 FCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG-LKP 458
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N Y + ISG+ G + + Y G S N T+ +LI G A ++ +
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM+ +IP+ ++EG C R L ++ G + + L+ C
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
GRV E E + L Q + FS ++ Y RLDD + M +G++
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEMC--FSALLHGYCKEGRLDDALDACREMLGRGVA 632
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 1/198 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A + ++ G+ P V+N+LI + G + A SLF M + PN
Sbjct: 332 KKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLF-PND 390
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I F G +D + G V Y SLI G K + ++E
Sbjct: 391 VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G+ P++ I ++ G C +L + G G N L+ C R
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510
Query: 300 VDELEEQLETLTKCNQSP 317
+ E + + + N P
Sbjct: 511 MAEANKLFGEMVEWNVIP 528
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 29/299 (9%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ A+H+F + + G++PD V+ +++ + D + A + M SS +
Sbjct: 192 RIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESS-GCDLSV 250
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIA-----AGFSVNVQTYESLIHGSLKARDFDSVD 234
TY+ FI G V W A I G +V TY +L+ G K +F++ +
Sbjct: 251 ATYNVFIRGLCKNQRV-----WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRK------LDRVKSFLKFLLGGGWKINENMAQ 288
EM+ G +PS + +++GL R+K D V KF G + +
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGL--RKKGNIGSAFDLVNKVKKF----GVAPSLFVYN 359
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C+ G++DE E + P + +S +I + +LD + +G+M
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVT--YSILIDSFCKRGKLDVALHFLGKMT 417
Query: 349 KQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ G+ ++ C + A LF + I K Y L++GY + G
Sbjct: 418 EVGIKATVYPYSSLISGHCKLGKLRAAK--SLFDEMIANGLKPNVVIYTSLISGYCKEG 474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 127/306 (41%), Gaps = 14/306 (4%)
Query: 101 LKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
L+G + L+E L G K + A+ M +G+ D ++ LI L D
Sbjct: 591 LQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQD 650
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ + L + M + +P++ Y I + GN+ + ++ G NV TY
Sbjct: 651 RRSIIDLLKQM-HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYT 709
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+LI+G K D + EM++ +P+ L+ L + +++ LL
Sbjct: 710 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-E 768
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G+ N L++ +C+LGR+ E E L + SP+ + +S II Y R
Sbjct: 769 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCI--SYSTIIYEYC---RRG 823
Query: 339 DVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIKGSYKLRRATY 394
D++ ++ ++ + L+ D + C L +L D ++ K RATY
Sbjct: 824 DLKEAI-KLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 882
Query: 395 DFLVAG 400
+ L+ G
Sbjct: 883 NSLIHG 888
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 8/230 (3%)
Query: 75 DALITSLQSSSPKKAQLVLEWRL-DKMLKGNESCLDE---YACLIALSGKVQNVPFAMHV 130
+ L T++ ++ K L + + L D M+ +E CL Y LI K+ + A +
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMV--SEGCLPNVVTYTALINGLCKIGLMDKAELL 727
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M A P+ + + G++ A+ L ++++ E + N+ TY+ I GF
Sbjct: 728 CREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL--EGFLANTVTYNILIRGFC 785
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
LG + + I +G S + +Y ++I+ + D + +E M++ G+ P
Sbjct: 786 KLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTV 845
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ G C +L + ++ G K N L+ C + V
Sbjct: 846 AYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 895
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E L Y L + + A F M ++GI+P FN LI SG V TA
Sbjct: 110 GVERTLKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXXFNVLIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLITSQCTSGHLDAASDVLKAMIRLSVPTE 325
>gi|15224571|ref|NP_180636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75219588|sp|O49343.1|PP177_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g30780
gi|2880055|gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana]
gi|110736845|dbj|BAF00380.1| hypothetical protein [Arabidopsis thaliana]
gi|330253346|gb|AEC08440.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 452
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 148/336 (44%), Gaps = 11/336 (3%)
Query: 92 VLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
VLEWR + + C+ +EYA I ++G+ +++ A+++F + ++ S V+N
Sbjct: 88 VLEWRRGQ----KDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTAS-VYN 142
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ + +G SLF+ P TY+ +S + L V M +
Sbjct: 143 SLMSVYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQK 202
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
N TY LI G + A ++D ++ ++EM + P + +L G L+R
Sbjct: 203 VKLPPNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNR 262
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
++ + + + + + ++ YC+ V++ +++E L E L +
Sbjct: 263 MEEMYEVIKDQVGVNSGPLVRAMICAYCKKA-VEDRVQKIENLLSLLSGEEYLPWLNVLL 321
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS- 386
IRLYA D ++ +E + +Q + + +I +YFRC D L F+ + +
Sbjct: 322 IRLYAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAG 381
Query: 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+KL R+ Y + Y +++ V+NEM Y
Sbjct: 382 WKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNY 417
>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16390, chloroplastic; AltName: Full=Chloroplastic
RNA-binding protein P67; Flags: Precursor
gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 702
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 46/343 (13%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369
Query: 295 -------------------------CELGR-VDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
C R VDE E + + C P+ FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
I +YA S R+ + E ++ +M + G E V+ S +C
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 31/285 (10%)
Query: 82 QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
Q+ PK+A +EW +KM G E A +I G+ NV A+ ++ + +
Sbjct: 222 QNGVPKRA---VEW-FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWR 277
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
D+ F++LI SG+ L+++E M + KPN Y+ I S+G A
Sbjct: 278 IDAVTFSTLIRIYGVSGNYDGCLNIYEEM-KALGVKPNLVIYNRLID---SMGR--AKRP 331
Query: 201 W-----YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
W Y I GF+ N TY +L+ +AR D Y EM G+ ++ IL
Sbjct: 332 WQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTV-ILYNT 390
Query: 256 LEGLCA-RRKLDRVKSFLKFLLG------GGWKINENMAQKLVKCYCELGRVDELEEQLE 308
L +CA R +D + + W + L+ Y GRV E E L
Sbjct: 391 LLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFS-----SLITVYACSGRVSEAEAALL 445
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + P L + +I+ Y + ++DDV + ++ + G++
Sbjct: 446 QMREAGFEP--TLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 488
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 374
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C + V A +F+ M + E P+S T+ + I+ ++
Sbjct: 375 EMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 434
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 435 GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+V A+ +F +A+GIKPD V+NSL+ G ++ AL + M + E P+ +TY
Sbjct: 343 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTY 401
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +GN+ I G+ +V T+ +LI G K DS + E M
Sbjct: 402 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 461
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P VL GLC K++ V + ++ G N L++ +C R ++
Sbjct: 462 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC---RSNK 518
Query: 303 LEEQLETLTKCNQ 315
+EE + + K +Q
Sbjct: 519 MEEASKVIVKMSQ 531
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 148/358 (41%), Gaps = 24/358 (6%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAM 128
+++ LI L + S P++A L + N+ CL + Y +I K+ V A
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMM------NQGCLPDDFTYNTIIDGYCKISMVQEAT 313
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ +G PD + SLI GDV AL LF ++ KP+ Y++ + G
Sbjct: 314 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFN-EAQAKGIKPDIVVYNSLVKG 372
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G + + G ++QTY +I+G K + + + G +P
Sbjct: 373 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 432
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++G C R KLD ++ + G + ++ C+ G+V+E+ E +
Sbjct: 433 VFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ 492
Query: 309 --TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L C+ +P ++ +I + S+++++ + +M ++GL A +I
Sbjct: 493 EMILKGCHPNPIT----YNILIENFCRSNKMEEASKVIVKMSQEGLH-PDAVSFNTLIYG 547
Query: 367 YFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
+ R + L + + Y T++ L+ + SGKL+ + E F E +
Sbjct: 548 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF-----SGKLNMHMAEKIFDEML 600
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 3/215 (1%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+ ++++++ L + K V E + +LKG Y LI + +
Sbjct: 462 YGIAPDTITYNSVLNGLCKAG--KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 519
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A V M +G+ PD+ FN+LI +GD+ A LF+ + + Y + T++
Sbjct: 520 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ-KLEEKGYSATADTFNT 578
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I FS N+ K + ++ G + TY LI GS K + D EM+ G
Sbjct: 579 LIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 638
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
IPS+ +V+ L ++ + + ++ G
Sbjct: 639 FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIG 673
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 4/230 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+ + M A + PD +N+LI LC + + + ++ P+ TY+
Sbjct: 240 LPEAVRLVDGMRAYAV-PDVVTYNTLIRG-LCKKSMPQEAMHYLRRMMNQGCLPDDFTYN 297
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ + V + + GF + TY SLI+G D + + E +
Sbjct: 298 TIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK 357
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI P I + +++GLC + + + + G + ++ C++G + +
Sbjct: 358 GIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 417
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P+V F+ +I Y +LD V RM + G++
Sbjct: 418 TVVMNDAIMKGYLPDVFT--FNTLIDGYCKRLKLDSALQLVERMWEYGIA 465
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ + +++C G A LF+ M+ + + PN ++ + G+V
Sbjct: 154 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF-PNLAAFNKVLHALCKRGDVLEAGLLL 212
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
I G S+N+ TY I G +A R + M + +P + ++ GLC +
Sbjct: 213 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKK 271
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+L+ ++ G ++ ++ YC++ V E E L+
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 317
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M GI PD+ +NS++ +G V F+ M+ + PN TY+ I
Sbjct: 452 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH-PNPITYNILI 510
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F ++ +K G + ++ +LI+G + D + ++++ G
Sbjct: 511 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 570
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ + + + +L G + + + L+ C+ VD
Sbjct: 571 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMH 630
Query: 307 LETLTK 312
L + K
Sbjct: 631 LVEMIK 636
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + P+ A FN ++ A GDV+ A L V N TY+ +I
Sbjct: 173 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEA-GLLLGKVIQRGMSINLFTYNIWI 231
Query: 187 SGFSSLGN-------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
G G VD M + ++ TY +LI G K +
Sbjct: 232 RGLCEAGRLPEAVRLVDGMRAYAVPDVV--------TYNTLIRGLCKKSMPQEAMHYLRR 283
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
MM+ G +P +++G C + LK + G+ ++ L+ C G
Sbjct: 284 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 343
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+ E P+++++
Sbjct: 344 VERALELFNEAQAKGIKPDIVVY 366
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 6/216 (2%)
Query: 117 LSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+SG V+N + A+++ M + ++PD+ +N+L+ C +G+ A+ ++E +V
Sbjct: 201 MSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPG 260
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
PN TY+ + G LG + +A ++ TY ++IHG ++ D DS
Sbjct: 261 ASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAA 320
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
R Y EM+ G++P + I +L+G C ++ F + G + N ++K
Sbjct: 321 RVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGL 379
Query: 295 CELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIR 329
+ G VD+ + E L K + SP+++ FS +I
Sbjct: 380 FDGGMVDKATDLWELLEKDDSLSPDMVT--FSTMIH 413
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 2/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ + G + D ++S+I G + A+ L+E +S + +KPNS Y+A I
Sbjct: 424 SLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYE-KISMDSFKPNSHIYNALI 482
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF + Y+ S TY +LIHG KA + RF EM+ G +
Sbjct: 483 NGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCM 542
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ GLC +K+D + +L G + + M L+ C G+VDE +
Sbjct: 543 LDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQL 602
Query: 307 L-ETLTKCNQSPEVLLH 322
L E K N P V+ +
Sbjct: 603 LSEMKEKNNCCPNVVTY 619
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
++ Y LI + + + A+ ++ + +G++ D + N LI +G V A L
Sbjct: 545 VNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLS 604
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M PN TY+ + GF G D + A + G ++ +Y + I G
Sbjct: 605 EMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSC 664
Query: 228 RDFDSVDRFYEEMMSLGIIPS 248
+ EM++ GIIP+
Sbjct: 665 NRTPEGVQLLNEMLASGIIPT 685
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN LI SG V TA
Sbjct: 110 GVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + + K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLITSQCKSGHLDAASDVLKAMIRLSVPTE 325
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+V A+ +F +A+GIKPD V+NSL+ G ++ AL + M + E P+ +TY
Sbjct: 340 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTY 398
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +GN+ I G+ +V T+ +LI G K DS + E M
Sbjct: 399 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 458
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P VL GLC K++ V + ++ G N L++ +C R ++
Sbjct: 459 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC---RSNK 515
Query: 303 LEEQLETLTKCNQ 315
+EE + + K +Q
Sbjct: 516 MEEASKVIVKMSQ 528
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 24/358 (6%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAM 128
+++ LI L + S P++A L +M+ N+ CL + Y +I K+ V A
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLR----RMM--NQGCLPDDFTYNTIIDGYCKISMVQEAT 310
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ +G PD + SLI GDV AL LF ++ KP+ Y++ + G
Sbjct: 311 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFN-EAQAKGIKPDIVVYNSLVKG 369
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G + + G ++QTY +I+G K + + + G +P
Sbjct: 370 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 429
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++G C R KLD ++ + G + ++ C+ G+V+E+ E +
Sbjct: 430 VFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ 489
Query: 309 --TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L C+ +P ++ +I + S+++++ + +M ++GL A +I
Sbjct: 490 EMILKGCHPNPIT----YNILIENFCRSNKMEEASKVIVKMSQEGL-HPDAVSFNTLIYG 544
Query: 367 YFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
+ R + L + + Y T++ L+ + SGKL+ + E F E +
Sbjct: 545 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF-----SGKLNMHMAEKIFDEML 597
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
K V E + +LKG Y LI + + A V M +G+ PD+ FN
Sbjct: 480 KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFN 539
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI +GD+ A LF+ + + Y + T++ I FS N+ K + ++
Sbjct: 540 TLIYGFCRNGDLEGAYLLFQ-KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLS 598
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY LI GS K + D EM+ G IPS+ +V+ L ++ +
Sbjct: 599 KGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQ 658
Query: 268 VKSFLKFLLGGG 279
+ ++ G
Sbjct: 659 AVGIIHIMVKIG 670
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 4/230 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+ + M A + PD +N+LI LC + + + ++ P+ TY+
Sbjct: 237 LPEAVRLVDGMRAYAV-PDVVTYNTLIRG-LCKKSMPQEAMHYLRRMMNQGCLPDDFTYN 294
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ + V + + GF + TY SLI+G D + + E +
Sbjct: 295 TIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK 354
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI P I + +++GLC + + + + G + ++ C++G + +
Sbjct: 355 GIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 414
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P+V F+ +I Y +LD V RM + G++
Sbjct: 415 TVVMNDAIMKGYLPDVFT--FNTLIDGYCKRLKLDSALQLVERMWEYGIA 462
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ + +++C G A LF+ M+ + + PN ++ + G+V
Sbjct: 151 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF-PNLAAFNKVLHALCKRGDVLEAGLLL 209
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
I G S+N+ TY I G +A R + M + +P + ++ GLC +
Sbjct: 210 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKK 268
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+L+ ++ G ++ ++ YC++ V E E L+
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 314
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M GI PD+ +NS++ +G V F+ M+ + PN TY+ I
Sbjct: 449 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH-PNPITYNILI 507
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F ++ +K G + ++ +LI+G + D + ++++ G
Sbjct: 508 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 567
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ + + + +L G + + + L+ C+ VD
Sbjct: 568 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMH 627
Query: 307 LETLTK 312
L + K
Sbjct: 628 LVEMIK 633
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + P+ A FN ++ A GDV+ A L V N TY+ +I
Sbjct: 170 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEA-GLLLGKVIQRGMSINLFTYNIWI 228
Query: 187 SGFSSLGN-------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
G G VD M + ++ TY +LI G K +
Sbjct: 229 RGLCEAGRLPEAVRLVDGMRAYAVPDVV--------TYNTLIRGLCKKSMPQEAMHYLRR 280
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
MM+ G +P +++G C + LK + G+ ++ L+ C G
Sbjct: 281 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 340
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+ E P+++++
Sbjct: 341 VERALELFNEAQAKGIKPDIVVY 363
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 4/193 (2%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+V A+ +F +A+GIKPD V+NSL+ G ++ AL + M + E P+ +TY
Sbjct: 341 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM-AEEGCHPDIQTY 399
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +GN+ I G+ +V T+ +LI G K DS + E M
Sbjct: 400 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 459
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P VL GLC K++ V + ++ G N L++ +C R ++
Sbjct: 460 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC---RSNK 516
Query: 303 LEEQLETLTKCNQ 315
+EE + + K +Q
Sbjct: 517 MEEASKVIVKMSQ 529
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 24/358 (6%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAM 128
+++ LI L + S P++A L +M+ N+ CL + Y +I K+ V A
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLR----RMM--NQGCLPDDFTYNTIIDGYCKISMVQEAT 311
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ +G PD + SLI GDV AL LF ++ KP+ Y++ + G
Sbjct: 312 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFN-EAQAKGIKPDIVVYNSLVKG 370
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G + + G ++QTY +I+G K + + + G +P
Sbjct: 371 LCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPD 430
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++G C R KLD ++ + G + ++ C+ G+V+E+ E +
Sbjct: 431 VFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ 490
Query: 309 --TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L C+ +P ++ +I + S+++++ + +M ++GL A +I
Sbjct: 491 EMILKGCHPNPIT----YNILIENFCRSNKMEEASKVIVKMSQEGL-HPDAVSFNTLIYG 545
Query: 367 YFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
+ R + L + + Y T++ L+ + SGKL+ + E F E +
Sbjct: 546 FCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF-----SGKLNMHMAEKIFDEML 598
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
K V E + +LKG Y LI + + A V M +G+ PD+ FN
Sbjct: 481 KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFN 540
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI +GD+ A LF+ + + Y + T++ I FS N+ K + ++
Sbjct: 541 TLIYGFCRNGDLEGAYLLFQ-KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLS 599
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY LI GS K + D EM+ G IPS+ +V+ L ++ +
Sbjct: 600 KGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQ 659
Query: 268 VKSFLKFLLGGG 279
+ ++ G
Sbjct: 660 AVGIIHIMVKIG 671
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 4/230 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+ + M A + PD +N+LI LC + + + ++ P+ TY+
Sbjct: 238 LPEAVRLVDGMRAYAV-PDVVTYNTLIRG-LCKKSMPQEAMHYLRRMMNQGCLPDDFTYN 295
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ + V + + GF + TY SLI+G D + + E +
Sbjct: 296 TIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAK 355
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI P I + +++GLC + + + + G + ++ C++G + +
Sbjct: 356 GIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDA 415
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P+V F+ +I Y +LD V RM + G++
Sbjct: 416 TVVMNDAIMKGYLPDVFT--FNTLIDGYCKRLKLDSALQLVERMWEYGIA 463
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ + +++C G A LF+ M+ + + PN ++ + G+V
Sbjct: 152 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVF-PNLAAFNKVLHALCKRGDVLEAGLLL 210
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
I G S+N+ TY I G +A R + M + +P + ++ GLC +
Sbjct: 211 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKK 269
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+L+ ++ G ++ ++ YC++ V E E L+
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 315
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M GI PD+ +NS++ +G V F+ M+ + PN TY+ I
Sbjct: 450 ALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH-PNPITYNILI 508
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F ++ +K G + ++ +LI+G + D + ++++ G
Sbjct: 509 ENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYS 568
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ + + + +L G + + + L+ C+ VD
Sbjct: 569 ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMH 628
Query: 307 LETLTK 312
L + K
Sbjct: 629 LVEMIK 634
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + P+ A FN ++ A GDV+ A L V N TY+ +I
Sbjct: 171 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEA-GLLLGKVIQRGMSINLFTYNIWI 229
Query: 187 SGFSSLGN-------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
G G VD M + ++ TY +LI G K +
Sbjct: 230 RGLCEAGRLPEAVRLVDGMRAYAVPDVV--------TYNTLIRGLCKKSMPQEAMHYLRR 281
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
MM+ G +P +++G C + LK + G+ ++ L+ C G
Sbjct: 282 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 341
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+ E P+++++
Sbjct: 342 VERALELFNEAQAKGIKPDIVVY 364
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 7/214 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M G P+ +N+L+ G + A +L+E M+ + Y P+ TY+ +
Sbjct: 69 AQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG-YSPDVVTYNTLL 127
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +G +D K + + GF +V TY +LI+G KA D R + M+S ++
Sbjct: 128 HGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLV 187
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC-ELGRVDELEE 305
P + ++ GLC ++D + ++ G+ N L+ C EL R++ +
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGLCRELRRLESARQ 244
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSDRL 337
LE + P+++ + G+ R +S+ L
Sbjct: 245 LLEKMVLNGCKPDIVSYNALIHGLAREQGVSEAL 278
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 8/234 (3%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S +A+I L + +A+++L K N + C +GK + AM F
Sbjct: 365 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK---AMTTF 421
Query: 132 TSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
M +G+KP +N L+ C G + A++LF+ M+ P+ TY A I G
Sbjct: 422 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDG 480
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G +D + A A G NV TY SLI G D + M+ G +P
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ LC + +D+ + L G M L+ C + RVDE
Sbjct: 541 TITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDE 594
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 9/307 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A + M ++ + PD +NSL+ +G V A +++
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEA----RMLI 213
Query: 171 SSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ + PN TY ISG L +++ + + G ++ +Y +LIHG + +
Sbjct: 214 VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQG 273
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + ++ G P +P +++GL +++ L+ G + +
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
+ C+ GRV++ L+ + + P+V+ H + +I R+D+ E + M
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH--NAVINGLCKEKRVDEAEVLLSGMEA 391
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
+G S +A +IC R + + + F + +K K TY+ LV G +A G
Sbjct: 392 KGCS-PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 450
Query: 409 KLDSVIN 415
++ I
Sbjct: 451 RIKEAIT 457
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 2/230 (0%)
Query: 94 EWRLDKMLKGNESCLDEYACLIA-LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
E R+ + KG + Y+ LI+ L +++ + A + M G KPD +N+LI
Sbjct: 208 EARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHG 267
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
V AL LF V + Y+P TY+ I G V+ + ++ + G
Sbjct: 268 LAREQGVSEALKLFG-SVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEP 326
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ TY I G KA + ++M G +P + V+ GLC +++D + L
Sbjct: 327 DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLL 386
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N L+ C G+ + + + K P V+ +
Sbjct: 387 SGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
S++ALI L L L + + +G E + Y LI K V A +F+
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSV--LRQGYEPEVPTYNILIDGLLKEDRVNEAFELFS 317
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+ G++PD+ + I +G V AL + + M + P+ +++A I+G
Sbjct: 318 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM-DEKGCVPDVVSHNAVINGLCKE 376
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
VD + A G S N ++ +LI G +A + ++EM+ G+ P++
Sbjct: 377 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436
Query: 253 EKVLEGLCARRKLDRVK 269
+++GLC R+ R+K
Sbjct: 437 NILVDGLCKARQEGRIK 453
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 39/206 (18%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A + + MEA+G P++ FN+LIC +G A++ F+ M+ KP
Sbjct: 375 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK-RGVKPTV 433
Query: 180 KTYDAFISGFSSL---GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
TY+ + G G + + A I G +V TY +LI G KA D R
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 493
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M + G IP++ ++ GLC
Sbjct: 494 LGAMEAKGCIPNVYTYNSLISGLCG----------------------------------- 518
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
L +VDE E + + P+ + +
Sbjct: 519 LDKVDEALELFVAMVEKGCVPDTITY 544
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 2/195 (1%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
MH + PD+ L+ + L SG + A E ++ + + T++ +IS
Sbjct: 1 MHTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLV--KGLCDISTFNIYIS 58
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G + + GF N TY +L+ G YE M+ G P
Sbjct: 59 GLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSP 118
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +L G C KLD + G+ + L+ +C+ ++DE + L
Sbjct: 119 DVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRIL 178
Query: 308 ETLTKCNQSPEVLLH 322
+ + + P+V+ +
Sbjct: 179 QRMVSESLVPDVVTY 193
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIIMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ S KV+N+P A F M ++G++PD +N+ ICA L GD A L E+M+
Sbjct: 457 YTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMM 516
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y P++ TY+ I G GN+ ++ G + TY LIH +
Sbjct: 517 LKGIY-PDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLL 575
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ M+S G+ PS+ ++ C R L + + +L G + NE L
Sbjct: 576 SEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL 635
Query: 291 VKCYCELGRV 300
+ C GR
Sbjct: 636 IHALCRTGRT 645
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+S F+++ LIT+L + L+ ++ +G L Y +I K + V A
Sbjct: 312 ASSFTYNPLITALLERGFVQKVEALQMEMEN--EGIMPTLVTYNAIIHGLLKSEQVEAAQ 369
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M A G+ PD +NS++ +G++ AL L + + P TY+ I G
Sbjct: 370 LKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAG-LAPTVLTYNTLIDG 428
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ LG ++ + + G +V TY L++GS K R+ F++EM+S G+ P
Sbjct: 429 YCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQP 487
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +GI P +N++I L S V A F M + P+ TY++ ++G+ G
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEM-RAMGLLPDLITYNSMLNGYCKAG 398
Query: 194 NV-DAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
N+ +A+ W ++ AG + V TY +LI G + + R EEM+ G P +
Sbjct: 399 NLKEAL--WLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCT 456
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ G R L + F +L G +
Sbjct: 457 YTILMNGSHKVRNLPMAREFFDEMLSKGLQ 486
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 4/192 (2%)
Query: 130 VFTSMEAQG--IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ ME QG + +N +I G + A L + M S+ K +S TY+ I+
Sbjct: 265 LLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK--KASSFTYNPLIT 322
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V + G + TY ++IHG LK+ ++ + EM ++G++P
Sbjct: 323 ALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLP 382
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +L G C L L L G L+ YC LG ++E
Sbjct: 383 DLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLK 442
Query: 308 ETLTKCNQSPEV 319
E + + P+V
Sbjct: 443 EEMVEQGCFPDV 454
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A + M + G++P + LI C G++ +A F M+
Sbjct: 562 YTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKML 621
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN TY+ I G + + G + N TY LI G+ + ++
Sbjct: 622 DVG-IEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNW 680
Query: 231 DSVDRFYEEMMSLGIIP 247
R Y EM GI P
Sbjct: 681 ADAIRLYFEMHQNGIPP 697
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 1/161 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
MLKG Y +I K N+ A + M + G++PD + LI A G +
Sbjct: 516 MLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLL 575
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A L MV S+ +P+ TY I GN+ + W+ + G N TY
Sbjct: 576 SEARKLLNGMV-SDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNV 634
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
LIH + + EM+ G+ P+ +++G C
Sbjct: 635 LIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNC 675
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 11/302 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + + S KA +V E +++++ G E + Y L + +
Sbjct: 76 LEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEEL--GVERTIKSYDALFKVISRRGRYMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+ F M +GI+P FN LI SG V TA FE M S E P+ TY+ I
Sbjct: 134 SKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDM-KSREITPDVITYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G++ + ++ K++ V TY +LI G D R EEM LGI
Sbjct: 193 NGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIK 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ +L GLC K+ +S LK ++ +N + +L+ C+ G +D +
Sbjct: 253 PNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAAD 312
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
L+ + + + E + +I Y + + D + ++ ++ + + + M +
Sbjct: 313 VLKAMIRLSVPTEA--GHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQSTLHMELS 370
Query: 366 SY 367
+Y
Sbjct: 371 AY 372
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTE 325
>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
Length = 690
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 3/251 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + +F+ +G+K D VF+S I + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A +++ M+ + PN TY I G G + Y + G ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + S YE+M+ +G P + I +++GL + + F +LG +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+N + L+ +C L R DE + + P+V F+ ++R+ + RL++
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEGRLEEAL 551
Query: 342 YSVGRMGKQGL 352
+ RM K GL
Sbjct: 552 FLFFRMFKMGL 562
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 1/171 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M GIKPD A F +++ + G + AL LF M +P++ Y I
Sbjct: 515 ALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG-LEPDALAYCTLI 573
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F + + S ++ +IH K + +F+ ++ +
Sbjct: 574 DAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKME 633
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
P I ++ G C+ R+LD + + L + N L+ C++
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKI 684
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 2/250 (0%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
++ALI L K E + + KG + Y+ LI + + A T
Sbjct: 249 YNALINGLCKEHDYKG--AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G P+ +SL+ C G AL L+ M+ +PN Y+ + GF S G
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ ++ G S N++TY SLI+G K D + +M++ G P++ +
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++E LC K +S ++ + + +K C+ GR+D E+ + +
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486
Query: 314 NQSPEVLLHF 323
++ P ++ +
Sbjct: 487 HRCPPNIVTY 496
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M+ G +P+ +N L+ A LC + V + +S++ P++ +Y IS
Sbjct: 168 VYRDMKRDGFEPNVFTYNVLLKA-LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G V +A F V Y +LI+G K D+ EM+ GI P++
Sbjct: 227 CEVGLVKE-----GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNV 281
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK-CYCELGRVDELE 304
++ LC +++ SFL +L G N LVK C+ D L+
Sbjct: 282 ISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALD 337
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 46/265 (17%)
Query: 57 TTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
TT D++D+ F + +++ L+ S + + ++++ G +
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI--GCSPNIR 388
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI K ++ A++++ M G P+ V+ +++ A A SL EIM
Sbjct: 389 TYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIM 448
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------AANIAA------------ 208
S E P+ T++AFI G G +D K + NI
Sbjct: 449 -SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKAN 507
Query: 209 ---------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
G + TY +L+HGS A + +MM G P +
Sbjct: 508 RIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMN 567
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGG 278
++ C + K +R L + G
Sbjct: 568 MIILAYCKQGKAERAAQMLDLVSCG 592
>gi|356503505|ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Glycine max]
Length = 442
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 156/342 (45%), Gaps = 13/342 (3%)
Query: 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
+S+P A V WR + N EY+ I +G+ NV A+ +F +GIK
Sbjct: 61 NSNPSLALQVFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKT- 119
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ +N+L+ A + +G SLF + P+ TY+ +S + L VD M +
Sbjct: 120 TGTYNALMGAFMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATF 179
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ ++N+ TY LI G + A +D +++ ++ + + P++ +L G
Sbjct: 180 SEIQRLNLAMNICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANS 239
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQ-KLVKC----YCELGRVDELEEQLETLTKCNQSP 317
L++++ F+ + + N+ + L++C YC D L +++E L K
Sbjct: 240 GNLEKMEEMYSFI-----RDHVNIKEISLIRCMICAYCRSSHADRL-KKIELLLKFIPQK 293
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
E +I+LYA D L +E ++ + G S + + +I +Y+RC A ++L+
Sbjct: 294 EYRPWLNVLLIKLYAKEDWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLE 353
Query: 378 LFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F+ + S + + R+ Y + Y ++ +V+ EM+
Sbjct: 354 NFVRRAEISGWSICRSLYHCKLVMYGSQMTLLEMHNVLEEME 395
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g31840
gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 840
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 16/289 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + +F+ +G+K D VF+S I + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A +++ M+ + PN TY I G G + Y + G ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + S YE+M+ +G P + I +++GL + + F +LG +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+N + L+ +C L R DE + + P+V F+ ++R+ + RL++
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEGRLEEAL 551
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR 390
+ RM K GL E + C+ +D F H+K + L+
Sbjct: 552 FLFFRMFKMGL-----EPDALAYCTL--------IDAFCKHMKPTIGLQ 587
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 3/238 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K + + +L +++ N+ D C +I L K + A F ++ ++PD
Sbjct: 578 KHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIV 637
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N++IC + A +FE++ + PN+ T I ++D + ++
Sbjct: 638 TYNTMICGYCSLRRLDEAERIFELL-KVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSI 696
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G N TY L+ K+ D + + +EEM GI PSI +++GLC R +
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+D + + + L++ YC++GR+ E E + + P+ LL
Sbjct: 757 VDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQ 814
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTE 325
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 119/267 (44%), Gaps = 19/267 (7%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI----ALSGK 120
F +N+ S++ALI SL K Q + W L +K E LI A SGK
Sbjct: 143 FMYNTE--SYNALIDSLG----KIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGK 196
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V+ AM+ F ME G+K +S FN L+ + S V++A ++F+ M + P+ K
Sbjct: 197 VKE---AMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKM-KIRRFVPDIK 252
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+Y + G+ N+ +++ Y GF +V TY LI+ K R +D + EM
Sbjct: 253 SYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREM 312
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
S PS I ++ GL + R+L F + G+ +V YC R+
Sbjct: 313 ESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRI 372
Query: 301 DELEEQLETLTKCNQSP-----EVLLH 322
D+ ++ + K P +++LH
Sbjct: 373 DDAYRMVDEMRKSGVGPNSRTYDIILH 399
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G+ P+S ++ ++ + + A S+FE M S EE +P TYD +
Sbjct: 375 AYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIV 434
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F ++ V++ K + A G + + LI+ D ++++EM+ +GI
Sbjct: 435 RMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIR 494
Query: 247 PSIPILEKVLEGLCARRKLDRV 268
P + + + L + D V
Sbjct: 495 PPAALFSHLKQALIEDGRKDTV 516
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 89/210 (42%), Gaps = 2/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI G V+ + A+ F +A G P++ +N+++ A S + A + + M
Sbjct: 324 FCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMR 383
Query: 171 SSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S PNS+TYD + + +A + + + V TY+ ++
Sbjct: 384 KSG-VGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDK 442
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+S + ++ M + G+ P + + ++ LC KLD + + +L G + +
Sbjct: 443 VESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSH 502
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L + E GR D + + + K ++P V
Sbjct: 503 LKQALIEDGRKDTVVLLAQKIDKLRKTPYV 532
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 4/232 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y L+ G+ +N+ V+ M+ +G +PD + LI A A+ LF
Sbjct: 251 IKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFR 310
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M S+ +P+ + I+G S+ + +++ + A+GF+ TY +++ +
Sbjct: 311 EM-ESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWS 369
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENM 286
D R +EM G+ P+ + +L L A + + F K + +
Sbjct: 370 MRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVST 429
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+V+ +C + +V+ + + + P +H FS +I ++LD
Sbjct: 430 YDIIVRMFCNMDKVESAIKVWDRMKAKGVHPG--MHMFSILINSLCHENKLD 479
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFXVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 140/330 (42%), Gaps = 7/330 (2%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
++TS+ + L L ++D + G S + A +I + V F V +
Sbjct: 80 ILTSIANMKHYSTVLSLSKQMDSL--GIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFK 137
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G +PD+A F +LI G + AL LF+ MV E ++PN TY I G +GN
Sbjct: 138 LGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG-EGFQPNGVTYGTLIHGLCKVGNSR 196
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A + + + NV TY ++I K R + + EM++ GI P++ ++
Sbjct: 197 AAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSII 256
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC + V + + ++ N + LV C+ G V + ++ + +
Sbjct: 257 HGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVE 316
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR- 375
P+V+ ++ ++ + L +D+ + M ++G + + +I Y + D+
Sbjct: 317 PDVVT--YTALMDGHCLRSEMDEADKVFDTMVRKGCA-PNVISYSTLINGYCKIQRIDKA 373
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ LF + + TY+ L+ G G
Sbjct: 374 MYLFEEMCQRELVPNIVTYNTLIHGLCHVG 403
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A V M +G++PD + +L+ ++ A +F+ MV + PN +Y
Sbjct: 300 VTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR-KGCAPNVISYS 358
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I+G+ + +D + N+ TY +LIHG + EM++
Sbjct: 359 TLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVAS 418
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G IP + +L+ LC R LD+ + LK + G + ++ C +G ++
Sbjct: 419 GQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAA 478
Query: 304 EEQLETLTKCNQSPEV 319
+ +L+ P+V
Sbjct: 479 GDLFSSLSSKGLHPDV 494
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y+ LI K+Q + AM++F M + + P+ +N+LI G +
Sbjct: 348 KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRD 407
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++LF MV+S + P+ TY + ++D A + + ++Q+Y +I
Sbjct: 408 AIALFHEMVASGQI-PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVI 466
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
G + + ++ + + S G+ P + ++ GLC
Sbjct: 467 DGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC 505
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M + GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C+ G +D + L+++ + + E
Sbjct: 289 TDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTE 325
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 15/222 (6%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
K E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++
Sbjct: 214 KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG-LCNAEKMS 272
Query: 162 -ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A S+ + MV ++ + IS GN+DA + I Y L
Sbjct: 273 EARSILKEMVDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTEAGHYGVL 332
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGII----------PSIPILEKVLEGLCARRKLDRVKS 270
I KA +D + ++++ II PS ++E LC + + ++
Sbjct: 333 IENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPS--AYNPIVEYLCNNGQTSKAEA 390
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ L+ G + + L++ + + G D E L+ + +
Sbjct: 391 LVRQLMKLGVQ-DPTALNTLIRGHSQEGSPDSAFELLKIMLR 431
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 8/297 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K+ + A +VF M G KP+ +N++I G + +A+ + + M
Sbjct: 256 YTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMT 312
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E+ P++ TY I G+ G ++ K+ ++ NV TY ++I+G +
Sbjct: 313 ETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNV 372
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R M G+ ++ +L+GLC KLD LK ++G G + + +
Sbjct: 373 DEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVV 432
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V YC++G+ D+ L+ + +P V F+ + R+ S + D + +M +
Sbjct: 433 VNEYCKIGKADDAISLLKEMKSRGINPSV--SSFNAVFRILVESGKTDKAGLILRQMKQL 490
Query: 351 GLS--FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G + F S V +C + ++ + D + + L + Y +LV GY G
Sbjct: 491 GCTPNFLSYSTVIDGLCKA-KGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDG 546
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV A + T M G+K + A S++ G + A + MV + ++K Y
Sbjct: 371 NVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLG-MEADAKAY 429
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++ + +G D + G + +V ++ ++ +++ D +M
Sbjct: 430 GVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQ 489
Query: 243 LGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LG P+ V++GLC A+ ++ V+ F+ + G ++ +M LVK YCE G D
Sbjct: 490 LGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNAD 549
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 91/210 (43%), Gaps = 10/210 (4%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+++ + + ++ A ++F+ +V KP+ TY I G+ +G ++ A N
Sbjct: 220 YNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIEN-----AKN 274
Query: 206 I--AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCAR 262
+ G N+ TY ++I+G K +S + ++M +P +++G C R
Sbjct: 275 VFDEMGCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKR 334
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L+ +++ ++ + N ++ C G VDE + + + V H
Sbjct: 335 GELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATH 394
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ I++ + +LDD + M G+
Sbjct: 395 --TSILKGLCVVGKLDDAARHLKEMVGLGM 422
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 2/172 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E+ Y ++ K+ A+ + M+++GI P + FN++ + SG A
Sbjct: 421 GMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKA 480
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ M PN +Y I G + G + + ++ G ++ Y L+
Sbjct: 481 GLILRQM-KQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLV 539
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
G + + D R + EM+ +G + ++ ++GL A+ K V+ F +
Sbjct: 540 KGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFE 591
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 9/253 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + L S KA +V E +++++ G E Y L + +
Sbjct: 76 LEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEEL--GVERTTKSYDTLFKVILRRGRFMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M ++GI+P FN +I SG V TA F+ M S E P+ TY+ I
Sbjct: 134 AKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDM-KSREISPDVITYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +D K++ V TY +LI G + D R EEM GI
Sbjct: 193 NGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIK 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ +L GLC K+ +S LK ++ +N + +L+ C+ G +D +
Sbjct: 253 PNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAAD 312
Query: 306 QLETLTKCNQSPE 318
L+ + + + E
Sbjct: 313 VLKAMIRLSVPTE 325
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG-LCNAEKMSEAR 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + ISG GN+DA A I Y LI
Sbjct: 276 SVLKEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII----------PSIPILEKVLEGLCARRKLDRVKSFLK 273
KA D + ++++ II PS ++E LC + + ++ ++
Sbjct: 336 FCKADQHDKAVKLLDKLIEKDIILRPQSTLHMEPS--AYNPMIEYLCNNGQTAKAEALVR 393
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
LL G + + LV+ + + G D E L+ + +
Sbjct: 394 QLLKLGVQ-DPTALNTLVRGHSQEGSPDSAFELLKIMLR 431
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNPDAAADVLKAMIRLSVPTE 325
>gi|334184981|ref|NP_850482.3| pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
gi|75268024|sp|Q9ZU88.1|PP204_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g48000
gi|4249407|gb|AAD13704.1| hypothetical protein [Arabidopsis thaliana]
gi|330255828|gb|AEC10922.1| pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
Length = 481
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 161/342 (47%), Gaps = 17/342 (4%)
Query: 86 PKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
P +QLV +WR +K L G DEYA I +SG+++NV A+ +F + ++
Sbjct: 94 PVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLF----HESANKTTS 149
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEE----YKPNSKTYDAFISGFSSLGNVDAMNK 200
V+N+L+ A LC+G LF S ++ P+ TY+ IS + L V+ M
Sbjct: 150 VYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMES 209
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + TY +LI G + A D+D ++ + M + + P++ +L G
Sbjct: 210 VFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYA 269
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY---CELGRVDELEEQLETLTKCNQSP 317
L R++ + + + + + ++ Y C R+ +++ + + K + P
Sbjct: 270 NSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKP 329
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
+ L ++++YA D L +E + + +GL ++ + ++ SYFRC A D+L
Sbjct: 330 WLYLL----LMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLA 385
Query: 378 LFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F+ + +K+ R+ + L+ Y ++++V++EM+
Sbjct: 386 KFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEME 427
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM VF M+A G PD V+ +++ +G A +L ++ E ++PN Y+A I
Sbjct: 161 AMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMA-EGFEPNVVVYNALI 219
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ ++G+++ + G S NV+TY LI G K+R D + M+ G++
Sbjct: 220 DGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLV 279
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C+ +LD L+ + G NE L+ C+ RV E +
Sbjct: 280 PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLL 339
Query: 307 LETLTK 312
L +L +
Sbjct: 340 LGSLIQ 345
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 3/193 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G +P+ V+N+LI GD+ A+ +FE M PN +TY ISGF +
Sbjct: 205 AEGFEPNVVVYNALIDGYCNVGDLELAVDVFERM-DVNGCSPNVRTYTELISGFCKSRKL 263
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D ++ + AG NV TY +LI G D R + M + G++P+ +
Sbjct: 264 DRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVL 323
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++ LC ++ + L L+ G K+NE + L+ C+ GR + ++TL
Sbjct: 324 IDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGF 383
Query: 316 SPEVLLHFFSGII 328
P+ H +S +I
Sbjct: 384 VPDA--HTYSSLI 394
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 101/252 (40%), Gaps = 5/252 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G + + +L+ +G V A+S+F M ++ P+ Y +
Sbjct: 126 ACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGM-QADGCAPDPHVYATMV 184
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + +A GF NV Y +LI G D + +E M G
Sbjct: 185 HGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCS 244
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++ G C RKLDR ++ G N L++ C G++D
Sbjct: 245 PNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRL 304
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--I 364
L+++ P S +I +R+ + + +G + ++G+ ++ +
Sbjct: 305 LQSMENSGLVPNEWT--CSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGL 362
Query: 365 CSYFRCAAYDRL 376
C R AA DRL
Sbjct: 363 CKAGRFAAADRL 374
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 104/295 (35%), Gaps = 71/295 (24%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D M +G E + Y LI V ++ A+ VF M+ G P+ + LI S
Sbjct: 202 DAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSR 261
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM--------------NKW-- 201
+ A+ LF MV + PN TY A I G S G +D N+W
Sbjct: 262 KLDRAMMLFSRMVDAG-LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTC 320
Query: 202 -------------------YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I G VN Y SLI G KA F + DR + ++S
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380
Query: 243 LGIIPSIPILEKVLEGLCARRKL-----------------------------------DR 267
G +P +++GLC +++L D
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K L ++ G K + V+ YC GR+++ E + + P ++ +
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTY 495
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 32/291 (10%)
Query: 46 RLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN 104
RL+Q VSQ F ++ +LI L + +A LVL+ D M KG
Sbjct: 373 RLMQTLVSQ-----------GFVPDAHTYSSLIDGLCRQKELSEAMLVLD---DMMEKGV 418
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
+ Y +I + + + M A GIKPD + + + G + A
Sbjct: 419 QPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEH 478
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ MV PN TY+A I G+++LG + +A G N ++Y L+
Sbjct: 479 MMLHMVD-HGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537
Query: 225 LKARDFDSVDR----------------FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+K +++ EEM+ L + I I L LC +LD
Sbjct: 538 IKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEA 597
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
K L + +E++ ++ C C L + E ++++ K P++
Sbjct: 598 KILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQL 648
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 3/222 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEA 136
T+L QL +RL + ++ + +E+ C + + K + V A + S+
Sbjct: 286 TALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQ 345
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+GIK + V+ SLI +G A L + +V S+ + P++ TY + I G +
Sbjct: 346 KGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLV-SQGFVPDAHTYSSLIDGLCRQKELS 404
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ G + TY +I ++ D + ++M++ GI P + +
Sbjct: 405 EAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFV 464
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
C +++ + + ++ G N L+ Y LG
Sbjct: 465 RSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 10/227 (4%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +TY I+ + G++ A + ++ + AGF+ + Y S + G +A R +
Sbjct: 71 NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLF 130
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M G + + +L GLC + S + G + ++ +V C
Sbjct: 131 VLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGA 190
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG---RMGKQGLSF 354
GR E E L P V++ ++ +I Y + D+E +V RM G S
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVV--YNALIDGYC---NVGDLELAVDVFERMDVNGCSP 245
Query: 355 KSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAG 400
E+ I + + DR + LF + TY L+ G
Sbjct: 246 NVRTYTEL-ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQG 291
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 93 LEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
L L++M+K S +D Y C + +V + A + M++ + P V+ S+I
Sbjct: 562 LHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSII- 620
Query: 152 ACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
AC C ++T AL+ + MV S Y P ++Y IS G++ + + ++ +
Sbjct: 621 ACCCRLKMLTEALTFVDSMVKS-GYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEY 679
Query: 211 SVNVQTYESLIHGSLK 226
+ + LI G L+
Sbjct: 680 NYEEIAWRILIDGLLQ 695
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D + G E +DE I L+G +V + A V + G+ P +N L+ A
Sbjct: 313 DGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQ 372
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GDV A+ E M +PN T++ IS F G VD W + G S V+
Sbjct: 373 EGDVKKAILTTEQM-EERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVE 431
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI+G + F F +EM GI P++ ++ LC RKL + L +
Sbjct: 432 TYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADM 491
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
+G G N + L++ C L ++ +
Sbjct: 492 IGRGVSPNAEIYNMLIEASCSLSKLKD 518
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 6/240 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+++ +++ LI L ++ KKA+ + L KG + Y LI+ K N
Sbjct: 530 GIDATLVTYNTLINGLGRNGRVKKAE---DLFLQMAGKGCNPDVITYNSLISGYAKSVNT 586
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ ++ M+ GIKP F+ LI AC G VVT +F+ M+ + P+ Y+
Sbjct: 587 QKCLELYDKMKILGIKPTVGTFHPLIYACRKEG-VVTMDKMFQEMLQMD-LVPDQFVYNE 644
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I ++ GNV + + G + TY SLI L+ R + ++M + G
Sbjct: 645 MIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKG 704
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++P + +++GLC + + + + ++ G +N +M +L+ E G + E +
Sbjct: 705 LVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQ 764
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 11/260 (4%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M K G + + Y LI K + + A V M +G+ P++ ++N LI A
Sbjct: 453 LDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCS 512
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ A F+ M+ S TY+ I+G G V + G + +V
Sbjct: 513 LSKLKDAFRFFDEMIQSG-IDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVI 571
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G K+ + Y++M LGI P++ ++ C + + + + +
Sbjct: 572 TYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYA-CRKEGVVTMDKMFQEM 630
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
L ++ + +++ Y E G V + L +Q+ +Q + ++ +I Y
Sbjct: 631 LQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQM-----VDQGVDCDKVTYNSLILAYL 685
Query: 333 LSDRLDDVEYSVGRMGKQGL 352
R+ ++++ V M +GL
Sbjct: 686 RDRRVSEIKHLVDDMKAKGL 705
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 111/262 (42%), Gaps = 6/262 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD +D + S+ +LI L + A++VL D + +G + Y LI
Sbjct: 453 LDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLA---DMIGRGVSPNAEIYNMLIEA 509
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
S + + A F M GI +N+LI +G V A LF + ++ + P
Sbjct: 510 SCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLF-LQMAGKGCNP 568
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY++ ISG++ N + Y G V T+ LI+ + + ++D+ +
Sbjct: 569 DVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIY-ACRKEGVVTMDKMF 627
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM+ + ++P + +++ + + S + ++ G ++ L+ Y
Sbjct: 628 QEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRD 687
Query: 298 GRVDELEEQLETLTKCNQSPEV 319
RV E++ ++ + P+V
Sbjct: 688 RRVSEIKHLVDDMKAKGLVPKV 709
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 29/219 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+ VF + G +PD+ + + A + D+ L + MV + P+ Y+ +
Sbjct: 141 TLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVK-DGMGPSVFAYNLVL 199
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + K + I N TY +LI G K + F E M +
Sbjct: 200 GGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVE 259
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW-------------------------- 280
++ +L GLC ++D + L + G G+
Sbjct: 260 CNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGK 319
Query: 281 --KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+I+E L+ C +GR+++ EE L L + +P
Sbjct: 320 EIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTP 358
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 1/197 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++++M G P + N L+ + S L++F ++ S +P++ Y +
Sbjct: 106 ATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGT-RPDAVAYGKAV 164
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
L ++D + + + G +V Y ++ G K R + ++EM+ ++
Sbjct: 165 QAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMV 224
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++G C ++ F + + + N L+ C GRVD+ E
Sbjct: 225 PNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREV 284
Query: 307 LETLTKCNQSPEVLLHF 323
L + P L F
Sbjct: 285 LLEMEGSGFLPGGFLSF 301
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 1/164 (0%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
W + KG ++ Y LI G+ + M+ GIKP+ + SLI CL
Sbjct: 417 WVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLI-NCL 475
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
C + + + PN++ Y+ I SL + +++ I +G +
Sbjct: 476 CKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATL 535
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
TY +LI+G + + + +M G P + ++ G
Sbjct: 536 VTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISG 579
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTE 325
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 5/280 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD +N +I A G AL L +M+ + KP+ T+ I F GNV+
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENG-CKPSIATFCTIIDAFCKEGNVELAR 347
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
K++ G S N Y +I G +KARD + +EEM + I+P ++ G
Sbjct: 348 KYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGH 407
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
K + L+ L G + ++ V C GR DE + LE L + P V
Sbjct: 408 YRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSV 467
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
+ F+ II Y + + Y+ G M K GL+ S+ ++I S R + D +
Sbjct: 468 VA--FNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLI-SLVRKGSLDEAWIA 524
Query: 380 L-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
L D I + + + L+ GY R G +S+ NEMK
Sbjct: 525 LYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMK 564
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF+ M +G P++ V+NSLI G + AL L M + P+ T + I
Sbjct: 591 AYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREM-NKRGLLPDIFTVNMII 649
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + + G S ++ TY +LI G KA D D +M G
Sbjct: 650 CGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWE 709
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
P + + G C RK++R L+ L+ G N ++ C +
Sbjct: 710 PDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNV 760
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 5/196 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++ +GI P FNS+I A +G A + IMV P+S T + +
Sbjct: 451 AMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKF-GLTPSSSTCSSLL 509
Query: 187 SGFSSLGNVDAMNKWYAAN--IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
G++D W A I GF V + L+ G + + + + EM G
Sbjct: 510 ISLVRKGSLD--EAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRG 567
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P + GLC + +L G+ N + L+ +C++G+++E
Sbjct: 568 VFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEAL 627
Query: 305 EQLETLTKCNQSPEVL 320
+ + + K P++
Sbjct: 628 KLVREMNKRGLLPDIF 643
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 1/154 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + + +I K NV A F +E G+ ++ V+N +I + + D+ A
Sbjct: 322 GCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQA 381
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LFE M +++ P+ T++ ++G G + N+ +G + + +
Sbjct: 382 NLLFEEM-RTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVA 440
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
G A +D + E ++ GI PS+ ++
Sbjct: 441 GLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSII 474
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+++G + Y+ L+ K + V A +F M G PD +F LI +G V
Sbjct: 107 VMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKV 166
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A F+ M +PN Y+ + G S G ++ N +A + S +V TY +
Sbjct: 167 KDASERFKQM-PKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNT 225
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+ KAR + + +E M + G +P++ ++ GLC +L++ +L G
Sbjct: 226 LLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG 285
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
K N+ L+ C +V + E E +T+ P+ + ++ +I Y +D+
Sbjct: 286 CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVA--YNSLIAGYCKRGSMDE 343
Query: 340 VE 341
E
Sbjct: 344 AE 345
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M A G PD FN ++ S ++ A +++ MV S YKP++ +Y I G
Sbjct: 32 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG-YKPDNVSYHILIHGL 90
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +G +D K + + G + ++Q Y SL+ KAR D ++EM+ G P
Sbjct: 91 AKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDR 150
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ +++ GLC K+ K + G + N + L+ C G++++
Sbjct: 151 LMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAE 210
Query: 310 LTKCNQSPEVLLH 322
+ + SP+V+ +
Sbjct: 211 MKSHSCSPDVVTY 223
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ + + V A +F M I PD+ +NSLI G + A L+ M
Sbjct: 293 YTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P T++ I GF LG + N+ A G + + TY LI G +A
Sbjct: 353 GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKL 412
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D Y++M + + GLC +D+ + + G N + L
Sbjct: 413 DEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRIL 472
Query: 291 VKCYCELGRVDELEEQLE 308
+ +LGRV++ ++ +E
Sbjct: 473 SESLIKLGRVEDAQKLME 490
>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 840
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A +F MEA G++PD +++LI G+V A+ L+E M S+ PNS
Sbjct: 433 KSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNR-IIPNS 491
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A + G G + ++ I + S+++ Y +I G +K + + Y++
Sbjct: 492 LIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQ 551
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+ GI P+I ++ G C RKL + + L + G + N L+ YCE G
Sbjct: 552 LGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGN 611
Query: 300 VDELEEQLETL 310
+ L E L +
Sbjct: 612 MQSLLELLSEM 622
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +G P+ + LIC G+V AL L++ M+S ++ + + +
Sbjct: 370 AWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMIS-HGFQLSIISSTVLL 428
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
VD K + A G ++ TY +LIHG K + YE+M S II
Sbjct: 429 GSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRII 488
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ I +L GLC + K+ + + + +L+ ++ + ++ Y + G E +
Sbjct: 489 PNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKL 548
Query: 307 LETLTKCNQSPEVL 320
+ L + SP ++
Sbjct: 549 YKQLGEKGISPTIV 562
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ V A F M G+ PD+ +N LI +G + AL L M + +P+
Sbjct: 293 KLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDM-ENHGLEPDM 351
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ GF LG ++ + G + N+ TY LI G + + + + Y+E
Sbjct: 352 VTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKE 411
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G SI +L LC R++D + G + + L+ C+ G
Sbjct: 412 MISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGE 471
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V + E + P L+H
Sbjct: 472 VQQAILLYEKMCSNRIIPNSLIH 494
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +++ G++P++ + +L+ G++ + L L M ++ P TY I
Sbjct: 580 ARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEM-KAKAIGPTHITYTVVI 638
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + A G + + +Y ++I KARD + Y++M+ +
Sbjct: 639 KGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLE 698
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+ ++ G C L + L L +N+ ++K +C G VD+
Sbjct: 699 PTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDK 754
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ ++ G P S +S++ LC LF +E++P+ +++ +S +
Sbjct: 233 VYNEIKVSG-TPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRY 291
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
LG VD ++ + G + +Y LIHG A +M + G+ P +
Sbjct: 292 CKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDM 351
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK-----------LVKCYCELG 298
+ +G R L L+ G W I + M K L+ +C++G
Sbjct: 352 VTYNILAKGF---RLLG--------LINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIG 400
Query: 299 RVDE 302
V+E
Sbjct: 401 NVEE 404
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 3/232 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ +V FA+ V M GI+PD+ FN+LI G + A+ LF MV S ++PN
Sbjct: 143 RLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS-GHEPNV 201
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y+ I+G GN + + NV TY ++I K R + F E
Sbjct: 202 ISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSE 261
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI P + +L G C+ +L+ K ++G + LV C+ G
Sbjct: 262 MVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGM 321
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
V E ET+T+ P + ++ ++ Y L +++D+ +G M +G
Sbjct: 322 VSEARCVSETMTEKGAEPNA--YTYNALMDGYCLHNQMDEAIKVLGIMIGKG 371
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 1/220 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G+E + Y +I K N A+ VF ME KP+ +N++I + LC +V
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS-LCKDRLVNE 254
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
F + P+ TY+ + GF SLG ++ + + + + T+ L+
Sbjct: 255 AVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVD 314
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K E M G P+ +++G C ++D L ++G G
Sbjct: 315 GLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAP 374
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
N + L+ YC+ R++E + L +++ N +P+ + +
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTY 414
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + + PD+ FN L+ G V A + E M + + +PN+ TY+A +
Sbjct: 290 ATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETM-TEKGAEPNAYTYNALM 348
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ +D K I G + N+ +Y LI+G K++ + R EM +
Sbjct: 349 DGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLT 408
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +++GLC + + K + G + L+ +C+ G +DE +
Sbjct: 409 PDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKL 468
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L+ + + P ++L ++ +IR ++ +L+ + ++ G+
Sbjct: 469 LKEMHERRIKPNIIL--YTILIRGMFIAGKLEVAKELFSKLSADGI 512
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG L Y LI K + + A + + M + + PD+ +++L+ G
Sbjct: 370 KGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPRE 429
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL+LF+ M SS P+ Y + GF G++D K N+ Y LI
Sbjct: 430 ALNLFKEMCSS-GLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILI 488
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
G A + + ++ + GI P I +++GL D F + + G+
Sbjct: 489 RGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF 547
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 1/179 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M +G P+ + +N LI S + A L M S + P++ TY +
Sbjct: 360 AIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM-SEKNLTPDTVTYSTLM 418
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + ++G ++ Y L+ G K D + +EM I
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+I + ++ G+ KL+ K L G + + ++K + G DE E
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 120/280 (42%), Gaps = 5/280 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD +N +I A G AL L +M+ + KP+ T+ I F GNV+
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENG-CKPSIATFCTIIDAFCKEGNVELAR 378
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
K++ G S N Y +I G +KARD + +EEM + I+P ++ G
Sbjct: 379 KYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGH 438
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
K + L+ L G + ++ V C GR DE + LE L P V
Sbjct: 439 YRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSV 498
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
+ F+ II Y + + Y+ G M K GL+ S+ ++I S R + D +
Sbjct: 499 VA--FNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLI-SLVRKGSLDEAWIA 555
Query: 380 L-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
L D I + + + L+ GY R G +S+ NEMK
Sbjct: 556 LYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMK 595
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF+ M +G P++ V+NSLI G + AL L M + P+ T + I
Sbjct: 622 AYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREM-NKRGLLPDIFTVNMII 680
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + + G S ++ TY +LI G KA D D +M G
Sbjct: 681 CGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWE 740
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
P + + G C RK++R L+ L+ G N ++ C +
Sbjct: 741 PDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNV 791
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 5/196 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++ +GI P FNS+I A +G A + IMV P+S T + +
Sbjct: 482 AMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKF-GLTPSSSTCSSLL 540
Query: 187 SGFSSLGNVDAMNKWYAAN--IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
G++D W A I GF V + L+ G + + + + EM G
Sbjct: 541 ISLVRKGSLD--EAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRG 598
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P + GLC + +L G+ N + L+ +C++G+++E
Sbjct: 599 VFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEAL 658
Query: 305 EQLETLTKCNQSPEVL 320
+ + + K P++
Sbjct: 659 KLVREMNKRGLLPDIF 674
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K NV A F +E G+ ++ V+N +I + + D+ A LFE M +++ P+
Sbjct: 370 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEM-RTKDIVPDG 428
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++G G + N+ +G + + + G A +D + E
Sbjct: 429 ITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLEN 488
Query: 240 MMSLGIIPSIPILEKVL 256
++ GI PS+ ++
Sbjct: 489 LLGKGIPPSVVAFNSII 505
>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 777
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 3/231 (1%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 208 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 265
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 266 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 324
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 325 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 384
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 385 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAY 435
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 393 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 449
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C + V A +F+ M + E P+S T+ + I+ ++
Sbjct: 450 EMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 509
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 510 GRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 564
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 31/285 (10%)
Query: 82 QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
Q+ PK+A +EW +KM G E A +I G+ NV A+ ++ + +
Sbjct: 297 QNGVPKRA---VEW-FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWR 352
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
D+ F++LI SG+ L+++E M + KPN Y+ I S+G A
Sbjct: 353 IDAVTFSTLIRIYGVSGNYDGCLNIYEEM-KALGVKPNLVIYNRLID---SMGR--AKRP 406
Query: 201 W-----YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
W Y I GF+ N TY +L+ +AR D Y EM G+ ++ IL
Sbjct: 407 WQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTV-ILYNT 465
Query: 256 LEGLCA-RRKLDRVKSFLKFLLG------GGWKINENMAQKLVKCYCELGRVDELEEQLE 308
L +CA R +D + + W + L+ Y GRV + E L
Sbjct: 466 LLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFS-----SLITVYACSGRVSKAEAALL 520
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + P + + + +I+ Y + ++DDV + ++ + G++
Sbjct: 521 QIREAGFEPTLFV--LTSVIQCYGKAKQVDDVVRTFDQVLELGIT 563
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 135/315 (42%), Gaps = 19/315 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
LKG E ++ LI + V A+ ++ + + D+ ++LI +
Sbjct: 109 LKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIG 168
Query: 161 TALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
A LF+ M E+ +KP+ TY A I GF GN++ K NV TY
Sbjct: 169 EAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 228
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
SL+HG KA D D + M S G +P++ ++ GLCA K+D + + +
Sbjct: 229 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 288
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ L+ YC LGR++E ++ + + + P+ + ++ ++R + + RL+
Sbjct: 289 CCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRIT--YTCLVRGFCNASRLE 346
Query: 339 DVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDH-------IKGSYKLR 390
+ + + M K+A ++ + +Y A Y R F++ I +
Sbjct: 347 EARFLLENM-------KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 399
Query: 391 RATYDFLVAGYRRAG 405
TY L+ G +AG
Sbjct: 400 AVTYSSLIDGLCKAG 414
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y+ LI K V AM V +++ KPD + +++ LC D AL+L E M
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTY-TIVIEGLCGTDRTEEALTLLEEM 457
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V+ + +P+ T+++ I LG++D K A A G + TY +L+ G +
Sbjct: 458 VN-KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516
Query: 230 FDSVDRFYEEMM--------SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ +E M + ++P ++ GLC R++D+ + ++ L +
Sbjct: 517 MEIAYELFEVMRRKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECE 575
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK 312
E +V GR +E + + +++K
Sbjct: 576 PAEEDCLAIVDGLLRAGRTEEAGKLINSISK 606
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A + M A D+ +N+L+ G + A LF+ M
Sbjct: 262 YTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEM- 320
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI--AAGFSVNVQTYESLIHGSLKAR 228
+++ P+ TY + GF + ++ ++ N+ AAG +V TY ++ G +A+
Sbjct: 321 AAKSCLPDRITYTCLVRGFCNASRLEEA-RFLLENMKTAAGIDPDVVTYSIVVAGYSRAK 379
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
F F +EM++ + P+ +++GLC +++ LK
Sbjct: 380 RFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLK 424
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 8/214 (3%)
Query: 139 IKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
+ P+ +N ++ LC + + A + + M + P+ TY I+GF G +D
Sbjct: 5 VAPNERTYNVVVNG-LCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDR 63
Query: 198 MNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + +V TY S++ G + D EM G+ P ++
Sbjct: 64 ACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 123
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC---ELGRVDELEEQLETLTKC 313
G C RK+D K +L +++ + L+ C +G EL +++E
Sbjct: 124 TGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDG 183
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
P+V+ ++ +I + S L+ +G M
Sbjct: 184 AWKPDVVT--YTALIDGFCKSGNLEKAMKMLGVM 215
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 8/185 (4%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ + A +F M A+ PD + L+ + + A L E M ++ P+
Sbjct: 306 RLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ++G+S ++ IA + N TY SLI G KA R
Sbjct: 366 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA------GRVNHA 419
Query: 240 MMSLGII--PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M L + P + V+EGLC + + + L+ ++ + + ++ C L
Sbjct: 420 MEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRL 479
Query: 298 GRVDE 302
G +DE
Sbjct: 480 GDMDE 484
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 13/307 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K A + M +G+ PD+ FNS++ +G A SL +M
Sbjct: 13 YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM- 71
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY+ ISG NVD +++GF +V TY L G K
Sbjct: 72 AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI 131
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +EM G P++ +++GLC K ++ L+ L+ G+ + +
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTII 191
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMG 348
V C+ GR+D+ + +E + K +P V+ + G+ R + R+D+ + M
Sbjct: 192 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR----TGRVDEAHHIFKEMV 247
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
+ + + V +V Y + + +D I+G+ + Y+ L+ GY + G
Sbjct: 248 SKDCTADALAYVSLVN-GYCKSSRTKEAQKVVDGIRGTPYID--VYNALMDGYCK---EG 301
Query: 409 KLDSVIN 415
+LD + N
Sbjct: 302 RLDEIPN 308
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 15/336 (4%)
Query: 91 LVLEWRLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
L E RLDK LK E L Y L+ + V A H+F M ++ D
Sbjct: 195 LCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTAD 254
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ + SL+ S A + +V P Y+A + G+ G +D + +
Sbjct: 255 ALAYVSLVNGYCKSSRTKEA----QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVF 310
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
G N++TY ++ G K D F E M S G +P + +++GL
Sbjct: 311 EDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKA 370
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K + L ++ G + L+ +C+ R D+ L+ + K P+ +
Sbjct: 371 SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT- 429
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDH 382
++ +I + ++RL D + M + G + +I + + L +DH
Sbjct: 430 -YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDH 488
Query: 383 IKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ G + TY+ + + G + S+++EM
Sbjct: 489 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 524
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 3/220 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + + PD +N LI + A + MV P++ T+++ + G G
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVD-RGVTPDTVTFNSIMDGLCKAG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + A + TY +LI G K ++ D +E +S G +P +
Sbjct: 60 KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+ +GLC R ++D +K + G G N L+ C+ + ++ E LETL
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P+V+ + I+ RLD V M K+G +
Sbjct: 180 GFVPDVVTYTI--IVDGLCKEGRLDKALKMVEGMLKRGCT 217
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 117/253 (46%), Gaps = 6/253 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+ +E + C++ +V + A+ + M QG+ P++ N +I G V
Sbjct: 129 RNSEKACEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEY 188
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LFE M +P+S +Y + + +GN+ +KW + + GF V+ T+ +LI
Sbjct: 189 AELLFEEMCV-RGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATF-TLI 246
Query: 222 HGSLKARDFDSVDRFY-EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ + + +Y ++ +G+ P++ ++EGLC R + + L+ ++G GW
Sbjct: 247 ISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGW 306
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDRLDD 339
K N L+ C+ G ++ L + N P VL ++ +I Y D+L+
Sbjct: 307 KPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLT--YTAMISGYCREDKLNR 364
Query: 340 VEYSVGRMGKQGL 352
E + RM +QGL
Sbjct: 365 AEMLLSRMKEQGL 377
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 4/276 (1%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W +++ G E L + C+I K ++ A + M +G KP+ SLI
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V SE +KPN TY A ISG+ ++ + G N
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPN 380
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY +LI G KA +F+ M S G P++ ++ GLC R ++ L+
Sbjct: 381 TNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLE 440
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
G K ++ L+ +C+ + + + K P++ H ++ +I ++
Sbjct: 441 DGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDI--HSYTTLIAVFCR 498
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+R+ + E + G+ + + +IC Y R
Sbjct: 499 ENRMKESEMFFEEAVRIGI-IPTNKTYTSMICGYCR 533
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 17/235 (7%)
Query: 17 LLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA---FNSSQFS 73
LL ++ L+ NTNT +T + + D +++ + F+ + +
Sbjct: 368 LLSRMKEQGLVPNTNTYTTLIDG---------HCKAGNFERAYDLMNLMSSEGFSPNLCT 418
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++A++ L + ++A +LE LK ++ Y L++ K +N+ A+ +F
Sbjct: 419 YNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKF---TYNILMSEHCKQENIRQALALFN 475
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M GI+PD + +LI A C + + +F P +KTY + I G+
Sbjct: 476 KMLKIGIQPDIHSYTTLI-AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCRE 534
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GN+ K++ G + + TY ++I G K D Y+ M+ G++P
Sbjct: 535 GNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVP 589
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 1/194 (0%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
+ Y LI K N A + M ++G P+ +N+++ G V A + E
Sbjct: 382 NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED 441
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
+ KP+ TY+ +S N+ + + G ++ +Y +LI +
Sbjct: 442 GFQNG-LKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCREN 500
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ F+EE + +GIIP+ ++ G C L F L G +
Sbjct: 501 RMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYG 560
Query: 289 KLVKCYCELGRVDE 302
++ C+ + DE
Sbjct: 561 AIISGLCKQSKRDE 574
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+KPD +N L+ ++ AL+LF M+ +P+ +Y I+ F +
Sbjct: 445 NGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIG-IQPDIHSYTTLIAVFCRENRMK 503
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++ + G +TY S+I G + + +F+ + G P ++
Sbjct: 504 ESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAII 563
Query: 257 EGLCARRKLDRVKSFLKFLLGGG 279
GLC + K D +S ++ G
Sbjct: 564 SGLCKQSKRDEARSLYDSMIEKG 586
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCXSGNLDAAADVLKAMXRLSVPTE 325
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 9/253 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + L S KA +V E +++++ G E + Y L + +
Sbjct: 76 LEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEEL--GVERTIKSYDALFKVILRRGRYMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M ++GI+P FN +I SG V TA FE M S E P+ TY+ I
Sbjct: 134 AKRYFNKMLSEGIEPTRHTFNFMIWGFFLSGKVDTANRFFEXM-KSREIMPDVITYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + ++ ++ V TY +LI G + D R EEM GI
Sbjct: 193 NGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEEMKGFGIN 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ +L GLC K+ +S LK ++ +N + +L+ C++G +D +
Sbjct: 253 PNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPKDNSIFLRLISGQCKVGNLDAAAD 312
Query: 306 QLETLTKCNQSPE 318
L+ + + + E
Sbjct: 313 VLKVMIRLSVPTE 325
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V + A+ + M+ GI P++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVVTYTTLIKGYVSVDRIDDALRLVEEMKGFGINPNAITYSTLLPG-LCNAEKMSEAQ 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + ISG +GN+DA I Y LI
Sbjct: 276 SILKEMVDKYIAPKDNSIFLRLISGQCKVGNLDAAADVLKVMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII 246
KA +D +F ++++ II
Sbjct: 336 CCKAGQYDRAVKFLDKVIEKDII 358
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTE 325
>gi|356570536|ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Glycine max]
Length = 504
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 24/309 (7%)
Query: 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
+S+P A V WR + N EY+ I +G+ NV A+ +F +GIK
Sbjct: 124 NSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTT 183
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
S +N+L+ AC+ +G SLF + P+ TY+ +S F L VD M +
Sbjct: 184 S-TYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSVFGRLMLVDHMEATF 242
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
F++N+ TY +I G + A +D ++ ++ + + P++ +L G
Sbjct: 243 REIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPNMKTYMLMLRGYANS 302
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCY-CELGRVDELEEQLETLTKCNQSPEVLL 321
L++++ F+ I E L++C C R + ++L+ + E+LL
Sbjct: 303 GNLEKMEEIYSFITDRV-DIKE---ISLIRCMICAYSRSSD-ADRLKKI-------ELLL 350
Query: 322 HFFSG----------IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
F G +I+LYA D L+ +E ++ + G S + + ++ +Y+R
Sbjct: 351 KFIPGKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHGTSITTKGILRCIVATYYRYN 410
Query: 372 AYDRLDLFL 380
A ++L+ F+
Sbjct: 411 AVEKLENFV 419
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 4/210 (1%)
Query: 94 EWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
E R+ K G + CL Y L+ S V ++ A F M ++G++PD +N+ I
Sbjct: 398 EARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRI 457
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
CA L GD+ AL L E+++ E ++ TY+ I G GN+ + ++ G
Sbjct: 458 CAELILGDIARALELREVLML-EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL 516
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+ TY LIH + + + M+S G++PS ++ C R L
Sbjct: 517 QPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYG 576
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + +L G + NE L+ C +GR
Sbjct: 577 WFRKMLEEGVEPNEITYNVLIHALCRMGRT 606
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+S +++ LI L ++ + K A+ E ++ + G + Y CLI + +
Sbjct: 480 GISSDTVTYNILIHGLCKTGNLKDAK---ELQMKMVSNGLQPDCITYTCLIHAHCERGLL 536
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F +M + G+ P + F +I A G++ +A F M+ E +PN TY+
Sbjct: 537 REARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLE-EGVEPNEITYNV 595
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I +G + + + G N TY LI G+ K +++ RFY EM G
Sbjct: 596 LIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNG 655
Query: 245 IIPSIPILEKVLEG 258
I P + +++G
Sbjct: 656 IHPDYLTHKALVKG 669
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN--VPF 126
+S F+++ LIT L + K V + +L+ +G + Y +I G +Q+ V
Sbjct: 273 ASSFTYNPLITGLLARGCVKK--VYDLQLEMENEGIMPTVVTYNAMI--HGLLQSGLVEA 328
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M A G+ PD +NSL+ +G++ AL LF + + P TY+ I
Sbjct: 329 AQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRA-GLAPTVLTYNIRI 387
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ LG+++ G NV TY L+ GSL F++EM+S G+
Sbjct: 388 DGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQ 447
Query: 247 P 247
P
Sbjct: 448 P 448
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 1/168 (0%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
LE R ML+G S Y LI K N+ A + M + G++PD + LI A
Sbjct: 470 LELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHA 529
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G + A +F M+S + P++ T+ I + GN+ + W+ + G
Sbjct: 530 HCERGLLREARKIFNNMIS-DGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEP 588
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
N TY LIH + + EM+ G++ + +++G C
Sbjct: 589 NEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNC 636
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K S +N LI L G V L ++ + +E P TY+A I G G V+A
Sbjct: 272 KASSFTYNPLITGLLARGCVKKVYDL-QLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQ 330
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+A A G +V TY SL++G KA + + ++ G+ P++ ++G
Sbjct: 331 VKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGY 390
Query: 260 CARRKLDRVK 269
C L+ +
Sbjct: 391 CRLGDLEEAR 400
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 92/228 (40%), Gaps = 14/228 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
V M GI+P +N+L+ + L G D V A+ L E+ PN TY+ I+
Sbjct: 191 VHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKV-AMLLKEMETRGSGCLPNDVTYNVVIT 249
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQ----TYESLIHGSLKARDFDSVDRFYEEMMSL 243
G + G+++ AA + G ++ + TY LI G L V EM +
Sbjct: 250 GLTRKGDLEE-----AAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENE 304
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI+P++ ++ GL ++ + + G + L+ YC+ G + E
Sbjct: 305 GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEA 364
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L + +P VL + I Y L++ MG+QG
Sbjct: 365 LLLFGDLRRAGLAPTVLTYNIR--IDGYCRLGDLEEARILKEEMGEQG 410
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + F M ++GI+P FN +I SG V TA
Sbjct: 102 GVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 161
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+ FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 162 IRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 220
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM G P+ +L GLC K+ + LK ++
Sbjct: 221 GYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 280
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 281 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 317
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME G++ +N+L L
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M+S E +P T++ I GF G V+ N+++ + S +V T
Sbjct: 129 GRYMMAKRYFNKMLS-EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++I+G + + + ++++ EM I P++ +++G + ++D ++ +
Sbjct: 188 YNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G G K N L+ C ++ E
Sbjct: 248 GSGIKPNAITYSTLLPGLCNAEKMSE 273
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 23/306 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GKV ++ +F M+ G PD +N LI C C FE M
Sbjct: 268 YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLI-NCYCK---------FEKMP 317
Query: 171 SSEEY---------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ EY KPN TY I F G + K G N TY SLI
Sbjct: 318 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ KA + + +M+ G+ +I +L+GLC ++ + + +L G
Sbjct: 378 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 437
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N+ + LV Y + R+++ + L+ +T+CN P+++L + II + +L++ +
Sbjct: 438 PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL--YGSIIWGHCSQRKLEETK 495
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+ M +G+S +I +YF+ + D L+ F + + TY L+ G
Sbjct: 496 LILEEMKSRGISANPVISTT-IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDG 554
Query: 401 YRRAGL 406
AG+
Sbjct: 555 LCEAGI 560
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 1/172 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F+ M P + N L+ SG+ F M+ + P+ TY+ I
Sbjct: 179 ANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG-IAPSVFTYNVMI 237
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+++ + + G S +V TY SLI G K + V + EM +G +
Sbjct: 238 DYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCV 297
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P I ++ C K+ R + + G K N L+ +C+ G
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEG 349
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 1/164 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E+ + Y LI + V A+ F M + G++P+ AV+ SLI + + +A
Sbjct: 540 GVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESA 599
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LF+ M P+ + A I G GN+ + ++ Y SL+
Sbjct: 600 KKLFDEM-QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVS 658
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + + +F+ EM+ GI+P + +L R +LD
Sbjct: 659 GFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLD 702
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 3/226 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M+++GI + + ++I A +G AL+ F+ M + TY I G
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEM-QDVGVEATIVTYCVLIDGL 555
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G V+ ++ ++ G NV Y SLI G +S + ++EM G+ P I
Sbjct: 556 CEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDI 615
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G L + + + + ++ LV + + G + + +
Sbjct: 616 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 675
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+ + PE +L ++R Y +LD+ M + SF+
Sbjct: 676 MIEKGILPEEVLCI--CLLREYYKRGQLDEAIELKNEMERMAYSFE 719
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 2/241 (0%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +++ + + S GN + K++ I AG + +V TY +I K D ++ R
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M +G+ P + +++G L+ V S + G + L+ CYC+
Sbjct: 253 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 312
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
++ E + P V+ +S +I + + + M + GL
Sbjct: 313 FEKMPRAFEYFSEMKNNGLKPNVVT--YSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNE 370
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
++ + + L D ++ KL TY L+ G +AG + + V
Sbjct: 371 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 430
Query: 417 M 417
M
Sbjct: 431 M 431
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 5/251 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE--WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAM 128
WD + L S KA +V E KM + G E + Y L + + A
Sbjct: 76 LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAK 135
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M ++GI+P FN ++ SG V TA FE M S E P+ TY+ ++G
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDM-KSREIMPDVVTYNTMVNG 194
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + ++ K++ V TY +LI G + D RF EEM G+ P+
Sbjct: 195 YCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPN 254
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQL 307
+L GLC K+ +S LK ++ +N + +L+ C+ G +D L
Sbjct: 255 AITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVL 314
Query: 308 ETLTKCNQSPE 318
+ + + + E
Sbjct: 315 KAMIRLSVPTE 325
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V V A+ M+ G+KP++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPG-LCNAEKMSEAR 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + ISG G++DA A I Y LI
Sbjct: 276 SILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII 246
KA ++D + ++++ II
Sbjct: 336 YCKAGEYDKAIKLLDKVIEKDII 358
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 10/245 (4%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ ++ V A+ + M QG+ P + N ++ G V A +LF+ M +
Sbjct: 137 CMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCA- 195
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+PN +Y + G+ LGNV ++W I GF V+ T SLI + F
Sbjct: 196 RGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATL-SLIVREFCEKGF-- 252
Query: 233 VDR---FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
V R ++ +G+ P++ ++EGLC R + + L+ ++G GWK N
Sbjct: 253 VTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTA 312
Query: 290 LVKCYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C+ G ++ L + N P VL ++ +I Y ++++ E + RM
Sbjct: 313 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLT--YTAMISGYCRDEKMNRAEMLLSRMK 370
Query: 349 KQGLS 353
+QGL+
Sbjct: 371 EQGLA 375
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 3/262 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L + C+I K +V A + M +G KP+ +LI G A LF
Sbjct: 272 LINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFL 331
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+V SE +KPN TY A ISG+ ++ + G + N TY +LI G KA
Sbjct: 332 KLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKA 391
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+F+ M G P++ +++GLC + ++ LK G ++
Sbjct: 392 GNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTY 451
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L+ +C+ + + + K P++ H ++ +I ++ R+ + E
Sbjct: 452 TILISEHCKQAEIKQALVLFNKMVKSGIQPDI--HSYTTLIAVFCREKRMKESEMFFEEA 509
Query: 348 GKQGLSFKSAEDVEMVICSYFR 369
+ GL + M IC Y R
Sbjct: 510 VRFGLVPTNKTYTSM-ICGYCR 530
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ + + + A + + M+ QG+ P++ + +LI +G+ A L +M
Sbjct: 346 YTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVM- 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E + PN TY+A + G G V K + G + TY LI K +
Sbjct: 405 NEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEI 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M+ GI P I ++ C +++ + F + + G +
Sbjct: 465 KQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSM 524
Query: 291 VKCYCELG 298
+ YC G
Sbjct: 525 ICGYCREG 532
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K + A+ +F M GI+PD + +LI A C + +F
Sbjct: 451 YTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLI-AVFCREKRMKESEMFFEEA 509
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P +KTY + I G+ GN+ K++ G + + TY +LI G K
Sbjct: 510 VRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKL 569
Query: 231 DSVDRFYEEMMSLGIIP 247
D Y+ M+ G+ P
Sbjct: 570 DEARCLYDAMIEKGLTP 586
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 9/231 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNV 124
++ + ++ LI+ + K LVL +KM+K G + + Y LIA+ + + +
Sbjct: 443 GLDADKVTYTILISEHCKQAEIKQALVL---FNKMVKSGIQPDIHSYTTLIAVFCREKRM 499
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ F G+ P + + S+IC G++ AL F M S +S TY A
Sbjct: 500 KESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRM-SDHGCASDSITYGA 558
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
ISG +D Y A I G + T +L + K D S E +
Sbjct: 559 LISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKL 618
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVKCY 294
+ ++ L + LC+ RK+ F LL +N +A + CY
Sbjct: 619 WVRTVNTL---VRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTACY 666
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 4/179 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+VQ A V S G+ D + LI ++ AL LF MV S +P+
Sbjct: 427 GRVQE---AYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSG-IQPD 482
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+Y I+ F + ++ + G +TY S+I G + + +F+
Sbjct: 483 IHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFH 542
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M G ++ GLC + KLD + ++ G E L YC++
Sbjct: 543 RMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKI 601
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P F LI SG V TA
Sbjct: 110 GVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + + K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLITSQCKSGNLDAASDVLKAMIRLSVPTE 325
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 5/284 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
++ A+ +F +A+ +KPD V+NSL+ G ++ AL + MV E P+ TY
Sbjct: 365 DIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE-EGCHPDIWTY 423
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +GN+ I G+ +V T+ +LI G K DS + E M +
Sbjct: 424 NIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWT 483
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P + VL GLC K V + ++ G + N L++ +C++ +++E
Sbjct: 484 YGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEE 543
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ + + P+ + F+ +I + + LD ++ ++G S +A+ +
Sbjct: 544 ASGVIVRMCQDGLVPDAV--SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS-ATADTFNI 600
Query: 363 VICSYFRCAAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+I +Y + +F + I YK TY LV G +A
Sbjct: 601 LIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAA 644
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 1/192 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ V E + +LKG Y LI K+ + A V M G+ PD+ FN
Sbjct: 505 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFN 564
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI +GD+ A LF+ + + Y + T++ I +SS N+ K + I+
Sbjct: 565 TLIHGFCRNGDLDGAYLLFQ-KLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 623
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G+ ++ TY L+ G KA + D EM+S G +PS+ ++L L ++
Sbjct: 624 KGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSE 683
Query: 268 VKSFLKFLLGGG 279
+ + ++ G
Sbjct: 684 AVAIIHIMVRMG 695
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 4/203 (1%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK + V F M +G +P++ +N LI C + + S + + + P
Sbjct: 503 AGKAKEV---NETFEEMILKGCRPNAITYNILI-ENFCKINQLEEASGVIVRMCQDGLVP 558
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ +++ I GF G++D + G+S T+ LI + ++ +
Sbjct: 559 DAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIF 618
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM+S G P + +++GLC +DR + L ++ G+ + +++
Sbjct: 619 GEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMN 678
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
RV E + + + PEV+
Sbjct: 679 HRVSEAVAIIHIMVRMGVVPEVV 701
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/225 (17%), Positives = 92/225 (40%), Gaps = 4/225 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F M+ P + +N+++ A + + A ++ M+++ P+++T+ +
Sbjct: 90 AVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAG-VAPDARTHTVRL 148
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + + G Y +++ G + ++EM+ +
Sbjct: 149 KSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVF 208
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + VL LC + + + L +L G N+ ++ CE GR++E
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+E + +P+V+ ++ ++R ++ + +GRM QG
Sbjct: 269 VERMG-AYVAPDVVT--YNTLMRGLCKDSKVQEAAQYLGRMMNQG 310
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 86/215 (40%), Gaps = 3/215 (1%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ PD +N+L+ LC V + + + ++ P+ TY+ I G+ G +
Sbjct: 276 VAPDVVTYNTLMRG-LCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEA 334
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + GF + TY SLI+G D + + E + + P + + +++G
Sbjct: 335 TELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKG 394
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC + + + ++ G + ++ C++G + + + P+
Sbjct: 395 LCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPD 454
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
V F+ +I Y +LD V RM G++
Sbjct: 455 VFT--FNTLIDGYCKRLKLDSALQLVERMWTYGIA 487
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 4/210 (1%)
Query: 94 EWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
E R+ K G + CL Y L+ S V+++ A F M ++G++PD +N+ I
Sbjct: 1313 EARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRI 1372
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
CA L GD+ A L E+++ E ++ TY+ I G GN+ + ++ G
Sbjct: 1373 CAELILGDIARAFELREVLML-EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGL 1431
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+ TY LIH + + + M+S G++PS ++ C R L
Sbjct: 1432 QPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYG 1491
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + +L G + NE L+ C +GR
Sbjct: 1492 WFRKMLEEGVEPNEITYNVLIHALCRMGRT 1521
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A +F +M + G+ P + F +I A G++ +A F M+
Sbjct: 1438 YTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKML 1497
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN TY+ I +G + + + G N TY LI G+ K ++
Sbjct: 1498 E-EGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNW 1556
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ RFY EM GI P + +L+G
Sbjct: 1557 EDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 7/181 (3%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN--VPF 126
+S F+++ LIT L + K V + +L+ +G + Y +I G +Q+ V
Sbjct: 1188 ASSFTYNPLITGLLARGCVKK--VYDLQLEMENEGIMPTVVTYNAMI--HGLLQSGLVEA 1243
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M A G+ PD +NSL+ +G++ AL LF + + P TY+ I
Sbjct: 1244 AQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRA-GLAPTVLTYNILI 1302
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ LG+++ G NV TY L+ GSL R F++EM+S G+
Sbjct: 1303 DGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQ 1362
Query: 247 P 247
P
Sbjct: 1363 P 1363
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 10/196 (5%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +GI P +N++I L SG V A F M + P+ TY++ ++G+ G
Sbjct: 1216 MENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEM-RAMGLLPDVITYNSLLNGYCKAG 1274
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ + AG + V TY LI G + D + EEM G +P++
Sbjct: 1275 NLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYT 1334
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGG-----WKINENMAQKLVKCYCELGRVDELEE--Q 306
+++G R L + F +L G + N + +L+ ++ R EL E
Sbjct: 1335 ILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELI--LGDIARAFELREVLM 1392
Query: 307 LETLTKCNQSPEVLLH 322
LE ++ + +L+H
Sbjct: 1393 LEGISSDTVTYNILIH 1408
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
ML+G S Y LI K N+ A + M + G++PD + LI A G +
Sbjct: 1392 MLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLL 1451
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A +F M+S + P++ T+ I + GN+ + W+ + G N TY
Sbjct: 1452 REARKIFNNMIS-DGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 1510
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
LIH + + EM+ G++ + +++G C
Sbjct: 1511 LIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNC 1551
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K S +N LI L G V L ++ + +E P TY+A I G G V+A
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDL-QLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQ 1245
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+A A G +V TY SL++G KA + + ++ G+ P++ +++G
Sbjct: 1246 VKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGY 1305
Query: 260 CARRKLDRVK 269
C L+ +
Sbjct: 1306 CRLGDLEEAR 1315
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 14/228 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
V M GI+P +N+L+ + L G D V A+ L E+ PN TY+ I+
Sbjct: 1106 VHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKV-AMLLKEMETRGSGCLPNDVTYNVVIT 1164
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQ----TYESLIHGSLKARDFDSVDRFYEEMMSL 243
G + G+++ AA + G ++ + TY LI G L V EM +
Sbjct: 1165 GLTRKGDLEE-----AAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENE 1219
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI+P++ ++ GL ++ + + G + L+ YC+ G + E
Sbjct: 1220 GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEA 1279
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L + +P VL ++ +I Y L++ MG+QG
Sbjct: 1280 LLLFGDLRRAGLAPTVLT--YNILIDGYCRLGDLEEARILKEEMGEQG 1325
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V T
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETX 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 2/215 (0%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 112 ERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANR 171
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI G
Sbjct: 172 FFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ D R ZEM GI P+ +L GLC K+ + LK ++ +
Sbjct: 231 VSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTD 290
Query: 285 N-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
N + +L+ +C+ G +D + L+ + + + E
Sbjct: 291 NSIFMRLIXSHCKSGNLDAAADVLKAMIRLSVPTE 325
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME ++ +N+L L
Sbjct: 69 LDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKVILRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M+S E +P T++ I GF G V+ N+++ + S +V T
Sbjct: 129 GRYMMAKRYFNKMLS-EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++I+G + + + ++++ EM I P++ +++G + ++D ++ +
Sbjct: 188 YNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G G K N L+ C ++ E
Sbjct: 248 GXGIKPNAITYSTLLPGLCNAEKMSE 273
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+ V ++F M ++G+KPD + +LI +G++V A SL MV
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY A I G G +D N+ G +NV Y S+++G KA +
Sbjct: 461 QMG-MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +EM GI P V++ C +D+ L+ +L G + L
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL 579
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C LG +++ + L + + P+ + ++ +++ + + + ++ RM Q
Sbjct: 580 MNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT--YNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 351 GLS 353
G++
Sbjct: 638 GVA 640
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 3/256 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D +KG + Y +I L K+ A V M +Q I PD+ V+ +LI G
Sbjct: 318 DMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLG 377
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V TA F+ M+S ++ P+ TY I GF G V + I+ G + TY
Sbjct: 378 HVRTANKWFDEMLS-KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI KA + + + EM+ +G+ P+I +++GLC +LD L +
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G ++N + +V C+ G +++ + ++ + P+ + ++ +I Y +
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT--YTTVIDAYCRLGDI 554
Query: 338 DDVEYSVGRMGKQGLS 353
D + M +GL
Sbjct: 555 DKAHKLLQEMLDRGLQ 570
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A + M +G++ + ++NS++ +G++ A+ L + M
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM- 529
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TY I + LG++D +K + G V T+ L++G
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ DR M+ GI+P +++ C R ++ K + G + N L
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649
Query: 291 VKCYCELGRVDE 302
+K +C+ + E
Sbjct: 650 IKGHCKARNLKE 661
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 36/195 (18%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + ME GI PD+ + ++I A GD+ A L + M+ +P
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLD-RGLQPTV 573
Query: 180 KTYDAFISGFSSLG-----------------------------------NVDAMNKWYAA 204
T++ ++GF LG +++ K Y
Sbjct: 574 VTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR 633
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G + + TY LI G KAR+ Y+EM+ G +P++ +++ +RK
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRK 693
Query: 265 LDRVKSFLKFLLGGG 279
+ + + G G
Sbjct: 694 FXEARELFEEMRGHG 708
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 148/356 (41%), Gaps = 11/356 (3%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVP 125
N F + + T+L S K + +E++L +K + D Y +I + V
Sbjct: 350 NQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVV 409
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F+ M ++G+KPD + +LI +G++ A SL MV + PN TY A
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVE-KGLTPNVVTYTAL 468
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G G VD N+ G NV TY +LI+G K + + + EEM G
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF 528
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P +++ C ++ + L+ +L G + L+ +C G +++ E
Sbjct: 529 FPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGER 588
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
++ + P F+ +++ Y + + + M QG+ ++I
Sbjct: 589 LIKWMLDKGIMPNATT--FNSLMKQYCIRNNMRATIEIYKGMHAQGV-VPDTNTYNILIK 645
Query: 366 SYFRCAAYDRLDLFLDH---IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ C A + + + H ++ + L A+Y+ L+ G+ + + + EM+
Sbjct: 646 GH--CKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMR 699
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 1/219 (0%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+GN + Y+ ++ +V+ + + + ++ +G+KP+ +NS+I +G VV
Sbjct: 280 FRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVV 339
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A + +M + + P++ Y ISGF GNV K + + TY S+
Sbjct: 340 EAEQVLRVMKNQRIF-PDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSM 398
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
IHG +A + + EM+S G+ P +++G C ++ S ++ G
Sbjct: 399 IHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGL 458
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
N LV C+ G VD E L +++ P V
Sbjct: 459 TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNV 497
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 4/224 (1%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
K LK N+ Y +I+ K V A V M+ Q I PD+ V+ +LI SG+
Sbjct: 316 KGLKPNQYT---YNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGN 372
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V LF+ M ++ P+ TY + I G G V K ++ ++ G + TY
Sbjct: 373 VSVEYKLFDEM-KRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYT 431
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+LI G KA + + +M+ G+ P++ +++GLC ++D L +
Sbjct: 432 ALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEK 491
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G + N L+ C++G +++ + +E + P+ + +
Sbjct: 492 GLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITY 535
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 36 SVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVL 93
+V + N LI+ L +V + Q ++ +D+ F ++ ++ + + KA +L
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELL 555
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
LDK L+ + +SG +++ + M +GI P++ FNSL+
Sbjct: 556 RIMLDKGLQPTIVTFNVLMNGFCMSGMLED---GERLIKWMLDKGIMPNATTFNSLMKQY 612
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
++ + +++ M ++ P++ TY+ I G N+ + + GFS+
Sbjct: 613 CIRNNMRATIEIYKGM-HAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLT 671
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+Y SLI G K + F+ + +EEM + G I
Sbjct: 672 AASYNSLIKGFYKRKKFEEARKLFEEMRTHGFI 704
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 7/244 (2%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ALI L K + L + +M+ KG + Y+ LI + A +
Sbjct: 248 YNALINGLCKERDYKGGVEL---MSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLA 304
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G P+ +SL+ C G AL ++ M+ +PN Y+ + GF S
Sbjct: 305 QMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSH 364
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
GN+D + G S N++TY SLI+G K + + +M++ G P++ +
Sbjct: 365 GNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVY 424
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE---QLET 309
++E LC K +S ++ + + +K C+ GR+D E+ Q+E
Sbjct: 425 TSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ 484
Query: 310 LTKC 313
+C
Sbjct: 485 QYRC 488
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 129/332 (38%), Gaps = 39/332 (11%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
E + Y LI K ++ + + + M +GI P+ +++LI SG + A S
Sbjct: 242 EPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFS 301
Query: 165 LFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
L M+ + PN T + + G F DA++ W G NV Y +L+ G
Sbjct: 302 LLAQMLKRGCH-PNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQG 360
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ D + M +G P+I ++ G R L+ +L G N
Sbjct: 361 FCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPN 420
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
+ +V+ C + E E +E ++K N +P V F+ I+ + RLD E
Sbjct: 421 VVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSV--PTFNAFIKGLCDAGRLDWAEKV 478
Query: 344 VGRMGKQGLSFKSAEDVEMVICSYFRC----AAYDRLDLFL---DHIKGSYKLRR----- 391
+M +Q +RC Y+ L L + I+ +Y L R
Sbjct: 479 FRQMEQQ-----------------YRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMR 521
Query: 392 ------ATYDFLVAGYRRAGLSGKLDSVINEM 417
+TY+ L+ G AGL G ++ +M
Sbjct: 522 GVEWSTSTYNTLLHGSCNAGLPGIALQLVGKM 553
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M+ G +P+ +N L+ A LC + V + +S++ PN+ +Y IS
Sbjct: 167 VYRDMKRDGFEPNVFTYNVLLKA-LCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSM 225
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G V +A F V Y +LI+G K RD+ EM+ GI P++
Sbjct: 226 CEVGMVKE-----GRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNV 280
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK-CYCELGRVDELEEQLE 308
++ L +++ S L +L G N + LVK C+ D L+ +
Sbjct: 281 ISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQ 340
Query: 309 TLTKCNQSPEVLLH 322
+ P V+ +
Sbjct: 341 MIRGFGLQPNVVAY 354
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 52/145 (35%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + P FN+ I +G + A +F M PN TY+ + G +
Sbjct: 447 MSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKAN 506
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ G + TY +L+HGS A + +MM G P +
Sbjct: 507 RIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMN 566
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGG 278
++ C + K +R L + G
Sbjct: 567 MIILAYCKQGKAERAVQMLDLVSCG 591
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 154/361 (42%), Gaps = 9/361 (2%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119
D+V F Q + LI L +A L L R+D L + Y+ +I
Sbjct: 151 DNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVM--YSTIIDGMC 208
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K ++V A +++ M ++GI P+ +++LI G + A+ LF M+ E KP+
Sbjct: 209 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMIL-ENIKPDV 267
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ + GF G + +A + G NV TY SL+ G ++ +
Sbjct: 268 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYT 327
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G+ P I +++G C +K+D + K + + L+ C+LG+
Sbjct: 328 MSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGK 387
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+ + ++ + P+++ +S I+ + ++D + ++ QG+
Sbjct: 388 ISYALKLVDEMHDRGVPPDIIT--YSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445
Query: 360 VEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ +C R D ++F D + Y + TY ++ G+ GL + +++++M
Sbjct: 446 TILIDGLCKGGRLE--DAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKM 503
Query: 418 K 418
K
Sbjct: 504 K 504
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 24/280 (8%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA------FNSSQFSWDALITSL-QSSSP 86
S +V + + LIS V Q+K D++D+F ++++ L+ +
Sbjct: 229 SPNVVTYSALISGFFTV--GQLK---DAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 283
Query: 87 KKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
K+ + V + + +K N S +D Y CL+ K +++ + +M +G+ PD
Sbjct: 284 KEGKTVFAMMMKQGIKPNVVTYCSLMDGY-CLVKEVNKAKSILY------TMSQRGVNPD 336
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+N LI V A++LF+ M + P+ TY++ I G LG + K
Sbjct: 337 IQSYNILIDGFCKIKKVDEAMNLFKEM-HHKHIIPDVVTYNSLIDGLCKLGKISYALKLV 395
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
G ++ TY S++ K D ++ GI P++ +++GLC
Sbjct: 396 DEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKG 455
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L+ + + LL G+ I N ++ +C G DE
Sbjct: 456 GRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDE 495
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 43/335 (12%)
Query: 18 LMPLRFD--RLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTL----DSVDIFAFNS-- 69
+P +F + L NT+ N SSS ++ +P S I TT D VD F+ S
Sbjct: 13 FVPKKFHSFQFLKNTHFNFIPYSSS-----KINFIPYSSISTTFHNNNDVVDAFSLFSRL 67
Query: 70 -------SQFSWDALITSLQSSSPKKAQLVLEWRLD--------------KMLKGNESCL 108
++ ++ SL S L L +++ L G
Sbjct: 68 LRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNT 127
Query: 109 DEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
+ LI L G++ A+ ++ A G + D + +LI G+ AL L
Sbjct: 128 ITFTTLIKGLCLKGQIHQ---ALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
V +PN Y I G +V+ Y+ ++ G S NV TY +LI G
Sbjct: 185 LR-RVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 243
Query: 226 KARDF-DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
D++D F +M+ I P + +++G C K+ K+ ++ G K N
Sbjct: 244 TVGQLKDAIDLF-NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNV 302
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ YC + V++ + L T+++ +P++
Sbjct: 303 VTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDI 337
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + +A+ + M +G+ PD ++S++ A + V A++L +
Sbjct: 375 YNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLT-KL 433
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY I G G ++ + + + G+++ V TY +IHG F
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLF 493
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
D +M IP E ++ L + + D+ + + + G
Sbjct: 494 DEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLREMITRG 541
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/241 (17%), Positives = 96/241 (39%), Gaps = 17/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL---------------FEIMVS 171
A +F+ + Q P + FN ++ + + S T LSL F+
Sbjct: 60 AFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQ 119
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
Y PN+ T+ I G G + ++ +A GF ++ Y +LIHG K +
Sbjct: 120 LMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETR 179
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ + + P++ + +++G+C + ++ ++ G N L+
Sbjct: 180 AALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 239
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ +G++ + + + N P+V + F+ ++ + ++ + + M KQG
Sbjct: 240 SGFFTVGQLKDAIDLFNKMILENIKPDV--YTFNILVDGFCKDGKMKEGKTVFAMMMKQG 297
Query: 352 L 352
+
Sbjct: 298 I 298
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+ V ++F M ++G+KPD + +LI +G++V A SL MV
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY A I G G +D N+ G +NV Y S+++G KA +
Sbjct: 461 QMG-MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNI 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +EM GI P V++ C +D+ L+ +L G + L
Sbjct: 520 EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL 579
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C LG +++ + L + + P+ + ++ +++ + + + ++ RM Q
Sbjct: 580 MNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT--YNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 351 GLS 353
G++
Sbjct: 638 GVA 640
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 3/256 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D +KG + Y +I L K+ A V M +Q I PD+ V+ +LI G
Sbjct: 318 DMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLG 377
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V TA F+ M+S ++ P+ TY I GF G V + I+ G + TY
Sbjct: 378 HVRTANKWFDEMLS-KKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTY 436
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI KA + + + EM+ +G+ P+I +++GLC +LD L +
Sbjct: 437 TTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRK 496
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G ++N + +V C+ G +++ + ++ + P+ + ++ +I Y +
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT--YTTVIDAYCRLGDI 554
Query: 338 DDVEYSVGRMGKQGLS 353
D + M +GL
Sbjct: 555 DKAHKLLQEMLDRGLQ 570
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 1/191 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + ME GI PD+ + ++I A GD+ A L + M+ +P
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLD-RGLQPTV 573
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF LG ++ ++ + G + TY +L+ ++ + Y+
Sbjct: 574 VTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR 633
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + G+ P +++G C R L K ++ G+ L+K + + +
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKK 693
Query: 300 VDELEEQLETL 310
+ E E E +
Sbjct: 694 ILEARELFEEM 704
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A + M +G++ + ++NS++ +G++ A+ L + M
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM- 529
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TY I + LG++D +K + G V T+ L++G
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ DR M+ GI+P +++ C R ++ K + G + N L
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649
Query: 291 VKCYCELGRVDE 302
+K +C+ + E
Sbjct: 650 IKGHCKARNLKE 661
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY+ I
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF +D + + G N TY +LIHG +ARD D+ +++M+S G+
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + +++ C+ G+V++ +
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
+L+ P+V+++ SG R
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCR 552
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 124/302 (41%), Gaps = 23/302 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++FT ME +G++P+ ++SLI +CLC+ + + S + + PN T++A I
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLI-SCLCNYERWSDASRLLSDMIERKINPNVVTFNALI 337
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + K Y I ++ TY SLI+G D +E M+S
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 397
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ G C +++D + + G N L+ + + D +
Sbjct: 398 PNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVI 364
+ + P ++ + + L D G++ K + F+ + +E I
Sbjct: 458 FKQMVSDGVHPNIMTY------------NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505
Query: 365 CSY-----FRCAA---YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+Y C A D DLF K Y+ +++G+ R GL + D++ +
Sbjct: 506 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRK 565
Query: 417 MK 418
M+
Sbjct: 566 MR 567
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ + +++++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + ++ + I + NV
Sbjct: 273 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ Y+EM+ I P I ++ G C +LD K + +
Sbjct: 332 TFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ R+DE E +++
Sbjct: 392 ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 7/284 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 84 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 199
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I V++ LC R D + + G + N L+ C C R + L
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +P V+ F+ +I + +L + E M K+ +
Sbjct: 320 DMIERKINPNVVT--FNALIDAFVKEGKLVEAEKLYDEMIKRSI 361
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ P+ +N+L+ +G + A+ +FE +
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 497
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + +P TY+ I G G V+ + + G +V Y ++I G +
Sbjct: 498 RS-KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + +M G +P
Sbjct: 557 EEADALFRKMREDGPLP 573
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC + + LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ +C+ G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTE 325
>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
gi|238010730|gb|ACR36400.1| unknown [Zea mays]
Length = 320
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 7/216 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
VF M G PD +N+LI AL L M ++ Y P+ +Y+ I
Sbjct: 87 VFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVID 146
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G VD + GF ++ TY S+I G KA+ D + ++M+ G++P
Sbjct: 147 GLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP 206
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ ++ G C+ +L LK + GGG ++N L+ YC++GR E
Sbjct: 207 NTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIF 266
Query: 308 ETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLD 338
+++ + Q P LLH ++ L + D LD
Sbjct: 267 DSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLD 302
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 19/234 (8%)
Query: 56 KTTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC- 107
K T D++D+ + FS++ALI L + KK+Q LE L G +C
Sbjct: 78 KRTGDAMDMVFRRMPELGYTPDVFSYNALIKGL--CAEKKSQEALELLLHMTANGGYNCS 135
Query: 108 LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
D + I + G K V A +F M QG PD ++S+I LC A+
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDG-LCK---AQAMDK 191
Query: 166 FEIMVSSEEYK---PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
E + YK PN++ Y++ I G+ SLG + + G +NV TY LI
Sbjct: 192 AEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLID 251
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
K ++ M+ G P+ +L G + L + L ++
Sbjct: 252 YYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMI 305
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 96/240 (40%), Gaps = 8/240 (3%)
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMM 241
D I F ++G +D + + G+ V LI G R D++D + M
Sbjct: 33 DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92
Query: 242 SLGIIPSIPILEKVLEGLCARRK-LDRVKSFLKFLLGGGWKINENMAQK--LVKCYCELG 298
LG P + +++GLCA +K + ++ L GG+ + ++ ++ + G
Sbjct: 93 ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLFKEG 152
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
VD+ + P+++ +S +I + +D E S+ +M +G+ +
Sbjct: 153 EVDKAYFLFHEMPGQGFPPDLVT--YSSVIDGLCKAQAMDKAEASLQQMLYKGV-MPNTR 209
Query: 359 DVEMVICSYFRCAA-YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I Y + + L G +L TY+ L+ Y + G + S+ + M
Sbjct: 210 PYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSM 269
>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
Length = 350
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 7/216 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
VF M G PD +N+LI AL L M ++ Y P+ +Y+ I
Sbjct: 87 VFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVID 146
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G VD + GF ++ TY S+I G KA+ D + ++M+ G++P
Sbjct: 147 GLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP 206
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ ++ G C+ +L LK + GGG ++N L+ YC++GR E
Sbjct: 207 NTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIF 266
Query: 308 ETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLD 338
+++ + Q P LLH ++ L + D LD
Sbjct: 267 DSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLD 302
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 19/260 (7%)
Query: 56 KTTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC- 107
K T D++D+ + FS++ALI L + KK+Q LE L G +C
Sbjct: 78 KRTGDAMDMVFRRMPELGYTPDVFSYNALIKGL--CAEKKSQEALELLLHMTANGGYNCS 135
Query: 108 LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
D + I + G K V A +F M QG PD ++S+I LC A+
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDG-LCKAQ---AMDK 191
Query: 166 FEIMVSSEEYK---PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
E + YK PN++ Y++ I G+ SLG + + G +NV TY LI
Sbjct: 192 AEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLID 251
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
K ++ M+ G P+ +L G + L + L ++ G I
Sbjct: 252 YYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGIPI 311
Query: 283 NENMAQKLVKCYCELGRVDE 302
+ L+ Y + VD+
Sbjct: 312 EHRVFNILIYAYAKHETVDK 331
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 5/185 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F ++ ++I L ++ + KA+ L+ L K + N Y LI + +
Sbjct: 168 GFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTR---PYNSLIHGYCSLGQL 224
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + M G++ + +N LI G A S+F+ MV + KPN+ TY +
Sbjct: 225 VEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQ-KPNATTYCS 283
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G+++ G + M+ I G + + + LI+ K D + EM G
Sbjct: 284 LLHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNG 343
Query: 245 IIPSI 249
+ P++
Sbjct: 344 LRPNL 348
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L+KM KG E+ + Y +I K +++ A +F ME +GIKPD +N LI +CLC
Sbjct: 238 LNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI-SCLC 296
Query: 156 S------------------------------------GDVVTALSLFEIMVSSEEYKPNS 179
+ G +V A L++ MV S+ P+
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y+ I GF V+ + + G N TY +LIHG +ARD D+ +++
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 416
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G+ P I +L+GLC ++ +++ K++ +++ C+ G+
Sbjct: 417 MVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGK 476
Query: 300 VDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
V++ + +L+ P V+ + SG R
Sbjct: 477 VEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ PD +N L+ +G+V TAL +FE M
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM- 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ K + TY I G V+ + + G NV TY +++ G +
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 512
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ D + EM G +P+
Sbjct: 513 EEADALFVEMKEDGPLPN 530
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV A+ VF M+ + +K D + ++I A +G V LF +S + KPN TY
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF-CSLSLKGVKPNVVTY 499
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+SGF G + + + G N TY +LI L+ D + +EM S
Sbjct: 500 TTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRS 559
Query: 243 LG 244
G
Sbjct: 560 CG 561
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/335 (17%), Positives = 123/335 (36%), Gaps = 56/335 (16%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
++++ +I+L ++QN+ + +++T ++F + C + AL++
Sbjct: 88 MNKFDLVISLGEQMQNLGISHNLYTY----------SIFINYFCR---RSQLSLALAILG 134
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 135 KMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--------- 278
E M+ G P + V+ GLC R + D + L + G
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253
Query: 279 --------------------------GWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
G K + L+ C C GR + L + +
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI---CSYFR 369
N +P+++ FF+ +I + +L + E M K F +I C Y R
Sbjct: 314 KNINPDLV--FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371
Query: 370 CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
+ +++F + + TY L+ G+ +A
Sbjct: 372 VE--EGMEVFREMSQRGLVGNTVTYTTLIHGFFQA 404
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 5/284 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S ++ L+TS+ + L L ++D G + A +I + V FA
Sbjct: 44 STVDFNRLLTSIAKTKHHSTLLSLSRQMDSF--GIPPDVYTLAIVINSLCHLNRVDFAFS 101
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ G +PD+ F +LI G + AL LF+ M+ E ++PN TY I+G
Sbjct: 102 ALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG-EGFQPNVVTYGTLINGL 160
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
V ++ I G S N+ TY SLIHG K ++ V EM+ I+P +
Sbjct: 161 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
L V++ LC + + ++ G + N L+ +C VD + +T
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + V+ ++ +I Y +D Y M +Q L+
Sbjct: 281 MVHKDCVANVI--SYNTLINGYCKIQSVDKAMYLFEEMSRQELT 322
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M +G++P+ +N+L+ +V A+ +F+ MV ++ N +Y+ I
Sbjct: 239 AHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH-KDCVANVISYNTLI 297
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +VD + + N TY +LIHG + EM++ G I
Sbjct: 298 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI 357
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + + LC R LD+ + LK + G W + + ++ C G +++ +
Sbjct: 358 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 417
Query: 307 LETLTKCNQSPEV 319
L+ P V
Sbjct: 418 FSNLSSKGLQPNV 430
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 107/278 (38%), Gaps = 37/278 (13%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC--L 154
DKM+ +G + + Y LI K + V A ++F+ M +GI P+ +NSLI L
Sbjct: 139 DKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKL 198
Query: 155 CSGDVVTAL-----------SLFEI---------------------MVSSEEYKPNSKTY 182
C VT L +F + M+ +PN TY
Sbjct: 199 CEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTY 258
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+A + G VD K + + NV +Y +LI+G K + D +EEM
Sbjct: 259 NALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR 318
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P+ ++ GLC +L S ++ G + + L C+ +D+
Sbjct: 319 QELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDK 378
Query: 303 LEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
L+ + N P++ ++ G+ R L D D
Sbjct: 379 AMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q+V AM++F M Q + P++ +N+LI G + A+SLF MV
Sbjct: 293 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 352
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY ++D A + + ++Q Y +++ G +A +
Sbjct: 353 ARGQI-PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 411
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + + S G+ P++ ++ GLC +
Sbjct: 412 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 443
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 2/223 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D M+ +G E + Y L+ V A+ VF +M + + +N+LI
Sbjct: 243 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 302
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V A+ LFE M S +E PN+ TY+ I G +G + + +A G ++
Sbjct: 303 IQSVDKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLV 361
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L K R D + + P I I +L+G+C +L+ + L
Sbjct: 362 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 421
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G + N ++ C+ G + E + + K SP
Sbjct: 422 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPN 464
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 16/243 (6%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++ L+ K+++ + + T M++ GI PD N LI + + A S+ +
Sbjct: 583 DFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKL 642
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++P+ TY ++G + I G S ++ TY SLIH +
Sbjct: 643 LKLG-FQPDVVTYGTLMNGLCKM-------------ITKGISPDIFTYNSLIHALCNLCE 688
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ V EM++ I+P++ + V++ LC + + ++ G + +
Sbjct: 689 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 748
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ +C +DE + +T+ P V ++ +I Y R+D + +M
Sbjct: 749 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNV--RSYNILINGYCQIQRMDKAMGLLEQMSL 806
Query: 350 QGL 352
QGL
Sbjct: 807 QGL 809
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI ++Q + AM + M QG+ D+ +N+LI G +
Sbjct: 772 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 831
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++LF MV+S + P+ TY + ++ A + ++ Y I
Sbjct: 832 AIALFHEMVASGQI-PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAI 890
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G +A + ++ + + S G+ P + ++ GLC R LD + K
Sbjct: 891 DGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFR-------K 943
Query: 282 INEN 285
++EN
Sbjct: 944 MDEN 947
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I P+ VF++++ A G + A + ++M+ +P+ TY A
Sbjct: 691 HVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIK-RGVEPDVVTYTAL 749
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G +D K + + G NV++Y LI+G + + D E+M G+
Sbjct: 750 MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 809
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
I ++ GLC +L + ++ G
Sbjct: 810 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 843
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 2/220 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A HV M +G+KP+ +LI G A LF ++ S YKPN
Sbjct: 155 KRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNV 214
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I G+ G + + G N TY +LI G K FD +
Sbjct: 215 HTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNK 274
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G +P+I V++G C + K+ L+ G K ++ L+ +C+ G
Sbjct: 275 MKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 334
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + + + + P++ ++ +I Y ++++
Sbjct: 335 ITYALDLFDRMVENGCCPDI--EAYTSLISTYCQQRQMEE 372
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 126/294 (42%), Gaps = 6/294 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++A G+ +P A + M + G+ N ++ L +G V A +F+ M +
Sbjct: 9 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P ++ + A + G V+ ++ AA GFS++ T ++ + F V
Sbjct: 69 -VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 127
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
F+ M+ G P++ ++GLC RR + + L+ ++G G K N L+
Sbjct: 128 SEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 187
Query: 294 YCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C++G + L K + P V H ++ +I Y +L E + RM +QGL
Sbjct: 188 LCKIGWTERAFRLFLKLIKSSSYKPNV--HTYTVMIGGYCREGKLARAEMLLVRMVEQGL 245
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAG 405
+ +I + + ++DR ++ +K L TY+ ++ G+ + G
Sbjct: 246 K-PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 298
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 1/189 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + + A + M QG+KP++ + +LI G A L M
Sbjct: 217 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKM- 275
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I GF G + K + G + TY LI K
Sbjct: 276 KQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 335
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M+ G P I ++ C +R+++ + F L G + +
Sbjct: 336 TYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 395
Query: 291 VKCYCELGR 299
+ YC++GR
Sbjct: 396 IAGYCKVGR 404
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQN 123
F + ++++A+I KK ++ +++ +M D+ Y LI K +
Sbjct: 279 GFLPNIYTYNAVIDGF----CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 334
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE--IMVSSEEYKPNSKT 181
+ +A+ +F M G PD + SLI + + F+ +M+ P +T
Sbjct: 335 ITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG---LLPTKQT 391
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y + I+G+ +G + + + G + TY +LI G K + YE M+
Sbjct: 392 YTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGML 451
Query: 242 SLGIIP 247
++P
Sbjct: 452 DKRLVP 457
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 9/238 (3%)
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
++ F G + + G + V+T ++ L+ F + ++ M
Sbjct: 8 GMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRA 67
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P ++ C K++ V + L + G+ ++ +V+ CE GR ++
Sbjct: 68 GVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 127
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E + + P V+ + + G+ + + +E VGR K + +
Sbjct: 128 SEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT---- 183
Query: 362 MVICSYFRCAAYDR-LDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + +R LFL IK S YK TY ++ GY R G + + ++ M
Sbjct: 184 -LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 240
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 7/346 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI +L S K L L + + KG E + Y LI K + A + +
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKE--KGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+ P +N+LI G + A + ++M S PN++TY+ I G
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNSCGPNTRTYNELICGLCKK 417
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
V + S ++ TY SLIHG K D +S R M G++P
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ LC +++ + + G K NE + L+ YC++G++D LE +
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P + ++ +I ++ + V +M G+ + ++I + A
Sbjct: 538 DACLPNS--YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK-PTVVTYTILIGEMLKDGA 594
Query: 373 YDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+D L +F + Y+ TY + Y G+ ++D VI +M
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 6/196 (3%)
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
S+I +C DV+ L +F M + E+K P + Y+ + S +D M Y
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ S N+ T+ ++++G K + + + +++ G+ P ++ G C + +
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + G + NE L+ CE GR++E + +T+ N P V +
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY--- 302
Query: 326 GIIRLYALSDRLDDVE 341
+ +YALS VE
Sbjct: 303 -TVLIYALSGSGRKVE 317
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 3/199 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ NV A + + G+ PD+ + SLI + V A +F IM + + N
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM-PQKGCQRNE 264
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYE 238
+Y I G G ++ K +A V+TY LI+ S R ++++ F
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF-N 323
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G P++ +++GLC K+D + L + G + L+ YC+ G
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Query: 299 RVDELEEQLETLTKCNQSP 317
+D+ E L+ + + P
Sbjct: 384 MIDDAFEILDLMESNSCGP 402
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 114/303 (37%), Gaps = 62/303 (20%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE- 110
V + T DSV +++ + ALI L L++ML N++CL
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL---LERML--NDACLPNS 544
Query: 111 --YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y LI K + + A + M G+KP + LI L G AL +F
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG----- 223
MVS Y+P+ TY AF+ + S G ++ ++ A G ++ TY LI G
Sbjct: 605 MVSLG-YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663
Query: 224 -SLKARDF--------------------------------------DSVD---------R 235
+ +A DF DSV +
Sbjct: 664 LTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALK 723
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+E+M+ G + I ++ G C + +L+ + + + G +E++ L+ C C
Sbjct: 724 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 783
Query: 296 ELG 298
+LG
Sbjct: 784 KLG 786
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 58/340 (17%)
Query: 76 ALIT--SLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVF 131
+LIT SL K L +RL ++ N D+ Y+ I K V A +F
Sbjct: 438 SLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF 497
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF-- 189
S++A+G+K + ++ +LI G + A SL E M++ + PNS TY+ I G
Sbjct: 498 DSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCK 556
Query: 190 -------SSL--------------------------GNVDAMNKWYAANIAAGFSVNVQT 216
SSL G D K + ++ G+ +V T
Sbjct: 557 EKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCT 616
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y + +H + VD +M GI+P + +++G R FLK ++
Sbjct: 617 YTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMV 676
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFF----------- 324
G K + + L+K R+ E ++ + N E+ L F
Sbjct: 677 DTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTID 736
Query: 325 ----SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
+I + +RL++ + V M ++G+S +ED+
Sbjct: 737 VSIYGALIAGFCQQERLEEAQGLVHHMKERGMS--PSEDI 774
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + + A + M+ +G+ P ++NSL+ C G A+ L + MV
Sbjct: 740 YGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMV 799
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P ++Y + G G+ + + ++ G++ + ++ LI G LK
Sbjct: 800 EN-GLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLV 858
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D + M G P+ ++EGL
Sbjct: 859 DECSELIDIMEEKGCQPNPLTYSLLIEGL 887
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 18/322 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N+ AM M +G+ P+ + +LI G + A + + MV
Sbjct: 346 YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P TY+A I+G LG ++ + I GF +V +Y ++I G + ++
Sbjct: 406 ENG-FTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + EM++ GI P + +++GLC +R+L V + +L G +E L
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSL 524
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPE-----VLLHFFSG----------IIRLYALSD 335
+ YC G +D+ + + + SP+ VL++ F+ +++L
Sbjct: 525 INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYD 395
+++ Y+ L FKSA + C DR + ++ YKL Y+
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR--VLESMLQKGYKLNEEVYN 642
Query: 396 FLVAGYRRAGLSGKLDSVINEM 417
++ G+ + G K ++ EM
Sbjct: 643 VIIHGHSKVGNIEKAYNLYKEM 664
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 130/306 (42%), Gaps = 10/306 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K++ + A + M +G+ P+ +N +I G + + E M
Sbjct: 241 YNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM- 299
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S Y P+ T++ I+G+ ++GN +A + G S NV TY +LI+ KA +
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F ++M G+ P+ +++G + L + +K ++ G+ L
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C LGR+++ L+ + + P+V+ +S II + + L+ M +
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVV--SYSTIISGFCRNQELEKAFQLKVEMVAK 477
Query: 351 GLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
G+S A ++ +C R + DLF + + TY L+ Y + G
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLG--EVCDLFQEMLSLGLPPDEVTYTSLINAY---CIEG 532
Query: 409 KLDSVI 414
LD +
Sbjct: 533 DLDKAL 538
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 8/281 (2%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAM 198
K SAVF+ ++ +C + ALS+ + S + P +Y+A + + +V
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + +G S NV TY LI G A + + F+ EM G +P++ +++
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDA 247
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C RK+ L+ + G N ++ C G++ E E LE ++K P+
Sbjct: 248 YCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPD 307
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
+ F+ +I Y M K GLS + +I S + +R
Sbjct: 308 RVT--FNTLINGYCNVGNFHQALVLHAEMVKNGLS-PNVVTYTTLINSMCKAGNLNRAME 364
Query: 379 FLDHI--KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
FLD + +G + R TY L+ G+ + G + ++ EM
Sbjct: 365 FLDQMRDRGLHPNGR-TYTTLIDGFSQQGFLKQAYQIMKEM 404
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ +++ + KG + Y+ LI K + + +F M + G+ PD + SLI A
Sbjct: 468 FQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
GD+ AL L + M+ + + P+ TY+ I+GF+ + +
Sbjct: 528 YCIEGDLDKALRLHDEMI-QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVP 586
Query: 213 NVQTYESLIHGSLKARDFDSVDRF-YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
N TY +LI D+ + ++ ++L ++G C + ++
Sbjct: 587 NEITYNTLI---------DNCNNLEFKSALAL------------MKGFCMKGLMNEADRV 625
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
L+ +L G+K+NE + ++ + ++G +++
Sbjct: 626 LESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 2/220 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A HV M +G+KP+ +LI G A LF ++ S YKPN
Sbjct: 263 KRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNV 322
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I G+ G + + G N TY +LI G K FD +
Sbjct: 323 HTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNK 382
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G +P+I V++G C + K+ L+ G K ++ L+ +C+ G
Sbjct: 383 MKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 442
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + + + + P++ ++ +I Y ++++
Sbjct: 443 ITYALDLFDRMVENGCCPDI--EAYTSLISTYCQQRQMEE 480
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 6/294 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++A G+ +P A + M + G+ N ++ L +G V A +F+ M +
Sbjct: 117 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 176
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ +++ A + G V+ ++ AA GFS++ T ++ + F V
Sbjct: 177 -VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 235
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
F+ M+ G P++ ++GLC RR + + L+ ++G G K N L+
Sbjct: 236 SEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 295
Query: 294 YCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C++G + L K + P V H ++ +I Y +L E + RM +QGL
Sbjct: 296 LCKIGWTERAFRLFLKLIKSSSYKPNV--HTYTVMIGGYCREGKLARAEMLLVRMVEQGL 353
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAG 405
+ +I + + ++DR ++ +K L TY+ ++ G+ + G
Sbjct: 354 K-PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 406
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 1/189 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + + A + M QG+KP++ + +LI G A L M
Sbjct: 325 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKM- 383
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I GF G + K + G + TY LI K
Sbjct: 384 KQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 443
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M+ G P I ++ C +R+++ + F L G + +
Sbjct: 444 TYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSM 503
Query: 291 VKCYCELGR 299
+ YC++GR
Sbjct: 504 IAGYCKVGR 512
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQN 123
F + ++++A+I KK ++ +++ +M D+ Y LI K +
Sbjct: 387 GFLPNIYTYNAVIDGF----CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 442
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE--IMVSSEEYKPNSKT 181
+ +A+ +F M G PD + SLI + + F+ +M+ P +T
Sbjct: 443 ITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG---LLPTKQT 499
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y + I+G+ +G + + + G + TY +LI G K + YE M+
Sbjct: 500 YTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGML 559
Query: 242 SLGIIP 247
++P
Sbjct: 560 DKRLVP 565
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 9/238 (3%)
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
++ F G + + G + V+T ++ L+ F + ++ M
Sbjct: 116 GMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRA 175
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P ++ C K++ V + L + G+ ++ +V+ CE GR ++
Sbjct: 176 GVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 235
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E + + P V+ + + G+ + + +E VGR K + +
Sbjct: 236 SEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT---- 291
Query: 362 MVICSYFRCAAYDR-LDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + +R LFL IK S YK TY ++ GY R G + + ++ M
Sbjct: 292 -LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 348
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 5/275 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G++PD A + +L+ G +V +L ++MV + + P+ ++ I
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH-PDHHVFNILI 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ VD ++ G + NV TY ++I K+ D ++E+M+ G+
Sbjct: 379 CAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I + ++ LC K D+ + + +L G +N ++ +C+ GRV E E+
Sbjct: 439 PNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKL 498
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + P V+ +S +I Y L+ ++D+ + M G+ +I
Sbjct: 499 FDLMVRIGVKPNVIT--YSTLIDGYCLAGKMDEATKLLSSMFSVGMK-PDCVTYNTLING 555
Query: 367 YFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAG 400
Y R + D L LF + + TY+ ++ G
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 590
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 5/246 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N + ++ A+I L +S S A L E +D+ L N + Y LI
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN---IIVYTSLIHSLCIFDKW 457
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M +GI ++ FNS+I + G V+ + LF++MV KPN TY
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG-VKPNVITYST 516
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G+ G +D K ++ + G + TY +LI+G + D ++EM+S G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P+I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636
Query: 305 EQLETL 310
+ L
Sbjct: 637 RMFQNL 642
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 12/304 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V T+M G+ P+ +NS++ S A+ + M
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM- 292
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G ++ TY +L+ G
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P + ++ + K+D + G N +
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G VD+ E + +P +++ ++ +I + D+ D E + M +
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIV--YTSLIHSLCIFDKWDKAEELILEMLDR 470
Query: 351 GLSFKSA--EDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
G+ + + C R ++L DL ++ K TY L+ GY L+
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLM---VRIGVKPNVITYSTLIDGY---CLA 524
Query: 408 GKLD 411
GK+D
Sbjct: 525 GKMD 528
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 5/228 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A + M + I PD ++S+I A LC G + A+ + MV + PN TY++
Sbjct: 215 AYSTYHEMLDRRISPDVVTYSSIIAA-LCKGQAMDKAMEVLTTMVKNG-VMPNCMTYNSI 272
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G+ S + + G +V TY SL+ K + ++ M G+
Sbjct: 273 LHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGL 332
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I +L+G + L + + L ++ G + ++ L+ Y + +VDE
Sbjct: 333 EPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAML 392
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +P V+ + +I + S +DD +M +GL+
Sbjct: 393 VFSKMRQHGLNPNVVT--YGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 5/210 (2%)
Query: 162 ALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL L +M P+ +Y I+GF G+ D Y + S +V TY S
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+I K + D M+ G++P+ +L G C+ + FLK + G
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + L+ C+ GR E + +++TK P++ + +++ YA L +
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT--YCTLLQGYATKGALVE 354
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ + M + G+ ++IC+Y +
Sbjct: 355 MHALLDLMVRNGIH-PDHHVFNILICAYAK 383
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +++LI +G + A L M S KP+ TY+ I+G+
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG-MKPDCVTYNTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +D + +++G S N+ TY ++ G R + Y + G +
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC D + L ++ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKD 672
>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 2/219 (0%)
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
V W+ K+ E EYA +I+ +G++ A +F ME +GIK + +N+LI
Sbjct: 2 VFNWKKSKLRW--EVNPKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIH 59
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+ + + AL LFE M + + +P TY+ IS +S +G + M K + A F
Sbjct: 60 SYGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFV 119
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ TY +LI G ++A + ++ + E+ + + ++ G +D+++
Sbjct: 120 PDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVV 179
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L + G IN L+ Y G D L + +E +
Sbjct: 180 LSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVV 218
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 37/256 (14%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D ++ + S++ALI S +++ P+KA + E+ K+ + L Y LI++
Sbjct: 39 FDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYM--KVTVDCQPTLVTYNTLISM 96
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-------------------D 158
++ +F PD +N+LI + +G D
Sbjct: 97 YSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNAD 156
Query: 159 VVT------------ALSLFEIMVSSEE---YKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
V+T A+ E+++SS + N+ A I +S G D + K
Sbjct: 157 VITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTME 216
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
AG+ + TY LI K D +++ + EMM+ + PS + ++ A
Sbjct: 217 VVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNASVKPSFETFQYMINAYEAAD 276
Query: 264 KLDRVKSFLKFLLGGG 279
+V L + G
Sbjct: 277 NETQVDRILDLMRKAG 292
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 18/322 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N+ AM M +G+ P+ + +LI G + A + + MV
Sbjct: 346 YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P TY+A I+G LG ++ + I GF +V +Y ++I G + ++
Sbjct: 406 ENG-FTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + EM++ GI P + +++GLC +R+L V + +L G +E L
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSL 524
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPE-----VLLHFFSG----------IIRLYALSD 335
+ YC G +D+ + + + SP+ VL++ F+ +++L
Sbjct: 525 INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYD 395
+++ Y+ L FKSA + C DR + ++ YKL Y+
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADR--VLESMLQKGYKLNEEVYN 642
Query: 396 FLVAGYRRAGLSGKLDSVINEM 417
++ G+ + G K ++ EM
Sbjct: 643 VIIHGHSKVGNIEKAYNLYKEM 664
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 130/306 (42%), Gaps = 10/306 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K++ + A + M +G+ P+ +N +I G + + E M
Sbjct: 241 YNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM- 299
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S Y P+ T++ I+G+ ++GN +A + G S NV TY +LI+ KA +
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F ++M G+ P+ +++G + L + +K ++ G+ L
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNAL 419
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C LGR+++ L+ + + P+V+ +S II + + L+ M +
Sbjct: 420 INGHCILGRMEDASGLLQEMIERGFIPDVV--SYSTIISGFCRNQELEKAFQLKVEMVAK 477
Query: 351 GLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
G+S A ++ +C R + DLF + + TY L+ Y + G
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLG--EVCDLFQEMLSLGLPPDEVTYTSLINAY---CIEG 532
Query: 409 KLDSVI 414
LD +
Sbjct: 533 DLDKAL 538
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 8/281 (2%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAM 198
K SAVF+ ++ +C + ALS+ + S + P +Y+A + + +V
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVN-LAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + +G S NV TY LI G A + + F+ EM G +P++ +++
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDA 247
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C RK+ L+ + G N ++ C G++ E E LE ++K P+
Sbjct: 248 YCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPD 307
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
+ F+ +I Y M K GLS + +I S + +R
Sbjct: 308 RVT--FNTLINGYCNVGNFHQALVLHAEMVKNGLS-PNVVTYTTLINSMCKAGNLNRAME 364
Query: 379 FLDHI--KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
FLD + +G + R TY L+ G+ + G + ++ EM
Sbjct: 365 FLDQMRDRGLHPNGR-TYTTLIDGFSQQGFLKQAYQIMKEM 404
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ +++ + KG + Y+ LI K + + +F M + G+ PD + SLI A
Sbjct: 468 FQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
GD+ AL L + M+ + + P+ TY+ I+GF+ + +
Sbjct: 528 YCIEGDLDKALRLHDEMI-QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVP 586
Query: 213 NVQTYESLIHGSLKARDFDSVDRF-YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
N TY +LI D+ + ++ ++L ++G C + ++
Sbjct: 587 NEITYNTLI---------DNCNNLEFKSALAL------------MKGFCMKGLMNEADRV 625
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
L+ +L G+K+NE + ++ + ++G +++
Sbjct: 626 LESMLQKGYKLNEEVYNVIIHGHSKVGNIEK 656
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 2/211 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + + F M +GI+P FN LI SG V TA
Sbjct: 110 GVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE + S E P+ TY+ I+G++ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDL-KSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G D R EEM LGI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTK 312
+N + +L+ C+ G +D + L+ + +
Sbjct: 289 KDNSIFIRLISSQCKAGNLDAAADVLKAMIR 319
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + V A+ + M+ GIKP++ +++L+ + + A SL + MV
Sbjct: 223 YTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMV 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ + IS GN+DA A I Y LI KA +
Sbjct: 283 DKYIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPTEAGHYGVLIENYCKAGKY 342
Query: 231 DSVDRFYEEMMSLGII 246
D + +++++ II
Sbjct: 343 DQAVKLFDKLIEKDII 358
>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 574
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 7/357 (1%)
Query: 65 FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
N + +++ LI + P+++ +L+ L++ + + L+ K +
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
V A V ME G++PD+ +N++ + G+ V A S + E MV E+ KPN +T
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ G+ G V ++ N+ + SLI+G ++ D D +D M
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + V+ + +++ K ++ G K + + L K Y +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKK 383
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
EE LETL P V++ F+ +I + + +DD +M K G+S + + E
Sbjct: 384 AEELLETLI-VESRPNVVI--FTTVISGWCSNGSMDDAMRVFNKMCKFGVS-PNIKTFET 439
Query: 363 VICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++ Y + + L ++G K +T+ L +R AGL+ + + IN +K
Sbjct: 440 LMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P +AQ V + + G+ L Y L+A + + + +E G K
Sbjct: 56 IERGRPHEAQTVFKTLAET---GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK 112
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
DS FN++I A SG++ A+ + + P + TY+ I G+ G + ++
Sbjct: 113 LDSIFFNAVINAFSESGNMEDAVQAL-LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 201 WYAANIAAG---FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N++T+ L+ K + + ++M G+ P +
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 258 GLCARRKLDRVKSFL--KFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + R +S + K ++ K N +V YC GRV
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRV 276
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
T LQ + K A + + LD M++ N D Y C A GKV AM VF+
Sbjct: 311 TLLQGYATKGALVGMHALLDLMVR-NGIHPDHYVYNILICAYAKQGKVDE---AMLVFSK 366
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 367 MRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 424
Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
NKW A + G +N + S+I K ++ ++ M+ +G+ P
Sbjct: 425 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 479
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
I +++G C K+D L ++ G K N + L+ YC++ R+ +
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLF 539
Query: 308 ETLTKCNQSPEVLLH 322
+ + SP+++ +
Sbjct: 540 KEMESSGVSPDIITY 554
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 100/207 (48%), Gaps = 3/207 (1%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E G++PD A + +L+ G +V +L ++MV + + P+ Y+ I ++
Sbjct: 296 GVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIH-PDHYVYNILICAYAKQ 354
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G VD ++ G + + TY ++I K+ + ++E+M+ G+ P +
Sbjct: 355 GKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 414
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ GLC K +R + + +L G +N ++ +C+ GRV E E+ + + +
Sbjct: 415 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 474
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDD 339
P+++ +S +I Y L+ ++D+
Sbjct: 475 IGVKPDIIT--YSTLIDGYCLAGKMDE 499
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 36/207 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 379 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 438
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LF++MV KP+ TY I G+ G +
Sbjct: 439 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKM 497
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K + ++ G N TY +LI+G K ++EM S G+ P I +
Sbjct: 498 DEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNII 557
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKI 282
L+GL R+ K + G +I
Sbjct: 558 LQGLFQTRRTAAAKELYVRITESGTQI 584
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KPD +++LI +G + A+ L MVS KPN+ TY I+G+
Sbjct: 468 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYRTLINGY 526
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ + + ++G S ++ TY ++ G + R + Y + G +
Sbjct: 527 CKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 586
Query: 250 PILEKVLEGLCARRKLD 266
+L GLC + D
Sbjct: 587 STYNIILHGLCKNKLTD 603
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 13/185 (7%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ +Y I+GF G+ Y + S +V TY S+I K + D
Sbjct: 194 PDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M+ G++P+ ++ G C+ + FLK + G + + + + YC
Sbjct: 254 LTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDG--VEPDGLEPDIATYCT 311
Query: 297 L-------GRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMG 348
L G + + L+ + + P+ H+ ++ +I YA ++D+ +M
Sbjct: 312 LLQGYATKGALVGMHALLDLMVRNGIHPD---HYVYNILICAYAKQGKVDEAMLVFSKMR 368
Query: 349 KQGLS 353
+QGL+
Sbjct: 369 QQGLN 373
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%)
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + +V +Y ++I+G K D Y EM+ I P + ++ LC + +D
Sbjct: 189 GGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ L ++ G N ++ YC G+ E
Sbjct: 249 KAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKE 284
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 2/222 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A HV M +G+KP+ +LI G A LF ++ S YKPN
Sbjct: 255 KRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNV 314
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I G+ G + + G N TY +LI G K FD +
Sbjct: 315 HTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNK 374
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G +P+I V++G C + K+ L+ G K ++ L+ +C+ G
Sbjct: 375 MKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 434
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ + + + + P++ ++ +I Y ++++ +
Sbjct: 435 ITYALDLFDRMVENGCCPDI--EAYTSLISTYCQQRQMEESQ 474
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 6/294 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++A G+ +P A + M + G+ N ++ L +G V A +F+ M +
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ +++ A + G V+ ++ AA GFS++ T ++ + F V
Sbjct: 169 -VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 227
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
F+ M+ +G P++ ++GLC RR + + L+ ++G G K N L+
Sbjct: 228 SEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 287
Query: 294 YCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C++G + L K + P V H ++ +I Y +L E + RM +QGL
Sbjct: 288 LCKIGWTERAFRLFLKLIKSSSYKPNV--HTYTVMIGGYCREGKLARAEMLLVRMVEQGL 345
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAG 405
+ +I + + ++DR ++ +K L TY+ ++ G+ + G
Sbjct: 346 K-PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 398
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M QG+KP++ + +LI G A L M E + PN TY+A I GF
Sbjct: 336 LLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKM-KQEGFLPNIYTYNAVIDGF 394
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G + K + G + TY LI K ++ M+ G P I
Sbjct: 395 CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDI 454
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ C +R+++ + F L G + ++ YC++GR
Sbjct: 455 EAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGR 504
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 9/238 (3%)
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
++ F G + + G + V+T ++ L+ F + ++ M
Sbjct: 108 GMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRA 167
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P ++ C K++ V + L + G+ ++ +V+ CE GR ++
Sbjct: 168 GVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDV 227
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E + + P V+ + + G+ + + +E VGR K + +
Sbjct: 228 SEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT---- 283
Query: 362 MVICSYFRCAAYDR-LDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + +R LFL IK S YK TY ++ GY R G + + ++ M
Sbjct: 284 -LIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRM 340
>gi|357129195|ref|XP_003566251.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Brachypodium distachyon]
Length = 502
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 145/315 (46%), Gaps = 6/315 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L E+ I+L+ + ++ P + + + PD A++N+L+ A + SG V L F+
Sbjct: 147 LPEFTLAISLASRARD-PATAGILFADASSSCCPDQALYNALMSAYMHSGLVDRCLETFQ 205
Query: 168 -IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ S PN+ +Y+ I+ F VD M + A+G + TY ++I G L
Sbjct: 206 DLQRDSRCGPPNADSYNILIALFGRSLLVDHMEATLQSLDASGQPRTIGTYNAIIAGYLT 265
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A +D ++ + EM+ + P +L G + +++ + KI+
Sbjct: 266 AWMWDKMEAMFHEMVESQVDPDTTTHLLMLRGYAHAGMIYKMERAHERACERAGKIDMVH 325
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG-IIRLYALSDRLDDVEYSVG 345
+ ++ YC+ VD++++ + L K PE + + +IR+YA +D +E +
Sbjct: 326 IRAMLCAYCKFAHVDKIQKIEKLLQKLG--PEDYRPWLNVLLIRVYANEGLVDGMERRIT 383
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRA 404
++ + + + VI SYF+C A DRL F+ + +KL R+ Y + Y +
Sbjct: 384 EALERNTTVTTTHVMRSVITSYFQCDAVDRLAHFVQQAEEAGWKLCRSLYHCKMVMYGKH 443
Query: 405 GLSGKLDSVINEMKF 419
++ V+ EM++
Sbjct: 444 HRLEEMHGVLEEMEY 458
>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
Length = 700
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 6/237 (2%)
Query: 60 DSVDIFA-FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
D D+ A F S F DA++T ++P+ A LVL L+ + E L Y + +
Sbjct: 126 DVSDVIAKFGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVIL--YNVTMKVF 183
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKP 177
K +++ + +F M +G+KPD+A F +LI CA C G A+ FE M S +P
Sbjct: 184 RKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQC-GLPKRAVEWFEKMPSFG-LEP 241
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ T A I + GNV+ Y + ++ T+ +LI A ++D Y
Sbjct: 242 DNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIY 301
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
EEM SLG+ P++ I ++L+ + ++ + K L+ G++ N + L++ Y
Sbjct: 302 EEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAY 358
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D + G E YA LI G+ + A+ ++ M+ +G++ ++N+L+ C G
Sbjct: 338 DLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIG 397
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A +F+ M SS +P+S T+ + I+ +S G V AGF +
Sbjct: 398 YVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVL 457
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLI KA+ D V R +E+++ LGI P
Sbjct: 458 TSLIQCYGKAKQVDDVVRTFEQVLELGIEP 487
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 116/289 (40%), Gaps = 59/289 (20%)
Query: 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA----------------M 128
+P KA W K NE Y +I + G+ +N+ A +
Sbjct: 200 TPAKALHFFRWVEAKGFTHNE---QSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESI 256
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF +M+ G+ P FNSL+ L G A LF+ M+ + P++ T++ I G
Sbjct: 257 KVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRG 316
Query: 189 FSSLGNVDAMNKWY-------------------------------AANIAAG-------F 210
F VD W+ A N+ G
Sbjct: 317 FCMNSMVDE-GFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNL 375
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S NV TY +LI G +D EM+S G+ P+ +++GLC +KLD++K
Sbjct: 376 SPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKE 435
Query: 271 FLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ ++G GG+ + L+K +C +G+++E E +++ P+
Sbjct: 436 ILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 484
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 14/205 (6%)
Query: 118 SGKVQNVPFAMHVFTSM--EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+GKV+ A +V M ++ + P+ + +LI D+ ALSL MVS
Sbjct: 355 AGKVK---IAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS-RGL 410
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN TY+ I G +D + + + GF + T +LI +
Sbjct: 411 KPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAF 470
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+E+M L + P ++ LC R R + F L +++ + LV Y
Sbjct: 471 SVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 530
Query: 295 -------CELGRVDELEEQLETLTK 312
C G+ + E L K
Sbjct: 531 NPMFEYLCSNGKTKKAERVFRQLMK 555
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 7/346 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI +L S K L L + + KG E + Y LI K + A + +
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKE--KGCEPNVHTYTVLIDGLCKENKMDEARKMLS 358
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+ P +N+LI G + A + ++M S PN++TY+ I G
Sbjct: 359 EMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNSCGPNTRTYNELICGLCKK 417
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
V + S ++ TY SLIHG K D +S R M G++P
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ LC +++ + + G K NE + L+ YC++G++D LE +
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P + ++ +I ++ + V +M G+ + ++I + A
Sbjct: 538 DACLPNS--YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK-PTVVTYTILIGEMLKDGA 594
Query: 373 YDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+D L +F + Y+ TY + Y G+ ++D VI +M
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 6/196 (3%)
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
S+I +C DV+ L +F M + E+K P + Y+ + S +D M Y
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ S N+ T+ ++++G K + + + +++ G+ P ++ G C + +
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGV 245
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + G + NE L+ CE GR++E + +T+ N P V +
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTY--- 302
Query: 326 GIIRLYALSDRLDDVE 341
+ +YALS VE
Sbjct: 303 -TVLIYALSGSGRKVE 317
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 3/199 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ NV A + + G+ PD+ + SLI + V A +F IM + + N
Sbjct: 206 KIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM-PQKGCQRNE 264
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYE 238
+Y I G G ++ K +A V+TY LI+ S R ++++ F
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF-N 323
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G P++ +++GLC K+D + L + G + L+ YC+ G
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Query: 299 RVDELEEQLETLTKCNQSP 317
+D+ E L+ + + P
Sbjct: 384 MIDDAFEILDLMESNSCGP 402
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 38/250 (15%)
Query: 95 WRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+RL ++ N D+ Y+ I K V A +F S++A+G+K + ++ +LI
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF---------SSL----------- 192
G + A SL E M++ + PNS TY+ I G SSL
Sbjct: 519 YCKVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577
Query: 193 ---------------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
G D K + ++ G+ +V TY + +H + VD
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M GI+P + +++G R FLK ++ G K + + L+K
Sbjct: 638 AKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697
Query: 298 GRVDELEEQL 307
R+ E ++
Sbjct: 698 NRMKETRSEI 707
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 32/258 (12%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
+ ++++ LI L K L ++ M G + + Y LI K A+
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTM--GVKPTVVTYTILIGEMLKDGAFDHALK 600
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M + G +PD + + + A G + + M + E P+ TY I G+
Sbjct: 601 VFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM-NEEGILPDLVTYTVLIDGY 659
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH---------------GSLKARDFDSVD 234
+ LG + + G ++ LI G + +SVD
Sbjct: 660 ARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVD 719
Query: 235 --------------RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ +E+M+ G + I ++ G C + +L+ + + + G
Sbjct: 720 IADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGM 779
Query: 281 KINENMAQKLVKCYCELG 298
+E++ L+ C C+LG
Sbjct: 780 SPSEDIYNSLLDCCCKLG 797
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 137/339 (40%), Gaps = 34/339 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ FA+ VF M +G++PD +N +I GD V A ++E ++
Sbjct: 186 YGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLL 245
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E P+ +Y+ ISG G + + ++ TY +LIHG +A D
Sbjct: 246 REELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDL 305
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC---------------ARRKLDRVKS---FL 272
+ YEEM+ G+ P + +L GLC + L V+S FL
Sbjct: 306 GGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIFL 365
Query: 273 KFLLGGGWKINENMA-------------QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
K L G K+++ M +V C G V+ + LE +V
Sbjct: 366 KGLFENG-KVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDV 424
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDL 378
+S +I RLD+ + V M K+G F S ++I + + + D + +
Sbjct: 425 DEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNS-HVCNVLIDGFVKHSKLDSAVKV 483
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
F + L +Y+ L+ G RA + +NEM
Sbjct: 484 FREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEM 522
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 3/188 (1%)
Query: 127 AMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ V E + G+ D ++SLI A G + A + E+M + K NS +
Sbjct: 408 ALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELM-NKRGCKFNSHVCNV 466
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I GF +D+ K + G S+ V +Y LI+G L+A F EM+ G
Sbjct: 467 LIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKG 526
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P I ++ GL +D L G K + M ++ C G+V++
Sbjct: 527 WKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDAL 586
Query: 305 EQLETLTK 312
+ TL +
Sbjct: 587 QLYSTLRQ 594
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +G KPD +++LI S + AL L+ + + +KP+ Y+ I S
Sbjct: 520 NEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTG-HKPDIIMYNIVIHRLCS 578
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G V+ + Y+ + VN+ T+ +++ G K + + + + ++ + P I
Sbjct: 579 SGKVEDALQLYST-LRQKKCVNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIIS 637
Query: 252 LEKVLEGLCARRKLDRVKSFL 272
L+GLC+ ++ FL
Sbjct: 638 YNITLKGLCSCGRVTDAVGFL 658
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 5/275 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G++PD A + +L+ G +V +L ++MV + + P+ ++ I
Sbjct: 320 ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH-PDHHVFNILI 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ VD ++ G + NV TY ++I K+ D ++E+M+ G+
Sbjct: 379 CAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I + ++ LC K D+ + + +L G +N ++ +C+ GRV E E+
Sbjct: 439 PNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKL 498
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + P V+ +S +I Y L+ ++D+ + M G+ +I
Sbjct: 499 FDLMVRIGVKPNVIT--YSTLIDGYCLAGKMDEATKLLSSMFSVGMK-PDCVTYNTLING 555
Query: 367 YFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAG 400
Y R + D L LF + + TY+ ++ G
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 590
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 5/246 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N + ++ A+I L +S S A L E +D+ L N + Y LI
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN---IIVYTSLIHSLCIFDKW 457
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M +GI ++ FNS+I + G V+ + LF++MV KPN TY
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG-VKPNVITYST 516
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G+ G +D K ++ + G + TY +LI+G + D ++EM+S G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P+I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636
Query: 305 EQLETL 310
+ L
Sbjct: 637 RMFQNL 642
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 12/304 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V T+M G+ P+ +NS++ S A+ + M
Sbjct: 234 YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM- 292
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G ++ TY +L+ G
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P + ++ + K+D + G N +
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G VD+ E + +P +++ ++ +I + D+ D E + M +
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIV--YTSLIHSLCIFDKWDKAEELILEMLDR 470
Query: 351 GLSFKSA--EDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
G+ + + C R ++L DL ++ K TY L+ GY L+
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLM---VRIGVKPNVITYSTLIDGY---CLA 524
Query: 408 GKLD 411
GK+D
Sbjct: 525 GKMD 528
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +++LI +G + A L M S KP+ TY+ I+G+
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG-MKPDCVTYNTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +D + +++G S N+ TY ++ G R + Y + G +
Sbjct: 557 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L GLC D + L ++ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 676
Query: 310 LTKCNQSPEV 319
L+ P+V
Sbjct: 677 LSANGLVPDV 686
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 5/210 (2%)
Query: 162 ALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL L +M P+ +Y I+GF G+ D Y + S +V TY S
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+I K + D M+ G++P+ +L G C+ + FLK + G
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + L+ C+ GR E + +++TK P++ + +++ YA L +
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT--YCTLLQGYATKGALVE 354
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ + M + G+ ++IC+Y +
Sbjct: 355 MHALLDLMVRNGI-HPDHHVFNILICAYAK 383
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 5/228 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A + M + I PD ++S+I A LC G + A+ + MV + PN TY++
Sbjct: 215 AYSTYHEMLDRRISPDVVTYSSIIAA-LCKGQAMDKAMEVLTTMVKNG-VMPNCMTYNSI 272
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G+ S + + G +V TY SL+ K + ++ M G+
Sbjct: 273 LHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGL 332
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I +L+G + L + + L ++ G + ++ L+ Y + +VDE
Sbjct: 333 EPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAML 392
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +P V+ + +I + S +DD +M +GL+
Sbjct: 393 VFSKMRQHGLNPNVVT--YGAVIGILCKSGSVDDAMLYFEQMIDEGLT 438
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 2/217 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + A F M ++GI+P FN +I SG V TA
Sbjct: 110 GVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETA 169
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
FE M S E P+ TY+ I+G+ + ++ K++ V TY +LI
Sbjct: 170 NRFFEDM-KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIK 228
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + D R EEM GI P+ +L GLC K+ +S LK ++
Sbjct: 229 GYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAP 288
Query: 283 NEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+N + +L+ C G +D + L+ + + + E
Sbjct: 289 TDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTE 325
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 5/236 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K QLV E +L KG + L Y+ +I L K V V M +G+ PD ++
Sbjct: 163 KVVQLVKEMQL----KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIY 218
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
+LI G+ A LF M + E P+S + A I G S G V +K + I
Sbjct: 219 TTLIDGFCKLGNTQAAYKLFSEM-EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF + TY +LI G K + + +M+ +G+ P++ + +GLC +LD
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L + G ++N + +V C+ G + + + +E + + P+ + +
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITY 393
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 71/255 (27%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ N A +F+ MEA+ I PDS F++LIC SG VV A LF M+
Sbjct: 218 YTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277
Query: 171 SSEEYKPNSKTYDAFISGFSSLGN-----------------------------------V 195
+ ++P+ TY A I G+ LG +
Sbjct: 278 K-KGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGEL 336
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-----------------DSV----- 233
D N+ G +N+ TY ++++G KA + D++
Sbjct: 337 DTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTL 396
Query: 234 -DRFYE------------EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
D +Y+ EM+ G+ P++ ++ GLC KL+ + LK++L G
Sbjct: 397 MDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGI 456
Query: 281 KINENMAQKLVKCYC 295
N ++K YC
Sbjct: 457 MPNAATYNSIMKQYC 471
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 1/155 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K + A + M +G++P FN L+ SG + L + M+
Sbjct: 393 YTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWML 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY++ + + N+ + Y A G + TY LI G KAR+
Sbjct: 453 E-KGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNM 511
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
++EM+ + +++G R+KL
Sbjct: 512 KEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKL 546
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS K + + VF+ G+ ++ +N L+ + G + A L M
Sbjct: 81 LTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRM---- 136
Query: 174 EYK---PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E+K P+ +Y I G+ +G + + + G N+ TY S+I K+
Sbjct: 137 EFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKV 196
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
++ EMM G+ P I +++G C
Sbjct: 197 VEGEKVLREMMKRGVFPDHVIYTTLIDGFC 226
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
T LQ + K A + + LD M++ N D Y C A GKV AM VF+
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYAKQGKVDQ---AMLVFSK 396
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG+ P++ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 454
Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
NKW A + G +N + S+I K ++ +E M+ +G+ P
Sbjct: 455 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ ++ G C K+D L ++ G K N L+ YC++ R+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 308 ETLTKCNQSPEVLLH 322
+ + SP+++ +
Sbjct: 570 KEMESSGVSPDIITY 584
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LFE+MV KPN TY+ I+G+ G +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKM 527
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K + ++ G N TY +LI+G K + ++EM S G+ P I +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+GL R+ K + G +I + ++ C+ D+ + + L
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 5/257 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G P+ +N L+ AL L +M P+ +Y I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + FLK + G + + L+ C+ GR E +
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++TK PE+ + +++ YA L ++ + M + G+ ++IC+Y
Sbjct: 325 DSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGIH-PDHYVFSILICAY 381
Query: 368 FRCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 382 AKQGKVDQAMLVFSKMR 398
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +N+LI +G + A+ L MVS KPN+ TY I+G+
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYSTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ + ++G S ++ TY ++ G + R + Y + G +
Sbjct: 557 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC + D + L K+ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 108/299 (36%), Gaps = 73/299 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------------- 157
Y +IA K Q + AM V +M G+ PD +NS++ SG
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 158 ------DVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
DVVT A +F+ M + KP TY + G+++ G +
Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGAL 352
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS------- 248
M+ + G + + LI K D + +M G+ P+
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 249 IPILEK----------------------------VLEGLCARRKLDRVKSFLKFLLGGGW 280
I IL K ++ GLC K +R + + +L G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+N ++ +C+ GRV E E+ E + + P V+ ++ +I Y L+ ++D+
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT--YNTLINGYCLAGKMDE 529
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 171 SSEEYKPNSKTYDAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
++E P+ TY I GF++LGNV I GF V+ + L
Sbjct: 79 GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNV----------IKKGFRVDAIAFTPL 128
Query: 221 IHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL--- 276
+ G R D++D M LG IP++ +L+GLC + L +
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDR 188
Query: 277 GGG 279
GGG
Sbjct: 189 GGG 191
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 9/266 (3%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+ V + +D +K N D Y CLI + + + M A+G+KPD +
Sbjct: 225 RAEGVFQQMIDNGVKPNN---DTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYG 281
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ LC+ + S ++MV + P+ ++ F S ++ G +D +
Sbjct: 282 SLL-NYLCA--LSEMHSFLDLMVENG-LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ 337
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G S NV Y +LI K D + + +M++ G+ P+I + ++ GLC K +R
Sbjct: 338 HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER 397
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
+ + +L G N L+ C +GRV E ++ + P+ ++ +
Sbjct: 398 AEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAF--SYTPL 455
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLS 353
I Y L+ R D+ E M GLS
Sbjct: 456 ISGYCLAGRTDEAEKVFDGMVSIGLS 481
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QGI P++ FN+LIC G V+ L ++M +P++ +Y ISG+ G
Sbjct: 405 MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM-EHVGVRPDAFSYTPLISGYCLAG 463
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
D K + ++ G S TY +L+HG A D + EM+ G+ P +
Sbjct: 464 RTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYN 523
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L GL ++ K ++ G K + ++ C+ VDE + ++L
Sbjct: 524 TILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSL 580
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 7/222 (3%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE--EYKPNSKTYDAFISGFSS 191
M G PD+ ++ L+ AL L +M + PN TY I G
Sbjct: 160 MPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCK 219
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
D + I G N TY LIHG L + V + E+M + G+ P
Sbjct: 220 AQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYT 279
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+L LCA L + SFL ++ G + ++ Y + G +D+ + +
Sbjct: 280 YGSLLNYLCA---LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 336
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ SP V+ + +I R+DD E +M +G++
Sbjct: 337 QHGLSPNVV--NYGALIDALCKLGRVDDAEVKFNQMINEGVT 376
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 8/281 (2%)
Query: 41 NPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLD 98
N LI L V V + + +D ++ FS+ LI+ + +A+ V + +
Sbjct: 418 NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVS 477
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
L E Y L+ + A +F M +G+ P +N+++ +
Sbjct: 478 IGLSPTEV---TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
A L+ M++S K + TY+ ++G VD K + + + G +N+ T+
Sbjct: 535 FSEAKELYLNMINSGT-KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 593
Query: 219 SLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+I LK R D++D F + + G++P++ V E L L+ S +
Sbjct: 594 IMIGALLKGGRKEDAMDLF-AAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEK 652
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G N M LV+ G + L L + N S E
Sbjct: 653 NGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 693
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 4/257 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM K G + Y LI+ + A+ V+ M A G+ P + +++LI
Sbjct: 330 LGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYV 389
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G TAL++FE M+S + PN++TY+ I GF S+G + + + AG S NV
Sbjct: 390 EGRFETALTIFEWMLSHDSL-PNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVI 448
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +IH K ++ R E M G+ ++ G KL+ S +
Sbjct: 449 TYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ G N ++ Y + +VD+ + + P ++ +I ++ ++
Sbjct: 509 VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSS--GTYNMMISGFSKTN 566
Query: 336 RLDDVEYSVGRMGKQGL 352
R+ + E G+M KQGL
Sbjct: 567 RISEAENFCGKMVKQGL 583
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 157/412 (38%), Gaps = 88/412 (21%)
Query: 44 ISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLK 102
+ R++QV +S+I TT D F + +S+ L+ L + + V L+ ++
Sbjct: 147 VKRVIQV-LSEINTTYD------FGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIR 199
Query: 103 GNESCLDEYACLIALSGKVQNVPFAM-HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
N + ++ GKVQ M H+F G PD+ + SLI +G++
Sbjct: 200 PNLFTFNAMIKILCNKGKVQEAELIMGHIF----HYGACPDTFTYTSLIIGHCKNGNLDL 255
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA--------MNKWYAANIAA----- 208
A +F+ MV + PNS TY A I+G S G ++ ++K + A
Sbjct: 256 AFEMFDRMVK-DGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314
Query: 209 ----------------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G NVQTY +LI G + F+ Y +M++ G++
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ ++ L + + + +++L N ++K +C +G + +
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAI 434
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + K SP V+ + ++I
Sbjct: 435 FDQMLKAGPSPNVITY--------------------------------------NIIIHI 456
Query: 367 YFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
YF+ + L+ +KG+ KL TY L++G+ R G S+ NEM
Sbjct: 457 YFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 32/259 (12%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++A+I + + L L W++ + GN Y +I+ K + A +
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVE--SGNVPSSGTYNMMISGFSKTNRISEAENFCG 576
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY----------------- 175
M QG+ P+ + S I +G A +F M + +
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEG 636
Query: 176 -------------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+PN TY + G G ++ + G + + Y +L+
Sbjct: 637 QAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLV 696
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K + +S + ++ M++ G P + + ++ LC + + + +L W
Sbjct: 697 GQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNS 756
Query: 283 NENMAQKLVKCYCELGRVD 301
+E + L+ + G D
Sbjct: 757 DEVVWTVLLDGLLKEGETD 775
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 6/258 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A +F + +G++P + FN+LI S ++ L + M
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ TY I G G +D + + G N T+ +LI G ++R
Sbjct: 286 ENRIY-PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRM 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS Y +M+++G+ P + + +L GLC +++ + + + G K ++ L
Sbjct: 345 DSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTL 404
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGK 349
+ YC+ G +LE +E N+ VL + F+ +I + R+ D E ++ M +
Sbjct: 405 IDGYCKEG---DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVE 461
Query: 350 QGLSFKSAEDVEMVICSY 367
G+ A MVI Y
Sbjct: 462 AGMKPDDAT-YTMVIDGY 478
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 113/273 (41%), Gaps = 7/273 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD-- 109
+ K + + + S++ LI L S L +RL K ++ N D
Sbjct: 239 IRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSR----NLDEGFRLKKTMEENRIYPDVF 294
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y+ LI K + A +F M+ +G++P+ F +LI S + +A++ + M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQM 354
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ KP+ Y+ ++G +G+V+ K G + TY +LI G K D
Sbjct: 355 LTMG-VKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGD 413
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+S + M G++ ++ G C ++ + L+ ++ G K ++
Sbjct: 414 LESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ YC+ G V + L+ + P V+ +
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 1/184 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV +V A + M+ G+KPD + +LI GD+ +A+ + + M + E ++
Sbjct: 375 KVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM-NEEGVVLDN 433
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A ISGF G V + + AG + TY +I G K + + +E
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G P + ++ GLC + ++ L+ +L G ++ L++ +C+ G+
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553
Query: 300 VDEL 303
++L
Sbjct: 554 AEDL 557
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM+ + M G+KPD ++N+L+ GDV A L + M KP+ TY I
Sbjct: 347 AMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM-KMVGMKPDKITYTTLI 405
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G++++ + G ++ + +LI G + +R EM+ G+
Sbjct: 406 DGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMK 465
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P V++G C + + LK + G K L+ C+ G++
Sbjct: 466 PDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANML 525
Query: 307 LETLTKCNQSPE 318
LE + +P+
Sbjct: 526 LEAMLNLGVTPD 537
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 6/258 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A +F + +G++P + FN+LI S ++ L + M
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ TY I G G +D + + G N T+ +LI G ++R
Sbjct: 286 ENRIY-PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRI 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS Y +M+++G+ P + + +L GLC +++ + + + G K ++ L
Sbjct: 345 DSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTL 404
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGK 349
+ YC+ G +LE +E N+ VL + F+ +I + R+ D E ++ M +
Sbjct: 405 IDGYCKEG---DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVE 461
Query: 350 QGLSFKSAEDVEMVICSY 367
G+ A MVI Y
Sbjct: 462 AGMKPDDAT-YTMVIDGY 478
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 113/273 (41%), Gaps = 7/273 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD-- 109
+ K + + + S++ LI L S L +RL K ++ N D
Sbjct: 239 IRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSR----NLDEGFRLKKTMEENRIYPDVF 294
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y+ LI K + A +F M+ +G++P+ F +LI S + +A++ + M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM 354
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ KP+ Y+ ++G +G+V+ K G + TY +LI G K D
Sbjct: 355 LTMG-VKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGD 413
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+S + M G++ ++ G C ++ + L+ ++ G K ++
Sbjct: 414 LESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ YC+ G V + L+ + P V+ +
Sbjct: 474 VIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 10/267 (3%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQL-VLEWRLDKML-KGNESCLDEY 111
++K T++ I+ F++ LI L K+ +L V E D+M +G +
Sbjct: 279 RLKKTMEENRIYP---DVFTYSVLIHGLC----KEGRLDVAEQLFDEMQQRGLRPNGITF 331
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI + + + AM+ + M G+KPD ++N+L+ GDV A L + M
Sbjct: 332 TALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM-R 390
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
KP+ TY I G+ G++++ + G ++ + +LI G +
Sbjct: 391 MVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVR 450
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+R EM+ G+ P V++G C + + LK + G K L+
Sbjct: 451 DAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLM 510
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPE 318
C+ G++ LE + +P+
Sbjct: 511 NGLCKQGQMKNANMLLEAMLNLGVTPD 537
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV +V A + M G+KPD + +LI GD+ +A+ + + M + E ++
Sbjct: 375 KVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM-NEEGVVLDN 433
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A ISGF G V + + AG + TY +I G K + + +E
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKE 493
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G P + ++ GLC + ++ L+ +L G ++ L++ +C+ G+
Sbjct: 494 MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553
Query: 300 VDEL 303
++L
Sbjct: 554 AEDL 557
>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
Length = 574
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 7/357 (1%)
Query: 65 FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
N + +++ LI + P+++ +L+ L++ + + L+ K +
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
V A V ME G++PD+ +N++ + G+ V A S + E MV E+ KPN +T
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ G+ G V ++ N+ + SLI+G ++ D D +D M
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + V+ + +++ K ++ G K + + L K Y +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKGPKK 383
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
EE LETL P V++ F+ +I + + +DD +M K G+S + + E
Sbjct: 384 AEELLETLI-VESRPNVVI--FTTVISGWCSNGSMDDAMRVFNKMCKFGVS-PNIKTFET 439
Query: 363 VICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++ Y + + L ++G K +T+ L +R AGL+ + + IN +K
Sbjct: 440 LMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P +AQ V + + G+ L Y L+A + + + +E G K
Sbjct: 56 IERGRPHEAQTVFKTLAET---GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK 112
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
DS FN++I A SG++ A+ + + P + TY+ I G+ G + ++
Sbjct: 113 LDSIFFNAVINAFSESGNMEDAVQAL-LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 201 WYAANIAAG---FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N++T+ L+ K + + ++M G+ P +
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 258 GLCARRKLDRVKSFL--KFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + R +S + K ++ K N +V YC GRV
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRV 276
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 42/389 (10%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ F+++ LI L + + L R+ ++KG + L Y ++ K ++
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRM--VVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + ME I+P ++N++I A +V AL+LF M ++ +PN TY++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSL 297
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I + G ++ + I + NV T+ +LI +K ++ Y+EM+ I
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I ++ G C +LD K + ++ N L+K +C+ RVDE E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 306 QLETLTK-----CNQSPEVLLHFF--------SGIIRLYALSDRL--DDVEYSVGRMGKQ 350
+++ + L+H F + I+ +SD + D + YS+
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL---D 474
Query: 351 GLSFKSAEDVEMVICSYFR------------------CAA---YDRLDLFLDHIKGSYKL 389
GL + +V+ Y + C A D DLF K
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY +++G+ R GL + D++ EMK
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMK 563
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 9/298 (3%)
Query: 60 DSVDIFA--FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLI 115
D+V++F S F + L S+ K + L L + ++ G L Y+ LI
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEE 174
+ + A+ V M G +PD NSL+ C G+ ++ A+SL MV
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG-FCHGNRISDAVSLVGQMVEMG- 181
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y+P+S T++ I G + G ++ TY +++G K D D
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++M I P + I +++ LC + ++ + + G + N L++C
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C GR + L + + +P V+ FS +I + +L + E M K+ +
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A VF M + G+ PD ++ L+ +G V TAL +FE +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ 493
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY+ I G G V+ + + G NV TY +++ G +
Sbjct: 494 RSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + EM G +P
Sbjct: 553 EEADALFREMKEEGPLP 569
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 126/290 (43%), Gaps = 8/290 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V T M A+G PD ++ SLI +G V A +F+ M+ + P++ TY I
Sbjct: 557 AYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE-KGCAPDALTYGTII 615
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
FS +GNV+A + +G + Y SL+ G +K D Y+ M++ GI
Sbjct: 616 QNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 675
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK--LVKCYCELGRVDELE 304
P+ ++ GL K DR S K +L ++ + L+ + GRV E
Sbjct: 676 PNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKD-EVPPTLVSYTILIDGLGKAGRVSEAF 734
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
Q + + PE H ++ +I A + R+ + + V M K G++ + +I
Sbjct: 735 SQFQEMIDRGIIPEC--HTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVN-PDVQAYSALI 791
Query: 365 CSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
+ D D+F + +K TY L G+R AG + L++V
Sbjct: 792 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAV 841
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++ V A V+ M A GIKP++ FN L+ G A SLF+ M+ +E P
Sbjct: 655 KLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTL 714
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I G G V + I G TY SLI+ KA + E+
Sbjct: 715 VSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVED 774
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ LG+ P + ++ GL +D + ++ G NE + L + + GR
Sbjct: 775 MVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834
Query: 300 VDELE 304
+LE
Sbjct: 835 ALDLE 839
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 2/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L VP A HVF SM +G PD+ + ++I G+V A + E+M
Sbjct: 576 YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMA 635
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ Y++ + G+ L VD Y +A+G N T+ L+HG K
Sbjct: 636 KS-GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 694
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVL-EGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++EM+ +P + +L +GL ++ S + ++ G +
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTS 754
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + GR+ E ++ +E + K +P+V
Sbjct: 755 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDV 784
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 3/215 (1%)
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
P H+ + + +PD ++ S+I +GD+ T + E M+++ P++ Y
Sbjct: 106 PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAG-CIPDAAAYFV 164
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I LG VD + + +G + T+ +LI D Y EM+ G
Sbjct: 165 LIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P + + + ++ LC K+D + ++ + L+ YC+LGRVD+
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ L + +C+ P++ ++ ++ ++ ++RLDD
Sbjct: 285 KLLLQMVECDNFPDI--QTYNILVAGFSRANRLDD 317
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 3/225 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F ++ G P+ + ++I L +G + L FE M S P TY I
Sbjct: 382 ACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM-SGSSCVPTRTTYTVVI 440
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + K + + G + TY +LI G KA D + + M++ G
Sbjct: 441 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 500
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ ++ G C ++ K + + G + + L+ Y GR +E +
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L +T +P+V+L ++ +I L + R+ + + M ++G
Sbjct: 561 LTEMTARGCAPDVIL--YTSLIDLLFSTGRVPEARHVFDSMIEKG 603
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 2/186 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M G+ PD N ++ + + A+ LF + + S +P +Y+ I
Sbjct: 4 ALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELF-LEMPSMGCEPTIVSYNTVI 62
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG +S+ +D K++ + I G +V + +LIHG KA + +
Sbjct: 63 SGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FR 121
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + V+ G C LD L+ +L G + L+ C+LGRVDE E
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181
Query: 307 LETLTK 312
E + K
Sbjct: 182 FERMRK 187
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 105/244 (43%), Gaps = 9/244 (3%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y L+A + + A+ +F + + G KP++A + ++I + + A + F+
Sbjct: 299 IQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFD 358
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + +Y I G + +D + + AG S NV Y ++I G LKA
Sbjct: 359 EAL-------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKA 411
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + +E+M +P+ V++GLC + L + ++ G +
Sbjct: 412 GRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 471
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L+ + + ++DE + L+ + + PE + I+ + D +++ + + +M
Sbjct: 472 TTLIDGFSKASKMDEARKLLDVML--TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 529
Query: 348 GKQG 351
++G
Sbjct: 530 RERG 533
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 17/233 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ V A +F M G D F +LI A G + A L+ M+
Sbjct: 162 YFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMI 221
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y+P + D+ I G VD N+ Y +A + + Y SL+ G K
Sbjct: 222 E-RGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRV 280
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +M+ P I ++ G +LD K L G K N +
Sbjct: 281 DDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTI 340
Query: 291 VKCYCELGRVDE----LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
++ + R++E +E L+ ++ ++ +I+ A S R+D+
Sbjct: 341 IQGLYDAQRMEEAKAFFDEALDVIS------------YTTVIKGLADSKRIDE 381
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ + M A G PD+A + LI G V A LFE M
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + T+ I S+ G +D + Y I G+ ++ +SLI KA
Sbjct: 187 KSGCLG-DYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKV 245
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
D + Y+ +++ + S +++G C KL RV LK LL
Sbjct: 246 DEANEIYQTVVAKKVATSRVAYNSLMDGYC---KLGRVDDGLKLLL 288
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 26/310 (8%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYK 176
+G++++ + F M P + +I LC ++ A +FE MV +
Sbjct: 411 AGRIED---GLKNFEDMSGSSCVPTRTTYTVVIDG-LCKAQMLPDACKVFEQMVQ-KGCV 465
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P++ TY I GFS +D K + G TY S++HG K +
Sbjct: 466 PDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEV 525
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+M G P + I +L ++ + + L + G + + L+
Sbjct: 526 IAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFS 585
Query: 297 LGRVDELEEQLETLTKCNQSPEVL-----LHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
GRV E +++ + +P+ L + FS I + A + L+ + S +G
Sbjct: 586 TGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS--GVGPDC 643
Query: 352 LSFKSAED----VEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
++ S D +E V ++ YDR+ + K T++ L+ G + G +
Sbjct: 644 FAYNSLMDGYVKLERVDQAF---GVYDRM------VASGIKPNAVTFNVLMHGLFKDGKT 694
Query: 408 GKLDSVINEM 417
+ S+ EM
Sbjct: 695 DRAFSLFKEM 704
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 99 KMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ML+ +E L Y LI GK V A F M +GI P+ + SLI + +
Sbjct: 703 EMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKA 762
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A L E MV P+ + Y A I+G VD + + G + N T
Sbjct: 763 GRIPEAKKLVEDMVKL-GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVT 821
Query: 217 YESLIHG---SLKARDFDSVDRFYEEMMSL 243
Y+ L G + +A D ++V + + + +++
Sbjct: 822 YKVLRRGFRAAGRALDLEAVKQHFSQGVAM 851
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G +V +++G KAR D + EM S+G P+I V+ GL + K+D
Sbjct: 15 GLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEA 74
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
F ++ G + + L+ +C+ G+ L K P+V L ++ +I
Sbjct: 75 YKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-RFRPDVFL--YTSVI 131
Query: 329 RLYALSDRLD 338
Y + LD
Sbjct: 132 HGYCKAGDLD 141
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY I
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYSTLI 405
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 465
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL + ++L + + +++ C+ G+V++ E
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
L+ SP V+ + SG R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCR 550
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 4/228 (1%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I K +++ A+++FT M+ +GI+PD ++SLI +CLC
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI-SCLC 304
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N L+ + + D + + + P +L +
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++N++I + AL+LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +P+ TY + IS + G ++ + I + NV T+ +LI +K
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQ 426
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V M +F M +G+ ++ + +LI + D A +F+ MV
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY+ + G G + + + ++ TY +I G KA
Sbjct: 461 SVGVH-PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + + G+ P++ ++ G C + + S LK + G N L
Sbjct: 520 EDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ G + E ++ + C
Sbjct: 580 IRARLRDGDREASAELIKEMRSC 602
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I L G +N + AM VF ++ ++PD +N +I +G V LF +S
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF-CNLSL 531
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ PN Y+ ISGF G+ + + G N TY +LI L+ D ++
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 592 SAELIKEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 631
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
T LQ + K A + + LD M++ N D Y C A GKV AM VF+
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYANQGKVDQ---AMLVFSK 396
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG+ P++ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 454
Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
NKW A + G +N + S+I K ++ +E M+ +G+ P
Sbjct: 455 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ ++ G C K+D L ++ G K N L+ YC++ R+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 308 ETLTKCNQSPEVLLH 322
+ + SP+++ +
Sbjct: 570 KEMESSGVSPDIITY 584
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + P+ + I
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PDHYVFSILI 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+++ G VD ++ G + N TY ++I K+ + ++E+M+ G+
Sbjct: 379 CAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC K +R + + +L G +N ++ +C+ GRV E E+
Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
E + + P V+ ++ +I Y L+ ++D+
Sbjct: 499 FELMVRIGVKPNVIT--YNTLINGYCLAGKMDE 529
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LFE+MV KPN TY+ I+G+ G +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKM 527
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K + ++ G N TY +LI+G K + ++EM S G+ P I +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+GL R+ K + G +I + ++ C+ D+ + + L
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +N+LI +G + A+ L MVS KPN+ TY I+G+
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYSTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ + ++G S ++ TY ++ G + R + Y + G +
Sbjct: 557 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC + D + L K+ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 99/257 (38%), Gaps = 5/257 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G P+ +N L+ AL L +M P+ +Y I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + FLK + G + + L+ C+ GR E +
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++TK PE+ + +++ YA L ++ + M + G+ ++IC+Y
Sbjct: 325 DSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGIH-PDHYVFSILICAY 381
Query: 368 FRCAAYDRLDLFLDHIK 384
D+ L ++
Sbjct: 382 ANQGKVDQAMLVFSKMR 398
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 119/309 (38%), Gaps = 16/309 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IA K Q + AM V +M G+ PD +NS++ SG A+ + M
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM- 292
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY + G K + + G + TY +L+ G
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P + ++ + K+D+ + G N +
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I ++ + E + M +
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIV--YNSLIHGLCTCNKWERAEELILEMLDR 470
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G+ F S D C R ++ LF ++ K TY+ L+ GY
Sbjct: 471 GICLNTIFFNSIIDSH---CKEGRVIESEK--LFELMVRIGVKPNVITYNTLINGY---C 522
Query: 406 LSGKLDSVI 414
L+GK+D +
Sbjct: 523 LAGKMDEAM 531
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 171 SSEEYKPNSKTYDAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
++E P+ TY I GF++LGNV I GF V+ + L
Sbjct: 79 GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNV----------IKKGFRVDAIAFTPL 128
Query: 221 IHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL--- 276
+ G R D++D M LG IP++ +L+GLC + L +
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDR 188
Query: 277 GGG 279
GGG
Sbjct: 189 GGG 191
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 4/241 (1%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+LKG + + Y L+ + ++F M +G+ PD VFN+LI A G +
Sbjct: 285 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMM 344
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
+L +FE M + + P+ T+ IS F LG +D + + I G + Y
Sbjct: 345 DKSLLMFEDM-TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 403
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
LI G RD +M+S GI P I ++ LC ++ K + ++
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 463
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G + N LV YC +G + E L+++ P++ + ++ ++ Y R+D
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI--YTYNTLVDGYCKHGRID 521
Query: 339 D 339
D
Sbjct: 522 D 522
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + + VF + G+ PD +N+LI G+V A LF M
Sbjct: 121 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM- 179
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY + I+G +D + + AG N TY LIHG + +
Sbjct: 180 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMW 239
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R ++EM S ++P + + LC ++ + ++ G K + L
Sbjct: 240 KESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL 299
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y G + ++ + P+ H F+ +I YA +D M KQ
Sbjct: 300 LHGYATAGCIAGMDNLFNVMVCEGVVPD--RHVFNTLINAYARLGMMDKSLLMFEDMTKQ 357
Query: 351 GLS 353
G++
Sbjct: 358 GVN 360
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 12/260 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI---ALSGKVQNVPFAM 128
++ +LI L ++ KA+ VL + ++ N Y CLI + SG + ++
Sbjct: 190 TYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNM---TYNCLIHGYSTSGMWKE---SV 243
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF M + + PD NS + A G + A +F+ MV KP+ +Y A + G
Sbjct: 244 RVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHG 302
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+++ G + M+ + + G + + +LI+ + D +E+M G+ P
Sbjct: 303 YATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPD 362
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
I V+ C +LD ++ G + + L++ C + + +E +
Sbjct: 363 IITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELIS 422
Query: 309 TLTKCNQSPEVLLHFFSGII 328
+ P + FF+ II
Sbjct: 423 DMLSKGIPPPC-IKFFTSII 441
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G +P+ FNSL+ G++ A+ L + M S +P+ TY+ + G+ G +D
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM-ESVGVEPDIYTYNTLVDGYCKHGRIDD 522
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + ++ +Y ++HG +AR + EM+ G+ SI VL
Sbjct: 523 ALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLG 582
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC D L+ L K + +++ ++GR E +E ++ P
Sbjct: 583 GLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVP 642
Query: 318 EVLLH 322
+L +
Sbjct: 643 TILTY 647
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 162 ALSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A+ LF+ M + E P TY+ I+ + D + + G +V +Y +
Sbjct: 99 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G K + D + +M GI+P++ ++ GLC +++D+ + L+ ++G G
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218
Query: 280 WKINENMAQKLVKCYCELG 298
+ N L+ Y G
Sbjct: 219 VRPNNMTYNCLIHGYSTSG 237
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM F M G+ PD+AV++ LI D+V A L M+S P K + + I
Sbjct: 382 AMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSII 441
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G V I G N+ T+ SL+ G + + M S+G+
Sbjct: 442 NNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVE 501
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
P I +++G C ++D + + +L
Sbjct: 502 PDIYTYNTLVDGYCKHGRIDDALTLFRDML 531
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 4/241 (1%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+LKG + + Y L+ + ++F M +G+ PD VFN+LI A G +
Sbjct: 356 VLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMM 415
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
+L +FE M + + P+ T+ IS F LG +D + + I G + Y
Sbjct: 416 DKSLLMFEDM-TKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 474
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
LI G RD +M+S GI P I ++ LC ++ K + ++
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 534
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G + N LV YC +G + E L+++ P++ + ++ ++ Y R+D
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDI--YTYNTLVDGYCKHGRID 592
Query: 339 D 339
D
Sbjct: 593 D 593
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 103/282 (36%), Gaps = 38/282 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + + VF + G+ PD +N+LI G+V A LF M
Sbjct: 192 YNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM- 250
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY + I+G +D + + AG N TY LIHG + +
Sbjct: 251 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMW 310
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK--------- 281
R ++EM S ++P + + LC ++ + ++ G K
Sbjct: 311 KESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGAL 370
Query: 282 --------------------------INENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ ++ L+ Y LG +D+ E +TK
Sbjct: 371 LHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGV 430
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
+P+++ FS +I + RLDD M G+ +A
Sbjct: 431 NPDIIT--FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTA 470
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 12/260 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI---ALSGKVQNVPFAM 128
++ +LI L ++ KA+ VL + ++ N Y CLI + SG + ++
Sbjct: 261 TYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNM---TYNCLIHGYSTSGMWKE---SV 314
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF M + + PD NS + A G + A +F+ MV KP+ +Y A + G
Sbjct: 315 RVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHG 373
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+++ G + M+ + + G + + +LI+ + D +E+M G+ P
Sbjct: 374 YATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPD 433
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
I V+ C +LD ++ G + + L++ C + + +E +
Sbjct: 434 IITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELIS 493
Query: 309 TLTKCNQSPEVLLHFFSGII 328
+ P + FF+ II
Sbjct: 494 DMLSKGIPPPC-IKFFTSII 512
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G +P+ FNSL+ G++ A+ L + M S +P+ TY+ + G+ G +D
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSM-ESVGVEPDIYTYNTLVDGYCKHGRIDD 593
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + ++ +Y ++HG +AR + EM+ G+ SI VL
Sbjct: 594 ALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLG 653
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC D L+ L K + +++ ++GR E +E ++ P
Sbjct: 654 GLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVP 713
Query: 318 EVLLH 322
+L +
Sbjct: 714 TILTY 718
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 162 ALSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A+ LF+ M + E P TY+ I+ + D + + G +V +Y +
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 229
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G K + D + +M GI+P++ ++ GLC +++D+ + L+ ++G G
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289
Query: 280 WKINENMAQKLVKCYCELG 298
+ N L+ Y G
Sbjct: 290 VRPNNMTYNCLIHGYSTSG 308
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM F M G+ PD+AV++ LI D+V A L M+S P K + + I
Sbjct: 453 AMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSII 512
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G V I G N+ T+ SL+ G + + M S+G+
Sbjct: 513 NNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVE 572
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
P I +++G C ++D + + +L
Sbjct: 573 PDIYTYNTLVDGYCKHGRIDDALTLFRDML 602
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 153/354 (43%), Gaps = 17/354 (4%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQN 123
F ++ +++AL++ L AQ + E +M+K G + Y L+ KV
Sbjct: 5 GFWPNRITYNALLSGLCNGGRMSDAQALYE----RMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTY 182
+ A+ +F +G PD +N+LI C D + A + + MV SE P+ TY
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALING-FCKADKLDEAQRILQRMV-SENLVPDVVTY 118
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMM 241
++ ++G G VD + GFS NV TY +LI G + R + + ++
Sbjct: 119 NSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL 175
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P +P +++GL +++ L+ G + + + C+ GRV+
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ L+ + + P+V+ H + +I R+D+ E + M +G S +A
Sbjct: 236 DALLMLKDMDEKGCVPDVVSH--NAVINGLCKEKRVDEAEVLLSGMEAKGCS-PNAISFN 292
Query: 362 MVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+IC R + + + F + +K K TY+ LV G +A G++ I
Sbjct: 293 TLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAI 346
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G P+ +N+L+ G + A +L+E M+ + Y P+ TY+ + GF +G
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG-YSPDVVTYNTLLHGFCKVG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D K + + GF +V TY +LI+G KA D R + M+S ++P +
Sbjct: 60 ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC-ELGRVDELEEQLETLTK 312
++ GLC ++D + ++ G+ N L+ C EL V E + ++ K
Sbjct: 120 SLVNGLCKNGRVDEARM---LIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLK 176
Query: 313 CNQSPEV 319
PEV
Sbjct: 177 QGYEPEV 183
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A + + MEA+G P++ FN+LIC +G A++ F+ M+ KP
Sbjct: 265 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK-RGVKPTV 323
Query: 180 KTYDAFISGFSSL---GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
TY+ + G G + + A I G +V TY +LI G KA D R
Sbjct: 324 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRL 383
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
M + G IP++ ++ GLC K+D
Sbjct: 384 LGAMEAKGCIPNVYTYNSLISGLCGLEKVD 413
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S +A+I L + +A+++L K N + C +GK + AM F
Sbjct: 255 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK---AMTTF 311
Query: 132 TSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
M +G+KP +N L+ C G + A++LF+ M+ P+ TY A I G
Sbjct: 312 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDG 370
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G +D + A A G NV TY SLI G D + M+ G +P
Sbjct: 371 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVP 429
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 9/190 (4%)
Query: 37 VSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLE 94
V S N +I+ L + V + + L ++ + + S++ LI ++ KKA +
Sbjct: 253 VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFK 312
Query: 95 WRLDKMLKGN---ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
L + +K + L + C G+++ A+ +F +M +G PD +++LI
Sbjct: 313 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKE---AITLFDAMIEKGRVPDVVTYSALID 369
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+G + A L M ++ PN TY++ ISG L VD + + A + G
Sbjct: 370 GLGKAGKLDDARRLLGAM-EAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCV 428
Query: 212 VNVQTYESLI 221
+ TY ++I
Sbjct: 429 PDTITYGTII 438
>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 481
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 9/253 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + L S KA +V E +++++ G E + Y L + +
Sbjct: 76 LQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEEL--GVERTIKSYDVLFKVILRRGRYMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M ++GI+P FN +I SG V TA FE M S + P+ TY+ I
Sbjct: 134 AKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDM-KSRDITPDVITYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + ++ K++ V T+ +LI G + D R EEM GI
Sbjct: 193 NGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMKGFGIK 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ L GLC K+ +S LK ++ +N + +L+ C+ G +D +
Sbjct: 253 PNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAAD 312
Query: 306 QLETLTKCNQSPE 318
L+ + + + E
Sbjct: 313 VLKAMIRLSVPTE 325
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 10/314 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y + A+ + A+ + M GI P A N LI A C SG + AL +F M
Sbjct: 123 YITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREM 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+S TY I+G LG + + + S V TY SLIHG +++D
Sbjct: 183 -PNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKD 241
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
DS R EEM S GI P++ +++G C R L ++ N
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLDDVEYSV 344
LV C+ G++ E E L+ + P+ ++ F I + + ++ LD E +
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLD--EMVL 359
Query: 345 GRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRR 403
G + L++ + ++ +R L+L + T+D LV +
Sbjct: 360 GGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCN 419
Query: 404 AGLSGKLDSVINEM 417
G K +++EM
Sbjct: 420 KGDLHKAAHLVDEM 433
>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 632
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 5/312 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI K++N+ A +V M A G++PD FN++ A +G A ++
Sbjct: 213 LKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMI- 271
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + KPN +T ISG+ G V ++ G N+ SL++G +
Sbjct: 272 LEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDM 331
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D D VD + M I P + ++ L++ K +L G K + +
Sbjct: 332 MDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAY 391
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L K Y +++ EE L +TK P V++ F+ +I + R+D+ +M
Sbjct: 392 SILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVI--FTTVISGWCSVGRMDNAMRVFDKM 449
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY-KLRRATYDFLVAGYRRAGL 406
G+ G+S + + E +I Y + + L ++ + + +++T + +R AG
Sbjct: 450 GEFGVS-PNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGF 508
Query: 407 SGKLDSVINEMK 418
+ +++ +K
Sbjct: 509 KERAKTLLRTVK 520
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 85/201 (42%), Gaps = 5/201 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK Q A+ +F ++ G +P A + +L+ A L + + +V ++ KP
Sbjct: 85 SGKPQE---AIVIFQNLIEGGHQPSLATYTTLLNA-LTTQKYFKPIHSIVSLVEEKQMKP 140
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+S ++A I+ F+ GN++ K +G + TY +LI G A D +
Sbjct: 141 DSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLL 200
Query: 238 EEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M + G + P++ ++ LC + + + + G + + + Y +
Sbjct: 201 DLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQ 260
Query: 297 LGRVDELEEQLETLTKCNQSP 317
G+ + E + + + + P
Sbjct: 261 NGKTAQAEAMILEMQRNSLKP 281
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 3/193 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ CLI+ K +P A+ +F M +G KPD FNSLI LC D + AL L M
Sbjct: 456 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG-LCEVDEIKHALWLLRDM 514
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+S E N+ TY+ I+ F G + K + G ++ TY SLI G +A +
Sbjct: 515 IS-EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGE 573
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +E+M+ G++PS ++ GLC ++ F K ++ G +
Sbjct: 574 VDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 633
Query: 290 LVKCYCELGRVDE 302
L+ C GR+++
Sbjct: 634 LINGLCRAGRIED 646
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 3/249 (1%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L LE D KG + + Y L+ K+ + A ++ M A G+KP++ FN LI
Sbjct: 401 LALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLI 460
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
A + A+ +F M + KP+ T+++ ISG + + I+ G
Sbjct: 461 SAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 519
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N TY +LI+ L+ + + EM+ G + +++GLC ++D+ +S
Sbjct: 520 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARS 579
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ +L G + L+ C G V+E E + + +P+++ F+ +I
Sbjct: 580 LFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT--FNSLING 637
Query: 331 YALSDRLDD 339
+ R++D
Sbjct: 638 LCRAGRIED 646
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 118/314 (37%), Gaps = 16/314 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ + M G PD+ FN +I LC D + + +
Sbjct: 249 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRM 307
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY ++G +G VDA + I SV + +LIHG +
Sbjct: 308 LIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFY-RIPKPTSV---IFNTLIHGFVTHGRL 363
Query: 231 DSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M+ S GI+P + ++ G + + L+ + G K N
Sbjct: 364 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTI 423
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV +C+LG++DE L ++ P + F+ +I + R+ + M +
Sbjct: 424 LVDGFCKLGKIDEAYNLLNEMSADGLKPNTV--GFNCLISAFCKEHRIPEAVEIFREMPR 481
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+G DV D + L D I TY+ L+ + R G
Sbjct: 482 KG----CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 537
Query: 406 LSGKLDSVINEMKF 419
+ ++NEM F
Sbjct: 538 EIKEARKLVNEMVF 551
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 8/299 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A + M +G PD + L+ G V A LF + KP S
Sbjct: 293 KFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPTS 347
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ I GF + G +D + + + G +V TY SLI+G K
Sbjct: 348 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLR 407
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M + G P++ +++G C K+D + L + G K N L+ +C+
Sbjct: 408 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEH 467
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ E E + + P+V + F+ +I D + + + M +G+ +
Sbjct: 468 RIPEAVEIFREMPRKGCKPDV--YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 525
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ R + L + + L TY+ L+ G RAG K S+ +M
Sbjct: 526 YNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 13/250 (5%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S + P T+ + ++ VD+ G N Y++LIH K +
Sbjct: 204 SRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 263
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ EEM +G +P V+ GLC +++ + +L G+ ++ L+
Sbjct: 264 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLM 323
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C++GRVD ++ + K P ++ F+ +I + RLDD + + M
Sbjct: 324 NGLCKIGRVDAAKDLFYRIPK----PTSVI--FNTLIHGFVTHGRLDDAKAVLSDMVT-- 375
Query: 352 LSFKSAEDV---EMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
S+ DV +I Y++ L++ D K +Y LV G+ + G
Sbjct: 376 -SYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKI 434
Query: 408 GKLDSVINEM 417
+ +++NEM
Sbjct: 435 DEAYNLLNEM 444
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 12/199 (6%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKV 121
D++ FNS LI+ L K L W L M+ +G + Y LI +
Sbjct: 487 DVYTFNS-------LISGLCEVDEIKHAL---WLLRDMISEGVVANTVTYNTLINAFLRR 536
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+ A + M QG D +NSLI +G+V A SLFE M+ + P+S +
Sbjct: 537 GEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLR-DGLVPSSIS 595
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I+G G V+ ++ + G + ++ T+ SLI+G +A + + ++
Sbjct: 596 CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 655
Query: 242 SLGIIPSIPILEKVLEGLC 260
+ GI P ++ LC
Sbjct: 656 AEGIPPDTVTYNTLMSWLC 674
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 2/209 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI ++Q + A + M++ PD ++ LI A LC ++ A L +
Sbjct: 295 YNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILI-AGLCRAKRLSEARDLLGTL 353
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++ PN +Y+ I GFS V+ + + + AG +V TY +LI G A
Sbjct: 354 RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGR 413
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ EEM+ I+P +P+ V+ GLC +LD + ++ G + N +
Sbjct: 414 ASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNS 473
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ C+ GR+ + + +++ +T+ SP+
Sbjct: 474 LIYGLCKTGRLCDAKLRVKEMTERGCSPD 502
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 134/343 (39%), Gaps = 40/343 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I+ + + A VF SM A G +P+ AV+NSLI LC + L +
Sbjct: 436 YSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYG-LCKTGRLCDAKLRVKEM 494
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY I G D Y ++ G ++ +T +++ SL R
Sbjct: 495 TERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEIS-ETSCNVVIASL--RCL 551
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R +++ G P+ V+E LC L + L+ ++G G K + + L
Sbjct: 552 EQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDAL 611
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV-----LLH----------------------- 322
V C + LE + + P V LL+
Sbjct: 612 VGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTS 671
Query: 323 ------FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
++ G+I Y+ D++++ + + K +S ++ FR +
Sbjct: 672 CFPDELWYVGLIAAYSNQDQVEEARNVLQEL-KSKWGIQSIVAYNTLLKGLFRTRNLQMV 730
Query: 377 -DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+L + + + + AT++ L+ G+ R G + + V++EMK
Sbjct: 731 YELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMK 773
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 13/236 (5%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWR-LDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F++D LI L +A+ + E R L L+ + C Y LI K V A
Sbjct: 328 FTYDILIAGLC-----RAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M G PD +++LI +G A S E MV ++ P Y + IS
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVG-KKILPKVPVYSSVIS 441
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G +DA + + + +A G N+ Y SLI+G K +EM G P
Sbjct: 442 GLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSP 501
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRV 300
++ GLC + D L G +I+E N+ ++C + RV
Sbjct: 502 DGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRV 557
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 16/310 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + A ++ M +G++P L+ A SG++ AL FE M
Sbjct: 128 YGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMS 187
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P + T+ I G VD +Y + N TY +I+G +KA
Sbjct: 188 SI----PCAATWTILIDGLFRAIRVDEAC-YYFEEMKHTAIPNNWTYTVVINGLVKAGKV 242
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+R +EM +P++ V+ G C + + L+ + G++ + L
Sbjct: 243 AEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTL 298
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMG 348
+ +C L +D E LE + + P++ + +G+ R + RL + +G +
Sbjct: 299 IHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCR----AKRLSEARDLLGTLR 354
Query: 349 KQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+ + +I + + A D LFL+ + TY L+ G AG +
Sbjct: 355 NEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRA 414
Query: 408 GKLDSVINEM 417
+ S + EM
Sbjct: 415 SEAHSYLEEM 424
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +N+LI + V A LF MV++ ++ P+ TY I G + G +
Sbjct: 361 PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQH-PDVVTYSTLIRGLCNAGRASEAHS 419
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + V Y S+I G +A + D+ ++ M++ G P++ + ++ GLC
Sbjct: 420 YLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLC 479
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE--------LEEQLE-TLT 311
+L K +K + G + L+ C R DE LE+ +E + T
Sbjct: 480 KTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISET 539
Query: 312 KCN 314
CN
Sbjct: 540 SCN 542
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 37/271 (13%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S+ S + +I SL+ ++AQ VL L GN YA +I K N+ A
Sbjct: 537 SETSCNVVIASLRCL--EQAQRVLRVVL---ATGNSPTAFFYATVIESLCKENNLAEARQ 591
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M GIKPD + ++L+ A V A++ E MV KP+ TY ++
Sbjct: 592 LLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGS-KPSVGTYSTLLNAL 650
Query: 190 SSLGNVDAMNK----------------WYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
G + WY IAA +S Q E AR+
Sbjct: 651 FKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAA-YSNQDQVEE--------ARNV--- 698
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+E+ S I SI +L+GL R L V L+ + + +NE L++
Sbjct: 699 ---LQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQG 755
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+C LG+ D L + K ++ F
Sbjct: 756 FCRLGQTDRAVRVLSEMKKVLTPSAAIIKFL 786
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 3/226 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y LI K + +P A+++ M+A GI P F SLI LC + AL +F M
Sbjct: 55 YGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRK-LCELNFTDKALQIFHQM 113
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ + KP++ Y I + +D ++ + +G + TY L+H KA
Sbjct: 114 IDMK-VKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACK 172
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++ + +EEM+S G P + V+ G C ++D+ S ++ L G G + ++
Sbjct: 173 WEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYST 232
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
L+ C+ R DE E E Q V F SG+ + L +
Sbjct: 233 LIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDE 278
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 9/286 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV- 160
KG+ L YA ++ K + A+ + ++ G P +++++LI LC D
Sbjct: 186 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDG-LCKHDRHD 244
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A LFE+ + + Y +FISG G +D + I AG + + +Y +
Sbjct: 245 EARELFEMAAGDVQ---DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVI 301
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+ K ++ M +P +P+ +++GLC R+++ L+ +L G
Sbjct: 302 IYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGD 361
Query: 281 KINENMA-QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + ++ C+ R+D+ L+ + + P+V+ ++ II + RLD+
Sbjct: 362 RAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVT--YTAIIDAFCKVGRLDE 419
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG 385
RM ++G + ++I Y R A D ++ + G
Sbjct: 420 ARELFQRMHERGCALDVVA-YNILIRGYCRAAKVDEAIAMIEEMAG 464
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 2/163 (1%)
Query: 113 CLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
C + + G K + V A + M G + S V S + LC D + + +
Sbjct: 333 CTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKM 392
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY A I F +G +D + + G +++V Y LI G +A
Sbjct: 393 RRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKV 452
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
D EEM GI P++ L +++GLC +++ + ++
Sbjct: 453 DEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLME 495
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 6/213 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I+ K + A V M G PD +N +I + LC + V+ E+M
Sbjct: 263 YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS-LCKDNRVSEAK--ELMD 319
Query: 171 SSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKA 227
+ E K P + G V+ + G + +V TY ++I G KA
Sbjct: 320 QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKA 379
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D ++M G +P + +++ C +LD + + + G ++
Sbjct: 380 DRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAY 439
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L++ YC +VDE +E + P V+
Sbjct: 440 NILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVV 472
>gi|326525126|dbj|BAK07833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 435
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 131/280 (46%), Gaps = 5/280 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L E+ I+L+ + ++ A ++FT + PD A++N+L+ A + SG V + F
Sbjct: 145 LPEFVVAISLASRARDPTAAANIFTD-ASSAYCPDQALYNALMSAYMHSGLVNCCVEAFH 203
Query: 168 IMVSSEE-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ PN+ +Y+ I+ F VD M + +G + TY ++I G L
Sbjct: 204 ALQRDPRCGPPNADSYNILIALFGRSLLVDHMEATLQSLDVSGQPRTIGTYNAIIAGYLT 263
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A +D ++ + EM++ G+ P +L G K+ +++ + +++
Sbjct: 264 AWMWDKMEAVFHEMIAGGVGPDTTTHLLMLRGYAHAGKIYKMELAYERAREHAGEVDMVH 323
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG-IIRLYALSDRLDDVEYSVG 345
+ ++ YC+ VD +++ E L K PE + + +IR+YA+ ++ +E +
Sbjct: 324 IRAMLCAYCKFAHVDRIQKIEELLLKLR--PEDYRPWLNVLLIRVYAVEGLVEGMERRIA 381
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG 385
+ + + + + +I +YF+C A DRL F+ +G
Sbjct: 382 EALEHNTTVTTTQVMRSIITNYFQCDAVDRLAHFVRQAEG 421
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 5/299 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ +V F++ V M GI PD+ FN+LI G + A+ LF MV ++PN
Sbjct: 140 RLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMV-KRGHEPNV 198
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I+G GN + G NV TY ++I K R + F E
Sbjct: 199 ISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSE 258
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI P++ ++ G C +L+ K ++G N LV C+ G
Sbjct: 259 MVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM 318
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V E ET+T+ P++ ++ ++ Y L +++ + M ++G + A
Sbjct: 319 VSEARLVFETMTEKGVEPDI--STYNALMDGYCLQRLMNEAKKVFEIMIRKGCA-PGAHS 375
Query: 360 VEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++I Y + D L + + TY L+ G + G + ++ EM
Sbjct: 376 YNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ALI L + K + L ++M+K G+E + Y +I K N A+ VF
Sbjct: 165 TFNALINGLCNEGKIKEAVEL---FNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVF 221
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
ME G KP+ ++++I + LC +V F + PN TY++ + GF +
Sbjct: 222 KKMEQNGCKPNVVTYSTIIDS-LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCN 280
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
LG ++ + + + N T+ L+ G K +E M G+ P I
Sbjct: 281 LGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDIST 340
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C +R ++ K + ++ G + L+ YC+ R+DE + L +
Sbjct: 341 YNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY 400
Query: 312 KCNQSPEVLLH 322
+P+ + +
Sbjct: 401 HKALNPDTVTY 411
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 24/256 (9%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + + P++ F L+ G V A +FE M + + +P+ TY+A +
Sbjct: 287 ATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETM-TEKGVEPDISTYNALM 345
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ ++ K + I G + +Y LI+G K+R D EM +
Sbjct: 346 DGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALN 405
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +++GLC + + K + G N L+ +C+ G +DE +
Sbjct: 406 PDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKL 465
Query: 307 LETLTKCNQSPEVLLH-------FFSGII--------RLYALSDRLDDVEYSVGRMG--K 349
L+++ + P ++ + F +G + +L+ R D Y+V G K
Sbjct: 466 LKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLK 525
Query: 350 QGLS------FKSAED 359
+GLS F+ ED
Sbjct: 526 EGLSDEAYDLFRKMED 541
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYK----PNSKTYDAFISGFSSLGNVDAMNKWYA 203
+++ CLC + V F + V + +K P++ T++A I+G + G + + +
Sbjct: 132 NILINCLCRLNHVD----FSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFN 187
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G NV +Y ++I+G K + +++M G P++ +++ LC R
Sbjct: 188 EMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDR 247
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ FL ++ G N +V +C LG+++E
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNE 286
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 12/219 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
+A+LV E +K ++ + S +D Y CL L + A VF M +G P +
Sbjct: 321 EARLVFETMTEKGVEPDISTYNALMDGY-CLQRLMNE------AKKVFEIMIRKGCAPGA 373
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
+N LI S + A SL M + P++ TY + G LG +
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYH-KALNPDTVTYSTLMQGLCQLGRPKEALNLFK 432
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G N+ TY L+ G K D + + M + P+I ++EG+
Sbjct: 433 EMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAG 492
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
KL+ K L G G + + ++K + G DE
Sbjct: 493 KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDE 531
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 5/181 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++F M + G P+ + L+ G + AL L + M ++ +PN Y I
Sbjct: 427 ALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSM-KEKKLEPNIVHYTILI 485
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G ++ + ++ G +++TY +I G LK D + +M G +
Sbjct: 486 EGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL 545
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++G + + ++G + +N + Q L+ +L DE+ Q
Sbjct: 546 PNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLL----DLESQDEIISQ 601
Query: 307 L 307
Sbjct: 602 F 602
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 4/207 (1%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ K + + A V M +G P+ V+N+LI + + +
Sbjct: 311 EKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEA 370
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MVS + S TY+ I G+ G D + ++ GF+VN +
Sbjct: 371 GSLNKAIEIKDLMVS-KGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGS 429
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR-VKSFLKFL 275
+ S+I FDS RF EM+ + P +L ++ GLC K + V+ +LKF
Sbjct: 430 FTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKF- 488
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
L G+ ++ + L+ CE G+++E
Sbjct: 489 LNKGFLVDTKTSNALLHGLCEAGKLEE 515
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 10/204 (4%)
Query: 112 ACLIALSGKVQNVPF-----AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
C I L+ V+ F A HV +G+ PD +F + I A G V A+ LF
Sbjct: 220 TCNILLTSLVRATEFQKCCEAFHVV----CKGVSPDVYLFTTAINAFCKGGKVEEAIELF 275
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M PN TY+ I G G D + + G + TY L+ G K
Sbjct: 276 SKM-EEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTK 334
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A+ +EM G P++ + +++ L L++ ++ G + +
Sbjct: 335 AKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSST 394
Query: 287 AQKLVKCYCELGRVDELEEQLETL 310
L+K YC+ G+ D E L+ +
Sbjct: 395 YNTLIKGYCKSGQADIAERLLKEM 418
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 3/206 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+G D +N+LI C + + A + MV + KP++ TY I G ++ V
Sbjct: 525 GRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVK-KGLKPDNYTYSILIRGLLNMNKV 583
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ +++ G +V TY +I G KA + + ++EMMS + P+ + +
Sbjct: 584 EEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHL 643
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ C +L + + G N L+K + RV+E + LE +
Sbjct: 644 IGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGL 703
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVE 341
P V ++ +I Y ++ VE
Sbjct: 704 EPNVF--HYTALIDGYGKLGQMVKVE 727
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 4/167 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
GKV+ A+ +F+ ME G+ P+ +N++I SG A E MV +P
Sbjct: 265 GGKVEE---AIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVE-RGVEP 320
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + G + + GF NV Y +LI ++A +
Sbjct: 321 TLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIK 380
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ M+S G+ + +++G C + D + LK +L G+ +N+
Sbjct: 381 DLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQ 427
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 5/238 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI SL ++ S KA + + + K L S Y LI K
Sbjct: 352 GFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSST---YNTLIKGYCKSGQA 408
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 409 DIAERLLKEMLSIGFNVNQGSFTSVICL-LCSHHMFDSALRFVGEMLLRNMSPGGGLLTT 467
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
ISG G + + + GF V+ +T +L+HG +A + R +E++ G
Sbjct: 468 LISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRG 527
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ ++ G C +KLD F+ ++ G K + L++ + +V+E
Sbjct: 528 FVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEE 585
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/329 (17%), Positives = 124/329 (37%), Gaps = 42/329 (12%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M + + P + +LI G A+ L+ + ++ + ++KT +A +
Sbjct: 446 ALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELW-LKFLNKGFLVDTKTSNALL 504
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI- 245
G G ++ + + GF ++ +Y +LI G + D F +EM+ G+
Sbjct: 505 HGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLK 564
Query: 246 ----------------------------------IPSIPILEKVLEGLCARRKLDRVKSF 271
IP + +++G C + + +
Sbjct: 565 PDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKL 624
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
++ + N + L+ YC GR+ E E + SP ++ +I+
Sbjct: 625 FDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSAT--YTSLIKGM 682
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLD--HIKGSYKL 389
++ R+++ + + M +GL + +I Y + +++ L H K +
Sbjct: 683 SIISRVEEAKLLLEEMRMEGLE-PNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP- 740
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ TY ++ GY R G + +++EM+
Sbjct: 741 NKITYTVMIGGYARDGNVTEASRLLHEMR 769
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A + M +G++P+ +
Sbjct: 652 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYT 711
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 712 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMRE 770
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 771 KGIVPDSITYKEFIYGYLK 789
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 3/212 (1%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D Y I + G + V A+ + + G+ PD ++ +I C + LF
Sbjct: 566 DNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLF 625
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M+S+ +PN+ Y+ I + G + + G S N TY SLI G
Sbjct: 626 DEMMSNN-LQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 684
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ EEM G+ P++ +++G ++ +V+ L+ + N+
Sbjct: 685 ISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT 744
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ Y G V E L + + P+
Sbjct: 745 YTVMIGGYARDGNVTEASRLLHEMREKGIVPD 776
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 15/308 (4%)
Query: 56 KTTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC- 107
K T D++D+ + FS++ALI L KK+Q LE L G +C
Sbjct: 143 KRTDDAMDMVFRRMPELGYTPDVFSYNALIKGL--CVEKKSQEALELLLHMTADGGYNCS 200
Query: 108 --LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
+ Y+ +I K V A +F M QG PD ++SLI LC +
Sbjct: 201 PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDG-LCKAQAMNKAEA 259
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+ + PN++TY+ I G+ SLG ++ + +G +V TY LI
Sbjct: 260 ILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYC 319
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K ++ M+ G P+ I +L G + L V+ L ++ G
Sbjct: 320 KIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHR 379
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ Y + G VD+ + + P+V+ +S +I + R++D Y
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVV--SYSTVIHILCKIGRVEDAVYHFN 437
Query: 346 RMGKQGLS 353
+M +GLS
Sbjct: 438 QMVSEGLS 445
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 118/268 (44%), Gaps = 5/268 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GI + FN LICA G V A++ F M +P+ +Y I +G
Sbjct: 369 MIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEM-RQNGLRPDVVSYSTVIHILCKIG 427
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + ++ G S N+ ++ SLIHG ++ V+ EM++ GI P +
Sbjct: 428 RVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMN 487
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ LC ++ + F ++ G K N L+ YC +G++DE +Q + +
Sbjct: 488 TIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSI 547
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-A 372
P+ ++ ++ Y + R++D M ++ + F A +++ F+
Sbjct: 548 GLRPDSWT--YNALLNGYFKNGRVEDALALYREMFRKDVKF-CAITSNIILHGLFQAGRI 604
Query: 373 YDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+L++ + +LR TY+ ++ G
Sbjct: 605 VAARELYMKMVDRGTQLRIETYNTVLGG 632
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 7/285 (2%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFS-SLGNV 195
G + + N LI LC G A+ + + Y P+ +Y+A I G +
Sbjct: 124 GWRVQNVTLNQLIKG-LCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQ 182
Query: 196 DAMNKWYAANIAAGF--SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+A+ G+ S NV +Y ++I G K + D ++EM+ G P +
Sbjct: 183 EALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYS 242
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++GLC + +++ ++ L+ + G N +++ YC LG+++E L+ ++
Sbjct: 243 SLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS 302
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
P+V+ + +I+ Y R + M ++G S ++ + A
Sbjct: 303 GLQPDVVTYIL--LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALI 360
Query: 374 DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
D DL I+ ++ L+ Y + G K + EM+
Sbjct: 361 DVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMR 405
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 149/377 (39%), Gaps = 44/377 (11%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F ++ +LI L ++ + KA+ +L+ DK + N Y +I + +
Sbjct: 233 GFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRT---YNIMIRGYCSLGQL 289
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + M G++PD + LI G A S+F+ MV + KPNS Y
Sbjct: 290 EEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQ-KPNSTIYHI 348
Query: 185 FISGFSSLGN-------VDAMNK---------------WYAANIAA-------------G 209
+ G+++ G +D M + YA + A G
Sbjct: 349 LLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 408
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+V +Y ++IH K + + +M+S G+ P+I ++ GLC+ + +V+
Sbjct: 409 LRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE 468
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
++ G + ++ C+ GRV E ++ + + P V+ ++ +I
Sbjct: 469 ELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVV--SYNTLID 526
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYK 388
Y ++D+ RM GL S ++ YF+ D L L+ + + K
Sbjct: 527 GYCFVGKMDESIKQFDRMVSIGLRPDSWT-YNALLNGYFKNGRVEDALALYREMFRKDVK 585
Query: 389 LRRATYDFLVAGYRRAG 405
T + ++ G +AG
Sbjct: 586 FCAITSNIILHGLFQAG 602
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 1/185 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KP+ +N+LI G + ++ F+ MVS +P+S TY+A ++G+ G V+
Sbjct: 513 GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIG-LRPDSWTYNALLNGYFKNGRVED 571
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
Y T ++HG +A + Y +M+ G I VL
Sbjct: 572 ALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLG 631
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC +D + L ++++ ++ ++GR+DE + + P
Sbjct: 632 GLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVP 691
Query: 318 EVLLH 322
V+ +
Sbjct: 692 HVITY 696
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 18/295 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V T M A+G PD ++ SLI +G V A +F+ M+ + P++ TY I
Sbjct: 302 AYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE-KGCAPDALTYGTII 360
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
FS +GNV+A + +G + Y SL+ G +K D Y+ M++ GI
Sbjct: 361 QNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 420
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-------GR 299
P+ ++ GL K DR S K +L E + LV Y L GR
Sbjct: 421 PNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE-----KEEVPPTLVS-YTILIDGLGKAGR 474
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V E Q + + PE H ++ +I A + R+ + + V M K G++ +
Sbjct: 475 VSEAFLQFQEMIDRGIIPEC--HTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVN-PDVQA 531
Query: 360 VEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
+I + D D+F + +K TY L G+R AG + L++V
Sbjct: 532 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAV 586
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++ V A V+ M A GIKP++ FN L+ G A SLF+ M+ EE P
Sbjct: 400 KLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTL 459
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I G G V + I G TY SLI+ KA + E+
Sbjct: 460 VSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVED 519
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ LG+ P + ++ GL +D + ++ G NE + L + + GR
Sbjct: 520 MVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579
Query: 300 VDELE 304
+LE
Sbjct: 580 ALDLE 584
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 8/213 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L VP A HVF SM +G PD+ + ++I G+V A + E+M
Sbjct: 321 YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMA 380
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ Y++ + G+ L VD Y +A+G N T+ L+HG K
Sbjct: 381 KS-GVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 439
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVL-EGLCARRKLDRV-KSFLKF--LLGGGWKINENM 286
D ++EM+ +P + +L +GL K RV ++FL+F ++ G +
Sbjct: 440 DRAFSLFKEMLEKEEVPPTLVSYTILIDGL---GKAGRVSEAFLQFQEMIDRGIIPECHT 496
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + GR+ E ++ +E + K +P+V
Sbjct: 497 YTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDV 529
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 3/225 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F ++ G P+ + ++I L +G + L FE M S P TY I
Sbjct: 127 ACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM-SGSSCVPTRTTYTVVI 185
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + K + + G + TY +LI G KA D + + M++ G
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 245
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ ++ G C ++ K + + G + + L+ Y GR +E +
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L +T +P+V+L ++ +I L + R+ + + M ++G
Sbjct: 306 LTEMTARGCAPDVIL--YTSLIDLLFSTGRVPEARHVFDSMIEKG 348
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/281 (19%), Positives = 109/281 (38%), Gaps = 36/281 (12%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y +I+ + + A F SM G +PD F +LI +G
Sbjct: 2 GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-----AMNKWYAANI----------- 206
L + + ++P+ Y + I G+ G++D A+ + ++
Sbjct: 62 HKLLNQAL--KRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLA 119
Query: 207 ----------------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
AG S NV Y ++I G LKA + + +EEM +P+
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRT 179
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
V++GLC + L + ++ G + L+ + + ++DE + L+ +
Sbjct: 180 TYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVM 239
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ PE + I+ + D +++ + + +M ++G
Sbjct: 240 --LTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 278
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 26/310 (8%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYK 176
+G++++ + F M P + +I LC ++ A +FE MV +
Sbjct: 156 AGRIED---GLKNFEEMSGSSCVPTRTTYTVVIDG-LCKAQMLPDACKVFEQMVQ-KGCV 210
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P++ TY I GFS +D K + G TY S++HG K +
Sbjct: 211 PDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEV 270
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+M G P + I +L ++ + + L + G + + L+
Sbjct: 271 IAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFS 330
Query: 297 LGRVDELEEQLETLTKCNQSPEVL-----LHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
GRV E +++ + +P+ L + FS I + A + L+ + S +G
Sbjct: 331 TGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS--GVGPDC 388
Query: 352 LSFKSAED----VEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
++ S D +E V ++ YDR+ + K T++ L+ G + G +
Sbjct: 389 FAYNSLMDGYVKLERVDQAF---GVYDRM------VASGIKPNAVTFNVLMHGLFKDGKT 439
Query: 408 GKLDSVINEM 417
+ S+ EM
Sbjct: 440 DRAFSLFKEM 449
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 99 KMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ML+ E L Y LI GK V A F M +GI P+ + SLI + +
Sbjct: 448 EMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKA 507
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A L E MV P+ + Y A I+G VD + + G + N T
Sbjct: 508 GRIPEAKKLVEDMVKL-GVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVT 566
Query: 217 YESLIHG---SLKARDFDSVDRFYEEMMSL 243
Y+ L G + +A D ++V + + + +++
Sbjct: 567 YKVLRRGFRAAGRALDLEAVKQHFSQGVAM 596
>gi|15221081|ref|NP_172636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200496|sp|Q9SAA6.1|PPR34_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11710, mitochondrial; Flags: Precursor
gi|4835786|gb|AAD30252.1|AC007296_13 F25C20.14 [Arabidopsis thaliana]
gi|22655109|gb|AAM98145.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|30725498|gb|AAP37771.1| At1g11710 [Arabidopsis thaliana]
gi|332190652|gb|AEE28773.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 6/298 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDA 184
A+ VF M G+ P+ FN +I +GD+ AL L M +S PN+ TY++
Sbjct: 237 ALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNS 296
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+GF G +D + + +G N +TY +L+ +A D R +EM S G
Sbjct: 297 VINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKG 356
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ + I ++ L ++ S L+ + +I+ +V+ C G V E
Sbjct: 357 LVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAV 416
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
E +++ +++ H + ++ + +L + +G M QGLS A +I
Sbjct: 417 EFQRQISEKKLVEDIVCH--NTLMHHFVRDKKLACADQILGSMLVQGLSL-DAISFGTLI 473
Query: 365 CSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
Y + +R L+++ IK + Y+ +V G + G++G ++V+N M+ +
Sbjct: 474 DGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAMEIKD 531
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 33/294 (11%)
Query: 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
S S +NPLISR+L+ S K L+ ++W L+S++ K++ E
Sbjct: 52 SSSLTNPLISRVLREFRSSPKLALEF----------YNW-----VLRSNTVAKSENRFEA 96
Query: 96 R--LDKMLKGN---ESCLDEYACLIALSG-KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+ +L G+ + L A L+++ G K+ + + S +A G PD VF+SL
Sbjct: 97 SCVMIHLLVGSRRFDDALSIMANLMSVEGEKLSPLHVLSGLIRSYQACGSSPD--VFDSL 154
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ AC +GD A + E +E + + + F+ ++ +D K Y + G
Sbjct: 155 VRACTQNGDAQGAYEVIE-QTRAEGFCVSVHALNNFMGCLLNVNEIDRFWKVYKEMDSLG 213
Query: 210 FSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ NV T+ +I+ K ++ F+++ FY M+ G+ P++ +++G C +
Sbjct: 214 YVENVNTFNLVIYSFCKESKLFEALSVFY-RMLKCGVWPNVVSFNMMIDGACKTGDMRFA 272
Query: 269 KSFL-KFLLGGGWKINENMA--QKLVKCYCELGRVDELE----EQLETLTKCNQ 315
L K + G ++ N ++ +C+ GR+D E + +++ CN+
Sbjct: 273 LQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNE 326
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + SM QG+ D+ F +LI L G + AL +++ M+ + N Y++ +
Sbjct: 450 ADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNK-TSNLVIYNSIV 508
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G A A + A ++ TY +L++ SLK + + D +M
Sbjct: 509 NGLSKRGMAGAAE----AVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGE 564
Query: 247 PSIPIL--EKVLEGLCARRKLDRVKSFLKFLLGGG 279
S+ ++ ++ LC ++ K LKF++ G
Sbjct: 565 KSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERG 599
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ NV A +F M+ + I PD + ++IC +G V+ A LF MV
Sbjct: 261 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 320
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY A I G+ G + + + G + N+ TY +L G K +
Sbjct: 321 C-KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV 379
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ + EM G+ +I ++ GLC +D+ +K + G+ + L
Sbjct: 380 DTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 439
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ + E L + P V+ F+ ++ + +S L+D E + M ++
Sbjct: 440 MDAYCKSREMVRAHELLRQMLDRELQPTVVT--FNVLMNGFCMSGMLEDGEKLLKWMLEK 497
Query: 351 GL 352
G+
Sbjct: 498 GI 499
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 13/299 (4%)
Query: 5 CRVLSVAKSSRYLLMPLRF-DRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVD 63
C V +A +S+ L M + N N + VS + L ++L + ++DS +
Sbjct: 130 CIVAQIATASKDLKMARKLIQDFWVNPNLD-VGVSFARKLFDKMLNY---GLLISVDSCN 185
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
+F + S+ D + +L K + VL+ + +KG + Y +I L K
Sbjct: 186 LFISHLSE-DLDGIKIAL------KGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK 238
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A V M ++GI PD ++ +LI G+V +A LF+ M + P+ TY
Sbjct: 239 VAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM-QKRKISPDFITYT 297
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I G G V +K + + + TY +LI G K + +M+ +
Sbjct: 298 AVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM 357
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P+I + +GLC ++D L + G ++N LV C+ G +D+
Sbjct: 358 GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQ 416
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 13/246 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y L+ K N+ A+ + ME G PD+ + +L+ A S ++V
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 451
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A L M+ E +P T++ ++GF G ++ K + G N TY SLI
Sbjct: 452 AHELLRQMLD-RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 510
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + Y M + G++P +++G C R + + ++G G+
Sbjct: 511 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 570
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ + L+K + + + E E E + + G++ + + D+
Sbjct: 571 LTVSSYNALIKGFYKRKKFLEARELFEQMRR------------EGLVADREIYNIFADIN 618
Query: 342 YSVGRM 347
Y G+M
Sbjct: 619 YDEGKM 624
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL---ICACLCSGDVVTALSLFEIMVSSEE 174
GK++ F++H M G+ P+ + +L +C C G+V TA L M +
Sbjct: 341 EGKMKEA-FSLH--NQMLQMGLTPNIVTYTALADGLCKC---GEVDTANELLHEMCR-KG 393
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ N TY++ ++G GN+D K AGF + TY +L+ K+R+
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+M+ + P++ ++ G C L+ + LK++L G N L+K Y
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 513
Query: 295 C 295
C
Sbjct: 514 C 514
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 38/246 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI GK ++ VF SM++ G+ P FNSL+ L G A S+F+ M+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------------------------- 202
S+ P++ T++ I GF VD +++
Sbjct: 219 STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKV 278
Query: 203 --AANIAAG-------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
A N+ G + +V TY +L+ G + D +EEM+S G+ P+
Sbjct: 279 NIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYN 338
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCELGRVDELEEQLETLTK 312
+++GLC +K+D++K + LGGG I + L+ +C G +++ E E +
Sbjct: 339 TLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMV 398
Query: 313 CNQSPE 318
N P+
Sbjct: 399 LNVRPD 404
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 11/212 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM--EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y L+ + V A +V M ++ + PD + +L+ ++ AL +FE
Sbjct: 265 YNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEE 324
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKA 227
MVS + KPN TY+ I G + +D + + + + G F + T +L++ A
Sbjct: 325 MVS-KGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + +E+MM L + P ++ LC R +R + L + ++
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443
Query: 288 QKLVKCY-------CELGRVDELEEQLETLTK 312
LV Y C G+ + E L K
Sbjct: 444 TPLVAAYKSMFEFLCRNGKTAKAERVFRQLMK 475
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 5/251 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE--WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAM 128
WD + L S KA +V E KM + G E + Y L + + A
Sbjct: 76 LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAK 135
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M ++GI+P FN ++ SG V TA FE M S E P+ TY+ ++G
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDM-KSREIMPDVVTYNTMVNG 194
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + ++ K++ V TY +LI G + D R EEM G+ P+
Sbjct: 195 YCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPN 254
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQL 307
+L GLC K+ +S LK ++ +N + +L+ C+ G +D L
Sbjct: 255 AITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVL 314
Query: 308 ETLTKCNQSPE 318
+ + + + E
Sbjct: 315 KAMIRLSVPTE 325
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V V A+ + M+ G+KP++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPG-LCNAEKMSEAR 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + ISG G++DA A I Y LI
Sbjct: 276 SILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII 246
KA ++D + ++++ II
Sbjct: 336 YCKAGEYDKAIKLLDKVIEKDII 358
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 14/330 (4%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+ D+M++ G E + Y +I K + V A+ + ME GI+PD+ +NSLI
Sbjct: 172 YMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGL 231
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
SG A + M E Y P+ T++A I G + + Y I +
Sbjct: 232 CNSGRWDDATRMVSCMTKREIY-PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ TY LI+G D ++ + M+S G P + ++ G C +K++
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ G N L++ YC G+++ EE + + C P ++ + + L+ L
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYN----VLLHGL 406
Query: 334 SD--RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA---YDRLDLFLDHIKGSYK 388
D +++ + M K G+ A+ V I C A D DL+
Sbjct: 407 CDNGKIEKALVILADMQKSGMD---ADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLT 463
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY ++ G + GL G+ D++ +MK
Sbjct: 464 PDIWTYTAMMLGLYKKGLRGEADALFRKMK 493
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 129/313 (41%), Gaps = 7/313 (2%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
+++ L++ K++ ++++ M+ GI + N L+ C C CS + ALS
Sbjct: 83 DFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCS-QLSLALSFLGK 141
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ ++P+ T+ + ++GF + + + G+ NV Y ++I G K++
Sbjct: 142 MMKLG-HEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSK 200
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D+ M GI P ++ GLC + D + + +
Sbjct: 201 QVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFN 260
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ + GR+ E EE E + + + P+++ +S +I + RLD+ E G M
Sbjct: 261 ALIDACVKEGRISEAEELYEEMIRRSLDPDIVT--YSLLIYGLCMYSRLDEAEQMFGFMV 318
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+G F ++I Y + + + LF + + TY L+ GY RAG
Sbjct: 319 SKG-CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKL 377
Query: 408 GKLDSVINEMKFA 420
+ + M F
Sbjct: 378 NVAEEIFKWMVFC 390
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A +F M G+ P+ +N L+ +G + AL + M
Sbjct: 364 YTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQ 423
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S + TY+ I G G V DA + + + N+ G + ++ TY +++ G K
Sbjct: 424 KSG-MDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLK-GLTPDIWTYTAMMLGLYKKGL 481
Query: 230 FDSVDRFYEEMMSLGIIPS 248
D + +M GI+P+
Sbjct: 482 RGEADALFRKMKEDGILPN 500
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 127/314 (40%), Gaps = 10/314 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y + A+ + A+ + M GI P A N LI A C SG + AL +F M
Sbjct: 123 YITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREM 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+S TY I G LG + + + S V TY SLIHG +++D
Sbjct: 183 -PNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKD 241
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
DS R EEM S GI P++ +++G C R L ++ N
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLDDVEYSV 344
LV C+ G++ E E L+ + P+ ++ F I + + ++ LD E +
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLD--EMVL 359
Query: 345 GRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRR 403
G + L++ + ++ +R L+L + T+D LV +
Sbjct: 360 GGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCN 419
Query: 404 AGLSGKLDSVINEM 417
G K +++EM
Sbjct: 420 KGDLHKAAHLVDEM 433
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ NV A +F M+ + I PD + ++IC +G V+ A LF MV
Sbjct: 361 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 420
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY A I G+ G + + + G + N+ TY +L G K +
Sbjct: 421 C-KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV 479
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ + EM G+ +I ++ GLC +D+ +K + G+ + L
Sbjct: 480 DTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL 539
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ + E L + P V+ F+ ++ + +S L+D E + M ++
Sbjct: 540 MDAYCKSREMVRAHELLRQMLDRELQPTVVT--FNVLMNGFCMSGMLEDGEKLLKWMLEK 597
Query: 351 GL 352
G+
Sbjct: 598 GI 599
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 1/213 (0%)
Query: 90 QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
Q VL+ + +KG + Y +I L K V A V M ++GI PD ++ +L
Sbjct: 305 QRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 364
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I G+V +A LF+ M + P+ TY A I G G V +K + +
Sbjct: 365 IDGFCKLGNVSSAYRLFDEM-QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ TY +LI G K + +M+ +G+ P+I + +GLC ++D
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
L + G ++N LV C+ G +D+
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQ 516
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 13/246 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y L+ K N+ A+ + ME G PD+ + +L+ A S ++V
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A L M+ E +P T++ ++GF G ++ K + G N TY SLI
Sbjct: 552 AHELLRQMLD-RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + Y M + G++P +++G C R + + ++G G+
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 670
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ + L+K + + + E E E + + G++ + + D+
Sbjct: 671 LTVSSYNALIKGFYKRKKFLEARELFEQMRR------------EGLVADREIYNIFADIN 718
Query: 342 YSVGRM 347
Y G+M
Sbjct: 719 YDEGKM 724
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 6/210 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G++Q V + + M+ +G+KP+ +N +I +G V A + M+ SE P+
Sbjct: 302 GELQRV---LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMI-SEGIAPD 357
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I GF LGNV + + + S + TY ++I G + D+ +
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ + P +++G C K+ S +L G N L C+ G
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCG 477
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGII 328
VD E L + C + E+ ++ ++ ++
Sbjct: 478 EVDTANELLHEM--CRKGLELNIYTYNSLV 505
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL---ICACLCSGDVVTALSLFEIMVSSEE 174
GK++ F++H M G+ P+ + +L +C C G+V TA L M +
Sbjct: 441 EGKMKEA-FSLH--NQMLQMGLTPNIVTYTALADGLCKC---GEVDTANELLHEM-CRKG 493
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ N TY++ ++G GN+D K AGF + TY +L+ K+R+
Sbjct: 494 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 553
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+M+ + P++ ++ G C L+ + LK++L G N L+K Y
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613
Query: 295 C 295
C
Sbjct: 614 C 614
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 20/312 (6%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEY 175
LS + + A+ VF G+ ++A +N +I LC G VV A L + +
Sbjct: 227 LSEDLDGIKIALKVFVEFPEVGVCWNTASYN-IITHSLCQLGRVVEAHQLL-LQMELRGC 284
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ +Y I+G+ +G + + K G N TY +I K +R
Sbjct: 285 IPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAER 344
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK-FLLGGGWKINEN-MAQKLVKC 293
EM+S GI P I +++G C KL V S + F KI+ + + V C
Sbjct: 345 VLREMISEGIAPDGVIYTTLIDGFC---KLGNVSSAYRLFDEMQKRKISPDFITYTAVIC 401
Query: 294 -YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C+ GRV E ++ + P+ + ++ +I Y ++ + +M + GL
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVT--YTALIDGYCKEGKMKEAFSLHNQMLQMGL 459
Query: 353 SFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGK 409
+ + +C +C D + L + + +L TY+ LV G +A G
Sbjct: 460 TPNIVTYTALADGLC---KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA---GN 513
Query: 410 LDSVINEMKFAE 421
+D + MK E
Sbjct: 514 IDQAVKLMKDME 525
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 5/284 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+V A+ +F +A+ +KPD V+NSL+ G ++ AL + MV + P+ TY
Sbjct: 269 DVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE-DGCHPDIWTY 327
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +GN+ I G+ +V T+ ++I G K DS + E M
Sbjct: 328 NIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWM 387
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P VL GLC K V + ++ G + N L++ +C++ +++E
Sbjct: 388 YGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEE 447
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ +++ P+ + F+ +I + + LD ++ ++G S +A+ +
Sbjct: 448 ASGVIVRMSQDGLVPDTI--SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYS-ATADTFNI 504
Query: 363 VICSYFRCAAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+I +Y + +F + I YK TY LV G +A
Sbjct: 505 LIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAA 548
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 3/216 (1%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
++ ++++++ L + KA+ V E + +LKG Y LI K+
Sbjct: 387 MYGIAPDAITYNSVLNGLCKAG--KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 444
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A V M G+ PD+ FN+LI +GD+ A LF+ + + Y + T++
Sbjct: 445 LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQ-KLDEKGYSATADTFN 503
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I +SS N+ K + I+ G+ ++ TY L+ GS KA + D EM+S
Sbjct: 504 ILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSK 563
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
G +PS+ +VL L ++ + + ++ G
Sbjct: 564 GFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMG 599
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A H+F M + + PD A FN+++ A GD++ + +L V N T + +I
Sbjct: 99 ARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLA-KVLKRGMSVNKFTCNIWI 157
Query: 187 SGFSSLGN-------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
G G V++M+ + A ++ TY +L+ G K ++
Sbjct: 158 RGLCEGGRLEEAVALVESMDAYIAPDVV--------TYNTLMRGLCKDSKVQEAAQYLRR 209
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
MM+ G IP +++G C R L LK + G+ + L+ C G
Sbjct: 210 MMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGD 269
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+ E + P+++++
Sbjct: 270 VERALELFNEAQAKDLKPDLVVY 292
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 4/203 (1%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK + V F M +G +P++ +N LI C + + S + +S + P
Sbjct: 407 AGKAKEVN---ETFEEMILKGCRPNAITYNILI-ENFCKINQLEEASGVIVRMSQDGLVP 462
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ +++ I GF G++D + G+S T+ LI + ++ +
Sbjct: 463 DTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIF 522
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM+S G P + +++G C +DR L ++ G+ + +++
Sbjct: 523 GEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMN 582
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
RV E + + + PEV+
Sbjct: 583 HRVSEAVAIIHIMVRMGVVPEVV 605
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 7/259 (2%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L K+LK S ++++ C I + G + + A+ + SM+A I PD +N+L+ L
Sbjct: 138 LAKVLKRGMS-VNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRG-L 194
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
C V + + + ++ P+ TY+ I G+ + + I GF +
Sbjct: 195 CKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDR 254
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D + + E + + P + + +++GLC + + +
Sbjct: 255 VTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNE 314
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + ++ C++G + + + P+V F+ +I Y
Sbjct: 315 MVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT--FNTMIDGYCKR 372
Query: 335 DRLDDVEYSVGRMGKQGLS 353
+LD V RM G++
Sbjct: 373 LKLDSALQLVERMWMYGIA 391
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 126/292 (43%), Gaps = 3/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + T M G+KPD + +N++I + G+ AL L M S KPN TY+ +
Sbjct: 573 AKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSS-IKPNLITYNTLV 631
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G V+ ++AGFS + T+ ++ ++R D + +E MM+ G+
Sbjct: 632 AGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLH 691
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I + +L+ LC + L+ +LG G + L+ +C+ +D
Sbjct: 692 ADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFAT 751
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ N SP + F+ ++ R+ + + M K GL + +V
Sbjct: 752 YAQMLHQNISPNIAT--FNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGH 809
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + + L+ + + + + +TY+ L++ + +AG+ + + +M+
Sbjct: 810 GKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 128/329 (38%), Gaps = 42/329 (12%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LIA +V + P A+ V M AQG+ D +N+L+ +G V A + ++M
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM-KEA 233
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN TY FI + V+ Y + G ++V T +L+ G + F
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293
Query: 234 DRFYEEMMSLGIIPS-------IPILEKVLEG---------------------------- 258
+ EM +G +P+ I L K G
Sbjct: 294 YALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDW 353
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L + K D VK L+F L +N L+ C+ VDE E+ L + + + SP
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 319 VLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RL 376
V+ FS +I + LD EY RM K+ + +I +F+ D L
Sbjct: 414 VVT--FSSVINGFVKRGLLDKATEYK--RMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469
Query: 377 DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+++ D + ++ + D LV G R+ G
Sbjct: 470 EVYHDMLCEGVEVNKFIVDSLVNGLRQNG 498
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 118/306 (38%), Gaps = 42/306 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A V ME + I P+ F+S+I + G ++ + ++ M+
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKRMM 440
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA--------------MNKWYAANI---------- 206
PN TY I GF DA +NK+ ++
Sbjct: 441 KERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKI 500
Query: 207 -----------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+G S++ Y +LI G KA D + +F +E+M ++P +
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC K KS L + G K +++ ++ +C G + + L + +
Sbjct: 561 INCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI 620
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P L+ + + + L+ + ++ +Y + M G S S ++ C+ R
Sbjct: 621 KPN-LITYNTLVAGLFG-TGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQA----CSQSRR 674
Query: 376 LDLFLD 381
LD+ LD
Sbjct: 675 LDVILD 680
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 6/227 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA +VLE L + + + LI K ++ A + M Q I P+ A F
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFN---ALILGHCKSSHLDNAFATYAQMLHQNISPNIATF 767
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAAN 205
N+L+ G + A ++ I + +PN+ TYD ++G N V+AM + Y
Sbjct: 768 NTLLGGLESVGRIGEAGTVL-IEMEKSGLEPNNLTYDILVTGHGKQSNKVEAM-RLYCEM 825
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ GF V TY +LI KA +++M G+ P+ + ++ G R
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
VK LK + G+ ++ + + + + G + + L+ L +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNLYR 932
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 4/258 (1%)
Query: 167 EIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
++++ EE PN T+ + I+GF G +D ++ G + NV TY +LI G
Sbjct: 400 QVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF 459
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K + D+ Y +M+ G+ + I++ ++ GL K++ + K G G ++
Sbjct: 460 FKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDH 519
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
L+ + G + + + L N P+ ++ ++ I + + + + +
Sbjct: 520 VNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVV--YNVFINCLCILGKFKEAKSIL 577
Query: 345 GRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
M GL + M++ + L L + S K TY+ LVAG
Sbjct: 578 TEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGT 637
Query: 405 GLSGKLDSVINEMKFAEY 422
G K ++NEM A +
Sbjct: 638 GAVEKAKYLLNEMVSAGF 655
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 52/131 (39%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S+ N TY I NVD + S NV T+ S+I+G +K D
Sbjct: 372 SDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLD 431
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ M GI P++ +++G + D +L G ++N+ + LV
Sbjct: 432 KATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLV 491
Query: 292 KCYCELGRVDE 302
+ G+++E
Sbjct: 492 NGLRQNGKIEE 502
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 11/263 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS-GKVQNV 124
F S +++ALI +L K Q + W L ++ E LI+ + + V
Sbjct: 140 GFKYSTENYNALIEALG----KIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKV 195
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ F ME G++P + FN L+ A S V A +F+ M +++P+ K+Y
Sbjct: 196 KEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKM-KDRKFRPDIKSYTI 254
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G+ N+ +++ Y GF + TY LI+ KAR +D+ + +M +
Sbjct: 255 LLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANK 314
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+P+ I ++ GL + R+L F + G+ +V YC+ R+D+
Sbjct: 315 CMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAY 374
Query: 305 EQLETLTKCNQSPE-----VLLH 322
++ + KC P+ ++LH
Sbjct: 375 RIVDEMRKCGVGPQTRTYDIILH 397
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 124/291 (42%), Gaps = 8/291 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + T + ++ F ++ L+ +L +S ++AQ V + D+ + + +
Sbjct: 195 VKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPD---IKS 251
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ G+ QN+ V+ M+ +G +PD+ + LI A + A+ LF M
Sbjct: 252 YTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKM- 310
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P Y I+G S + +++ + A+GF+ TY +++ ++
Sbjct: 311 EANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRM 370
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R +EM G+ P + +L L ARR + + F G + + + +
Sbjct: 371 DDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEI 430
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
+V+ +C RVD + + P +H FS +I ++LD+
Sbjct: 431 VVRMFCNEERVDMALRVWDEMKAKGVLPG--MHMFSTLINSLCYENKLDEA 479
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 37/227 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ +F MEA P ++ +LI + AL FE
Sbjct: 287 YGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSK 346
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-- 228
+S + P + TY+A + + +D + G +TY+ ++H +KAR
Sbjct: 347 ASG-FTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRT 405
Query: 229 -------------------------------DFDSVD---RFYEEMMSLGIIPSIPILEK 254
+ + VD R ++EM + G++P + +
Sbjct: 406 KEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFST 465
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
++ LC KLD + +L G + M L + + G+ D
Sbjct: 466 LINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQD 512
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 58/142 (40%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G+ P + ++ ++ + + A +F+ M S +P+ TY+ +
Sbjct: 373 AYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVV 432
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F + VD + + A G + + +LI+ D +++ EM+ +GI
Sbjct: 433 RMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIR 492
Query: 247 PSIPILEKVLEGLCARRKLDRV 268
P + + + L K D V
Sbjct: 493 PPAAMFSNLKQTLLDEGKQDMV 514
>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 811
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 134/308 (43%), Gaps = 13/308 (4%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + +F+ +G+K D VF+S I + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A +++ M+ + PN TY I G G + Y + G ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + S YE+M+ +G P + I +++GL + + F +LG +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+N + L+ +C L R DE + + P+V F+ ++R+ + D +
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEDAF--CK 549
Query: 342 YSVGRMGKQGLSF----KSAEDV---EMVICSYFRCAAYDRLDLFLDH-IKGSYKLRRAT 393
+ +G Q K + D+ +VI F+C + F ++ I+G + T
Sbjct: 550 HMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVT 609
Query: 394 YDFLVAGY 401
Y+ ++ GY
Sbjct: 610 YNTMICGY 617
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 3/255 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFA 127
+ F+ ++ ++ + K + + +L +++ N+ D C +I L K + A
Sbjct: 532 ATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDA 591
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
F ++ ++PD +N++IC + A +FE++ + PN+ T I
Sbjct: 592 SKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELL-KVTPFGPNTVTLTILIH 650
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
++D + ++ G N TY L+ K+ D + + +EEM GI P
Sbjct: 651 VLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 710
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
SI +++GLC R ++D + + + L++ YC++GR+ E
Sbjct: 711 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLY 770
Query: 308 ETLTKCNQSPEVLLH 322
E + + P+ LL
Sbjct: 771 EHMLRNGVKPDDLLQ 785
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 129/288 (44%), Gaps = 8/288 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNV 124
+ S +++A++ +L +S A+ + L + N + Y L+ AL G+
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPSARRFFDSMLSDGVAPN---VYTYNILVRALCGRGHRK 174
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ V M G P++ +N+L+ A +G+V A L ++M KPN T+++
Sbjct: 175 E-ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGG-LKPNLVTFNS 232
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++G G ++ K + + G + + +Y +L+ G K + EM G
Sbjct: 233 VVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKG 292
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I+P + ++ +C L+R ++ + G ++NE L+ +C+ G +D+
Sbjct: 293 IMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDAL 352
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +C P V+ ++ +I Y + R+D+ V M +G+
Sbjct: 353 LAVREMRQCRIQPSVVC--YNALINGYCMVGRMDEARELVREMEAKGV 398
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 34/246 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM- 169
Y L+ KV A+ VF M +GI PD F SLI +G++ A+ L M
Sbjct: 265 YNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR 324
Query: 170 ---------------------------------VSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ +P+ Y+A I+G+ +G +D
Sbjct: 325 ERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMD 384
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A G +V TY +++ K D S + ++M+ G++P ++
Sbjct: 385 EARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
LC ++L K ++ G + +E L+ +C+ G V+ + + K
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVL 504
Query: 317 PEVLLH 322
P+V+ +
Sbjct: 505 PDVVTY 510
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + MEA+G+KPD +++++ A +GD +A L + M+ + P++ TY + I
Sbjct: 386 ARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL-PDAITYSSLI 444
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + + I+ G + TY SLI G K + + ++EM+ G++
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVL 504
Query: 247 PSIPILEKVLEGL 259
P + ++ GL
Sbjct: 505 PDVVTYSVLINGL 517
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 24/235 (10%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS----G 157
KG + + Y+ +++ K + A + M G+ PD+ ++SLI LC G
Sbjct: 396 KGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI-RVLCEEKRLG 454
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D A LF+ M+S +P+ TY + I G GNV+ + + AG +V TY
Sbjct: 455 D---AHVLFKNMISLG-LQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510
Query: 218 ESLIHGSLKARDFDSVDRF---------------YEEMMSLGIIPSIPILEKVLEGLCAR 262
LI+G K+ R Y+ +M + + +L+G C +
Sbjct: 511 SVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMK 570
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
++ + +L W ++ ++ L+ +C G V + + + +C +P
Sbjct: 571 GLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAP 625
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 49/251 (19%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + + + + A +F +M + G++PD + SLI G+V ALSL + MV
Sbjct: 440 YSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMV 499
Query: 171 SS----------------------------------EEYKPNSKTYDAF----------- 185
+ EE P + YDA
Sbjct: 500 KAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKS 559
Query: 186 ----ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ GF G ++ +K Y + + ++++ Y LIHG + + F+++M+
Sbjct: 560 VLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQML 619
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P+ ++ GL + + ++ LL + ++ L+ + G VD
Sbjct: 620 QCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVD 679
Query: 302 ELEEQLETLTK 312
+ + L + +
Sbjct: 680 AVLDVLHGMAR 690
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YAC +++ A V M A G+ PD +++LI +G V AL + ++M+
Sbjct: 227 YAC------RLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLML 280
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN+ TY + + + G + + IA+GF+ + TY L+ K F
Sbjct: 281 E-EGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAF 339
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM---- 286
+ VD EE + G P + ++GLC ++D+ + + +L G + +E
Sbjct: 340 EEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNIL 399
Query: 287 ------------AQKLVKCYCELG 298
A++L++C ELG
Sbjct: 400 LDGVCRSSTAWAAKRLLECSAELG 423
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 15/233 (6%)
Query: 127 AMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+H+ M A +PD+A F ++ A + AL++ + M +++ P++
Sbjct: 165 ALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAM-AADGVAPDAAACTVL 223
Query: 186 ISGFS-SLGNVDA---MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ ++ L DA + +W AN G + +V TY +LI G A + M+
Sbjct: 224 VGVYACRLRRFDAAYEVVRWMVAN---GVAPDVVTYSTLISGLCSAGQVAEALGVLDLML 280
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P+ ++ C ++ K L ++ G+ + LV+ C++G +
Sbjct: 281 EEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFE 340
Query: 302 ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E++ LE T +P+V+ + + G+ + + R+D V +M GL
Sbjct: 341 EVDALLEESTAKGWTPDVITYSSYMDGLCK----AGRIDKSFALVDKMLSNGL 389
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 8/176 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+FT M +GI P+S FN ++ LC G + AL L S+E+ TY+ I
Sbjct: 450 LFTDMAKKGIAPNSWTFN-IVVHSLCKLGRLHKALCLLR----SKEFVATVITYNTLIRH 504
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
S G + + I G + N TY +I + F + + + PS
Sbjct: 505 LSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPS 564
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ GL L ++ + + +LG G+ I + Q+L+K C+ G +E
Sbjct: 565 A--FLSIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVE 618
>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 562
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 22/240 (9%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L++ GK + A+ VF M GI+P +N L+ A SG V A ++F+ M
Sbjct: 314 YALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSM- 372
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ +Y +S + + +++ K++ I GF NV TY +LI G K D
Sbjct: 373 RRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKINDL 432
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ V + YEEM+ GI + IL +++ D + K + G + QK
Sbjct: 433 EMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPD----QKA 488
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--------FSGIIRLYALSDRLDDVEY 342
L + DE E ++ E+++HF +GI++L + D+ EY
Sbjct: 489 KNVLLSLAKTDEERE---------EANELVVHFSENSSLPKVNGIVKLVDEDEEEDNYEY 539
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 5/290 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ T M + + PD FN LI A G ++ A + +M E KP+ TY+A + G
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE-KPDIVTYNALMEG 309
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ S NV + + + G +V Y LI G K + D ++E+ + ++P+
Sbjct: 310 YCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPT 369
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
I +++GLC ++ VK L + G + L+ C+ GR+ E L
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLV 429
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
+ K P ++ ++ ++ Y L + ++ + RM K GL + ++I Y
Sbjct: 430 MMMKKGVKPNIVT--YNAMMDGYCLRNNVNVAKDIFNRMVKSGLE-PDILNYNVLINGYC 486
Query: 369 RCAAYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEM 417
+ D + ++ + A+Y+ L+ G G + +++EM
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEM 536
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 4/185 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++ +V + M PD +N LI A G ++ AL + +M+ + KP
Sbjct: 383 SGRISHVK---KLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVL-VMMMKKGVKP 438
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A + G+ NV+ + + +G ++ Y LI+G K D +
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM +IP I +++GLC ++ V+ L + G + L+ +C+
Sbjct: 499 KEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558
Query: 298 GRVDE 302
D+
Sbjct: 559 QPFDK 563
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 19/290 (6%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ + P A+ +FT ++++GI P A F LI A SL ++ S Y+PN
Sbjct: 67 RMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNL 125
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ I+GF G + + +A G+ + TY +LI+G K + +E
Sbjct: 126 VTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQE 185
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + P++ + +++GLC + + G ++ L+ C +GR
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E+ + L + + N P+ + F+ +I R+ + + + M K+G E
Sbjct: 246 WQEVTQLLTKMVRENVDPDD--YTFNILIDALCKEGRILEAQGVLAMMSKRG------EK 297
Query: 360 VEMVI--------CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
++V CS R ++ +LF +K + Y+ L+ GY
Sbjct: 298 PDIVTYNALMEGYCS--RENVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 2/193 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M +G+KP+ +N+++ +V A +F MV S +P+ Y+ I
Sbjct: 424 ALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG-LEPDILNYNVLI 482
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ VD + ++ +Y SLI G V +EM G
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS 542
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+ C + D+ S + ++ G W + +V C+ ++ E+
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP-DFYTNHAIVDNLCKGEKLKMAEDA 601
Query: 307 LETLTKCNQSPEV 319
L+ L SP V
Sbjct: 602 LKHLLMHGCSPNV 614
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 38/343 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKP----------------------------- 141
Y LI K + A+H+ ME ++P
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222
Query: 142 ------DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
D+ +NSLI C G L MV E P+ T++ I G +
Sbjct: 223 ERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV-RENVDPDDYTFNILIDALCKEGRI 281
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A G ++ TY +L+ G + + M+ G+ P + +
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G C + +D K L L+ C GR+ +++ L+ + Q
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P+V+ ++ +I R+ + + M K+G+ M+ R
Sbjct: 402 PPDVVT--YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
D+F +K + Y+ L+ GY + + + + EM+
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMR 502
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 17/301 (5%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF-----SWDALITSLQSSSPK 87
N SV S LI +L+ +S SV +A N F +++ALI SL K
Sbjct: 88 NEASVKLSPALIEEVLK-KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESL----GK 142
Query: 88 KAQLVLEWRL-DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
Q L W L D M + D +A + + + V A+ F ME G K +S+ F
Sbjct: 143 IKQFKLIWNLVDDMKQKKLLSKDTFALISRRYARARKVKEAITAFHKMEDYGFKMESSDF 202
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N ++ S +V A +F+ M + ++P+ K+Y + G+ N+ +N+ Y
Sbjct: 203 NRMLDILSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMK 261
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF +V Y +I+ KA+ +D RF+ EM PS I ++ GL + +KL+
Sbjct: 262 DEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLN 321
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-----EVLL 321
F + G+ + LV YC R+++ + ++ + P +++L
Sbjct: 322 DALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIIL 381
Query: 322 H 322
H
Sbjct: 382 H 382
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 8/248 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
DKM K E + Y L+ G+ N+ V+ M+ +G +PD + +I A
Sbjct: 222 FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCK 281
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ A+ F M KP+ + + I+G S ++ +++ + ++GF +
Sbjct: 282 AKKYDEAVRFFNEM-EQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAP 340
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L+ ++ + + +EM S GI P+ + +L L ++ R K +
Sbjct: 341 TYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLI---RMQRTKEAYEVY 397
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ + + +V+ +C R+D + + + P +H FS +I +
Sbjct: 398 QKMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPG--MHMFSSLITALCHEN 455
Query: 336 RLDDV-EY 342
+LD+ EY
Sbjct: 456 KLDEACEY 463
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 4/193 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI G + + A+ F ++ G ++ +N+L+ A S + A + M
Sbjct: 307 FCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEM- 365
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ PN++TYD + L + + Y V TYE ++
Sbjct: 366 RSKGIGPNARTYDIILH---HLIRMQRTKEAYEVYQKMSCEPTVSTYEIMVRMFCNKERL 422
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + ++EM G++P + + ++ LC KLD + +L G + ++ +L
Sbjct: 423 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRL 482
Query: 291 VKCYCELGRVDEL 303
+ + GR D++
Sbjct: 483 KQTLLDEGRKDKV 495
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 161/386 (41%), Gaps = 44/386 (11%)
Query: 36 SVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
S+ + N L+S L + + + + L+ + F F++ + L S A L+
Sbjct: 170 SIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSD-DGAGAALD 228
Query: 95 WRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + KG + +D Y C I L+G K V A V S+ G+ P ++N+++
Sbjct: 229 LYREAIGKGVK--IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNG 286
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
GD+ A+ E M S +PN +++ I F + +D +W + G +
Sbjct: 287 YCQIGDMDRAILTIEQM-ESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAP 345
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V+TY LI G + F + EEM G P++ ++ LC K+ + L
Sbjct: 346 SVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVL 405
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ ++G G N N+ L+ C +G++ E + ++K ++ ++ +I+
Sbjct: 406 RDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVT--YNSLIK--- 460
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
+ +MGK K AE++ +I S C D I
Sbjct: 461 ----------GLCKMGK----LKEAEEMFFLITSTGHCP---------DVI--------- 488
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
TY+ L++GY AG S K + MK
Sbjct: 489 TYNSLISGYSNAGNSQKCLELYETMK 514
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 54/343 (15%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
S K NV + +F M G +PD V+ + A + GD+ A+ LFE M + P
Sbjct: 44 SKKFDNV---LDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETM-KRRKVVP 99
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N Y+ I G + K + N T+ +LI G KA + D
Sbjct: 100 NVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLR 159
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL---------------------- 275
E M + PSI +L GLC R+++ + L +
Sbjct: 160 ERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKS 219
Query: 276 --------------LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
+G G KI+ L+ C+ G+V++ EE L++L + P ++
Sbjct: 220 DDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVI 279
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGL-----SFKSAEDVEMVICSYFRCAAYDRL 376
++ I+ Y +D ++ +M +GL +F S VI + D+
Sbjct: 280 --YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS------VIDKFCEMQMIDKA 331
Query: 377 DLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ ++ + G TY+ L+ GY R + + ++ EM+
Sbjct: 332 EEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEME 374
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 5/266 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + + A +F M + + P+ FN+LI +G+V A+ L E M
Sbjct: 104 YNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERM- 162
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD- 229
E+ +P+ T+++ +SG ++ GF + TY + G LK+ D
Sbjct: 163 KKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDG 222
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ Y E + G+ +L GLC K+++ + LK L+ G E +
Sbjct: 223 AGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNT 282
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
+V YC++G +D +E + P + F+ +I + +D E V +M
Sbjct: 283 IVNGYCQIGDMDRAILTIEQMESRGLRPNCIA--FNSVIDKFCEMQMIDKAEEWVKKMVG 340
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDR 375
+G++ S E ++I Y R + R
Sbjct: 341 KGIA-PSVETYNILIDGYGRLCVFSR 365
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 4/208 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++++LI+ ++ + L L + K+ G + ++ + LI+ K + + +F
Sbjct: 488 ITYNSLISGYSNAGNSQKCLELYETMKKL--GLKPTINTFHPLISGCSK-EGIKLKETLF 544
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + PD V+N++I +G V A SL + MV +P++KTY++ I G
Sbjct: 545 NEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMG-VRPDNKTYNSLILGHLK 603
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G + A G TY LI G +DF+ +Y EM+ G +P++ I
Sbjct: 604 EGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCI 663
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ GL +L +S ++ G
Sbjct: 664 CNELSTGLRKDGRLQEAQSICSEMIANG 691
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 2/192 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A V M +G+ P++ ++N LI G + AL F+ M
Sbjct: 385 YGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM- 443
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S TY++ I G +G + + + + G +V TY SLI G A +
Sbjct: 444 SKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNS 503
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
YE M LG+ P+I ++ G C++ + ++ +L + + +
Sbjct: 504 QKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAM 562
Query: 291 VKCYCELGRVDE 302
+ CY E G V +
Sbjct: 563 IHCYQETGHVQK 574
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ N + ++ +M+ G+KP F+ LI C G + +LF M+
Sbjct: 490 YNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEML 548
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ Y+A I + G+V + G + +TY SLI G LK
Sbjct: 549 QMN-LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKL 607
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++M + G+IP +++G C + + + + +L G+ N + +L
Sbjct: 608 SETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNEL 667
Query: 291 VKCYCELGRVDE 302
+ GR+ E
Sbjct: 668 STGLRKDGRLQE 679
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 5/202 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KP 177
++Q + A M +GI P +N LI G + F+I+ EE KP
Sbjct: 324 EMQMIDKAEEWVKKMVGKGIAPSVETYNILIDG---YGRLCVFSRCFQILEEMEENGEKP 380
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +Y + I+ G + + G N Y LI GS RF+
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFF 440
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM GI +I +++GLC KL + + G + L+ Y
Sbjct: 441 DEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNA 500
Query: 298 GRVDELEEQLETLTKCNQSPEV 319
G + E ET+ K P +
Sbjct: 501 GNSQKCLELYETMKKLGLKPTI 522
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + +V A + M G++PD+ +NSLI L G + L + M
Sbjct: 559 YNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDM- 617
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ P + TY I G L + + WY + GF NV L G K
Sbjct: 618 KAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRL 677
Query: 231 DSVDRFYEEMMSLGI 245
EM++ G+
Sbjct: 678 QEAQSICSEMIANGM 692
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 142/320 (44%), Gaps = 10/320 (3%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
S PK+A L+ R D G E + Y+ L+ K A +F SM +G++P
Sbjct: 284 SGQPKEAIGTLKKMRSD----GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D A + +L+ G +V +L ++MV + +P+ ++ I ++ VD
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNG-IQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
++ G + NV Y ++I K+ D ++E+M+ G+ P+I + ++ GLC
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT 458
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
K D+ + + +L G +N ++ +C+ GRV E E+ + + + P+++
Sbjct: 459 CDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 518
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFL 380
++ +I L+ ++D+ + M G+ +I Y R + D L LF
Sbjct: 519 --YNTLIDGCCLAGKMDEATKLLASMVSVGVK-PDIVTYGTLINGYCRVSRMDDALALFK 575
Query: 381 DHIKGSYKLRRATYDFLVAG 400
+ + TY+ ++ G
Sbjct: 576 EMVSSGVSPNIITYNIILQG 595
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 5/263 (1%)
Query: 49 QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
Q V Q + N + + +I L +S S A L E +D+ L N
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN--- 445
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y LI A + M +GI ++ FNS+I + G V+ + LF+
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MV KP+ TY+ I G G +D K A+ ++ G ++ TY +LI+G +
Sbjct: 506 LMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D ++EM+S G+ P+I +L+GL R+ K + G ++ +
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624
Query: 288 QKLVKCYCELGRVDELEEQLETL 310
++ C+ DE + L
Sbjct: 625 NIILHGLCKNNLTDEALRMFQNL 647
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KPD +N+LI C +G + A L MVS KP+ TY I+G+
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG-VKPDIVTYGTLINGY 561
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +D + +++G S N+ TY ++ G R + Y + G +
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 621
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L GLC D + L ++ ++ + GR+DE ++
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681
Query: 310 LTKCNQSPEV 319
+ P+V
Sbjct: 682 HSANGLVPDV 691
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 3/246 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V +M G+ PD +NS++ SG A+ + M
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM- 297
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY + ++ G K + + G ++ TY +L+ G
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P + ++ + K+D+ + G N +
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G VD+ E + +P +++ ++ +I D+ D E + M +
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV--YTSLIHGLCTCDKWDKAEELILEMLDR 475
Query: 351 GLSFKS 356
G+ +
Sbjct: 476 GICLNT 481
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 5/248 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G PD +N+L+ AL L +M P+ +Y+ ++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + LK + G + N L+ C+ GR E +
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIF 329
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++TK P++ + +++ YA L ++ + M + G+ ++IC+Y
Sbjct: 330 DSMTKRGLEPDIAT--YRTLLQGYATKGALVEMHALLDLMVRNGIQ-PDHHVFNILICAY 386
Query: 368 FRCAAYDR 375
+ D+
Sbjct: 387 AKQEKVDQ 394
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 13/307 (4%)
Query: 56 KTTLDSVDIFAFNSSQ-------FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
K T D++DI ++ FS++ L+ L + ++A +L D G+
Sbjct: 141 KRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD 200
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLF 166
+ Y ++ K + A + M +GI PD ++S+I A LC + A+ +
Sbjct: 201 VVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA-LCKAQAMDKAMEVL 259
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
MV + P+ TY++ + G+ S G + G NV TY SL++ K
Sbjct: 260 NTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ ++ M G+ P I +L+G + L + + L ++ G + + ++
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ Y + +VD+ + + +P V+ + +I + S +DD +
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC--YGTVIDVLCKSGSVDDAMLYFEQ 436
Query: 347 MGKQGLS 353
M +GL+
Sbjct: 437 MIDEGLT 443
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 5/290 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ T M + + PD FN LI A G ++ A + +M E KP+ TY+A + G
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE-KPDIVTYNALMEG 309
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ S NV + + + G +V Y LI G K + D ++E+ + ++P+
Sbjct: 310 YCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPT 369
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
I +++GLC ++ VK L + G + L+ C+ GR+ E L
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLV 429
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
+ K P ++ ++ ++ Y L + ++ + RM K GL + ++I Y
Sbjct: 430 MMMKKGVKPNIVT--YNAMMDGYCLRNNVNVAKDIFNRMVKSGLE-PDILNYNVLINGYC 486
Query: 369 RCAAYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEM 417
+ D + ++ + A+Y+ L+ G G + +++EM
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEM 536
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 4/185 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++ +V + M PD +N LI A G ++ AL + +M+ + KP
Sbjct: 383 SGRISHVK---KLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVL-VMMMKKGVKP 438
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A + G+ NV+ + + +G ++ Y LI+G K D +
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLF 498
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM +IP I +++GLC ++ V+ L + G + L+ +C+
Sbjct: 499 KEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKT 558
Query: 298 GRVDE 302
D+
Sbjct: 559 QPFDK 563
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 19/290 (6%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ + P A+ +FT ++++GI P A F LI A SL ++ S Y+PN
Sbjct: 67 RMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNL 125
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ I+GF G + + +A G+ + TY +LI+G K + +E
Sbjct: 126 VTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQE 185
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + P++ + +++GLC + + G ++ L+ C +GR
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E+ + L + + N P+ + F+ +I R+ + + + M K+G E
Sbjct: 246 WQEVTQLLTKMVRENVDPDD--YTFNILIDALCKEGRILEAQGVLAMMSKRG------EK 297
Query: 360 VEMVI--------CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
++V CS R ++ +LF +K + Y+ L+ GY
Sbjct: 298 PDIVTYNALMEGYCS--RENVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 2/193 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M +G+KP+ +N+++ +V A +F MV S +P+ Y+ I
Sbjct: 424 ALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG-LEPDILNYNVLI 482
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ VD + ++ +Y SLI G V +EM G
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS 542
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+ C + D+ S + ++ G W + +V C+ ++ E+
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWP-DFYTNHAIVDNLCKGEKLKMAEDA 601
Query: 307 LETLTKCNQSPEV 319
L+ L SP V
Sbjct: 602 LKHLLMHGCSPNV 614
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 9/325 (2%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L R D + G + + Y+ L++ K V A+ + MEA ++PD ++ LI
Sbjct: 311 LRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHG 370
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V A+ L++ M + + PNS + + G G + ++ + I +
Sbjct: 371 LCKQGKVQQAIQLYKEMCFNRIF-PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRP 429
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V Y +I G +K D + R Y+ + I PSI ++ G C RK+ + L
Sbjct: 430 DVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLL 489
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ + G + + L+ YCE G +++L E L + + P V+ ++ +I+
Sbjct: 490 ESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVT--YTVVIKGLC 547
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR---LDLFLDHIKGSYKL 389
+L++ + M +GL+ ++ C C A D +L D + + +
Sbjct: 548 KQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCF---CKAKDMRKAFELLDDMLIHNLEP 604
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVI 414
ATY+ L+ G R G D V+
Sbjct: 605 TPATYNVLIDGLCRYGDVEDADRVL 629
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + ME QG++PD + + G + A + + M++ E KP+ TY I
Sbjct: 239 ALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLI 298
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GN++ + +++GF +NV Y L+ K D + EM + +
Sbjct: 299 CGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQ 358
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC + K+ + K + N ++K CE G + +
Sbjct: 359 PDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMY 418
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
++L N P+V L ++ +I Y +L DVE +V
Sbjct: 419 FDSLIMSNLRPDVTL--YNIMIDGYV---KLGDVEEAV 451
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 9/264 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLD 109
V + + L+S+ + S ++ L+ + + + K +L+LE L K E +
Sbjct: 482 VVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNL----KDIEPTVV 537
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEI 168
Y +I K + + ++ + M A+G+ PD +N++I C C D+ A L +
Sbjct: 538 TYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTII-QCFCKAKDMRKAFELLDD 596
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ +P TY+ I G G+V+ ++ + ++ Y ++I
Sbjct: 597 MLI-HNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKG 655
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D + + +M+ G SI V+ LC R ++ K + +L G ++ + +
Sbjct: 656 DAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFE 715
Query: 289 KLVKCYCELGRVDELEEQLETLTK 312
++ + G V + E L + K
Sbjct: 716 MMLNAFHRAGHVHSVFELLAVMIK 739
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 37/227 (16%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ ++ G P SA +S+I LC LF +E+ P+ +++ +S +
Sbjct: 137 VYNDIKDSG-TPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRY 195
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
LG D ++ + G + +Y LIHG + A + +M G+ P +
Sbjct: 196 CKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDM 255
Query: 250 --------------------PILEKVL--EGL-----------CARRKLDRVKSFLKF-- 274
I++K+L EGL C ++ ++ L+
Sbjct: 256 VTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRR 315
Query: 275 -LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
LL G+++N + L+ C+ G+VDE + L + N P+++
Sbjct: 316 DLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLV 362
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL---SGKVQNVPFAMHVFTSMEAQGI 139
+S P A VLE + + D AC + + + ++Q A V M G+
Sbjct: 112 ASRPGAALAVLE-----AMAADGVAPDTVACTVLVGVYACRLQQFDAAYEVVRWMTDNGV 166
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
PD +++LIC + V AL + ++M+ E PN+ TY + + + G +
Sbjct: 167 APDVVTYSTLICGLCRAQRVAEALGVLDLMLE-EGCHPNAHTYTPIMHAYCTTGMIHEAK 225
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
K + IAAG + + TY LI K F+ VD EE S G IP ++GL
Sbjct: 226 KLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWIPDTITYSTYMDGL 285
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
C ++D+ + + +L G NE L+ C
Sbjct: 286 CRSGRVDKSFALVDRMLSNGLHPNEVTLNILLNGVC 321
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+FT M +GI P+S N ++ + G + AL L + SEE+ N+ TY+ I
Sbjct: 367 LFTDMSKKGIAPNSWTLNIVVHSLCKLGKLRNALCL----MGSEEFVANAITYNTLIHHL 422
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G + + I G + N TY +I + F + G PS
Sbjct: 423 SLSGKANEVYLLLHDMIEEGIAPNETTYSLVIDCLCREEKFSVALSCFYRSCEDGFSPSA 482
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ ++ GL KL + + + ++LG G+ I+ M ++++ +C+ G
Sbjct: 483 --VSSIVRGLINGGKLGELHNLIGWILGQGFAIDVYMYREVIIAFCKKG 529
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 7/201 (3%)
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
V+ W D G + Y+ LI + Q V A+ V M +G P++ + ++
Sbjct: 157 VVRWMTDN---GVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMH 213
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
A +G + A L + M+++ P++ TY+ I S +G + ++ + + G+
Sbjct: 214 AYCTTGMIHEAKKLLDSMIAAG-CAPSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWI 272
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ TY + + G ++ D + M+S G+ P+ L +L G+C K
Sbjct: 273 PDTITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHPNEVTLNILLNGVCRSLTAWAAKCL 332
Query: 272 LKFLLGGGWK---INENMAQK 289
L+ GW IN N +
Sbjct: 333 LECSAELGWDASVINYNTVMR 353
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 1/157 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL L + M S + +P++ + + SS A A A G + + L+
Sbjct: 82 ALQLLDEMRSLLQRRPDAACFTTVAAALSSASRPGAALAVLEAMAADGVAPDTVACTVLV 141
Query: 222 HG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ + + FD+ M G+ P + ++ GLC +++ L +L G
Sbjct: 142 GVYACRLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGC 201
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
N + ++ YC G + E ++ L+++ +P
Sbjct: 202 HPNAHTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAP 238
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 9/253 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
WD + L S KA +V E +++++ G E + Y L + +
Sbjct: 76 LEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEEL--GVERTIKSYDALFKVILRRGRYMM 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M ++G +P FN +I SG V TA FE M S E P+ TY+ I
Sbjct: 134 AKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDM-KSREIMPDVVTYNTMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ + ++ K++ V TY +LI G + D R EEM GI
Sbjct: 193 XGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIK 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEE 305
P+ +L GLC +K+ +S LK ++ +N + +L+ C+ G +D +
Sbjct: 253 PNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAAD 312
Query: 306 QLETLTKCNQSPE 318
L+ + + + E
Sbjct: 313 VLKAMIRLSVPTE 325
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 13/218 (5%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
E + Y LI V V A+ + M+ GIKP++ +++L+ + + A S
Sbjct: 217 EPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARS 276
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ + MV ++ + ISG G++DA A I Y LI
Sbjct: 277 ILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIENY 336
Query: 225 LKARDFDS----VDRFYEEMM------SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
KA +D +DR E+ + +L + PS ++E LC + + +S ++
Sbjct: 337 CKAGQYDQAVKLLDRLIEKDIILRPQSTLHLEPS--AYNPLIEYLCNNGQTAKAESLVRQ 394
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
L+ G + + L++ + + G D E L+ + +
Sbjct: 395 LMKLGVQ-DPTALNALIRGHSQEGSPDSAFELLKIMLR 431
>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
Length = 700
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 6/237 (2%)
Query: 60 DSVDIFA-FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
D D+ A F S F DA++ ++P+ A LVL L+ + E L Y + +
Sbjct: 126 DVSDVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVIL--YNVTMKVF 183
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKP 177
K +++ + +F M +G+KPD+A F +LI CA C G A+ FE M S +P
Sbjct: 184 RKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQC-GLPNRAVEWFEKMPSFG-LEP 241
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ T A I + GNV+ Y + ++ T+ +LI A ++D Y
Sbjct: 242 DNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIY 301
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
EEM SLG+ P++ I ++L+ + ++ + K L+ G++ N + L++ Y
Sbjct: 302 EEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAY 358
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D + G E YA LI G+ + A+ ++ M+ +G++ ++N+L+ C G
Sbjct: 338 DLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIG 397
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A +F+ M SS +P+S T+ + I+ +S G V AGF +
Sbjct: 398 YVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVL 457
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLI KA+ D V R +E+++ LGI P
Sbjct: 458 TSLIQCYGKAKQVDDVVRTFEQVLELGIEP 487
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ VF +M+ G+ P FNSL+ L G A LF+ M+ + P++ T++ I
Sbjct: 184 SIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI 243
Query: 187 SGFSSLGNVDAMNKWY-------------------------------AANIAAG------ 209
GF VD W+ A N+ G
Sbjct: 244 RGFCMNSMVDE-GFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSP 302
Query: 210 -FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
S NV TY +LI G +D EM+S G+ P+ +++GLC +KLD++
Sbjct: 303 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKI 362
Query: 269 KSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K L+ ++G GG+ + L+K +C +G+++E E +++ P+
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 14/205 (6%)
Query: 118 SGKVQNVPFAMHVFTSM--EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+GKV+ A +V M ++ + P+ + +LI D+ ALSL MVS
Sbjct: 284 AGKVK---IAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS-RGL 339
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN TY+ I G +D + + + GF + T +LI +
Sbjct: 340 KPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAF 399
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+E+M L + P ++ LC R R + F L +++ + LV Y
Sbjct: 400 SVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 459
Query: 295 -------CELGRVDELEEQLETLTK 312
C G+ + E L K
Sbjct: 460 NPMFEYLCSNGKTKKAERVFRQLMK 484
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-SLFEIM 169
Y LI Q++ A+ + M ++G+KP+ +N+LI LC + + + E M
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQG-LCEAQKLDKIKEILEGM 369
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + P++ T + I ++G ++ + + TY L+ + D
Sbjct: 370 VGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGD 429
Query: 230 FDSVDRFYEEMMS-------LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
F + F++E+ +G P + + E LC+ K + + + L+ G
Sbjct: 430 FRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 3/165 (1%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG ++ V A F SM ++G PD +N L+ A G A+ LF+ +++ +
Sbjct: 191 LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA-KG 249
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y P++ TY++ + G + N+D + + +A+G + N TY ++ G +A+ D
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH 309
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ EEM +G +P + +L+GLC +D+ ++ G
Sbjct: 310 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 119/258 (46%), Gaps = 4/258 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
S +++++L+ + + K + L + + KG E + Y+ +I+ K V
Sbjct: 73 GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAE--KGFEPDVVTYSTIISGLCKTGKVT 130
Query: 126 FAMHV-FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + F M +G ++ +N+LI ++ A L E M +S+ Y P++ TY+
Sbjct: 131 EALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEM-ASKGYVPDNITYNT 189
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+SG +G V +++ + + G+S +V Y L+ K D + ++++++ G
Sbjct: 190 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKG 249
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+P +L GL + +D + K ++ G N ++ +C +VD+
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH 309
Query: 305 EQLETLTKCNQSPEVLLH 322
+ LE ++K P+V+ +
Sbjct: 310 KVLEEMSKIGAVPDVVTY 327
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 6/310 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EY LI K V A ++ M + G++P +NSL+ A + A+ LF+ M
Sbjct: 45 EYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM 104
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
+ + ++P+ TY ISG G V +A+ + I G S N Y +LI+G K
Sbjct: 105 -AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDE 163
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + + EEM S G +P +L GLC K+ K F + G+ +
Sbjct: 164 NIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYN 223
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ + G+ DE + + + P+ + ++ I+ A +D+ E +M
Sbjct: 224 GLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVT--YNSILLGLARKSNMDEAEEMFKKMV 281
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLS 407
G + A +V+ + R D L+ + K TY+ L+ G + L
Sbjct: 282 ASGCAPNGAT-YSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLV 340
Query: 408 GKLDSVINEM 417
K + + M
Sbjct: 341 DKAHELFSTM 350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 4/233 (1%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDK 99
N ++S L ++ VS+ K DS+ ++ +++ L+ +L K ++ D
Sbjct: 188 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEG--KTDEAMKLFKDV 245
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+ KG Y ++ + N+ A +F M A G P+ A ++ ++ + V
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKV 305
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A + E M S P+ TY+ + G VD ++ ++ + G + ++ +Y
Sbjct: 306 DDAHKVLEEM-SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 364
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+++G K ++ M+ ++P + +++GLC KLD K L
Sbjct: 365 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 417
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%)
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
E PN T+ + F G + K + + G S + Y LI G K D
Sbjct: 3 ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+R YEEM+S+G+ PSI +L C K+ K + G++ + ++
Sbjct: 63 NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISG 122
Query: 294 YCELGRVDELEEQL 307
C+ G+V E E L
Sbjct: 123 LCKTGKVTEALEML 136
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 5/273 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ S +++A++ +L +S A+ L L + N + + G+++
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE-- 170
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ V M G P++ +N+L+ A +G++ A + +M KPN T+++
Sbjct: 171 -AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSM 229
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
++G G ++ K + + G + +V +Y +L+ G K + EM G+
Sbjct: 230 VNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL 289
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P + ++ C L++ + + + G ++NE L+ +C+ G +D+
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+E + KC P V+ ++ +I Y R+D
Sbjct: 350 AVEEMRKCGIQPSVVC--YNALINGYCKLGRMD 380
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 141/344 (40%), Gaps = 51/344 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y L++ KV + ++ VF+ M +G+ PD F SLI A +G++ A++L
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320
Query: 167 -------------------------EIMVSSEEYK-----PNSKTYDAFISGFSSLGNVD 196
+ +++ EE + P+ Y+A I+G+ LG +D
Sbjct: 321 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A +V TY ++I G K + DS + ++M+ G++P ++
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++L+ + +L G + +E L+ +C+ G V++ + + +
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500
Query: 317 PEVLLH--FFSG-------------IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
P+V+ + +G + +LY D+++Y + FKS +
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
C D+ ++ + ++KL + Y L+ G+ R G
Sbjct: 561 KGFCMKGLMKEADK--VYQSMLDRNWKLDGSVYSILIHGHCRGG 602
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 3/213 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +G+ PD +N+L+ G + +L++F M + P+ T+ + I
Sbjct: 242 ARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLI 300
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GN++ A G +N T+ +LI G K D EEM GI
Sbjct: 301 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQ 360
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ ++ G C ++D + ++ + K + ++ YC++G +D +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + K P+ + +S +IR RL+D
Sbjct: 421 NQKMLKKGVLPDAIT--YSSLIRGLCEEKRLND 451
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 4/173 (2%)
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+DA I ++SL A +AG++ +V Y +++ +L S RF M+
Sbjct: 86 FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLL-ALSDASLPSARRFLSSML 144
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G+ P++ ++ LCAR +L+ + + G G N LV +C G +D
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204
Query: 302 ELEEQLETL-TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
E + + + N P ++ F+ ++ + R++ M ++GL+
Sbjct: 205 GAERVVSLMREEGNAKPNLVT--FNSMVNGLCKAGRMEGARKVFDEMVREGLA 255
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A+ + M +G+ PD ++ LI S A L +
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL-FKL 529
Query: 171 SSEEYKPNSKTYDAF---------------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
E+ P++ YDA + GF G + +K Y + + + ++
Sbjct: 530 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 589
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
Y LIHG + + F+++M+ G P+
Sbjct: 590 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 123/271 (45%), Gaps = 8/271 (2%)
Query: 52 VSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
+ +K L+ +D+ F+ F++++LI L + ++A +L + + N
Sbjct: 329 IGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVT 388
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI+ K V A + + ++GI PD FNSLI + + A+ LFE
Sbjct: 389 ---YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFE 445
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M ++ P+ TY+ I S G ++ ++G S NV TY +LI G K
Sbjct: 446 EM-KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKN 504
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + + ++EM GI ++ +++GLC R+++ + +L G K ++
Sbjct: 505 KRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTY 564
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ +C G + + + ++T+T P+
Sbjct: 565 NSLLTYFCRAGDIKKAADIVQTMTSNGCEPD 595
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 1/193 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + M ++GIKPD FN LI A + + A+ + E M S P+ KT+ + GF
Sbjct: 198 VNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEM-GSYGLSPDEKTFTTLMQGF 256
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
GN++ + +AAG + T L+HG K + V F +EM + G P
Sbjct: 257 IEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDR 316
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC + L +L G+ + L+ C+LG V+E E L
Sbjct: 317 FTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQ 376
Query: 310 LTKCNQSPEVLLH 322
+ + SP + +
Sbjct: 377 MILRDFSPNTVTY 389
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 2/166 (1%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+M L+G + Y LI K + V A + M +G+KPD +NSL+
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+GD+ A + + M +S +P+S TY I G S G V+ ++ G + Q
Sbjct: 574 AGDIKKAADIVQTM-TSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ 632
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
TY +I + + R + EMM G P + V GLC+
Sbjct: 633 TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCS 678
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 1/181 (0%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
N AM +F M+ +G PD +N LI + G + ALSL + M SS + N
Sbjct: 434 TNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSR-NVV 492
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I GF ++ + + G S NV TY +LI G K R + + ++M
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQM 552
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G+ P +L C + + ++ + G + + L+ + GRV
Sbjct: 553 LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRV 612
Query: 301 D 301
+
Sbjct: 613 E 613
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/350 (20%), Positives = 134/350 (38%), Gaps = 48/350 (13%)
Query: 109 DEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE + G ++ N+ A+ + M A G + N L+ G + LS
Sbjct: 245 DEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFI 304
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M S+E ++P+ T+++ ++G +G+V + + GF ++ TY SLI G K
Sbjct: 305 DEM-SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK 363
Query: 227 ---------------ARDFDSVDRFYEEMMSL--------------------GIIPSIPI 251
RDF Y ++S GI+P +
Sbjct: 364 LGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 423
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++GLC + + G +E L+ C GR++E L+ +
Sbjct: 424 FNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEME 483
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFR 369
S V+ ++ +I + + R+++ E M QG+S ++ +C R
Sbjct: 484 SSGCSRNVVT--YNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRR 541
Query: 370 CAAYDRL--DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+L + ++ +K + TY+ L+ + RAG K ++ M
Sbjct: 542 VEEAAQLMDQMLMEGLKPD----KFTYNSLLTYFCRAGDIKKAADIVQTM 587
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 106/256 (41%), Gaps = 5/256 (1%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F F+++ L+ L + K ++ R+ + +G + + + LI + +
Sbjct: 170 FGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRM--VSRGIKPDVTTFNILIKALCRAHQI 227
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TYD 183
A+ + M + G+ PD F +L+ + G++ AL + E MV++ P+S T +
Sbjct: 228 RPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG--CPSSNVTVN 285
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G+ G ++ + + GF + T+ SL++G + + M+
Sbjct: 286 VLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQE 345
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G P I ++ GLC +++ L ++ + N L+ C+ +V+E
Sbjct: 346 GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA 405
Query: 304 EEQLETLTKCNQSPEV 319
E LT P+V
Sbjct: 406 TELARVLTSKGILPDV 421
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
E + Y ++ K + + + + M +G+ P +N+LI G + AL
Sbjct: 351 EPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALE 410
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ +M S +PN +TY+ I GFS +V + + + + ++ TY SLIH
Sbjct: 411 ILGLM-ESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQ 469
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
KA FDS + + + G++P ++ LC ++++ L G K NE
Sbjct: 470 CKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANE 529
Query: 285 NMAQKLVKCYCELGRVDELEEQLETL 310
M L+ +C+ G++DE LE +
Sbjct: 530 VMYTALIDGHCKAGKIDEAISLLERM 555
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 95 WRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
++L +LK N D+ Y+ I K + + A +F S++ +GIK + ++ +LI
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+G + A+SL E M SE+ PNS TY++ I G G V G
Sbjct: 539 HCKAGKIDEAISLLERM-HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKP 597
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
V TY LI L+ DFD +R + +M+S G P + + C + + +
Sbjct: 598 TVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMM 657
Query: 273 KFLLGGGWKINENMAQKLVKCYCELG 298
++ G + L+ Y LG
Sbjct: 658 ARMIEAGVMPDSLTYTLLISAYERLG 683
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ PDS + SLI + DV +A +F +M ++ + N +Y I G G +D
Sbjct: 244 GLSPDSFTYTSLILGYCRNNDVNSAYKVFNMM-PNKGCRRNEVSYTTIIHGLCEAGRIDE 302
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSL-KARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ V+TY +IH R+ + +D F EM P++ ++
Sbjct: 303 GISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLF-NEMRERSCEPNVHTYTVMV 361
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ +C RKLD + L ++ G + L++ YCE GR++ E L + N
Sbjct: 362 DAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCR 421
Query: 317 P 317
P
Sbjct: 422 P 422
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 6/207 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +V A VF M +G + + + ++I +G + +SLF+ M
Sbjct: 252 YTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMR 311
Query: 171 SSEEYKPNSKTYDAFISG-FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ Y P +TY I F + N++ M+ + NV TY ++ K R
Sbjct: 312 EDDCY-PTVRTYTVIIHALFGNDRNLEGMDLFNEMR-ERSCEPNVHTYTVMVDAMCKERK 369
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R EMM G++PS+ ++ G C +++ L + + NE +
Sbjct: 370 LDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNE 429
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQS 316
L+ C + + + + L+K +S
Sbjct: 430 LI---CGFSKRKHVHKAMTLLSKMLES 453
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 124/322 (38%), Gaps = 11/322 (3%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
M KG + Y LI + + A+ + ME+ +P+ +N LIC V
Sbjct: 381 MEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHV 440
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A++L M+ S + P+ TY++ I G+ D+ K G + TY
Sbjct: 441 HKAMTLLSKMLES-KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSV 499
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
I K++ + + + GI + + +++G C K+D S L+ +
Sbjct: 500 FIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED 559
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
N + L+ C+ G+V E +E ++K P V + L R D
Sbjct: 560 CLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTI-----LIEEMLREGD 614
Query: 340 VEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLD-LFLDHIKGSYKLRRATYD 395
+++ R+ Q +SF DV I +Y + + I+ TY
Sbjct: 615 FDHA-NRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYT 673
Query: 396 FLVAGYRRAGLSGKLDSVINEM 417
L++ Y R GL+ +V+ M
Sbjct: 674 LLISAYERLGLAYDAFNVLKRM 695
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 80/225 (35%), Gaps = 2/225 (0%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KML+ L Y LI + K + A + ++ G+ PD ++ I
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S + A LF + + K N Y A I G G +D + N
Sbjct: 507 SKRMEEACDLFNSL-KEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSS 565
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI+G K E M +G+ P++ ++E + D +
Sbjct: 566 TYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQM 625
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ G K + + YC G V E E + + + P+ L
Sbjct: 626 VSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSL 670
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T + ++ +S +GN+ N + + AG S + TY SLI G + D +S +
Sbjct: 212 PNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKV 271
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ M + G + ++ GLC ++D S K
Sbjct: 272 FNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFK 308
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 3/158 (1%)
Query: 148 SLICACLCSGDVVTALSLFEIMVSSE---EYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
S+I AC+ D+ L M + ++K + ++Y+ + + +D M + Y
Sbjct: 145 SMIKACVSVDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTE 204
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ N+ T ++++ K + + + ++ G+ P ++ G C
Sbjct: 205 MLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNND 264
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ + G + NE ++ CE GR+DE
Sbjct: 265 VNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDE 302
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
GK++N A+ +F ME GI P+ +N +I +G + A L E M + + +P
Sbjct: 233 GGKMEN---AIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM-TVKGVQP 288
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N KTY A I+G L D +N I AGF+ NV + +LI G K + + +
Sbjct: 289 NLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIK 348
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M+S I P+ L +++G C +++ ++ L+ +L G I+ + +V C+
Sbjct: 349 DVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCK 407
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 16/245 (6%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+A I GF + G V+ + G ++ TY L+ G D + ++E
Sbjct: 502 TYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 561
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G+I +I ++EG C +++ V++ LL ++N + ++K +C+ G V
Sbjct: 562 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNV 621
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
+ LE + P +S +I ++D ++ + M K+G V
Sbjct: 622 AAALQLLENMKSKGILPNCAT--YSSLIHGVCNIGLVEDAKHLIDEMRKEGF-------V 672
Query: 361 EMVICSYFRCAAYDRL-------DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
V+C Y +L +L+ I + + TY ++ GY + G K +++
Sbjct: 673 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 732
Query: 414 INEMK 418
+ +MK
Sbjct: 733 LIKMK 737
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + NV A+ + +M+++GI P+ A ++SLI G V A L + M
Sbjct: 608 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEM- 666
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN Y A I G+ LG +D + I+ N TY +I G K +
Sbjct: 667 RKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNM 726
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + +M GI+P + + G C +D
Sbjct: 727 EKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 763
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 38/282 (13%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
E + +KG + L Y LI K+ H+ M G P+ VFN+LI
Sbjct: 275 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDG 334
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++ AL + ++M+S + P S T + + GF ++ +++G S+
Sbjct: 335 YCKMGNIEGALKIKDVMIS-KNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSI 393
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS------------------------ 248
+ S++H K + S RF + M+S PS
Sbjct: 394 HPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW 453
Query: 249 IPILEK-----------VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+LEK ++ GLC KL +K +L G ++ L+ +C
Sbjct: 454 FRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNE 513
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
G+V+ E +TK P++ + F ++R +LDD
Sbjct: 514 GKVEGCFRLREEMTKRGIQPDIYTYNF--LLRGLCNVGKLDD 553
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 112/256 (43%), Gaps = 8/256 (3%)
Query: 118 SGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
S + +N+ F A+ VF + +G P N + + + + + +F +M SE
Sbjct: 159 STQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVM--SEGA 216
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ ++ I+ G ++ + + G S NV TY +I+G + D+
Sbjct: 217 CPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFE 276
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
E+M G+ P++ ++ GL D+V L ++G G+ N + L+ YC
Sbjct: 277 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYC 336
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
++G ++ + + + N +P + + +++ + SD+++ E ++ + GLS
Sbjct: 337 KMGNIEGALKIKDVMISKNITPTSVTLY--SLMQGFCKSDQIEHAENALEEILSSGLSIH 394
Query: 356 SAEDVEMV--ICSYFR 369
+V +C FR
Sbjct: 395 PDNCYSVVHWLCKKFR 410
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + V A H+ M +G P+ + +LI G + TA S + M+
Sbjct: 643 YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI 702
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY I G+ LGN++ N +G +V TY L +G KA D
Sbjct: 703 SFNIH-PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDM 761
Query: 231 DSVDRFYEEMMSLGI 245
D+ + ++M + G+
Sbjct: 762 DNAFKVCDQMATEGL 776
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/266 (18%), Positives = 105/266 (39%), Gaps = 28/266 (10%)
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
F M+ S ++P+ + G G +++A W+ + G + T +LIHG
Sbjct: 417 FTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRL-LEKGSPASKVTSNALIHGL 475
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
A R +EM+ G+ ++ G C K++ G +++ E
Sbjct: 476 CGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE-----------GCFRLRE 524
Query: 285 NMAQK-----------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
M ++ L++ C +G++D+ + + + H + ++ Y
Sbjct: 525 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNI--HTYGIMMEGYCK 582
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR-A 392
++R++DVE + + + S ++I ++ + L+++K L A
Sbjct: 583 ANRIEDVENLFNELLSKKMELNSIV-YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 641
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G GL +I+EM+
Sbjct: 642 TYSSLIHGVCNIGLVEDAKHLIDEMR 667
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 6/236 (2%)
Query: 100 MLKGNESCLDEYACLIAL-SGKVQNVPFAMHVFTSME---AQGIKPDSAVFNSLICACLC 155
+L+ + +C+ + L G QN FA FT E G + D ++S+I
Sbjct: 393 LLEKDVACIPDTVTFGTLIHGLCQN-GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCN 451
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G +V A+ ++E M + KPNS Y+A ISGF + + Y+ G S V
Sbjct: 452 VGRLVDAVKVYEKM-DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI 510
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + EM+ G P I ++ GL + +K+D S K +
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L G K++ M L+ C G+VDE + + P L+ + + + LY
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLY 626
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 5/204 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K + A+ + M ++PD +N+L+ C +G+ + +++ +V
Sbjct: 196 YSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLV 255
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN TY+ + G G + + + +A +V TY LIHG ++ D
Sbjct: 256 KDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDV 315
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--Q 288
D R Y E++ G++ + +++G C + RV+ KF G+ N+
Sbjct: 316 DGAARVYSEIIKTGLVIDAAMYNSLVKGFC---QAGRVQEAWKFWDSAGFAGLRNLRTYN 372
Query: 289 KLVKCYCELGRVDELEEQLETLTK 312
++K + G VDE E + L K
Sbjct: 373 IMIKGLFDSGMVDEAIELWDLLEK 396
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F S+ + + PD +++L+C + AL L + M S +P+ Y+A +
Sbjct: 177 AVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRS-RVQPDVVCYNALL 235
Query: 187 SGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + M W G N+ TY ++ G K F V +E M++ +
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNL 295
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + ++ GLC +D ++ G I+ M LVK +C+ GRV E
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQE 352
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ + +G+K D + N LI +G V AL +F M + PN TY+ +
Sbjct: 563 ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLM 622
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G +D + + G ++ +Y + I G + +E++S GII
Sbjct: 623 DGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGII 682
Query: 247 PSI 249
P++
Sbjct: 683 PTV 685
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 5/166 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A V M G PD + SLI + ALS+++ +
Sbjct: 512 YNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWK-QI 570
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ K + ++ I G S G VD A++ + N+ TY +L+ G +
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGY 630
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
D + + G+ P I ++GLC+ DR+ ++ L
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGLCS---CDRIHEGIQLL 673
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G+VQ A + S G++ + +N +I SG V A+ L++++ P
Sbjct: 347 AGRVQE---AWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP 402
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRF 236
++ T+ I G G + + +G ++V +Y S+I+G R D+V +
Sbjct: 403 DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV-KV 461
Query: 237 YEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGG 278
YE+M G P+ I ++ G C R D V+ + K G
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 5/204 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K + A+ + M G++PD +N+L+ C +G+ + +++ +V
Sbjct: 196 YSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLV 255
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN TY+ + G G + + + +A +V TY LIHG ++ D
Sbjct: 256 KDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDV 315
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--Q 288
D R Y E++ G++ + +++G C + RV+ KF G+ N+
Sbjct: 316 DGAARVYSEIIKTGLVIDAAMYNSLVKGFC---QAGRVQEAWKFWDSAGFAGLRNLRTYN 372
Query: 289 KLVKCYCELGRVDELEEQLETLTK 312
++K + G VDE E + L K
Sbjct: 373 IMIKGLFDSGMVDEAIELWDLLEK 396
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 6/236 (2%)
Query: 100 MLKGNESCLDEYACLIAL-SGKVQNVPFAMHVFTSME---AQGIKPDSAVFNSLICACLC 155
+L+ + +C+ + L G QN FA FT E G + D ++S+I
Sbjct: 393 LLEKDVACIPDTVTFGTLIHGLCQN-GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCN 451
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G +V A+ ++E M + KPNS Y+A ISGF + + Y+ G S V
Sbjct: 452 VGRLVDAVKVYEKM-DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI 510
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + EM+ G P I ++ GL + +K+D S K +
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L G K++ M L+ C G+VDE + + P L+ + + + LY
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLY 626
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F S+ + + PD +++L+C + AL L + M S +P+ Y+A +
Sbjct: 177 AVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRS-GVQPDVVCYNALL 235
Query: 187 SGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + M W G N+ TY ++ G K F V +E M++ +
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNL 295
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + ++ GLC +D ++ G I+ M LVK +C+ GRV E
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQE 352
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ + +G+K D + N LI +G V AL +F M + PN TY+ +
Sbjct: 563 ALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLM 622
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G +D + + G ++ +Y + I G + +E++S GII
Sbjct: 623 DGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGII 682
Query: 247 PSI 249
P++
Sbjct: 683 PTV 685
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 41/307 (13%)
Query: 42 PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML 101
P I RLL++ IK+ D+ A L+ S + + P L+ L ++
Sbjct: 11 PPIHRLLEL----IKSEPDATAALAHLE-------LLVSTRPAFPPPQPLLFHL-LRRLA 58
Query: 102 KGNESCLDEYACLIALSGKVQNVP----FAMHVFTSMEAQGIKPDSAV--FNSLICACLC 155
+ S L CL+ L ++++ P A V S ++ I PD+A+ F +L C
Sbjct: 59 TSSPSHL---PCLLNLLPRLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGC 115
Query: 156 SGDVVTALSLFEIMVSSEEYK-------------------PNSKTYDAFISGFSSLGNVD 196
+ + + +L + V + + PN +TY+ + + G++D
Sbjct: 116 NPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLD 175
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + + TY +L+ G K D +EM G+ P + +L
Sbjct: 176 RAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALL 235
Query: 257 EGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
G + ++V + + K + G + N ++ C+ GR E+ E E + N
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNL 295
Query: 316 SPEVLLH 322
P+V+ +
Sbjct: 296 QPDVITY 302
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 5/166 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A V M G PD + SLI + ALS+++ +
Sbjct: 512 YNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWK-QI 570
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ K + ++ I G S G VD A++ + N+ TY +L+ G +
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGY 630
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
D + + G+ P I ++GLC+ DR+ ++ L
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGLCS---CDRIHEGIQLL 673
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G+VQ A + S G++ + +N +I SG V A+ L++++ P
Sbjct: 347 AGRVQE---AWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIP 402
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRF 236
++ T+ I G G + + +G ++V +Y S+I+G R D+V +
Sbjct: 403 DTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAV-KV 461
Query: 237 YEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGG 278
YE+M G P+ I ++ G C R D V+ + K G
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ VF +M+ G+ P FNSL+ L G A LF+ M+ + P++ T++ I
Sbjct: 184 SIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI 243
Query: 187 SGFSSLGNVDAMNKWY-------------------------------AANIAAG------ 209
GF VD W+ A N+ G
Sbjct: 244 RGFCMNSMVDE-GFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSP 302
Query: 210 -FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
S NV TY +LI G +D EM+S G+ P+ +++GLC +KLD++
Sbjct: 303 NLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKI 362
Query: 269 KSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K L+ ++G GG+ + L+K +C +G+++E E +++ P+
Sbjct: 363 KEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 413
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 14/205 (6%)
Query: 118 SGKVQNVPFAMHVFTSM--EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+GKV+ A +V M ++ + P+ + +LI D+ ALSL MVS
Sbjct: 284 AGKVK---IAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVS-RGL 339
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN TY+ I G +D + + + GF + T +LI +
Sbjct: 340 KPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAF 399
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+E+M L + P ++ LC R R + F L +++ + LV Y
Sbjct: 400 SVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 459
Query: 295 -------CELGRVDELEEQLETLTK 312
C G+ + E L K
Sbjct: 460 NPMFEYLCSNGKTKKAERVFRQLMK 484
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-SLFEIM 169
Y LI Q++ A+ + M ++G+KP+ +N+LI LC + + + E M
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQG-LCEAQKLDKIKEILEGM 369
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + P++ T + I ++G ++ + + TY L+ + D
Sbjct: 370 VGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGD 429
Query: 230 FDSVDRFYEEMMS-------LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
F + F++E+ +G P + + E LC+ K + + + L+ G
Sbjct: 430 FRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG 486
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 6/174 (3%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G KP A +N + +G A +F ++ P S Y I G G +A
Sbjct: 451 GCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS--YKTLILGHCREGTPEA 508
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ F + +TY +I G LK D + E+M+ +P+ I +L
Sbjct: 509 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILA 568
Query: 258 GL----CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
L CA VK L+ + ++ + ++LV C+ ++ E ++ L
Sbjct: 569 ALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKML 622
>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + + ++ A+ +F + +G KPD FN++IC C C+ + A+ LF M
Sbjct: 625 YNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMIC-CYCNFKRLDDAVQLFAKM 683
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+SE+ +PN+ T+ I F G +D ++ + G N+ TY LIHG K++
Sbjct: 684 -TSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQS 742
Query: 230 -FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+S + Y EM+ I P+I +++GLC R + + L +
Sbjct: 743 MMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYT 802
Query: 289 KLVKCYCELGRVDE 302
L++ YC++GR+ E
Sbjct: 803 ILIRGYCKVGRLTE 816
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+GIK D F+S + A + GD+ + +++ M++ E PN + I GF G +
Sbjct: 371 KGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLN-EGISPNVVSCSILIKGFCQNGRIL 429
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + GF ++ TY +LI G K+ + YE+M+ P + ++
Sbjct: 430 EACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLI 489
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
GLC + + F + G N L+ +C L
Sbjct: 490 NGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRL 530
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 65/341 (19%), Positives = 121/341 (35%), Gaps = 41/341 (12%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y+ LIA K N+ +++ M + +PD+ V++ LI G V A
Sbjct: 442 GFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDA 501
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L F + PN T + + F L + K Y + TY LI
Sbjct: 502 LRFF-FQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIK 560
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK------------------ 264
G+ + D + +M+ P + +++GLC +K
Sbjct: 561 GAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAP 620
Query: 265 -----------------LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
L+ ++ G K + ++ CYC R+D+ +
Sbjct: 621 DIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLF 680
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+T P + F+ +I + R+DD +M ++G + +I Y
Sbjct: 681 AKMTSEQLRPNAIT--FTILIDAFCREGRMDDAMLMFSKMLEEGPE-PNLVTYSCLIHGY 737
Query: 368 FRCAAY--DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
F+ + L L+ + ++ + +Y L+ G + GL
Sbjct: 738 FKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGL 778
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 81/227 (35%), Gaps = 3/227 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V + ++ G D N ++ D+ A F ++V KPN T+
Sbjct: 253 VEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGP-KPNVVTFS 311
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I + GN+D + G + ++ Y LI G KA + R +
Sbjct: 312 TLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDK 371
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI + ++ L RV K +L G N L+K +C+ GR+ E
Sbjct: 372 GIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEA 431
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ K P +L +S +I + S L D Y M K+
Sbjct: 432 CGLFVQILKLGFEPSILT--YSALIAGFCKSGNLRDGFYLYEDMIKK 476
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/280 (18%), Positives = 121/280 (43%), Gaps = 5/280 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ +F + +GI V L+ + + S V + + + S+ +P S Y+ +
Sbjct: 186 SVDIFMHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFS-VYEFVM 244
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F + G V+ +++ A + GF +++ T ++ G D D ++ ++ +G
Sbjct: 245 NRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPK 304
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++ C LD+ + G G + + L+ + GR+++ +
Sbjct: 305 PNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRL 364
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L L ++ ++ + FS + Y L V RM +G+S + ++I
Sbjct: 365 L--LVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGIS-PNVVSCSILIKG 421
Query: 367 YFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ + + LF+ +K ++ TY L+AG+ ++G
Sbjct: 422 FCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSG 461
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 3/216 (1%)
Query: 109 DEYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D YA C I K+ +V A+ V+ M + PD FN LI +G+ A +LF
Sbjct: 531 DTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALF 590
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E MV+ + +P+ T+ A I G G V+A G NV TY +L+HG K
Sbjct: 591 EEMVA-KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + +F EEM+S G +P ++ LC + D + L GW +
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
LV + G+ ++ LE + P+V+ +
Sbjct: 710 YNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTY 745
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 53/333 (15%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LIA + K N A +F M A+ ++PD F +LI +G V A + ++M +
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM-GNL 631
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN TY+A + G G ++ ++ +++G + TY SL++ +A D
Sbjct: 632 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW------------- 280
+ E+ S G P +++GL + ++ + L+ ++G G
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDS 751
Query: 281 -----------KINENMAQKLVKC--------------YCELGRVDELEEQLETLTK--C 313
+++ +M+ ++ +C C++GR+DE E ++ + + C
Sbjct: 752 LCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSC 811
Query: 314 NQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYF 368
+ P ++ + F G+ + +++ + + R + G S + + D +I
Sbjct: 812 DVLPNIITYNSFLDGLCKQSMMAEACE-----LMRSLRDG-SLRVSPDTVTFSTLIDGLC 865
Query: 369 RCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAG 400
+C D ++F D I G Y TY+ L+ G
Sbjct: 866 KCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNG 898
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 26/305 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M +F + +G PD +N+LI + +GD+ A L M SS PN TY I
Sbjct: 235 GMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM-SSRSCVPNVVTYSVLI 293
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMM--- 241
+G +G +D + V N+ TY S + G K S+ E+M
Sbjct: 294 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK----QSMTAEACELMRSL 349
Query: 242 ---SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
SL + P +++GLC ++D S ++ GG+ N LV C+
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG-----LS 353
+++ +E++ +P+V+ +S ++ + + R+D+ + M +G ++
Sbjct: 410 KMERAHAMIESMVDKGVTPDVIT--YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT 467
Query: 354 FKSAEDVEMVICSYFRCAAYDRLDLFLD-HIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
F S D +C R + + +F D +K + TY L+ G R G +G+ ++
Sbjct: 468 FNSIIDG---LCKSDR--SGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEA 522
Query: 413 VINEM 417
+++ M
Sbjct: 523 LLDAM 527
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 39/301 (12%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++AL+ L ++ ++A ++E +DK + + + Y+ L+ K V A+ +
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPD---VITYSVLVDAFCKASRVDEALEL 452
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTY------- 182
M ++G P+ FNS+I LC D A +F+ M P+ TY
Sbjct: 453 LHGMASRGCTPNVVTFNSIIDG-LCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGL 511
Query: 183 -------------DAF-----------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
DA I+G S LG+V + Y + + T+
Sbjct: 512 FRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFN 571
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
LI G+ KA +F+ +EEM++ + P + +++GLC +++ + L +
Sbjct: 572 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 631
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G N LV C+ GR++E + LE + P+ + + ++ + R D
Sbjct: 632 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT--YGSLVYALCRASRTD 689
Query: 339 D 339
D
Sbjct: 690 D 690
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD+ FN I GDV AL ++ M+ E P+ T++ I+G GN + +
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELE-LVPDKVTFNILIAGACKAGNFEQASA 588
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ +A +V T+ +LI G KA ++ + M +LG+ P++ ++ GLC
Sbjct: 589 LFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLC 648
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+++ FL+ ++ G + LV C R D+ + + L P+ +
Sbjct: 649 KSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTV 708
Query: 321 LH 322
+
Sbjct: 709 TY 710
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS--SEEYKPNSKTYDA 184
A+ V M +G PD +N+LI + +GD+ A L M S S PN TY
Sbjct: 726 AITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSV 785
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSV--NVQTYES----------------------- 219
I+G +G +D + + V N+ TY S
Sbjct: 786 LINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRD 845
Query: 220 --------------LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
LI G K D +++M++ G +P++ ++ GLC K+
Sbjct: 846 GSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+R + ++ ++ G + LV +C+ VDE E L + +P V+ F+
Sbjct: 906 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVT--FN 963
Query: 326 GIIRLYALSDR 336
II SD+
Sbjct: 964 SIIDGLCKSDQ 974
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 50/273 (18%)
Query: 154 LC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC +G+ AL +F ++ + P TY+ I+G + A + + + G
Sbjct: 190 LCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHP 249
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V TY +LI KA D + R + +M S +P++ ++ GLC
Sbjct: 250 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLC------------ 297
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLH--FFSGII 328
++GR+DE E ++ +T+ C+ P ++ + F G+
Sbjct: 298 -----------------------KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLC 334
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDR-LDLFLDHIK 384
+ ++ + + R + G S + + D +I +C D +F D I
Sbjct: 335 KQSMTAEACE-----LMRSLRDG-SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA 388
Query: 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
G Y TY+ LV G +A + ++I M
Sbjct: 389 GGYVPNVITYNALVNGLCKADKMERAHAMIESM 421
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 34/218 (15%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ L+ L ++ ++A ++E +DK + + + Y+ L+ K +V A+ +
Sbjct: 891 TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPD---VITYSVLVDAFCKASHVDEALELL 947
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M ++G P+ FNS+I LC D A +F+ M P+ TY I G
Sbjct: 948 HGMASRGCTPNVVTFNSIIDG-LCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLF 1006
Query: 191 SLG-------NVDAMNK--WYAANIAA-GFS------------------VNVQTYESLIH 222
G +DAM YA N G S + T+ LI
Sbjct: 1007 RTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIA 1066
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
G+ KA +F+ +EEM++ + P + +++GLC
Sbjct: 1067 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 1104
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAF 185
A +VF M A G P+ +N L+ LC D + A ++ E MV + P+ TY
Sbjct: 873 ACNVFDDMIAGGYVPNVVTYNVLMNG-LCKTDKMERAHAMIESMVD-KGVTPDVITYSVL 930
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM-MSLG 244
+ F +VD + + G + NV T+ S+I G K+ + +++M + G
Sbjct: 931 VDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHG 990
Query: 245 IIPSIPILEKVLEGL 259
+ P +++GL
Sbjct: 991 LAPDKITYCTLIDGL 1005
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YAC +++ A V M A G+ PD +++LI +G V AL + ++M+
Sbjct: 147 YAC------RLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLML 200
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN+ TY + + + G + + IA+GF+ + TY L+ K F
Sbjct: 201 E-EGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAF 259
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM---- 286
+ VD EE + G P + ++GLC ++D+ + + +L G + +E
Sbjct: 260 EEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNIL 319
Query: 287 ------------AQKLVKCYCELG 298
A++L++C ELG
Sbjct: 320 LDGVCRSSTAWAAKRLLECSAELG 343
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 15/233 (6%)
Query: 127 AMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+H+ M A +PD+A F ++ A + AL++ + M +++ P++
Sbjct: 85 ALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAM-AADGVAPDAAACTVL 143
Query: 186 ISGFSS-LGNVDA---MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ ++ L DA + +W AN G + +V TY +LI G A + M+
Sbjct: 144 VGVYACRLRRFDAAYEVVRWMVAN---GVAPDVVTYSTLISGLCSAGQVAEALGVLDLML 200
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P+ ++ C ++ K L ++ G+ + LV+ C++G +
Sbjct: 201 EEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFE 260
Query: 302 ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E++ LE T +P+V+ + + G+ + + R+D V +M GL
Sbjct: 261 EVDALLEESTAKGWTPDVITYSSYMDGLCK----AGRIDKSFALVDKMLSNGL 309
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+FT M +GI P+S FN ++ + G + AL L S+E+ TY+ I
Sbjct: 370 LFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLR----SKEFVATVITYNTLIRHL 425
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G + + I G + N TY +I + F + + + PS
Sbjct: 426 SISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSA 485
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ ++ GL L ++ + + +LG G+ I + Q+L+K C+ G +E
Sbjct: 486 FL--SIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVE 538
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 129/288 (44%), Gaps = 8/288 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNV 124
+ S +++A++ +L +S A+ + L + N + Y L+ AL G+
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLSDGVAPN---VYTYNILVRALCGRGHRK 207
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + M G P+ +N+L+ A +G+V A L +M KPN T+++
Sbjct: 208 E-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGG-LKPNLVTFNS 265
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++G G ++ K + + G + + +Y +L+ G KA + EM G
Sbjct: 266 MVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG 325
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I+P + ++ +C L+R + ++ + G ++NE L+ +C+ G +D+
Sbjct: 326 IMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 385
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +C P V+ ++ +I Y + R+D+ + M +GL
Sbjct: 386 LAVRGMKQCRIKPSVVC--YNALINGYCMVGRMDEARELLHEMEAKGL 431
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 34/228 (14%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----------------- 169
A+ VF M +GI PD F SLI +G++ A++L M
Sbjct: 314 ALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALID 373
Query: 170 -----------------VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ KP+ Y+A I+G+ +G +D + A G
Sbjct: 374 GFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V TY ++I K D S ++M+ G++P ++ LC ++L
Sbjct: 434 DVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLF 493
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
K ++ G + +E L+ +C+ G V+ + + K P+V+
Sbjct: 494 KNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVV 541
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 16/214 (7%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y+ +I+ K + A + M +G+ PD+ ++SLI +
Sbjct: 429 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSD 488
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ M+ +P+ TY + I G GNV++ + + AG +V TY LI
Sbjct: 489 AHVLFKNMIKLG-LQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLI 547
Query: 222 HG-SLKARDFDS--------------VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+G S AR ++ + Y+ +M + + +L+G C + ++
Sbjct: 548 NGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMN 607
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ +L W ++ ++ L+ +C G V
Sbjct: 608 EADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNV 641
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ +D+ I ++SL N ++ A + G+ +V Y +++ +L S RF++
Sbjct: 121 RPFDSLIKSYASLPNRASLAAAALAFARSAGYVPSVLAYNAVLL-ALSDASLTSARRFFD 179
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+S G+ P++ ++ LC R S L+ + G G N LV + G
Sbjct: 180 SMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAG 239
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
VD E + + + P ++ F+ ++ + +++D M ++GL+
Sbjct: 240 EVDGAERLVGMMREGGLKPNLVT--FNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGV- 296
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+Y+ LV GY +AG S + SV EM
Sbjct: 297 ----------------------------------SYNTLVGGYCKAGCSHEALSVFAEM 321
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 16/217 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A+ + M G+ PD ++ LI S + A L +
Sbjct: 508 YTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 567
Query: 171 SSEEYKPNSKTYDAF---------------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ N+K YDA + GF G ++ +K Y + + ++++
Sbjct: 568 HEDPIPANTK-YDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGS 626
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y LIHG +A + F+++M+ G P+ ++ GL + ++ L
Sbjct: 627 VYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 686
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
L + ++ L+ G VD + + L + K
Sbjct: 687 LNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAK 723
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 142/320 (44%), Gaps = 10/320 (3%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
S PK+A L+ R D G E + Y+ L+ K A +F SM +G++P
Sbjct: 284 SGQPKEAIGTLKKMRSD----GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 339
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D A + +L+ G +V +L ++MV + +P+ ++ I ++ VD
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNG-IQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
++ G + NV Y ++I K+ D ++E+M+ G+ P+I + ++ GLC
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT 458
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
K D+ + + +L G +N ++ +C+ GRV E E+ + + + P+++
Sbjct: 459 CDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 518
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFL 380
++ +I L+ ++D+ + M G+ +I Y R + D L LF
Sbjct: 519 --YNTLIDGCCLAGKMDEATKLLASMVSVGVK-PDIVTYGTLINGYCRVSRMDDALALFK 575
Query: 381 DHIKGSYKLRRATYDFLVAG 400
+ + TY+ ++ G
Sbjct: 576 EMVSSGVSPNIITYNIILQG 595
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 5/263 (1%)
Query: 49 QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
Q V Q + N + + +I L +S S A L E +D+ L N
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN--- 445
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y LI A + M +GI ++ FNS+I + G V+ + LF+
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MV KP+ TY+ I G G +D K A+ ++ G ++ TY +LI+G +
Sbjct: 506 LMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D ++EM+S G+ P+I +L+GL R+ K + G ++ +
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624
Query: 288 QKLVKCYCELGRVDELEEQLETL 310
++ C+ DE + L
Sbjct: 625 NIILHGLCKNNLTDEALRMFQNL 647
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KPD +N+LI C +G + A L MVS KP+ TY I+G+
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG-VKPDIVTYGTLINGY 561
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +D + +++G S N+ TY ++ G R + Y + G +
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 621
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L GLC D + L ++ ++ + GR+DE ++
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681
Query: 310 LTKCNQSPEV 319
+ P+V
Sbjct: 682 HSANGLVPDV 691
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 3/246 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V +M G+ PD +NS++ SG A+ + M
Sbjct: 239 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM- 297
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY + ++ G K + + G ++ TY +L+ G
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P + ++ + K+D+ + G N +
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G VD+ E + +P +++ ++ +I D+ D E + M +
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIV--YTSLIHGLCTCDKWDKAEELILEMLDR 475
Query: 351 GLSFKS 356
G+ +
Sbjct: 476 GICLNT 481
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 5/257 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G PD +N+L+ AL L +M P+ +Y+ ++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + LK + G + N L+ C+ GR E +
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIF 329
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++TK P++ + +++ YA L ++ + M + G+ ++IC+Y
Sbjct: 330 DSMTKRGLEPDIAT--YRTLLQGYATKGALVEMHALLDLMVRNGIQ-PDHHVFNILICAY 386
Query: 368 FRCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 387 AKQEKVDQAMLVFSKMR 403
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 13/307 (4%)
Query: 56 KTTLDSVDIFAFNSSQ-------FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
K T D++DI ++ FS++ L+ L + ++A +L D G+
Sbjct: 141 KRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPD 200
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLF 166
+ Y ++ K + A + M +GI PD ++S+I A LC + A+ +
Sbjct: 201 VVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA-LCKAQAMDKAMEVL 259
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
MV + P+ TY++ + G+ S G + G NV TY SL++ K
Sbjct: 260 NTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ ++ M G+ P I +L+G + L + + L ++ G + + ++
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ Y + +VD+ + + +P V+ + +I + S +DD +
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC--YGTVIDVLCKSGSVDDAMLYFEQ 436
Query: 347 MGKQGLS 353
M +GL+
Sbjct: 437 MIDEGLT 443
>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
Length = 637
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Query: 107 CLDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
C DE+ C I + G + A + G+ ++A +N+LI +G++ AL+
Sbjct: 350 CPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALA 409
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
M + +PN +Y + I G S LG + Y +A G NV TY +LIHG
Sbjct: 410 TCTRM-TEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 468
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
K D+ RF++EM+ GI P+ + +++GLC + +RV+ ++F++
Sbjct: 469 AKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLC---RENRVQDAVRFVM 517
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Query: 112 ACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC L G K + A +F M +G+ P +N+LI AC G V A +++ M
Sbjct: 145 ACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQM 204
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V+ + PN TY + I G + + + A AG N TY L+ G + D
Sbjct: 205 VA-RQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDD 263
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+S Y+E+++ G+IP+ + +++G C ++ K +
Sbjct: 264 VNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFR 307
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
S +++ LI + + + KAQ + + + + + N C++ G + + A
Sbjct: 177 SVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGD---AE 233
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F +M+ G++P+ +N L+ DV +A L++ +++S PN+ + I G
Sbjct: 234 RLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSG-LIPNAVVFTTLIDG 292
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F + G + V Y SL+ G+ ++ D Y+EM LG+ P
Sbjct: 293 FCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPD 352
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
V+ GLC ++ FL+ + G +N L+ YC G ++E
Sbjct: 353 EFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCT 412
Query: 309 TLTKCNQSPEVL 320
+T+ P V+
Sbjct: 413 RMTEVGVEPNVV 424
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 73/210 (34%), Gaps = 34/210 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----------------- 169
A +F M G+ P V+NSL+ SGD ALSL++ M
Sbjct: 302 AKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVR 361
Query: 170 -----------------VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
V + N+ Y+A I + GN++ G
Sbjct: 362 GLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEP 421
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV +Y SLI G K Y EM++ GI P++ ++ G +D F
Sbjct: 422 NVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFH 481
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDE 302
K ++ G N LV C RV +
Sbjct: 482 KEMIENGISPNAITVSVLVDGLCRENRVQD 511
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N+ A+ T M G++P+ ++SLI G + A++++ MV
Sbjct: 391 YNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMV 450
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + +PN TY A I G + G +DA +++ I G S N T L+ G +
Sbjct: 451 A-KGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRV 509
Query: 231 DSVDRFYEE 239
RF E
Sbjct: 510 QDAVRFVME 518
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 58/146 (39%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY+ I+ G V + + +A NV TY S+I + +R
Sbjct: 176 PSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERL 235
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++ M G+ P+ ++ G C ++ + LL G N + L+ +C+
Sbjct: 236 FDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCK 295
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
R E ++ + + +P V ++
Sbjct: 296 AKRFSEAKDMFRDMPRFGVAPTVPVY 321
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 120/273 (43%), Gaps = 5/273 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ S +++A++ +L +S A+ L L + N + + G+++
Sbjct: 113 GYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE-- 170
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ V M G P++ +N+L+ A +G++ A + +M KPN T+++
Sbjct: 171 -AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSM 229
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
++G G ++ K + + G + +V +Y +L+ G K + EM G+
Sbjct: 230 VNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGL 289
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P + ++ C L++ + + + G ++NE L+ +C+ G +D+
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+E + KC P V+ ++ +I Y R+D
Sbjct: 350 AVEEMRKCGIQPSVVC--YNALINGYCKLGRMD 380
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 141/344 (40%), Gaps = 51/344 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y L++ KV + ++ VF+ M +G+ PD F SLI A +G++ A++L
Sbjct: 261 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 320
Query: 167 -------------------------EIMVSSEEYK-----PNSKTYDAFISGFSSLGNVD 196
+ +++ EE + P+ Y+A I+G+ LG +D
Sbjct: 321 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 380
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A +V TY ++I G K + DS + ++M+ G++P ++
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++L+ + +L G + +E L+ +C+ G V++ + + +
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500
Query: 317 PEVLLH--FFSG-------------IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
P+V+ + +G + +LY D+++Y + FKS +
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
C D+ ++ + ++KL + Y L+ G+ R G
Sbjct: 561 KGFCMKGLMKEADK--VYQSMLDRNWKLDGSVYSILIHGHCRGG 602
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 3/213 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +G+ PD +N+L+ G + +L++F M + P+ T+ + I
Sbjct: 242 ARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDVVTFTSLI 300
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GN++ A G +N T+ +LI G K D EEM GI
Sbjct: 301 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQ 360
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ ++ G C ++D + ++ + K + ++ YC++G +D +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + K P+ + +S +IR RL+D
Sbjct: 421 NQKMLKKGVLPDAIT--YSSLIRGLCEEKRLND 451
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I+ KV N+ A + M +G+ PD+ ++SLI + A LFE M+
Sbjct: 401 YSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENML 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P+ TY I G GNV+ + I G +V TY LI+G K+
Sbjct: 461 QLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 519
Query: 231 DSVDRF---------------YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
R Y+ +M + +L+G C + + + +
Sbjct: 520 KEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSM 579
Query: 276 LGGGWKINENMAQKLVKCYCELGRV 300
L WK++ ++ L+ +C G V
Sbjct: 580 LDRNWKLDGSVYSILIHGHCRGGNV 604
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 4/173 (2%)
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+DA I ++SL A +AG++ +V Y +++ +L S RF M+
Sbjct: 86 FDALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLL-ALSDASLPSARRFLSSML 144
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G+ P++ ++ LCAR +L+ + + G G N LV +C G +D
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204
Query: 302 ELEEQLETL-TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
E + + + N P ++ F+ ++ + R++ M ++GL+
Sbjct: 205 GAERVVSLMREEGNAKPNLVT--FNSMVNGLCKAGRMEGARKVFDEMVREGLA 255
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A+ + M +G+ PD ++ LI S A L +
Sbjct: 471 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL-FKL 529
Query: 171 SSEEYKPNSKTYDAF---------------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
E+ P++ YDA + GF G + +K Y + + + ++
Sbjct: 530 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 589
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
Y LIHG + + F+++M+ G P+
Sbjct: 590 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 1/218 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + L Y LI +V NV A ++F M++ G PD+ +NSLI A SG +
Sbjct: 785 GVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINEL 844
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L++ M++ KPN+ TY+ IS +D Y ++ FS T+ LI
Sbjct: 845 FDLYDEMLT-RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLID 903
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G LK+ D ++ M+ G P+ I ++ G +D F K ++ G +
Sbjct: 904 GLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRP 963
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ LV C GRVD+ E L + P+++
Sbjct: 964 DLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 42/250 (16%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
Q + L+ + F + +S++ LI L S K L + R+ + +G + L ++
Sbjct: 177 QAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRM--VSEGLKPSLKTFSA 234
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL------------------- 154
L+ SGK +N+ M + ME+ G++P+ ++ IC +
Sbjct: 235 LMVASGKRRNIKTVMGLLEEMESMGLRPN--IYTYTICIRVLGRDGKIDEAYRIMKRMDD 292
Query: 155 --CSGDVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
C DVVT A+ LF M SS +KP+ TY + FS G++D
Sbjct: 293 DGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSS-HKPDKVTYVTLLDKFSDCGHLD 351
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ K + A G++ +V T+ L++ KA + + M G++P++ ++
Sbjct: 352 KVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLI 411
Query: 257 EGLCARRKLD 266
GL +LD
Sbjct: 412 SGLLRANRLD 421
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 5/277 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ LI+ L ++ L L ++ + G E Y LI GK + A+ F
Sbjct: 406 TYNTLISGLLRANRLDDALDLFSNMESL--GVEPTAYTYILLIDYHGKSGHPGKALETFE 463
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+A+GI P+ N+ + + G + A ++F + SS P+S TY+ + +S +
Sbjct: 464 KMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG-LAPDSVTYNMMMKCYSKV 522
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G VD K + +V SLI KA + + + M + + P++
Sbjct: 523 GQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTY 582
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L GL ++ + + + G G N L+ C C+ VD + +T
Sbjct: 583 NILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTT 642
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
N P+VL F+ II + +++ + + +M K
Sbjct: 643 MNCRPDVLT--FNTIIHGFIKQNQIKNAIWLFHQMKK 677
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 7/264 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHV 130
F++++LI + S K +L + D+ML +G + Y +I+ K + AM +
Sbjct: 826 FTYNSLIDA-HGKSGKINELFDLY--DEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ ++ + P F LI L SG + A +F+ MV +PNS Y+ ++G+
Sbjct: 883 YYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYG-CRPNSAIYNILVNGYG 941
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
LG+VD +++ + G ++++Y L+ A D ++E++ G+ P +
Sbjct: 942 KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GL ++ + S + G + L+ +G ++E + E L
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL 1061
Query: 311 TKCNQSPEVLLHFFSGIIRLYALS 334
P V ++ +IR Y LS
Sbjct: 1062 QFIGLKPNVFT--YNALIRGYTLS 1083
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 8/303 (2%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
+ G ++ P A+ M G ++ +N LI L SG AL ++ MVS E K
Sbjct: 171 IRGGLRQAPSALE---KMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVS-EGLK 226
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ KT+ A + N+ + + G N+ TY I + D R
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRI 286
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M G P + +++ LC RKLD + K ++ L+ + +
Sbjct: 287 MKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSD 346
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G +D++E+ + +P+V+ F+ ++ + R+++ + M KQG+ +
Sbjct: 347 CGHLDKVEKIWTEMEADGYAPDVVT--FTILVNALCKAGRINEAFDLLDTMRKQGV-LPN 403
Query: 357 AEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
+I R D LDLF + + TY L+ + ++G GK
Sbjct: 404 LHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFE 463
Query: 416 EMK 418
+MK
Sbjct: 464 KMK 466
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++ ++G+V + A+H F ++ G+ PD +N +I S ALSLF M +
Sbjct: 974 ILCIAGRVDD---ALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM-QNR 1029
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ TY++ I +G ++ K Y G NV TY +LI G + + +
Sbjct: 1030 GIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELA 1089
Query: 234 DRFYEEMMSLGIIPS 248
Y++MM G P+
Sbjct: 1090 YGIYKKMMVGGCDPN 1104
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I G+ Q A+ +F M+ +GI PD +NSLI G + A ++E +
Sbjct: 1003 YNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYE-EL 1061
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
KPN TY+A I G++ GN + Y + G N T+ L + S
Sbjct: 1062 QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPNQS 1115
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 1/180 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ GK+ +V A F M +GI+PD + L+ +G V AL FE +
Sbjct: 933 YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFE-KL 991
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ Y+ I+G + + G ++ TY SLI
Sbjct: 992 KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMI 1051
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + YEE+ +G+ P++ ++ G + K ++ GG N +L
Sbjct: 1052 EEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 36/202 (17%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A + +M QG+ P+ +N+LI L + + AL LF M S +P +
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNM-ESLGVEPTA 439
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I ++ + G ++ +E+
Sbjct: 440 YTYILLID-------------YHGKSGHPGKALET----------------------FEK 464
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + GI P+I L L +L K+ L G + ++KCY ++G+
Sbjct: 465 MKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524
Query: 300 VDELEEQLETLTKCNQSPEVLL 321
VDE + L ++K P+V++
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIV 546
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIM 169
Y +I+ K+ NV A +F M + I PD + S+I SG +V A +F E++
Sbjct: 350 YTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEML 409
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V E P+ TY A I G+ G + + + G + NV TY +L G K +
Sbjct: 410 VKGLE--PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + EM G+ P++ ++ GLC +++ ++ + G+ +
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ YC++G + + E L + P ++ F+ ++ + +S L+D E + M +
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVT--FNVLMNGFCMSGMLEDGERLIEWMLE 585
Query: 350 QGL 352
+G+
Sbjct: 586 KGI 588
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
++ +G+KPD ++N++I +G+VV A L M + P++ Y ISGF LG
Sbjct: 303 LKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVF-PDNVVYTTVISGFCKLG 361
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
NV A K + ++ TY S+IHG K+ + EM+ G+ P
Sbjct: 362 NVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYT 421
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++G C ++ S ++ G N L C+ G +D E L +++
Sbjct: 422 ALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRK 481
Query: 314 NQSPEV 319
P V
Sbjct: 482 GLQPNV 487
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 1/198 (0%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+ ++KG E Y LI K + A V M +G+ P+ + +L +G
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ A L M S + +PN TY+ ++G +GN++ K AGF + TY
Sbjct: 467 EIDVANELLHEM-SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITY 525
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+L+ K + M++ + P++ ++ G C L+ + ++++L
Sbjct: 526 TTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLE 585
Query: 278 GGWKINENMAQKLVKCYC 295
G N L+K YC
Sbjct: 586 KGIMPNATTFNSLMKQYC 603
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 9/275 (3%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H+ M GI+PD +FN LI G V A+ LF M + P++ TY +
Sbjct: 364 HLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKM-RRQGLNPDTVTYGIVMDA 422
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIP 247
+G VD + I+ G + + + +LIHG L ARD +D + EM+ GI P
Sbjct: 423 LCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHG-LCARDKWDKAEELAVEMIGRGICP 481
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +L LC + R K+ ++ + + L+ YC G+VDE + L
Sbjct: 482 NNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLL 541
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS--FKSAEDVEMVIC 365
E + P + ++ +I Y + R++D +M +G++ + + +
Sbjct: 542 EGMVLDGVKPNEVT--YNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLF 599
Query: 366 SYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
R AA L L++ IK K TY+ ++ G
Sbjct: 600 QARRTAAAKELYLWM--IKSGIKFDIGTYNIILLG 632
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK + A+ VF M G++PD +N+L+ +G + A +F+ MV +KP
Sbjct: 286 SGKPND---AIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVK-RGHKP 341
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
NS TY + G+++ G++ M+ + G + + LI K D +
Sbjct: 342 NSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLF 401
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M G+ P V++ LC K+D + L+ G + + + L+ C
Sbjct: 402 SKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCAR 461
Query: 298 GRVDELEE 305
+ D+ EE
Sbjct: 462 DKWDKAEE 469
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 4/226 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA--CLIALSGKVQNVPFAMHVFTSMEA 136
T L + + + + + LD M++ N D Y LI K V AM +F+ M
Sbjct: 348 TLLHGYATEGSLVKMHHLLDMMVR-NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRR 406
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
QG+ PD+ + ++ A G V A++ F ++ SE P++ + I G + D
Sbjct: 407 QGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLI-SEGLTPDAVVFRNLIHGLCARDKWD 465
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ I G N + +L++ K ++ M+ + + + ++
Sbjct: 466 KAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLI 525
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+G C K+D L+ ++ G K NE ++ YC+ GR+++
Sbjct: 526 DGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIED 571
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A H+F M QG+ PD +NS+I A L + ++ + + PN T+++ +
Sbjct: 222 AYHLFDQMLDQGLSPDVVTYNSIISA-LSKARAMDKAAVVLVRMVKNGAMPNRITHNSLL 280
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ S G + + G +V TY +L+ K + ++ M+ G
Sbjct: 281 HGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHK 340
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +L G L ++ L ++ G + + + L+ Y + G+VD+
Sbjct: 341 PNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLL 400
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +P+ + + ++ + ++DD GR+ +GL+
Sbjct: 401 FSKMRRQGLNPDTVT--YGIVMDALCMVGKVDDAMAQFGRLISEGLT 445
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 9/233 (3%)
Query: 127 AMHVFTSMEAQ-----GIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSK 180
A+H+ +M G PD +N++I L G + TA LF+ M+ + P+
Sbjct: 181 ALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLD-QGLSPDVV 239
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY++ IS S +D + G N T+ SL+HG + + ++ M
Sbjct: 240 TYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G+ P + ++ LC + + ++ G K N L+ Y G +
Sbjct: 300 CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSL 359
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
++ L+ + + P+ + F+ +I Y ++DD +M +QGL+
Sbjct: 360 VKMHHLLDMMVRNGIQPD--HYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLN 410
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 11/199 (5%)
Query: 162 ALSLFE--IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A+SLF +MV+ + PN TY I S +G++D I +G++ T+
Sbjct: 72 AISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP 131
Query: 220 LIHGSL-KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL-- 276
L+ K R +++D M LG P++ +L+GLC + + L ++
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191
Query: 277 ---GGGWKINENMAQKLVKCYCELGR-VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
GG+ + ++ GR +D + + SP+V+ ++ II +
Sbjct: 192 DDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVT--YNSIISALS 249
Query: 333 LSDRLDDVEYSVGRMGKQG 351
+ +D + RM K G
Sbjct: 250 KARAMDKAAVVLVRMVKNG 268
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 85/237 (35%), Gaps = 39/237 (16%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L GKV A + M G+KP+ +N++I +G + A SLF M +S+
Sbjct: 530 LHGKVDE---AAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM-ASKGVN 585
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG------------- 223
P TY + G A + Y I +G ++ TY ++ G
Sbjct: 586 PGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRI 645
Query: 224 ---------SLKARDF-------------DSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
L+ R F D + +++ G++P++ +++ L
Sbjct: 646 FQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 705
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ L+ + L G N M LV + G V + L + + N S E
Sbjct: 706 QGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLE 762
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 5/251 (1%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ AL+ L + ++AQ VLE D+ N + Y+ LI K V A VF
Sbjct: 338 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN---VITYSSLIDGLCKTGQVRDAQEVF 394
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +GI+P+ +NSLI + V +AL L E M ++ P+ TY+ I G
Sbjct: 395 KRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG-CLPDIITYNTLIDGLCK 453
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G N+ + A + +V TY LI G K D +++M+ ++P +
Sbjct: 454 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 513
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++EG C +D + L+ ++ + LV +C++GR+ E L+ +
Sbjct: 514 FSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMA 573
Query: 312 KCNQSPEVLLH 322
K P V+ +
Sbjct: 574 KRGCQPNVVTY 584
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 118/312 (37%), Gaps = 75/312 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC----------ACL------ 154
Y L+A K + A+ VF PD +++LI AC
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328
Query: 155 ---CSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVD 196
C DVVT +L + + + + PN TY + I G G V
Sbjct: 329 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 388
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + I G NV TY SLIHG DS EEM + G +P I ++
Sbjct: 389 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 448
Query: 257 EGLC-------ARRKLDRVKSFLKF----------LLGGGWKINE-NMAQ---------- 288
+GLC A R +K+ KF L+GG K+ +MA+
Sbjct: 449 DGLCKTGRAPEANRLFGDMKA--KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506
Query: 289 ---------KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
LV+ YC G VD+ E LE + + SP+V + ++ ++ + R+ +
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV--YTYTSLVDGFCKVGRMVE 564
Query: 340 VEYSVGRMGKQG 351
+ RM K+G
Sbjct: 565 ARRVLKRMAKRG 576
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 5/272 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
+ + + L++++ + ++ +LI L ++ + AQ V + + ++G E +
Sbjct: 352 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI---VRGIEPNVVT 408
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A+ + M A G PD +N+LI +G A LF M
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM- 467
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ P+ TY I GF L +D + + +V T+ +L+ G A
Sbjct: 468 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 527
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +R EEM++ P + +++G C ++ + LK + G + N L
Sbjct: 528 DDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTAL 587
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C G+ LE + P V+ +
Sbjct: 588 IDAFCRAGKPTVAYRLLEEMVGNGVQPNVITY 619
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 6/220 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +N A+ F SME + + + +++ LC + + + + + + PN
Sbjct: 106 KARNTAKALDYFRSMECE----KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNE 161
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I+GF + V +G + NV TY ++IHG + D+ + + +
Sbjct: 162 WTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 221
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G +P++ +L GLC +D L + G + ++ L+ C+ G+
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+D + E + + P+V+ +S +I + RLD+
Sbjct: 282 IDMALKVFEDNSNGDCPPDVVA--YSTLIAGLCKAGRLDE 319
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 13/307 (4%)
Query: 117 LSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG +N + A + M +G++PD +++L+ +G + AL +FE S+ +
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN-SNGD 296
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P+ Y I+G G +D K + +V T+ +L+ G K
Sbjct: 297 CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 356
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M P++ +++GLC ++ + K ++ G + N L+ +
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C VD +E +T P+++ ++ +I + R + G M + +
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIIT--YNTLIDGLCKTGRAPEANRLFGDMKAKFCN- 473
Query: 355 KSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
DV C +R+D LF D +K + T+ LV GY AGL
Sbjct: 474 ---PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 530
Query: 411 DSVINEM 417
+ ++ EM
Sbjct: 531 ERLLEEM 537
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K P A +F M+A+ PD ++ LI + A +LF+ M+
Sbjct: 444 YNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 503
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ T+ + G+ + G VD + +A+ S +V TY SL+ G K
Sbjct: 504 K-QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 562
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R + M G P++ +++ C K L+ ++G G + N + L
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ +C G ++E + LE L +
Sbjct: 623 IGGFCGTGDLEEARKILERLER 644
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 4/208 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA +I K ++ A + M G PD+A++N +I A + + AL F M
Sbjct: 62 YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM- 120
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + N T+ I G + ++A G N TY LI+G K
Sbjct: 121 ---ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM G+ P++ V+ G C + K+D + ++ G N L
Sbjct: 178 HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTL 237
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPE 318
+ C G +DE E L+ + + P+
Sbjct: 238 LSGLCRNGLMDEAYELLDEMRERGLQPD 265
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 3/202 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKML--KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL K ++V R+ K + +G + + Y LI + A + M
Sbjct: 550 TSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G++P+ + SLI +GD+ A + E + E K + Y + G G +
Sbjct: 610 NGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMS 669
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM-MSLGIIPSIPILEKV 255
A + A +G Y +LI G + ++ EEM +S P+ E V
Sbjct: 670 AALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAV 729
Query: 256 LEGLCARRKLDRVKSFLKFLLG 277
++ L + + + LLG
Sbjct: 730 IQELAREGRHEEANALADELLG 751
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 32/253 (12%)
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A+ ++ A+ GF NV TY L L+AR D + GI P++ V+
Sbjct: 7 ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG---------RVDELEEQL 307
+GLC LD+ L+ + G + + ++ C+ R E E+ +
Sbjct: 67 QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV 126
Query: 308 ETLT-------KCNQSPEVLLHF--------------FSGIIRLYALSDRLDDVEYSVGR 346
T T K N+ PE +F ++ +I + ++ +
Sbjct: 127 ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 186
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
M + GL+ + VI + R D LF ++ TY+ L++G R G
Sbjct: 187 MKESGLA-PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 245
Query: 406 LSGKLDSVINEMK 418
L + +++EM+
Sbjct: 246 LMDEAYELLDEMR 258
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 124/309 (40%), Gaps = 5/309 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ A+ M G KPD +N+LI G V A L E +
Sbjct: 312 YNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQAL 371
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN +Y I + G D + W G ++ TY +L+HG + A +
Sbjct: 372 G-KGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEV 430
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D E+M+ G+ P I ++ GLC + KL K L +L + + L
Sbjct: 431 DVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATL 490
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V + G +DE + E + +P ++ ++ +I+ Y + D + RM K+
Sbjct: 491 VDGFIRNGNLDEARKLFELTIEKGMNPGIV--GYNAMIKGYCKFGMMKDAMACINRMKKR 548
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
L+ VI Y + D +F + +K K TY L+ G+ R G +
Sbjct: 549 HLA-PDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHR 607
Query: 410 LDSVINEMK 418
+ EM+
Sbjct: 608 SLKIFREMQ 616
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Query: 98 DKMLK---GNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
D+ML+ + C+D Y+ I + G K + + QG P+ +N+LI
Sbjct: 189 DEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDG 248
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
GD+ A LF I + + + P +TY A I+GF G+ A+++ + G +V
Sbjct: 249 YCKKGDMEMANGLF-IELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTV 307
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NVQ Y ++I K E M+ G P I ++ G C K+ L
Sbjct: 308 NVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLL 367
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ LG G N+ L+ YC+ G D L +T+ P+++ +
Sbjct: 368 EQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTY 417
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 52/320 (16%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
W ++ +G++ L Y L+ V A+ + M +G+ PD+ ++N L+ L
Sbjct: 401 WLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG-L 459
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
C + A L + + P++ Y + GF GN+D K + I G + +
Sbjct: 460 CKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGI 519
Query: 215 Q-----------------------------------TYESLIHGSLKARDFDSVDRFYEE 239
TY ++I G +K D D + + E
Sbjct: 520 VGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFRE 579
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ + P++ ++ G C + L R + + G N L+ +C+ +
Sbjct: 580 MVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAK 639
Query: 300 VDE----LEEQLETLTKCNQSPEVLLHFFSGIIR--LYALSDRLDDVEYS--------VG 345
+ + EE L + KC + + +G + A+S++ ++ + + G
Sbjct: 640 LIDAASFFEEML--MNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFG 697
Query: 346 RMGKQGLSFKSAEDVEMVIC 365
RM G + +SA ++IC
Sbjct: 698 RMISDGWAPRSAAYNSILIC 717
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ +F M+A G+ P+ ++ LI + ++ A S FE M+ ++ PN T++ +
Sbjct: 608 SLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNK-CVPNDVTFNYLV 666
Query: 187 SGFS--------SLGNVDAMNK------WYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+GFS GN NK ++ I+ G++ Y S++ + F +
Sbjct: 667 NGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRT 726
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ +M S G IP +L G+C
Sbjct: 727 ALQLSNKMTSKGCIPDSVSFVALLHGVC 754
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 14/337 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI SL S K L L +++ G + + Y LI A +
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+ P+ +N+LI G + A+ + E+M S + PN++TY+ I G+
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNELIKGYCKS 441
Query: 193 GNVDAM---NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
AM NK + +V TY SLI G ++ +FDS R M G++P
Sbjct: 442 NVHKAMGVLNKMLERKVLP----DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++ LC ++++ L G N M L+ YC+ G+VDE LE
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ N P L F+ +I +L + +M K GL + D ++I +
Sbjct: 558 MLSKNCLPNSLT--FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT-ILIHRLLK 614
Query: 370 CAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+D F + K TY + Y R G
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREG 651
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
D+VD+ S+ +++ LI S+ KA VL L++ + + + Y
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD---VVTYNS 467
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI + N A + + M +G+ PD + S+I + S V A LF+ + +
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL-EQK 526
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN Y A I G+ G VD + ++ N T+ +LIHG
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E+M+ +G+ P++ ++ L D S + +L G K + + ++
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
YC GR+ + E+ + + + SP+ L +S +I+ Y
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPD--LFTYSSLIKGYG 683
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 3/231 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM V M + + PD +NSLI SG+ +A L +M + P+ TY
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM-NDRGLVPDQWTY 500
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I V+ + + G + NV Y +LI G KA D E+M+S
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+P+ ++ GLCA KL + ++ G + + L+ + G D
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDH 620
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + + P+ H ++ I+ Y RL D E + +M + G+S
Sbjct: 621 AYSRFQQMLSSGTKPDA--HTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+ ++G+ LGNV+ N++ + + AG + TY SLI G + +D DS +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ EM G + ++ GLC R++D
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 5/217 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ NV A + + G+ PD + SLI D+ +A +F M + + N
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-PLKGCRRNE 288
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I G +D AM+ + F V+TY LI + +
Sbjct: 289 VAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT-VRTYTVLIKSLCGSERKSEALNLVK 347
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM GI P+I +++ LC++ K ++ + L +L G N L+ YC+ G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+++ + +E + SP ++ +I+ Y S+
Sbjct: 408 MIEDAVDVVELMESRKLSPNT--RTYNELIKGYCKSN 442
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 107/270 (39%), Gaps = 24/270 (8%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
+ +++ALI L + K +LE ++ K+ G + + LI K + A
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKI--GLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F M + G KPD+ + + I G ++ A + M P+ TY + I G+
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM-RENGVSPDLFTYSSLIKGY 682
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR------------------DFD 231
LG + G + T+ SLI L+ + +FD
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFD 742
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV--KSFLKFLLGGGWKINENMAQK 289
+V E+M+ + P+ EK++ G+C L RV K F G +E +
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL-RVAEKVFDHMQRNEGISPSELVFNA 801
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ C C+L + +E + ++ + P++
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 4/276 (1%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W K+ K G L Y+ +I+ K +V A + M G KP+ SLI
Sbjct: 300 WFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGL 359
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF ++ S+ YKPN TY A ISG+ + + G N
Sbjct: 360 CKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPN 419
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY +LI G KA +F E M + G P+ +++GLC R + + L
Sbjct: 420 TNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN 479
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ + L+ C+ +++ L + K P++ H ++ +I +
Sbjct: 480 TGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDI--HLYTTLIAAFCR 537
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ + D E + K GL+ + E +IC Y R
Sbjct: 538 QNMMKDSEKLFDEVIKLGLA-PTKETYTSMICGYCR 572
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 4/241 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ + ++ + A+ + M QG+ + V N +I V A ++F+ M +
Sbjct: 179 CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 238
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
Y P+S TY I G+ GNV ++W + GF V+ T +I + +
Sbjct: 239 GVY-PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNR 297
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
F+ ++ +G+ P++ ++ GLC R + + L+ ++ GWK N L+
Sbjct: 298 AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIH 357
Query: 293 CYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G + L + N P V H ++ +I Y ++L E RM +QG
Sbjct: 358 GLCKKGWTERAFRLFLKLIRSDNYKPNV--HTYTAMISGYCKEEKLSRAEMLFERMKEQG 415
Query: 352 L 352
L
Sbjct: 416 L 416
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 2/184 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F + G+ P+ ++S+I G V A L E MV + +KPN T+ + I
Sbjct: 298 AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG-WKPNVYTHTSLI 356
Query: 187 SGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + + + I + + NV TY ++I G K + +E M G+
Sbjct: 357 HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 416
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P+ +++G C + ++ + G+ N +V C+ GR +E +
Sbjct: 417 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFK 476
Query: 306 QLET 309
L T
Sbjct: 477 LLNT 480
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 35/233 (15%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN-------------------------- 147
+I ++ +++ V +A +VF M A+G+ PDS +
Sbjct: 215 IILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERG 274
Query: 148 --------SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+LI C +V F V+ PN Y + ISG G+V
Sbjct: 275 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 334
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKVLEG 258
+ + G+ NV T+ SLIHG K + R + +++ S P++ ++ G
Sbjct: 335 ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 394
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
C KL R + + + G N N L+ +C+ G + E +E ++
Sbjct: 395 YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMS 447
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 36/242 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ K + + A +F M+ QG+ P++ + +LI +G+ A L E+M
Sbjct: 388 YTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM- 446
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAA------------------ 208
S+E + PN+ TY++ + G G + +N + I A
Sbjct: 447 SNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADM 506
Query: 209 -------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
GF ++ Y +LI + ++ ++E++ LG+ P+ +
Sbjct: 507 NQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSM 566
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G C +K+ F + + G + L+ C+ R+DE + +T+
Sbjct: 567 ICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL 626
Query: 316 SP 317
SP
Sbjct: 627 SP 628
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 37/243 (15%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+++ E ++ L N + Y LI K N A + M +G P++ +N
Sbjct: 403 RAEMLFERMKEQGLVPNT---NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 459
Query: 148 SLICACLCSGDVVTALSL---------------FEIMVSSE------------------- 173
S++ G A L + I++S +
Sbjct: 460 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 519
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
++P+ Y I+ F + K + I G + +TY S+I G + +
Sbjct: 520 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 579
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+F+++M G P ++ GLC +LD + ++ G E L
Sbjct: 580 VKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYE 639
Query: 294 YCE 296
YC+
Sbjct: 640 YCK 642
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+K + +L W + L + + Y LI K N+ A+ +F M +G+ PD +
Sbjct: 166 EKGKGLLTWMFENGLNPD---ILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCY 222
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N LI L GD V A +++ +++ P+ +TY+ I+G LG +D + +
Sbjct: 223 NILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMK 282
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
S ++ T+ S+IHG KA +F++ ++ ++EM+ G+ P + +L GL KL+
Sbjct: 283 KNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLN 342
Query: 267 R 267
+
Sbjct: 343 K 343
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 6/254 (2%)
Query: 101 LKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+K NE D ++ +I K N A VF M G+ PD +N+++ +G
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK 340
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ L+ +M S+ N +Y+ I G V+ ++ G + TY
Sbjct: 341 LNKCFELWNVM--SKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYG 398
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
LI+G K + R EE + G ++ GLC + L++ + +
Sbjct: 399 LLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
K+N ++ L+ Y +++E L + + +P V+ ++ II ++R
Sbjct: 459 RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVV--SYNTIINGLCKAERFS 516
Query: 339 DVEYSVGRMGKQGL 352
D S+ M ++GL
Sbjct: 517 DAYLSLKEMLEEGL 530
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 106/252 (42%), Gaps = 7/252 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
S++ LI L + K Q + W+L ++ LK + + Y LI K + A+ +
Sbjct: 361 SYNMLIQGLLDNK-KVEQAICYWQLLHERGLKADST---TYGLLINGLCKNGYLNKALRI 416
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
E +G D+ ++S++ G + A+ L M + K NS +++ I+G+
Sbjct: 417 LEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRR-KLNSHVFNSLINGYV 475
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
++ + + V +Y ++I+G KA F +EM+ G+ P +
Sbjct: 476 RAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMI 535
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC K+D + + K + M ++ C +VD E +
Sbjct: 536 TYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQM 595
Query: 311 TKCNQSPEVLLH 322
+ N P+++ H
Sbjct: 596 RQVNCVPDLVTH 607
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSA 144
KK L L +K N L+ + ++G V+ A+ V M+++ P
Sbjct: 441 KKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVV 500
Query: 145 VFNSLICACLCSGDVVTA--LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKW 201
+N++I LC + + LSL E++ E KP+ TY I G VD A+N W
Sbjct: 501 SYNTIING-LCKAERFSDAYLSLKEML--EEGLKPDMITYSLLIDGLCRGEKVDMALNLW 557
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ I ++Q + +IHG A+ D + +M + +P + ++EGL
Sbjct: 558 HQC-INKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGL 614
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 64/257 (24%)
Query: 153 CLCSGDVV--------------TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
C CS DV AL+LF+ MV P +++++ ++ F
Sbjct: 74 CTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIE------S 127
Query: 199 NKWYAANI------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
N+W A + AG S N+QTY LI S K R F+ M G+ P I
Sbjct: 128 NQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSY 187
Query: 253 EKVLEGLCARRKL-DRVKSFLK-------------------FLLGGG-------WK--IN 283
++ L L D V+ F + FL G WK +
Sbjct: 188 GTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLT 247
Query: 284 ENMAQKLVKCY-------CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
E+ V+ Y C+LG++DE E + K +SP+ L FS +I + +
Sbjct: 248 ESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPD--LFTFSSMIHGLSKAGN 305
Query: 337 LDDVEYSVGRMGKQGLS 353
+ E M + GLS
Sbjct: 306 FNAAEKVFQEMIESGLS 322
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+KPD + SL+ LC G+ V AL+L+ ++ + KP+ + ++ I G +
Sbjct: 525 MLEEGLKPDMITY-SLLIDGLCRGEKVDMALNLWHQCIN-KRLKPDLQMHNIIIHGLCTA 582
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
VD + + ++ T+ +++ G KA D + ++ ++ G+ P I
Sbjct: 583 QKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISY 642
Query: 253 EKVLEGLCARRKLDRVKSFL 272
+GLC+ ++ FL
Sbjct: 643 NITFKGLCSCARVSDAIEFL 662
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 3/308 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V M+ +G+K + ++ +I + D A ++FE MV
Sbjct: 485 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 544
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E KP+ Y+ IS F +GN+D + +T+ +IHG K+ D
Sbjct: 545 -KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDM 603
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G +P++ ++ GL +R++++ L + G NE+ K+
Sbjct: 604 RRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 663
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ Y +G + E L N+ +V + + +++ S R+ M +
Sbjct: 664 MQGYASVGDTGKAFEYFTRLQ--NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 721
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
+ S ++ R ++ DL K K TY ++ +AG +
Sbjct: 722 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 781
Query: 411 DSVINEMK 418
I EM+
Sbjct: 782 TQTIEEME 789
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 705 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 760
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 761 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 820
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++GI P + +L L +R + V + K ++ G ++ A
Sbjct: 821 EEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 880
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
KC C++ EL E L+ + S H F
Sbjct: 881 KCLCKIEASGGELTETLQKTFPPDWSSHHHHHGF 914
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+ ALS M
Sbjct: 309 EFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 368
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GFS G+ +A + W+ ++N Y +I+ + +
Sbjct: 369 -KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 427
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + EM GI I I +++G
Sbjct: 428 MERAEALVREMEEEGIDAPIAIYHTMMDG 456
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M GI+ D+ +NSLI G V ++L +V+ ++ +P+ Y+ I
Sbjct: 422 AFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVA-QDPQPSVSLYELLI 480
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ +A + + G N TY++++HGSLK+ DF+ V Y E + G
Sbjct: 481 IKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYG 540
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ K++ LC+R K D K + G K + L++ +C+ G+V
Sbjct: 541 TTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKV 594
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + +N V +M A+ P + +I + + + A +F +
Sbjct: 266 YNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDL- 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y P+ Y I G +G+ K + + G N TY +++HGSLK+ DF
Sbjct: 325 KDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDF 384
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y EM + G + K++ LC+R K D K + G + + L
Sbjct: 385 ERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSL 444
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ +C+ G+VDE L L + P V L+
Sbjct: 445 IRGFCKEGKVDERMNLLNELVAQDPQPSVSLY 476
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 1/177 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV-SSEEYKPNSKTYDAF 185
A+ V+ ++ GI+ NS++ CL +G ++ M+ + N++T
Sbjct: 175 AIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCL 234
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F G V + + G TY LI G +A+++ S+ M++
Sbjct: 235 IQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNH 294
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+P+I ++++ GLC + L G+ + M ++ CE+G E
Sbjct: 295 LPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGE 351
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/179 (18%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 155 CSGDVVTALSLFEIMVSSEEYK------------PNSKTYDAFISGFSSLGNVDAMNKWY 202
C+ D +++ LFE ++ ++ + P+S + + ++ +G ++ + Y
Sbjct: 120 CTPDPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAIEVY 179
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--PSIPILEKVLEGLC 260
AG +++ S++ G LKA + + FY+EM+ G + + +++ C
Sbjct: 180 FQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFC 239
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ R L L G KL+ +C+ + E L T+ N P +
Sbjct: 240 DSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTI 298
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 92/248 (37%), Gaps = 11/248 (4%)
Query: 17 LLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDA 76
+L+ LRF + LC + + SSN L LL ++ DI F S +
Sbjct: 104 VLLSLRFFQWLCTNHDCTPDPISSNMLFEALLDAKA--VRAAKMVRDIAGFIPDSASLEQ 161
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSM 134
+ L + + + ++L K + AC LSG K + M
Sbjct: 162 YVKCLCGVGFIEEAIEVYFQL----KEAGIRISIVACNSILSGCLKAGKTELLFEFYQEM 217
Query: 135 EAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
G D + LI A SG V L + + P + TY+ I+GF
Sbjct: 218 IKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTG-LDPGNPTYNKLIAGFCQA 276
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
N +M++ IA + TY+ +I+G K + R + ++ G P +
Sbjct: 277 KNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMY 336
Query: 253 EKVLEGLC 260
++ GLC
Sbjct: 337 TTMIHGLC 344
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 131/290 (45%), Gaps = 9/290 (3%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIALSGKVQ 122
+ ++ L+ L S KA+++ +L D+M+K G E + Y+ +I K+
Sbjct: 41 LGLQPNHVTFSTLLNGLSS----KAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMG 96
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ + ME +G KP+ V++++I + LC ++T F + + PN TY
Sbjct: 97 STTMAIQLLKKMEEKGCKPNVVVYSTIIDS-LCKDKLITEAMEFLSEMVNRGISPNVVTY 155
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + GF +LG + + + + T+ L+ G K +E M+
Sbjct: 156 SSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIE 215
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P++ +++G C++ ++D + ++ G + L+K +C+ GR+DE
Sbjct: 216 KGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDE 275
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ L ++ +P+ + +S +++ + R D + + M GL
Sbjct: 276 AKGLLAEMSHKALTPDTVT--YSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 123/328 (37%), Gaps = 77/328 (23%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + + PD+ FN L+ G ++ A +FE M+ + +PN TY+A +
Sbjct: 171 ATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIE-KGVEPNVNTYNALM 229
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV------------- 233
G+ S +D K + + G + +V++Y LI G K+ D
Sbjct: 230 DGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALT 289
Query: 234 ----------------------DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ EEM S G++P + VL+GLC + LD
Sbjct: 290 PDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFEL 349
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
LK + + N + L++ C G+++ E L F GI
Sbjct: 350 LKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL------------FVKGI---- 393
Query: 332 ALSDRLDDVEYSVGRMG--KQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL 389
+ D V Y+V G K GLS ++ C FR A + G
Sbjct: 394 ----QPDVVTYTVMISGLLKGGLSNEA--------CELFRDMA----------VHGCLP- 430
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEM 417
TY+ ++ G+ R G + +I EM
Sbjct: 431 NSCTYNVIIQGFLRNGDTSNAGRLIEEM 458
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 3/189 (1%)
Query: 134 MEAQGIKPDSAVFNSLI-CACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M+ I+PD LI C C + D A S+ M +PN T+ ++G SS
Sbjct: 1 MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLG-LQPNHVTFSTLLNGLSS 59
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+ K + + G+ +V TY ++I+G K + ++M G P++ +
Sbjct: 60 KAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVV 119
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++ LC + + FL ++ G N ++ +C LGR +E + +
Sbjct: 120 YSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV 179
Query: 312 KCNQSPEVL 320
+ N P+ +
Sbjct: 180 ERNVMPDTV 188
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+++ +GI+PD + +I L G A LF M + PNS TY+ I
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM-AVHGCLPNSCTYNVII 439
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
GF G+ + + GFS + T++ L L++RD
Sbjct: 440 QGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML--SDLESRD 480
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEM 240
+D F FS LGN+ G N T+ +L++G S KA+ D+V + ++EM
Sbjct: 25 HDHFHFAFSVLGNM----------FKLGLQPNHVTFSTLLNGLSSKAKIIDAV-KLFDEM 73
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ +G P + ++ GLC LK + G K N + ++ C+ +
Sbjct: 74 VKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLI 133
Query: 301 DELEEQLETLTKCNQSPEV-----LLHFFSGIIR 329
E E L + SP V +LH F + R
Sbjct: 134 TEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 9/283 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMH 129
F + L+TS+ L L ++D G D Y I ++ + V FA+
Sbjct: 57 FEFAKLLTSIAKMKHYSTVLSLSKKMDSF--GIPP--DVYTLTIVINSFCHLNRVDFALS 112
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + G +PD+A F +L+ G + AL +F+ MV E ++PN TY ++G
Sbjct: 113 VLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG-EGFQPNVVTYGTLMNGL 171
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ IA G S ++ TY SLIH ++ V EM+ I+P++
Sbjct: 172 CKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNV 231
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
L V++ LC K+ + ++ GG + + L+ +C +DE + +
Sbjct: 232 VSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDM 291
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + V+ ++ +I Y R+D Y M +Q L
Sbjct: 292 MVRNGCVCNVV--SYNTLINGYCKIQRIDKAMYLFEEMCRQEL 332
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 28/271 (10%)
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWR-----LDKMLKG----NESCLDEY 111
S DIF +NS LI +L + + EW+ L++M+K N L+
Sbjct: 193 SPDIFTYNS-------LIHALCN--------LCEWKHVTTLLNEMVKSKIMPNVVSLNIV 237
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+ GKV A V M G++PD + +L+ ++ A+ +F++MV
Sbjct: 238 VDALCKEGKVTE---AHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVR 294
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ N +Y+ I+G+ + +D + N TY +LIHG
Sbjct: 295 NG-CVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQ 353
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ EM++ G IP++ +L+ LC +L + LK + G + + +
Sbjct: 354 DAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAI 413
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
C G ++ + L P+V H
Sbjct: 414 DGMCRAGDLEAARDLFSNLAPRGLQPDVWTH 444
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 35/230 (15%)
Query: 98 DKMLKGNESC-LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D M++ C + Y LI K+Q + AM++F M Q + P++ +++LI
Sbjct: 290 DMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHV 349
Query: 157 GDVVTALSLFEIMVSSEEYK----------------------------------PNSKTY 182
G + A++LF MV+ + P+ + Y
Sbjct: 350 GRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVY 409
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I G G+++A ++ G +V T+ +I G K D + + EM
Sbjct: 410 NIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDE 469
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
G + + + +GL K R L+ +L G+ + + LVK
Sbjct: 470 NGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVK 519
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 5/251 (1%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ AL+ L + ++AQ VLE D+ N + Y+ LI K V A VF
Sbjct: 219 TFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN---VITYSSLIDGLCKTGQVRDAQEVF 275
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +GI+P+ +NSLI + V +AL L E M ++ P+ TY+ I G
Sbjct: 276 KRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL-PDIITYNTLIDGLCK 334
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G N+ + A + +V TY LI G K D +++M+ ++P +
Sbjct: 335 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 394
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++EG C +D + L+ ++ + LV +C++GR+ E L+ +
Sbjct: 395 FSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMA 454
Query: 312 KCNQSPEVLLH 322
K P V+ +
Sbjct: 455 KRGCQPNVVTY 465
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 118/312 (37%), Gaps = 75/312 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC----------ACL------ 154
Y L+A K + A+ VF PD +++LI AC
Sbjct: 150 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMR 209
Query: 155 ---CSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVD 196
C DVVT +L + + + + PN TY + I G G V
Sbjct: 210 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 269
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + I G NV TY SLIHG DS EEM + G +P I ++
Sbjct: 270 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 329
Query: 257 EGLC-------ARRKLDRVKSFLKF----------LLGGGWKINE-NMAQ---------- 288
+GLC A R +K+ KF L+GG K+ +MA+
Sbjct: 330 DGLCKTGRAPEANRLFGDMKA--KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387
Query: 289 ---------KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
LV+ YC G VD+ E LE + + SP+V + ++ ++ + R+ +
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV--YTYTSLVDGFCKVGRMVE 445
Query: 340 VEYSVGRMGKQG 351
+ RM K+G
Sbjct: 446 ARRVLKRMAKRG 457
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 13/307 (4%)
Query: 117 LSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG +N + A + M +G++PD +++L+ +G + AL +FE S+ +
Sbjct: 119 LSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN-SNGD 177
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P+ Y I+G G +D K + +V T+ +L+ G K
Sbjct: 178 CPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 237
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M P++ +++GLC ++ + K ++ G + N L+ +
Sbjct: 238 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C VD +E +T P+++ ++ +I + R + G M + +
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIIT--YNTLIDGLCKTGRAPEANRLFGDMKAKFCN- 354
Query: 355 KSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
DV C +R+D LF D +K + T+ LV GY AGL
Sbjct: 355 ---PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 411
Query: 411 DSVINEM 417
+ ++ EM
Sbjct: 412 ERLLEEM 418
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K P A +F M+A+ PD ++ LI + A +LF+ M+
Sbjct: 325 YNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 384
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ T+ + G+ + G VD + +A+ S +V TY SL+ G K
Sbjct: 385 K-QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R + M G P++ +++ C K L+ ++G G + N + L
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ +C G ++E + LE L +
Sbjct: 504 IGGFCGTGDLEEARKMLERLER 525
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 2/186 (1%)
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
LC + + + + + + PN TY+ I+GF + V +G + N
Sbjct: 17 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPN 76
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY ++IHG + D+ + + +M+ G +P++ +L GLC +D L
Sbjct: 77 VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 136
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ G + ++ L+ C+ G++D + E + + P+V+ +S +I
Sbjct: 137 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA--YSTLIAGLCK 194
Query: 334 SDRLDD 339
+ RLD+
Sbjct: 195 TGRLDE 200
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 55/145 (37%)
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
E + N T+ I G + ++A G N TY LI+G K
Sbjct: 2 ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+EM G+ P++ V+ G C + K+D + ++ G N L+
Sbjct: 62 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121
Query: 294 YCELGRVDELEEQLETLTKCNQSPE 318
C G +DE E L+ + + P+
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPD 146
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 3/202 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKML--KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL K ++V R+ K + +G + + Y LI + A + M
Sbjct: 431 TSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G++P+ + SLI +GD+ A + E + E K + Y + G G +
Sbjct: 491 NGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMS 550
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM-MSLGIIPSIPILEKV 255
A + A +G Y +LI G + ++ EEM +S P+ E V
Sbjct: 551 AALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAV 610
Query: 256 LEGLCARRKLDRVKSFLKFLLG 277
++ L + + + LLG
Sbjct: 611 IQELAREGRHEEANALADELLG 632
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 2/212 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M G P++ +N+L+ A +G++ A + +M KPN T+++ +
Sbjct: 29 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 88
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G ++ K + + G + +V +Y +L+ G K + EM G++
Sbjct: 89 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 148
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ C L++ + + + G ++NE L+ +C+ G +D+
Sbjct: 149 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 208
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+E + KC P V+ ++ +I Y R+D
Sbjct: 209 VEEMRKCGIQPSVVC--YNALINGYCKLGRMD 238
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 141/344 (40%), Gaps = 51/344 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y L++ KV + ++ VF+ M +G+ PD F SLI A +G++ A++L
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178
Query: 167 -------------------------EIMVSSEEYK-----PNSKTYDAFISGFSSLGNVD 196
+ +++ EE + P+ Y+A I+G+ LG +D
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A +V TY ++I G K + DS + ++M+ G++P ++
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++L+ + +L G + +E L+ +C+ G V++ + + +
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 358
Query: 317 PEVLLH--FFSG-------------IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
P+V+ + +G + +LY D+++Y + FKS +
Sbjct: 359 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 418
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
C D+ ++ + ++KL + Y L+ G+ R G
Sbjct: 419 KGFCMKGLMKEADK--VYQSMLDRNWKLDGSVYSILIHGHCRGG 460
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A VF M +G+ PD +N+L+ G + +L++F M + P+
Sbjct: 93 KAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM-TQRGLVPDV 151
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+ + I GN++ A G +N T+ +LI G K D EE
Sbjct: 152 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 211
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M GI PS+ ++ G C ++D + ++ + K + ++ YC++G
Sbjct: 212 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 271
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+D + + + K P+ + +S +IR RL+D
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAIT--YSSLIRGLCEEKRLND 309
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A+ + M +G+ PD ++ LI S A L +
Sbjct: 329 YTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL-FKL 387
Query: 171 SSEEYKPNSKTYDAF---------------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
E+ P++ YDA + GF G + +K Y + + + ++
Sbjct: 388 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 447
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
Y LIHG + + F+++M+ G P+
Sbjct: 448 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 2/221 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F ++ PD FN L+ A + SG V A +FE M +S + PN TY I
Sbjct: 84 ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI 143
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G +D + G NV TY L+ G KA D +EM G
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + +L GLC R+LD ++ ++ G L++ +C +VD
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++ +++ P+V+ ++ +I RLDD + + +M
Sbjct: 264 IQVMSERGCPPDVI--NYNTVIAGLCRDARLDDAQALLKQM 302
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L ++ +I K ++ A +F M + KP+ + +LI G+V A+ +FE
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MV E ++P TY++ + G +G ++ + I + +Y +LI G +
Sbjct: 447 LMV--ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ ++ + + G + + ++ LC +++L L+ G+K
Sbjct: 505 SCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 16/226 (7%)
Query: 91 LVLEWRLDKMLKGNESC--------------LDEYACLIALSGKVQNVPFAMHVFTSMEA 136
L +WR+D K +C YA +I + + A+ + M
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ PD + F+ +I + S D+ A +F +M S E KPN Y A I G S G VD
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM-SERECKPNPVAYAALIDGLSKGGEVD 439
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + + F V TY S++ G + R E M+ P ++
Sbjct: 440 KAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GLC ++ + + G+ + + LV C+ R+ +
Sbjct: 499 RGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSD 544
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M +G +PD ++N+L+ S + AL L ++M+ S Y P TY++ + F
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY-PTVVTYNSLMELF 251
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
VD + G +V Y ++I G + D ++M++ +P +
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311
Query: 250 PILEKVLEGLCARRKLD 266
+++GLC ++D
Sbjct: 312 ITYSTIIDGLCKDWRVD 328
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLIHG KA D +EM GI P + + V++GLC + + K +
Sbjct: 32 TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV 91
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS-PEVLLH 322
G + LV + GRV+E + E++ +Q P V+ +
Sbjct: 92 AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 2/221 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F ++ PD FN L+ A + SG V A +FE M +S + PN TY I
Sbjct: 84 ALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI 143
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G +D + G NV TY L+ G KA D +EM G
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + +L GLC R+LD ++ ++ G L++ +C +VD
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++ +++ P+V+ ++ +I RLDD + + +M
Sbjct: 264 IQVMSERGCPPDVI--NYNTVIAGLCRDARLDDAQALLKQM 302
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L ++ +I K ++ A +F M + KP+ + +LI G+V A+ +FE
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MV E ++P TY++ + G +G ++ + I + +Y +LI G +
Sbjct: 447 LMV--ESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ ++ + + G + + ++ LC +++L L+ G+K
Sbjct: 505 SCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 16/226 (7%)
Query: 91 LVLEWRLDKMLKGNESC--------------LDEYACLIALSGKVQNVPFAMHVFTSMEA 136
L +WR+D K +C YA +I + + A+ + M
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ PD + F+ +I + S D+ A +F +M S E KPN Y A I G S G VD
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM-SERECKPNPVAYAALIDGLSKGGEVD 439
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + + F V TY S++ G + R E M+ P ++
Sbjct: 440 KAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GLC ++ + + G+ + + LV C+ R+ +
Sbjct: 499 RGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSD 544
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M +G +PD ++N+L+ S + AL L ++M+ S Y P TY++ + F
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCY-PTVVTYNSLMELF 251
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
VD + G +V Y ++I G + D ++M++ +P +
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311
Query: 250 PILEKVLEGLCARRKLD 266
+++GLC ++D
Sbjct: 312 ITYSTIIDGLCKDWRVD 328
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLIHG KA D +EM GI P + + V+ GLC + + K +
Sbjct: 32 TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV 91
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS-PEVLLH 322
G + LV + GRV+E + E++ +Q P V+ +
Sbjct: 92 AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 2/218 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A +V M A+G+KP+ SLI G A LF ++ S YKPN TY
Sbjct: 271 VKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 330
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ G + + G + N TY +LI G K F+ +M
Sbjct: 331 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRRE 390
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G P+I +++GLC + K+ L+ G ++++ ++ +C+ G +
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYA 450
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ + + P++ H ++ +I Y ++++ +
Sbjct: 451 LDLFNRMAENGCHPDI--HTYTTLIARYCQQRQMEESQ 486
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++A + +P A + M + G+ N ++ A L +G A +F+ MV+
Sbjct: 120 MVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRG 179
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+++++ A I G G ++ ++ GF ++ T ++ + F V
Sbjct: 180 GLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDV 239
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ M+ +G P++ ++GLC R + + L+ ++ G K N L+
Sbjct: 240 SELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLING 299
Query: 294 YCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C++G + L K + P V H ++ +I Y +L E +GRM +QGL
Sbjct: 300 LCKIGWTERAFRLFLKLIKSSSYKPNV--HTYTVMIGGYCKEGKLARAEMLLGRMVEQGL 357
Query: 353 S 353
+
Sbjct: 358 A 358
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 7/184 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQN 123
F + ++++ALI L KK ++ +++ +M LD+ Y +I K +
Sbjct: 391 GFQPNIYTYNALIDGL----CKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGH 446
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ +A+ +F M G PD + +LI + + LF+ ++ E P +TY
Sbjct: 447 ITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIE-LVPTKQTYT 505
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I+G+ +G + + + + G + TY +LI G K + YE M+
Sbjct: 506 SMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDK 565
Query: 244 GIIP 247
++P
Sbjct: 566 RLVP 569
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A V QG++ D + +I G + AL LF M + + P+
Sbjct: 410 GKIQE---AYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCH-PD 465
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY I+ + ++ K + +A QTY S+I G K S R +E
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFE 525
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M+ G ++ GLC +L+ ++ + +L
Sbjct: 526 RMVQNGCQADSITYGALISGLCKESRLEEARALYEGML 563
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/297 (17%), Positives = 116/297 (39%), Gaps = 24/297 (8%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+++L +++ L N + Y LI+ K + A + M +G +P+ +N
Sbjct: 344 RAEMLLGRMVEQGLAPNT---NTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYN 400
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G + A + M +++ + + TY I+ G++ +
Sbjct: 401 ALIDGLCKKGKIQEAYKVLR-MANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAE 459
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G ++ TY +LI + R + + +++ +++ ++P+ ++ G C K
Sbjct: 460 NGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTS 519
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE-----TLTKCNQSPEVLLH 322
+ ++ G + + L+ C+ R++E E L C +P L
Sbjct: 520 ALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAF 579
Query: 323 FF---SGIIRLYALSDRLDDVEY------------SVGRMGKQGLSFKSAEDVEMVI 364
+ + ++ DRLD ++G + L K A DV++ +
Sbjct: 580 EYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALDVDLAV 636
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 2/229 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
GN + Y + K V A HV M +G+KP+ SLI G A
Sbjct: 246 GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LF +V S YKPN TY I G+ G + + G + N TY +LI
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLID 365
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + FD +M G +P+I ++ G C + K+ + L+ G
Sbjct: 366 GHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCP 425
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
++ L+ +C+ G + + + + + P++ ++ II +Y
Sbjct: 426 DKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDI--DTYTTIIAMY 472
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 5/232 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+P+++++ A + G G + + AA GFS++ T ++ + F V
Sbjct: 178 RPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+ M+ +G P++ ++GLC R + + L+ ++G G K N L+ C
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297
Query: 296 ELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
++G + L K + P V H ++ +I Y +L E +GRM +QGL+
Sbjct: 298 KIGWTERAFRLFLKLVKSSSYKPNV--HTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA- 354
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAG 405
+ +I + R ++DR ++ +K + TY+ ++ G+ + G
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 3/202 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G Q FA H + + G++PD+ F +L+ C G A +L M E + +
Sbjct: 158 GLRQRHHFA-HARQAFDGMGVRPDARSFRALVLGCCQEGRFEEADALLAAMWR-EGFSLD 215
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
S T + F G + + + G NV Y + + G K E
Sbjct: 216 SATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLE 275
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM+ G+ P++ +++GLC +R + FLK + +K N + ++ YC+
Sbjct: 276 EMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKE 335
Query: 298 GRVDELEEQLETLTKCNQSPEV 319
G++ E L + + +P
Sbjct: 336 GKLARAEMLLGRMVEQGLAPNT 357
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A V +QG+ PD + LI G + AL LF M + + P+
Sbjct: 406 GKIQQ---AYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCH-PD 461
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY I+ + ++ + + ++ G QTY S+I G + S + +E
Sbjct: 462 IDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFE 521
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC----- 293
M+ G +P ++ GLC +L+ ++ + +L +++M V C
Sbjct: 522 RMVQHGCLPDPITYGALISGLCKESRLEEARALFETML------DKHMVPCDVTCVTLAY 575
Query: 294 -YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
YC + L+ L K Q+ H ++R + D LD
Sbjct: 576 EYCRRDKTTIAVSFLDGLDKRQQA-----HAADALVRKLSAVDNLD 616
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 13/248 (5%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIA 116
++ + + F + ++++A+I KK ++ +++ +M C D+ Y LI
Sbjct: 380 MNKMKLEGFLPNIYTYNAIIGGFC----KKGKIQQAYKVLRMATSQGLCPDKVTYTMLIT 435
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K ++ +A+ +F M PD + ++I + + LF+ +S
Sbjct: 436 EHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSI-GLV 494
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +TY + I+G+ +G + K + + G + TY +LI G K +
Sbjct: 495 PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARAL 554
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+E M+ ++P + C R D+ + FL G + + A LV+ +
Sbjct: 555 FETMLDKHMVPCDVTCVTLAYEYCRR---DKTTIAVSFLDGLDKRQQAHAADALVR---K 608
Query: 297 LGRVDELE 304
L VD L+
Sbjct: 609 LSAVDNLD 616
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 3/221 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A + M QG+ P++ + +LI G A L M
Sbjct: 325 YTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKM- 383
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I GF G + K + G + TY LI K
Sbjct: 384 KLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHI 443
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M P I ++ C +R++++ + L G + +
Sbjct: 444 TYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSM 503
Query: 291 VKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFFSGIIR 329
+ YC +G+ + E + + C P SG+ +
Sbjct: 504 IAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCK 544
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 6/239 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ VF + A+G +PD ++ LI G + A+ LF M+
Sbjct: 92 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 151
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN+ TY++ ISGF +G +D G S +V TY +L++G K
Sbjct: 152 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 211
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M G+ P++ +++GLC +L L + +
Sbjct: 212 DDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 271
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF---FSGIIRLYALSDRLDDVEYSVGR 346
+ YC RV++LEE + + + P ++ F G+ ++ S+ ++ VE + R
Sbjct: 272 LDGYC---RVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR 327
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 6/215 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P + +NSLI LC + + A L E MV S P+ TY I+GF D
Sbjct: 52 PTAVTYNSLISG-LCKAERASEAYDLLEEMVYSGCI-PDIFTYTTLITGFCKSKKSDDAL 109
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + +A GF +V TY LI G K R +++D F + S +P+ ++ G
Sbjct: 110 RVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISG 169
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C K+D + L+ + G + L+ +C+L R+D+ + L +T+ +P
Sbjct: 170 FCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
V+ F+ ++ +RL D + +G M ++ S
Sbjct: 230 VVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 262
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 4/230 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K + A + M G PD + +LI S AL +FE +V
Sbjct: 57 YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 116
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARD 229
+ ++P+ TY I G G + + I +G + N TY SLI G +
Sbjct: 117 -ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D E M G P + ++ G C +LD L + G N
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTS 235
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L+ C R+ + L + + + SP V + ++ I+ Y ++L++
Sbjct: 236 LMDGLCRENRLSDAVHILGEMRRKSCSPTV--YTYNTILDGYCRVNQLEE 283
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 8/275 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M ++ + D+A++N+LI + AL L +M ++ Y + TY I G G
Sbjct: 1 MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVM-AANGYDASVVTYTTLIDGLCKSG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++DA AG + NV TY +LI G KAR + + M+ G P +
Sbjct: 60 DLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYN 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCELGRVDELEEQLETLTK 312
++ GLC ++D L+ L+ +I + + + C+ G++D+ E LE + +
Sbjct: 120 SLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR 179
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
SP+V+ F II ++R+DD M ++G S +++ + R
Sbjct: 180 GGISPDVVT--FCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLT-YSIMLDNLSRANR 236
Query: 373 YDRLDLFLDHI--KGSYKLRRATYDFLVAGYRRAG 405
D ++ L+H+ G Y L ATY L+ RAG
Sbjct: 237 LDTVEEVLEHMVKSGHYAL-SATYAPLIHALIRAG 270
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 6/216 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+++S ++ LI L +S AQ +L+ D N + Y LI K +
Sbjct: 40 GYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPN---VVTYTALIDGLCKARRP 96
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
A+ M G +PD +NSLI C+ + L L E+M+ S P+ TY+
Sbjct: 97 HDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRI-PDVVTYN 155
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
FISG G +D + G S +V T+ S+I G KA D + ++ M+
Sbjct: 156 TFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLER 215
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
G +P +L+ L +LD V+ L+ ++ G
Sbjct: 216 GCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+ + M+ GI PD F S+I + + A +F+ M+ P+S TY +
Sbjct: 170 GLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLE-RGCVPDSLTYSIML 228
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S +D + + + +G TY LIH ++A D +S YE+ M G +
Sbjct: 229 DNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCV 288
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE---L 303
+ + LC K K+ L ++ G N ++ C+ G VD+ L
Sbjct: 289 MEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKL 348
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
++ C P+V+ FF+ +I + + RL +
Sbjct: 349 SRKMLDSGCCK--PDVI--FFNTLISGFCKAGRLSQAQ 382
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
P A ++ M G P+ +N +I SG+V A L M+ S KP+ ++
Sbjct: 308 PLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNT 367
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISGF G + + A V +V TY ++I G K EEM ++
Sbjct: 368 LISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAV 427
Query: 244 G 244
G
Sbjct: 428 G 428
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 118/257 (45%), Gaps = 5/257 (1%)
Query: 68 NSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+++ +++ALI L + + ++A +LE + KG E Y +++ ++ V
Sbjct: 77 SANTVAYNALINGLCKDENIERAYKLLE---EMASKGYEPDNITYNTILSGLCRMGKVSE 133
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM-VSSEEYKPNSKTYDAF 185
A F SM ++G PD +N L+ A G V A LF+ M ++ + P+ TY+
Sbjct: 134 AKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTL 193
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I GF + D K + IA G+ + TY S++ G + + D + +++M+ G
Sbjct: 194 IDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+ VL G C + R + + + + + ++ C+ +VD+ +
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313
Query: 306 QLETLTKCNQSPEVLLH 322
LE ++K P+V+ +
Sbjct: 314 VLEEMSKIGAVPDVVTY 330
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 10/244 (4%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDK 99
N ++S L ++ VS+ K DS+ ++ +++ L+ +L K+ ++ W L K
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALY----KEGKVAEAWGLFK 174
Query: 100 ML----KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+ + L Y LI +V+ AM +F + A+G PD+ +NS++
Sbjct: 175 TMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 234
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
++ A +F+ MV S PN TY +SG +GN+ + Y FS +V
Sbjct: 235 KSNMDEAEEMFKKMVDSG-CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVL 293
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++I KA+ D + EEM +G +P + +L+GLC +D+ +
Sbjct: 294 LCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM 353
Query: 276 LGGG 279
+ G
Sbjct: 354 VDNG 357
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +N+ A + M ++G +PD+ +N+++ G V A F+ M
Sbjct: 83 YNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSM- 141
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIA-AGFSVNVQTYESLIHGSLKAR 228
S Y P+ Y+ + G V +A + ++A + ++ TY +LI G +
Sbjct: 142 PSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVE 201
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D + ++++++ G +P +L GL + +D + K ++ G N
Sbjct: 202 KTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYS 261
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
++ +C +G + E E +T+ SP+VLL + +I + + ++DD + M
Sbjct: 262 IVLSGHCRVGNMARCLELYEEMTEKRFSPDVLL--CNAVIDMLCKAKKVDDAHKVLEEMS 319
Query: 349 KQG 351
K G
Sbjct: 320 KIG 322
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G +PD ++++I +G V AL + E M + + P+ TY + G
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEM-TEKGVNPDVATYTIIVDRLCRAG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD ++ + I G S N Y +LI+G K + + + EEM S G P
Sbjct: 60 KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGW 280
+L GLC K+ K F + G+
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGY 146
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 5/227 (2%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I LSG +V N+ + ++ M + PD + N++I + V A + E M S
Sbjct: 262 IVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM-SK 320
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+ TY+ + G VD ++ ++ + G + ++ +Y +++G K
Sbjct: 321 IGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHD 380
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ M+ ++P + +++GLC KLD K L + + L+
Sbjct: 381 ARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMH 440
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRL 337
C R DE + + + +VL H +G+ R L+ L
Sbjct: 441 GLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL 487
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 3/201 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A +F++M G PD ++ ++ + V A LF+ M+ + P+
Sbjct: 339 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE-RKLVPDV 397
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ + G G +D + T +L+HG + + D R ++
Sbjct: 398 VTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQY 457
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--QKLVKCYCEL 297
M+ G + + VL GLC KL + F K ++ + + ++ LV E
Sbjct: 458 MVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEA 517
Query: 298 GRVDELEEQLETLTKCNQSPE 318
GRVD+ + + +T +P+
Sbjct: 518 GRVDQAVDYFQQMTGSGCAPD 538
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 40/318 (12%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S ++ L+TS+ L L ++D G + LI + V FA
Sbjct: 60 STVDFNKLLTSIAKMKHHSTLLSLSHQMDSF--GIPPNIYTLHILINSFCHLNRVGFAFS 117
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + G +PD+A F +LI G + AL LF+ M+ E ++P+ TY I+G
Sbjct: 118 VLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIG-EGFRPDVVTYGTLINGL 176
Query: 190 SSLGN--------------------------VDAMNK---------WYAANIAAGFSVNV 214
+GN +D++ K ++ + G S ++
Sbjct: 177 CKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDI 236
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLIH ++ V EM+ I+P + V++ LC K+ +
Sbjct: 237 FTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDK 296
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + N L+ +C L +DE + +T+ P V+ ++ +I Y
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVI--SYNTLINGYCKI 354
Query: 335 DRLDDVEYSVGRMGKQGL 352
R+D Y G M +Q L
Sbjct: 355 QRIDKAMYLFGEMCRQEL 372
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 14/269 (5%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEY 111
S++ T S DIF +NS LI +L + K +L +D + + +
Sbjct: 225 SEMVTKGISPDIFTYNS-------LIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMV 170
+ GKV A V M +G++P+ + +L+ CL S ++ A+ +F+ MV
Sbjct: 278 VDALCKEGKVTE---AHDVVDKMIQRGVEPNVVTYTALMDGHCLLS-EMDEAVKVFDTMV 333
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN +Y+ I+G+ + +D + + TY +LIHG
Sbjct: 334 C-KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ EM++ IP++ +L+ LC R L + LK + G + +
Sbjct: 393 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA 452
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ C G ++ + L+ P+V
Sbjct: 453 IDGMCRAGELEAARDLFSNLSSKGLQPDV 481
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 86/237 (36%), Gaps = 36/237 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q + AM++F M Q + PD+ +++LI + A++LF MV
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 403
Query: 171 SSEEYKPNSKTY-----------------------------------DAFISGFSSLGNV 195
+ + PN TY + I G G +
Sbjct: 404 ACSQI-PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGEL 462
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+A ++ + G +V TY +I+G + D + + EM G + I +
Sbjct: 463 EAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 522
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
G + R L+ ++ G+ + + VK + G L++ L +
Sbjct: 523 TRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILREFVQ 579
>gi|413945320|gb|AFW77969.1| hypothetical protein ZEAMMB73_790751 [Zea mays]
Length = 509
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 150/318 (47%), Gaps = 14/318 (4%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ E+A I+L+G+ + A +F A P+ ++N+L+ A + SG + + +F
Sbjct: 151 ISEFALAISLAGRAGDHDAAAALFADGTAIH-SPNLGLYNALMSAYMHSGLLDNCIEVFH 209
Query: 168 IMVSSEEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ PN +Y+ I+ F VD M + + A+G + TY ++I G L
Sbjct: 210 ALERDPRCGPPNVDSYNILIALFGRSILVDHMERTLQSLDASGQPRTIGTYNAIISGYLT 269
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A +D ++ ++EM+S + P + +L G + +++ + G K++
Sbjct: 270 AWMWDKMEASFQEMVSFHVAPDATTHKLMLRGYAHAGMICKMEQAYERACKLGIKVDILH 329
Query: 287 AQKLVKCYCE---LGRVDELEEQLETLTKCNQSP--EVLLHFFSGIIRLYALSDRLDDVE 341
+ ++ YC+ +GR+ ++E+ L+ L + P VLL I++YA + +E
Sbjct: 330 IRAMLCAYCKFYHVGRIQKIEDLLKKLGPDDYRPWLNVLL------IKVYAQEGLTEGME 383
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAG 400
+ ++ + + + +IC+YF+ A DRL LF+ + +KL R+ Y +
Sbjct: 384 LYISEALERNTIVTAVKVMRSIICNYFQYDAVDRLALFVRRAEDAGWKLCRSLYHCKMVM 443
Query: 401 YRRAGLSGKLDSVINEMK 418
Y + ++ V++EM+
Sbjct: 444 YGKHYRLEEMHGVLDEME 461
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 106/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G++PD+A F +LI G + AL LF+ M+ E ++PN TY
Sbjct: 120 FAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG-EGFQPNVVTYGTL 178
Query: 186 ISGFSSLGNVDAMNKW-----------------------------------YAANIAAGF 210
I+G +GN +A + ++ + G
Sbjct: 179 INGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGI 238
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S ++ TY SLIH ++ V +M++ I+P + I V++ LC K+
Sbjct: 239 SPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 298
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ ++ G + N L+ +C +DE + +T+ +P V+ ++ +I
Sbjct: 299 VVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVI--SYNTLING 356
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y R+D Y M ++ L
Sbjct: 357 YCKIQRMDKATYLFEEMCQKEL 378
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD +F++++ A G + A + ++M+ +PN TY+A
Sbjct: 260 HVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII-RGVEPNVVTYNAL 318
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G +D K + + G++ NV +Y +LI+G K + D +EEM +
Sbjct: 319 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 378
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP+ ++ GLC +L + ++ G + + L+ C+ +DE
Sbjct: 379 IPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 438
Query: 306 QLETLTKCNQSPEVLLH 322
L+T+ N P++ ++
Sbjct: 439 LLKTIEGSNMDPDIQIY 455
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M +G++P+ +N+L+ ++ A+ +F+ MV + Y PN +Y+ I
Sbjct: 296 AHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG-YAPNVISYNTLI 354
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +D + N TY +L+HG + EM++ G I
Sbjct: 355 NGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI 414
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+ LC + LD + LK + G + + ++ C G ++ +
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 474
Query: 307 LETLTKCNQSPEV 319
L+ P V
Sbjct: 475 FSNLSSKGLRPNV 487
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF +M G P+ +N+LI + A LFE M +E PN+ TY+ +
Sbjct: 331 AVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ-KELIPNTVTYNTLM 389
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + +A G ++ TY L+ K D + + +
Sbjct: 390 HGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMD 449
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I I V++G+C +L+ + L G + N ++ C G +DE
Sbjct: 450 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE 505
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA + E K L N + + G++Q+ A+ +F M A G PD A +
Sbjct: 365 KATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQD---AIALFHEMVAHGQIPDLATYR 421
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
L+ + A++L + + P+ + Y I G G ++A ++ +
Sbjct: 422 ILLDYLCKKSHLDEAMALLKT-IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSS 480
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G NV+TY +I+G + D ++ + EM G P + +GL ++ R
Sbjct: 481 KGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALR 540
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+ +L G+ + + LV+ C+ D+L++ ++ +
Sbjct: 541 AIQLLQEMLARGFSADVSTTTLLVEMLCD----DKLDQSVKQI 579
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++E + PD ++ +I +G++ A +F + SS+ +PN +TY I
Sbjct: 436 AMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL-SSKGLRPNVRTYTIMI 494
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G +D NK + G S + TY ++ G L+ ++ + +EM++ G
Sbjct: 495 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 554
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL 272
+ ++E LC + VK L
Sbjct: 555 ADVSTTTLLVEMLCDDKLDQSVKQIL 580
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q + A ++F M + + P++ +N+L+ G + A++LF MV
Sbjct: 350 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMV 409
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY + ++D + ++Q Y +I G +A +
Sbjct: 410 AHGQI-PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 468
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ + + S G+ P++ ++ GLC R LD + G G
Sbjct: 469 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 517
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 17/208 (8%)
Query: 72 FSWDALITSLQSSSPKKA-----QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+++ALI KA QL+ R++ ++ + + C GKV
Sbjct: 302 LTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCC----GGKVHK--- 354
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDA 184
AM T M G+ P++ FNSLI G+ AL L ++M EEY P+ +TY
Sbjct: 355 AMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLM---EEYGVLPDRQTYAI 411
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
FI G ++ + ++ G + Y SL+HG + D DS E+M S
Sbjct: 412 FIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASEN 471
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
+P + +++GLC ++LDR L
Sbjct: 472 CMPDVHTYNTLIDGLCKVKRLDRAIDLL 499
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 3/233 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V V +G+ + +N+LI GD+ AL + ++M P
Sbjct: 278 KHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLM-KRNRVNPGV 336
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+T++ I GF G V + AG S N T+ SLI G + R +
Sbjct: 337 QTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDL 396
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G++P ++ LC +L+ S L G K + + LV YC++G
Sbjct: 397 MEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGD 456
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+D +E + N P+V H ++ +I RLD + +M KQG+
Sbjct: 457 IDSAFGLMEKMASENCMPDV--HTYNTLIDGLCKVKRLDRAIDLLDKMKKQGI 507
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---DVVTALSLFEIMVSSEEYK 176
KV+ V A + M +G+ P+ +N+LI G DV L EI + +
Sbjct: 208 KVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEI----QRHS 263
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY + G G V K I G ++ V TY +LI+G K D +
Sbjct: 264 PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDV 323
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M + P + +V+ G C K+ + +FL + G G N L+ C
Sbjct: 324 LQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCS 383
Query: 297 LG 298
+G
Sbjct: 384 VG 385
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 57/275 (20%)
Query: 97 LDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
++KM +E+C+ + Y LI KV+ + A+ + M+ QGI+P + FN LI
Sbjct: 464 MEKM--ASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQM 521
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS-----GFSSLGNVD------------ 196
L A ++E M+SS KP+ +TY IS G + N+D
Sbjct: 522 LWDKKHADAAKMYEQMISSG-CKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVF 580
Query: 197 ----AMNKWYAANIAAG-----FSVNVQ-----------TYESLIHGSLKARDFDSVD-- 234
N A + AG F +V+ TY L++ D D+ D
Sbjct: 581 PDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNE 640
Query: 235 ------------RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+E+M P I + +L GLC + +L+ V+ L + G +
Sbjct: 641 KIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILL 700
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+E+M+ L+ CYC L E EQ ++ + P
Sbjct: 701 DEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQP 735
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 44/331 (13%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIAL 117
LD D+ + N++ ++ +S S +P+ A L+ + MLK G Y LI
Sbjct: 46 LDPSDVRSHNAALIAY----SSRGSRAPRLAHLLASF--GAMLKSGAPPNRCTYNTLINA 99
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM-------- 169
K+ + A M G+ PD+ +N L+ +G + A LF M
Sbjct: 100 HCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACY 159
Query: 170 ---------------------------VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+S +P TY + G + V
Sbjct: 160 DRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALL 219
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ G NV TY +LI G + FD V + E+M P +V+ GLC
Sbjct: 220 GEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKH 279
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K+ L +G G + L+ YC+ G + + L+ + + +P V
Sbjct: 280 GKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGV--Q 337
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
F+ +I + ++ + +M GLS
Sbjct: 338 TFNEVIHGFCCGGKVHKAMAFLTQMAGAGLS 368
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 120/302 (39%), Gaps = 42/302 (13%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV AM +F M+ G KP ++ FN+LI G A+ L E+M+ KP
Sbjct: 126 SGKVHE---AMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKP 182
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +TY+ I + + ++ + +G ++ TY +L + + D+ +R
Sbjct: 183 NERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLI 242
Query: 238 EEMMSLG--IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+M + P+ ++ G C + FL + G N + L+K Y
Sbjct: 243 LKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYL 302
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
++ D +EE L + + P+V+ +S I+ ++ S +D+ E
Sbjct: 303 DITDTDGVEEALTLMEEFGIKPDVVT--YSTIMNAWSSSGLMDNCE-------------- 346
Query: 356 SAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
++F D +K + Y L GY RAG K ++++N
Sbjct: 347 ---------------------EIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLN 385
Query: 416 EM 417
M
Sbjct: 386 SM 387
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I + G K N+ A+ M+ G+ P+ VFNSLI L D+ +
Sbjct: 255 NERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYL---DITDTDGVE 311
Query: 167 EIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E + EE+ KP+ TY ++ +SS G +D + + + A ++Q Y L G
Sbjct: 312 EALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGY 371
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A D + M G+ ++ I ++ G CA K+D + + G +N
Sbjct: 372 VRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNL 431
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ L+ Y E + + EE L T+ + +PE+
Sbjct: 432 KTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEM 466
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 36/162 (22%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD----- 183
T ME GIKPD +++++ A SG + +F+ MV +E +P+ + Y
Sbjct: 312 EALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAE-IEPDIQAYSILAKG 370
Query: 184 ------------------------------AFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
ISG+ + G +D + Y G +N
Sbjct: 371 YVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLN 430
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
++TYE+LI G +A+ + M G+ P + +E V
Sbjct: 431 LKTYETLIWGYGEAKQPWKAEELLVTMEESGVAPEMSTIELV 472
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V A +F++M ++ + PD ++ LI ++ A L++ M+ PN
Sbjct: 133 KAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN-CVPN 191
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+AF++G G + Y I+AG S +V TY +LIHG AR D +E
Sbjct: 192 VTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFE 251
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+S G P+ +L GLC K D + ++ G ++ L+ +C +G
Sbjct: 252 AMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVG 311
Query: 299 RVDELEEQLETLTKCNQSPEVL 320
++++ E + + P+V+
Sbjct: 312 KIEQAVEVFDEMVSKGHDPDVV 333
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++ A+ VF M ++G PD +N L+ +G A LF++MV S E KP+
Sbjct: 311 GKIEQ---AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMV-SRECKPD 366
Query: 179 SKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +++ I G S + DA+ + G S ++ TY SLI G + + +
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCA 261
+E+ L + P +LE + A
Sbjct: 427 KEIDRLKLSPDPHAFNVLLEAMYA 450
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 2/164 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CL+ K A +F M +G PD + +L+ G + A+ +F+ MV
Sbjct: 265 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMV 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + P+ Y+ + GF G + + ++ + ++ +I G KA+
Sbjct: 325 S-KGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRL 383
Query: 231 DSVDRFYEEM-MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
D +E M G P + ++ GLC ++L K
Sbjct: 384 DDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFK 427
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V+ M + G PD +++LI + A LFE M+S +PN+ TY+ +
Sbjct: 211 AQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMIS-RGCRPNAVTYNCLL 269
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G D ++ + + G + TY +L++G + ++EM+S G
Sbjct: 270 HGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD 329
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+G K + + ++ K + ++ + R+D+ E
Sbjct: 330 PDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEV 389
Query: 307 LETLTK 312
E + +
Sbjct: 390 FERMEQ 395
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 154 LC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-------DAMNKWYAAN 205
LC +G V +ALSL E M+ Y P+ T+ I+ + MN+ +
Sbjct: 59 LCKAGRVDSALSLLETMI-KRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTR 117
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-LGIIPSIPILEKVLEGLCARRK 264
++ FS Y SL++ KA+ + M+S ++P + +++G C +
Sbjct: 118 ASSCFS-----YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
L R + K ++ N + GR+ + + E + SP+V+ +
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVIT--Y 230
Query: 325 SGIIRLYALSDRLD 338
S +I ++L+ + D
Sbjct: 231 STLIHGFSLARKHD 244
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ + + + A V M +G P+ V+N+LI + + +
Sbjct: 332 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 391
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MV S+ S TY+ I G+ G D + ++ GF+VN +
Sbjct: 392 GSLNKAIEIKDLMV-SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ S+I FDS RF EM+ + P +L ++ GLC K + L
Sbjct: 451 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 510
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ ++ + L+ CE G++DE
Sbjct: 511 NKGFVVDTRTSNALLHGLCEAGKLDE 536
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ PD +F + I A G V A+ LF M PN T++ I G G D
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD 325
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + TY L+ G +A+ +EM G P++ + ++
Sbjct: 326 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 385
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ L++ ++ G + + L+K YC+ G+ D E L+ +
Sbjct: 386 DSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 38/292 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + +G D +N+LI C + A + MV KP++ TY I
Sbjct: 537 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 595
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ V+ +++ G +V TY +I G KA + F++EMMS +
Sbjct: 596 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 655
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + ++ C +L + + G N L+K + RV+E +
Sbjct: 656 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLL 715
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E + P V ++ +I Y ++ VE + M
Sbjct: 716 FEEMRMEGLEPNVF--HYTALIDGYGKLGQMVKVECLLREM------------------- 754
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
H K + + TY ++ GY R G + ++NEM+
Sbjct: 755 ---------------HSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEMR 790
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + F M ++ ++P++ V+N LI A SG + AL L E M
Sbjct: 626 YSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM- 684
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PNS TY + I G S + V+ + G NV Y +LI G K
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 744
Query: 231 DSVDRFYEEMMSLGIIPS 248
V+ EM S + P+
Sbjct: 745 VKVECLLREMHSKNVHPN 762
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 13/259 (5%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI S +++ S KA + + + K L S Y LI K
Sbjct: 373 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQA 429
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 430 DNAERLLKEMLSIGFNVNQGSFTSVICL-LCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 488
Query: 185 FISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISG G + A+ W+ + GF V+ +T +L+HG +A D R +E++
Sbjct: 489 LISGLCKHGKHSKALELWFQF-LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 547
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G + ++ G C ++KLD FL ++ G K + L+ C L ++++
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---CGLFNMNKV 604
Query: 304 EEQLETLTKCNQS---PEV 319
EE ++ C ++ P+V
Sbjct: 605 EEAIQFWDDCKRNGMLPDV 623
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A +F M +G++P+ +
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 733 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 792 KGIVPDSITYKEFIYGYLK 810
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 2/227 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + Y+ LI + V A+ + + G+ PD ++ +I C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ F+ M+S + +PN+ Y+ I + G + + G S N
Sbjct: 636 AERTEEGQEFFDEMMS-KNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 694
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + +EEM G+ P++ +++G ++ +V+ L+ +
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 754
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
N+ ++ Y G V E L + + P+ + +
Sbjct: 755 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 129/312 (41%), Gaps = 8/312 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK AM +F+ M G +PDS+V+N+LI A L S D ++ AL F
Sbjct: 135 YSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYF 194
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M + +PN TY+ + F+ NV+ +N + + S ++ TY ++ K
Sbjct: 195 EKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGK 254
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ ++ D+++ K LL +
Sbjct: 255 NGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPT 314
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ Y + + + E L+ +TK +P + + +I +Y D +
Sbjct: 315 FNSMITNYGKARQKENAESVLQKMTKMKYTPNFIT--YESLIMMYGFCDSVSKAREIFDD 372
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAG 405
M + G K + ++ Y DL D+ + L + TY L Y +A
Sbjct: 373 MIESGKEVK-VSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKAN 431
Query: 406 LSGKLDSVINEM 417
+ + ++ M
Sbjct: 432 MKKLVQKLLKHM 443
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ + + + A V M +G P+ V+N+LI + + +
Sbjct: 319 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 378
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MV S+ S TY+ I G+ G D + ++ GF+VN +
Sbjct: 379 GSLNKAIEIKDLMV-SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 437
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ S+I FDS RF EM+ + P +L ++ GLC K + L
Sbjct: 438 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 497
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ ++ + L+ CE G++DE
Sbjct: 498 NKGFVVDTRTSNALLHGLCEAGKLDE 523
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ PD +F + I A G V A+ LF M PN T++ I G G D
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD 312
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + TY L+ G +A+ +EM G P++ + ++
Sbjct: 313 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 372
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ L++ ++ G + + L+K YC+ G+ D E L+ +
Sbjct: 373 DSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 426
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + F M ++ ++P++ V+N LI A SG + AL L E M
Sbjct: 613 YSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM- 671
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PNS TY + I G S + V+ + G NV Y +LI G K
Sbjct: 672 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 731
Query: 231 DSVDRFYEEMMSLGIIPS 248
V+ EM S + P+
Sbjct: 732 VKVECLLREMHSKNVHPN 749
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 38/292 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + +G D +N+LI C + A + MV KP++ TY I
Sbjct: 524 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 582
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ V+ +++ G +V TY +I G KA + F++EMMS +
Sbjct: 583 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 642
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + ++ C +L + + G N L+K + RV+E +
Sbjct: 643 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLL 702
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E + P V ++ +I Y ++ VE + M
Sbjct: 703 FEEMRMEGLEPNVF--HYTALIDGYGKLGQMVKVECLLREM------------------- 741
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
H K + + TY ++ GY R G + ++NEM+
Sbjct: 742 ---------------HSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEMR 777
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 13/259 (5%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI S +++ S KA + + + K L S Y LI K
Sbjct: 360 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQA 416
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 417 DNAERLLKEMLSIGFNVNQGSFTSVICL-LCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 475
Query: 185 FISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISG G + A+ W+ + GF V+ +T +L+HG +A D R +E++
Sbjct: 476 LISGLCKHGKHSKALELWFQF-LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 534
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G + ++ G C ++KLD FL ++ G K + L+ C L ++++
Sbjct: 535 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---CGLFNMNKV 591
Query: 304 EEQLETLTKCNQS---PEV 319
EE ++ C ++ P+V
Sbjct: 592 EEAIQFWDDCKRNGMLPDV 610
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A +F M +G++P+ +
Sbjct: 660 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 719
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 720 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 778
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 779 KGIVPDSITYKEFIYGYLK 797
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 2/227 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + Y+ LI + V A+ + + G+ PD ++ +I C
Sbjct: 563 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 622
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ F+ M+S + +PN+ Y+ I + G + + G S N
Sbjct: 623 AERTEEGQEFFDEMMS-KNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 681
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + +EEM G+ P++ +++G ++ +V+ L+ +
Sbjct: 682 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 741
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
N+ ++ Y G V E L + + P+ + +
Sbjct: 742 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 788
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 13/316 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + + A+ M +GIKPD+ ++N ++ V A LFE MV
Sbjct: 12 YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMV 71
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY+ I+G ++ + + G+ +Y +LI G K +D
Sbjct: 72 K-QRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 130
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +++M+ +P++ +++GL K+ L ++ G N L
Sbjct: 131 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 190
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C++ RVDE + LE + +P V+ ++ ++ +D+L+D + + R
Sbjct: 191 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVT--YNILLNSLCRADKLEDA-FKLFR---- 243
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR-LD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G++ + + + R + + LD L+ + I TYD L G RAG
Sbjct: 244 GMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAG 303
Query: 406 LSGKLDSVINEMKFAE 421
+ ++ +MK +
Sbjct: 304 KVHEAQELMEKMKLTK 319
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ LI L S K Q E LD M+K G + Y+CLI KV+ V A +
Sbjct: 151 TYTTLIDGLSKSG--KVQAAAEV-LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 207
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M QGI P +N L+ + LC D + A LF M + P TY+ +
Sbjct: 208 EQMVTQGIAPTVVTYNILLNS-LCRADKLEDAFKLFRGM-AQRRCHPTVVTYNTLLRALC 265
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+D ++ YA IA G + TY++L G +A E+M
Sbjct: 266 HHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 5/278 (1%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
LI ++ K +L DK K G L Y CLI +V A +F M
Sbjct: 755 LIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDM 814
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
+ G PD+ FN L+ SG + L++ M+S KP++ TY+ IS + N
Sbjct: 815 KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMIS-RRCKPDAITYNIVISSLAKSNN 873
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+D ++ +++ F +TY LI G K + R +EEM G P+ I
Sbjct: 874 LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
++ G + K ++ G + + LV C C GRVDE L
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P+ + ++ II S R+++ M +G+
Sbjct: 994 LDPDFIA--YNRIINGLGKSQRMEEALALYNEMRNRGI 1029
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 6/203 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ AL+ +L + +VL ++ + G + + I + G+ + A +F
Sbjct: 229 TYSALMVALGKKRDSEMVMVLLKEMEDL--GLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G PD + LI A +G + A LF + + + +KP+ Y + F+
Sbjct: 287 RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF-VKMKANGHKPDQVIYITLLDKFNDF 345
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++D ++++ A G+ +V T+ L+ KARDFD ++ M GI+P++
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405
Query: 253 EKVLEGLCARRKLDRVKSFLKFL 275
+ +C + R++ LK L
Sbjct: 406 NTL---ICGLLRAGRIEDALKLL 425
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 18/251 (7%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
++ MEA G PD F L+ + D A + F++M + PN TY+ I G
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM-RKQGILPNLHTYNTLICGLL 413
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G ++ K + G TY + I K+ + +E+M + GI+P+I
Sbjct: 414 RAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L L +L K+ L G + ++KCY ++G+VDE L +
Sbjct: 474 ACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533
Query: 311 TKCNQSPEVL--------LHFFSGIIRLYALSDRLDDVEYS---------VGRMGKQGLS 353
+ P+V+ L+ + + + DR+ D++ S + +GK+G
Sbjct: 534 IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRV 593
Query: 354 FKSAEDVEMVI 364
K+ E E +I
Sbjct: 594 QKAIELFESMI 604
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV + AM +F M G KP+ A+FN LI GD TA LF+ MV
Sbjct: 896 YGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMV 955
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E +P+ K+Y + G VD ++ + G + Y +I+G K++
Sbjct: 956 N-EGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRM 1014
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ Y EM + GI+P +
Sbjct: 1015 EEALALYNEMRNRGIVPDL 1033
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 3/266 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ Q+ T L+ + F + +S++ LI L S L + R+ + +G + L Y
Sbjct: 173 LRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRM--VSEGLKPSLKTY 230
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+ L+ GK ++ M + ME G++P+ F I +G + A +F M
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-D 289
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
E P+ TY I + G ++ + + A G + Y +L+ D D
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLD 349
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ F+ +M + G +P + +++ LC R D + + G N + L+
Sbjct: 350 TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409
Query: 292 KCYCELGRVDELEEQLETLTKCNQSP 317
GR+++ + L+T+ P
Sbjct: 410 CGLLRAGRIEDALKLLDTMESVGVQP 435
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I GK A+ F M+A+GI P+ N+ + + G + A ++F +
Sbjct: 440 YITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGL- 498
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+S TY+ + +S +G VD + I G +V SLI KA
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + ++ M + + P++ +L GL ++ + + ++ N L
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTL 618
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C+C+ V+ + +T + P+VL +
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 1/165 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ KV V A+++ + M G +PD V NSLI + +G V A +F+ M
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM- 568
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P TY+ +SG G V + + + I S N ++ +L+ K +
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEV 628
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ + + +M + P + V+ GL K++ F L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+G+V A++ F +++ G+ PD +N +I S + AL+L+ M +
Sbjct: 973 LCLAGRVDE---ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRG 1028
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P+ TY++ + G V+ + Y AG +V TY +LI G + + +
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088
Query: 235 RFYEEMMSLGIIPSI 249
Y+ MM G P+I
Sbjct: 1089 TVYKNMMVDGCNPNI 1103
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 26/298 (8%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A+ +F+ M KPD +N++I + V A F + S P+
Sbjct: 624 KNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHPDH 681
Query: 180 KTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T + G G + DA++ F VN +E L+ G+L + D F E
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741
Query: 239 EMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E++ GI L ++ LC +R+L + F KF G ++ L C +
Sbjct: 742 ELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLG------ISPTLASYNCLI 795
Query: 298 GRVDELE------EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
G + E+ + + + +P+ F+ ++ ++ S ++ + + + K+
Sbjct: 796 GELLEVHYTEKAWDLFKDMKNVGCAPDAFT--FNMLLAVHGKSGKITE----LFELYKEM 849
Query: 352 LSFKSAEDV---EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+S + D +VI S + D+ LD F D + ++ TY L+ G + G
Sbjct: 850 ISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I GK Q + A+ ++ M +GI PD +NSL+ +G V A ++E +
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ +P+ TY+A I G+S N + Y + G + N+ TY L + S
Sbjct: 1061 LAG-LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPNQS 1113
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y ++A+ + + A + +M G+ P A N LI A C G V L +F +
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF-LE 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+S TY ISG G +D K + + + V TY SLI+G +++
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN 242
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R+ EEM S GI P++ +++GLC + + + ++ G + N
Sbjct: 243 VDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ C+ ++ E E L+ + P+ L+
Sbjct: 303 LITGLCKEQKIQEAVELLDRMNLQGLKPDAGLY 335
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V + +F M +G PDS + +LI G + A LF MV ++ P TY
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTY 230
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMM 241
+ I+G NVD ++ + G NV TY SL+ G K R +++ F E MM
Sbjct: 231 TSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMM 289
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P++ ++ GLC +K+ L + G K + + K++ +C + +
Sbjct: 290 ARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFR 349
Query: 302 ELEEQLETLTKCNQSPEVL 320
E L+ + +P L
Sbjct: 350 EAANFLDEMILGGITPNRL 368
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ + + A +FT M + P + SLI S +V A+ E M
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM- 253
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY + + G G + + +A G N+ TY +LI G K +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-------WKIN 283
+ M G+ P + KV+ G CA K +FL ++ GG W I+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 284 ENMAQKLVKCYC 295
+ ++V+ C
Sbjct: 374 VKTSNEVVRGLC 385
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGD 158
M +G + Y LI K Q + A+ + M QG+KPD+ ++ +I C S
Sbjct: 289 MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKF 348
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN------KWYAANIAAGFSV 212
A L E+++ PN T++ + + + N Y + + G SV
Sbjct: 349 REAANFLDEMILGG--ITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISV 406
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
V+T ESL+ K +F + +E+++ G IPS
Sbjct: 407 EVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPS 442
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ + + + A V M +G P+ V+N+LI + + +
Sbjct: 308 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 367
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MV S+ S TY+ I G+ G D + ++ GF+VN +
Sbjct: 368 GSLNKAIEIKDLMV-SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 426
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ S+I FDS RF EM+ + P +L ++ GLC K + L
Sbjct: 427 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 486
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ ++ + L+ CE G++DE
Sbjct: 487 NKGFVVDTRTSNALLHGLCEAGKLDE 512
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ PD +F + I A G V A+ LF M PN T++ I G G D
Sbjct: 243 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD 301
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + TY L+ G +A+ +EM G P++ + ++
Sbjct: 302 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 361
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ L++ ++ G + + L+K YC+ G+ D E L+ +
Sbjct: 362 DSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 415
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + F M ++ ++P++ V+N LI A SG + AL L E M
Sbjct: 602 YSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM- 660
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PNS TY + I G S + V+ + G NV Y +LI G K
Sbjct: 661 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 720
Query: 231 DSVDRFYEEMMSLGIIPS 248
V+ EM S + P+
Sbjct: 721 VKVECLLREMHSKNVHPN 738
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 38/292 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + +G D +N+LI C + A + MV KP++ TY I
Sbjct: 513 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 571
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ V+ +++ G +V TY +I G KA + F++EMMS +
Sbjct: 572 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 631
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + ++ C +L + + G N L+K + RV+E +
Sbjct: 632 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLL 691
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E + P V ++ +I Y ++ VE + M
Sbjct: 692 FEEMRMEGLEPNVF--HYTALIDGYGKLGQMVKVECLLREM------------------- 730
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
H K + + TY ++ GY R G + ++NEM+
Sbjct: 731 ---------------HSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEMR 766
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 13/259 (5%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI S +++ S KA + + + K L S Y LI K
Sbjct: 349 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQA 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 406 DNAERLLKEMLSIGFNVNQGSFTSVICL-LCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 464
Query: 185 FISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISG G + A+ W+ + GF V+ +T +L+HG +A D R +E++
Sbjct: 465 LISGLCKHGKHSKALELWFQF-LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 523
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G + ++ G C ++KLD FL ++ G K + L+ C L ++++
Sbjct: 524 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---CGLFNMNKV 580
Query: 304 EEQLETLTKCNQS---PEV 319
EE ++ C ++ P+V
Sbjct: 581 EEAIQFWDDCKRNGMLPDV 599
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A +F M +G++P+ +
Sbjct: 649 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 708
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 709 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 767
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 768 KGIVPDSITYKEFIYGYLK 786
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 2/227 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + Y+ LI + V A+ + + G+ PD ++ +I C
Sbjct: 552 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 611
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ F+ M+S + +PN+ Y+ I + G + + G S N
Sbjct: 612 AERTEEGQEFFDEMMS-KNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 670
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + +EEM G+ P++ +++G ++ +V+ L+ +
Sbjct: 671 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 730
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
N+ ++ Y G V E L + + P+ + +
Sbjct: 731 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 777
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
++F+++ +I ++ + A +L D M KG Y+ LI ++ AM
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILR---DAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF +G K ++N+L+ G V+ AL L + M+ P+ TY+ ++G
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNG 435
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+G + N IA G ++ T+ +LI G K R+ D + M+S GI P
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +L GLC RKLD V K +L G N L++ +C+ +V E E +
Sbjct: 496 VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555
Query: 309 TLTKCNQSPEVL 320
+ +P+++
Sbjct: 556 EMKTRGLTPDIV 567
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 2/221 (0%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
LD++ +++ L+ L +K V++ + KG + Y LI
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGL--CKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V AM +F M+ +G+ PD +LIC +G++ A LF + ++ +
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYS 601
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ ++ I+ F NV K + + + + TY +I K + D F
Sbjct: 602 TAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLL 661
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
E +S G++PS KVL LC +L + ++ G
Sbjct: 662 ENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNG 702
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 6/243 (2%)
Query: 97 LDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
D+MLK C D + LI + K NV + +F+ + +G+ P+ FN I
Sbjct: 204 FDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC 262
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + A L E +VS E P+ +Y+ I GF + + + +G N
Sbjct: 263 RKGAIDEAARLLESIVS-EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY ++I+G KA + D+ + M G IP ++ GLC ++R +
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G+K + + LVK + G V + + ++ + + SP++ + +G+ ++
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441
Query: 333 LSD 335
LSD
Sbjct: 442 LSD 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G PD FN+LI ++ A+ + + M+S P+ TY+ ++G +
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS-HGITPDVITYNTLLNGLCKARKL 512
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D + + A + G + N+ TY LI K R ++EM + G+ P I L +
Sbjct: 513 DNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572
Query: 256 LEGLCARRKLDR 267
+ GLC+ +LD+
Sbjct: 573 ICGLCSNGELDK 584
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 1/172 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + +M QG + ++ + ++I + A LF+ M+ + P+ T++ I
Sbjct: 165 ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLK-QGICPDILTFNKLI 223
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GNV K ++ + G N+ T+ I G + D R E ++S G+
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P + ++ G C KL + +L ++ G + NE ++ +C+ G
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAG 335
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 112/266 (42%), Gaps = 7/266 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+S+ S++ LI + S +A+ L ++ ++ NE +
Sbjct: 274 LESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCK 333
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYK 176
+G +QN A + +G PD ++SLI GD+ A+++F E M + +K
Sbjct: 334 AGMMQN---ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM--EKGFK 388
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ Y+ + G S G V + + G S ++ TY +++G K +
Sbjct: 389 HSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ ++ G IP I +++G C +R +D+ L +L G + L+ C+
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
++D + + + + + +P ++ +
Sbjct: 509 ARKLDNVVDTFKAMLEKGCTPNIITY 534
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 4/202 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKVQ A++VF M+ +P +N+++ + G A ++ M Y P+
Sbjct: 90 GKVQE---AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY-PD 145
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + F G A + G N +Y ++I G K ++
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ GI P I K++ LC + + + ++ G N ++ C G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 299 RVDELEEQLETLTKCNQSPEVL 320
+DE LE++ +P+V+
Sbjct: 266 AIDEAARLLESIVSEGLTPDVI 287
>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 15/245 (6%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQ--- 122
N S +WD L + ++ L W++ L+ G++ + +Y +I KV
Sbjct: 233 NQSGMAWDLL----EEMHRQEGNLGKGWKVLLELRNFGSKPDVVDYTTVINSLCKVSLLK 288
Query: 123 -----NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+V A +F M +G+KPD V+N L+ A G + A L ++M S+ P
Sbjct: 289 EATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLDMMRSTN-VTP 347
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ I+G G + I GFSV+V TY ++IHG +F+ +
Sbjct: 348 DVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNIIHGYSTRGNFEEAFLLW 407
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M + P + +L G C +++D + +L G K + + L+ +C +
Sbjct: 408 YHMAENCVTPDVVTCSALLSGYCREKRMDEANALFCKMLDIGLKPDLILYNTLIHGFCSV 467
Query: 298 GRVDE 302
G VDE
Sbjct: 468 GNVDE 472
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 34/194 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------------- 157
Y L+ GK + A + M + + PD +N+LI + G
Sbjct: 317 YNILMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELI 376
Query: 158 ------DVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVD 196
DVVT ++ + ++ P+ T A +SG+ +D
Sbjct: 377 RRGFSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTPDVVTCSALLSGYCREKRMD 436
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
N + + G ++ Y +LIHG + D ++M+ IIP+ ++
Sbjct: 437 EANALFCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALV 496
Query: 257 EGLCARRKLDRVKS 270
G +R D ++S
Sbjct: 497 LGFQKKRVTDPIQS 510
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 3/308 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V M+ +G+K + ++ +I + D A ++FE MV
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E KP+ Y+ IS F +GN+D + +T+ +IHG K+ D
Sbjct: 547 -KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDM 605
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G +P++ ++ GL +R++++ L + G NE+ K+
Sbjct: 606 RRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 665
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ Y +G + E L N+ +V + + +++ S R+ M +
Sbjct: 666 MQGYASVGDTGKAFEYFTRLQ--NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 723
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
+ S ++ R ++ DL K K TY ++ +AG +
Sbjct: 724 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783
Query: 411 DSVINEMK 418
I EM+
Sbjct: 784 TQTIEEME 791
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 707 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 762
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 763 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 822
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++GI P + +L L +R + V + K ++ G ++ A
Sbjct: 823 EEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 882
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
KC C++ EL E L+ + S H F
Sbjct: 883 KCLCKIEASGGELTETLQKTFPPDWSSHHHHHGF 916
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+ ALS M
Sbjct: 311 EFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 370
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GFS G+ +A + W+ ++N Y +I+ + +
Sbjct: 371 -KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + EM GI I I +++G
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMDG 458
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 4/257 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM K G + + LI+ + A+ ++ M A G+ P + +N+LI
Sbjct: 330 LGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCV 389
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G TA ++F+ M+S P+++TY+ I F +G++ + + AG S NV
Sbjct: 390 EGRFETAFTIFKWMLSHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI+G K + ++ R E M G+ P +++ G KL+ S +
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ G N ++ Y L +VD+ + + P ++ +I ++ ++
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS--QTYNVMISGFSKTN 566
Query: 336 RLDDVEYSVGRMGKQGL 352
+ + E G+M KQGL
Sbjct: 567 SISEAENFCGKMVKQGL 583
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 6/259 (2%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
DKMLK G+ + Y LI K N+ AM + M+ G+KPD+ + LI
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A SLF M+ PN TY A I G+ +L VD + + +G + Q
Sbjct: 495 GGKLEHATSLFYGMME-HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I G K + F +M+ G++P++ ++GLC + +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613
Query: 276 LGGGWKINENMAQKLVKCYCELGRVD--ELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ N L+ C+ GR + E+ L LT P V ++ +++
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNV--DTYTTLVKGLCG 671
Query: 334 SDRLDDVEYSVGRMGKQGL 352
R + + V M K+GL
Sbjct: 672 EGRCYEADQLVVSMQKKGL 690
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 5/292 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N+ A +F M G P+S +++LI G + A+ + E MV
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P TY + G + G N+QT+ +LI G + F
Sbjct: 300 Q-KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKF 358
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y +M++ G++P+ ++ LC + + + K++L G + ++
Sbjct: 359 EIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEI 418
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+KC+C +G + + + + K SP V+ ++ +I Y L++ + M
Sbjct: 419 IKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT--YNTLIYGYCKQGNLNNAMRLLEIMKGN 476
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGY 401
GL + E+ I + R + LF ++ TY ++ GY
Sbjct: 477 GLKPDAWTYTEL-ISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ L+ GK V A ++ M GI+P FN++I LC V L +
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMI-NILCKKGRVQEAKLIMSHI 228
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY + I G N+D + + G N TY +LI+G
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ EEM+ GI P++ L LC
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 3/178 (1%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYD 183
A +F ME + P+ ++SLI LC ++ ++ Y +PN TY
Sbjct: 605 LAFKIFHEMEKRNYFPNLYTYSSLIYG-LCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G G ++ + G + + Y +L+ G K +S + M +L
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G + + ++ LC ++ + + +L W +E + L+ + G D
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETD 781
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M A G+ PD +++LI +G V AL + ++M+ E +PN+ TY +
Sbjct: 152 AYEVVRWMAANGVAPDVVTYSTLISGLCSAGRVAEALGVLDLMLE-EGCQPNAHTYTPIL 210
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G + +AAGF+ + TY L+ KA F+ VD+ EE + G
Sbjct: 211 HAYCTSGMIHEAKDLLETMVAAGFAPSTATYNVLVEALCKACAFEEVDKLLEESSAKGWT 270
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
P ++GLC ++D+ + + +L G + NE
Sbjct: 271 PDTITYSTYMDGLCKNGRVDKSLALVDKMLSVGLRPNE 308
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M +GI P+S F S++ LC G + AL L SEE+ N TY+ I
Sbjct: 365 LFVDMVKKGIAPNSWTF-SIVIHSLCKLGKLHEALCLL----GSEEFVANVVTYNTLIRH 419
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ LG I G + N TY LI K F + + G+ S
Sbjct: 420 LNFLGKSCEAYLLLHEMIEKGIAPNDITYSLLIDCLCKEGKFLVALSCLNQCIEGGL--S 477
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ +L GL A KL +++ + ++LG G+ I+ M Q+L+ +C+ G LE
Sbjct: 478 KAAVSSILRGLIAGGKLRELQALIGWILGQGFIIDVYMYQELIISFCKKGYCRGLE 533
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G PD+ +++ + +G V +L+L + M+S +PN T + + G
Sbjct: 266 AKGWTPDTITYSTYMDGLCKNGRVDKSLALVDKMLSVG-LRPNEITLNILLDGVCRRSTA 324
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A + G+ VNV Y +++ R + +V + + +M+ GI P+ V
Sbjct: 325 WAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRWLAVVKLFVDMVKKGIAPNSWTFSIV 384
Query: 256 LEGLCARRKLDRVKSFL 272
+ LC KL L
Sbjct: 385 IHSLCKLGKLHEALCLL 401
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
A +V V Y +H FD+ M + G+ P + ++ GLC+ ++
Sbjct: 133 AACTVLVGVYACRLHW------FDAAYEVVRWMAANGVAPDVVTYSTLISGLCSAGRVAE 186
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
L +L G + N + ++ YC G + E ++ LET+ +P
Sbjct: 187 ALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMVAAGFAP 236
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 5/278 (1%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
LI ++ K +L DK K G L Y CLI +V A +F M
Sbjct: 755 LIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDM 814
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
+ G PD+ FN L+ SG + L++ M+S KP++ TY+ IS + N
Sbjct: 815 KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMIS-RRCKPDAITYNIVISSLAKSNN 873
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+D ++ +++ F +TY LI G K + R +EEM G P+ I
Sbjct: 874 LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
++ G + K ++ G + + LV C C GRVDE L
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P+ + ++ II S R+++ M +G+
Sbjct: 994 LDPDFIA--YNRIINGLGKSQRMEEALALYNEMRNRGI 1029
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 6/203 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ AL+ +L + +VL ++ + G + + I + G+ + A +F
Sbjct: 229 TYSALMVALGKKRDSEMVMVLLKEMEDL--GLRPNVYTFTICIRVLGRAGKIDEAYEIFR 286
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G PD + LI A +G + A LF + + + +KP+ Y + F+
Sbjct: 287 RMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF-VKMKANGHKPDQVIYITLLDKFNDF 345
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++D ++++ A G+ +V T+ L+ KARDFD ++ M GI+P++
Sbjct: 346 GDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTY 405
Query: 253 EKVLEGLCARRKLDRVKSFLKFL 275
+ +C + R++ LK L
Sbjct: 406 NTL---ICGLLRAGRIEDALKLL 425
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 18/251 (7%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
++ MEA G PD F L+ + D A + F++M + PN TY+ I G
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVM-RKQGILPNLHTYNTLICGLL 413
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G ++ K + G TY I K+ + +E+M + GI+P+I
Sbjct: 414 RAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIV 473
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L L +L K+ L G + ++KCY ++G+VDE L +
Sbjct: 474 ACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533
Query: 311 TKCNQSPEVL--------LHFFSGIIRLYALSDRLDDVEYS---------VGRMGKQGLS 353
+ P+V+ L+ + + + DR+ D++ S + +GK+G
Sbjct: 534 IRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRV 593
Query: 354 FKSAEDVEMVI 364
K+ E E +I
Sbjct: 594 QKAIELFESMI 604
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV + AM +F M G KP+ A+FN LI GD TA LF+ MV
Sbjct: 896 YGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMV 955
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E +P+ K+Y + G VD ++ + G + Y +I+G K++
Sbjct: 956 N-EGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRM 1014
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ Y EM + GI+P +
Sbjct: 1015 EEALALYNEMRNRGIVPDL 1033
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I GK A+ F M+A+GI P+ N+ + + G + A ++F +
Sbjct: 440 YNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGL- 498
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+S TY+ + +S +G VD + I G +V SLI KA
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + ++ M + + P++ +L GL ++ + + ++ N L
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTL 618
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C+C+ V+ + +T + P+VL +
Sbjct: 619 LDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 1/165 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ KV V A+++ + M G +PD V NSLI + +G V A +F+ M
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM- 568
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P TY+ +SG G V + + + I S N ++ +L+ K +
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEV 628
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ + + +M + P + V+ GL K++ F L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+G+V A++ F +++ G+ PD +N +I S + AL+L+ M +
Sbjct: 973 LCLAGRVDE---ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRG 1028
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P+ TY++ + G V+ + Y AG +V TY +LI G + + +
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088
Query: 235 RFYEEMMSLGIIPSI 249
Y+ MM G P+I
Sbjct: 1089 TVYKNMMVDGCNPNI 1103
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 26/298 (8%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A+ +F+ M KPD +N++I + V A F + S P+
Sbjct: 624 KNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS--MHPDH 681
Query: 180 KTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T + G G + DA++ F VN +E L+ G+L + D F E
Sbjct: 682 VTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAE 741
Query: 239 EMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E++ GI L ++ LC +R+L + F KF G ++ L C +
Sbjct: 742 ELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLG------ISPTLASYNCLI 795
Query: 298 GRVDELE------EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
G + E+ + + + +P+ F+ ++ ++ S ++ + + + K+
Sbjct: 796 GELLEVHYTEKAWDLFKDMKNVGCAPDAFT--FNMLLAVHGKSGKITE----LFELYKEM 849
Query: 352 LSFKSAEDV---EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+S + D +VI S + D+ LD F D + ++ TY L+ G + G
Sbjct: 850 ISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I GK Q + A+ ++ M +GI PD +NSL+ +G V A ++E +
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ +P+ TY+A I G+S N + Y + G + N+ TY L + S
Sbjct: 1061 LAG-LEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPNQS 1113
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 5/209 (2%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+ KG + L Y LI + GK + A +F+ ++ +G+ PD VFN+LI
Sbjct: 414 LDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCA 473
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G++ A L + M + + P+ TY+ + G+ G V+ + G +
Sbjct: 474 NGNIDRAFQLLKEM-DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHI 532
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+Y +LI G K D R +EMM+ G P+I +++GLC ++ + + LK +
Sbjct: 533 SYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEM 592
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELE 304
+ G +++ +++ + VD+LE
Sbjct: 593 VSKGITPDDSTYLSIIEA---METVDDLE 618
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 117/286 (40%), Gaps = 5/286 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G+KP+ +N++I G A +F+ M + +P+ TY++FISG G
Sbjct: 242 METLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM-KDKGLEPDCYTYNSFISGLCKEG 300
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ + + G N TY +LI G D D + +EM+S GI+ S+
Sbjct: 301 RLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYN 360
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+ L ++ + +K + G + L+ YC G L+ +
Sbjct: 361 LFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGK 420
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
P ++ ++ +I + +R+ + + ++ ++GL +I +
Sbjct: 421 GIQPTLVT--YTSLIYVLGKRNRMKEADALFSKIQQEGL-LPDIIVFNALIDGHCANGNI 477
Query: 374 DRLDLFLDHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINEMK 418
DR L + L TY+ L+ GY R G + +++EMK
Sbjct: 478 DRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK 523
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/266 (18%), Positives = 107/266 (40%), Gaps = 37/266 (13%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
++A+++ + DK L+ + + + + G+++ A + M G+ P++ +
Sbjct: 268 QRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEE---ASGLICKMLEGGLVPNAVTY 324
Query: 147 NSLICACLCSGDVVTALSLFEIMVSS-----------------------------EEYK- 176
N+LI GD+ A + + M+S +E +
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384
Query: 177 ----PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P++ T++ I+G+ G+ + G + TY SLI+ K
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
D + ++ G++P I + +++G CA +DR LK + +E L++
Sbjct: 445 ADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504
Query: 293 CYCELGRVDELEEQLETLTKCNQSPE 318
YC G+V+E + L+ + + P+
Sbjct: 505 GYCREGKVEEARQLLDEMKRRGIKPD 530
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 14/264 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK----TY 182
A+ F ++ +G P+ N ++ L A L+ +E ++ N + T+
Sbjct: 165 ALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLY-----AEMFRMNIRSSLYTF 219
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+ G + ++ G NV TY ++IHG F ++ M
Sbjct: 220 NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD 279
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P + GLC +L+ + +L GG N L+ YC G +D+
Sbjct: 280 KGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDK 339
Query: 303 -LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ E ++K + V + F I + R+ D + + M ++G+ A
Sbjct: 340 AYAYRDEMISKGIMASLVTYNLF---IHALFMEGRMGDADNMIKEMREKGM-MPDAVTHN 395
Query: 362 MVICSYFRCAAYDRLDLFLDHIKG 385
++I Y RC R LD + G
Sbjct: 396 ILINGYCRCGDAKRAFGLLDEMVG 419
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A ++ M +G+ PD+ N LI C C GD A L + MV + +P TY +
Sbjct: 375 ADNMIKEMREKGMMPDAVTHNILINGYCRC-GDAKRAFGLLDEMVG-KGIQPTLVTYTSL 432
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I + + ++ G ++ + +LI G + D + +EM ++ +
Sbjct: 433 IYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKV 492
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+P +++G C K++ + L + G K + L+ Y + G
Sbjct: 493 LPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRG 545
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
++F+++ +I ++ + A +L D M KG Y+ LI ++ AM
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILR---DAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF +G K ++N+L+ G V+ AL L + M+ P+ TY+ ++G
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNG 435
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+G + N IA G ++ T+ +LI G K R+ D + M+S GI P
Sbjct: 436 LCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +L GLC RKLD V K +L G N L++ +C+ +V E E +
Sbjct: 496 VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555
Query: 309 TLTKCNQSPEVL 320
+ +P+++
Sbjct: 556 EMKTRGLTPDIV 567
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 2/221 (0%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
LD++ +++ L+ L +K V++ + KG + Y LI
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGL--CKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V AM +F M+ +G+ PD +LIC +G++ A LF + ++ +
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYS 601
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ ++ I+ F NV K + + + + TY +I K + D F
Sbjct: 602 TAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLL 661
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
E +S G++PS KVL LC +L + ++ G
Sbjct: 662 ENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNG 702
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 6/243 (2%)
Query: 97 LDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
D+MLK C D + LI + K NV + +F+ + +G+ P+ FN I
Sbjct: 204 FDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC 262
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + A L E +VS E P+ +Y+ I GF + + + +G N
Sbjct: 263 RKGAIDEAARLLESIVS-EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNE 321
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY ++I+G KA + D+ + M G IP ++ GLC ++R +
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE 381
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G+K + + LVK + G V + + ++ + + SP++ + +G+ ++
Sbjct: 382 AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGC 441
Query: 333 LSD 335
LSD
Sbjct: 442 LSD 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G PD FN+LI ++ A+ + + M+S P+ TY+ ++G +
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS-HGITPDVITYNTLLNGLCKARKL 512
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D + + A + G + N+ TY LI K R ++EM + G+ P I L +
Sbjct: 513 DNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL 572
Query: 256 LEGLCARRKLDR 267
+ GLC+ +LD+
Sbjct: 573 ICGLCSNGELDK 584
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + +M QG + ++ + ++I + A LF+ M+ + P+ T++ I
Sbjct: 165 ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLK-QGICPDILTFNKLI 223
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GNV K ++ + G N+ T+ I G + D R E ++S G+
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G C KL + +L ++ G + NE ++ +C+ G + ++
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343
Query: 307 L 307
L
Sbjct: 344 L 344
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 112/266 (42%), Gaps = 7/266 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+S+ S++ LI + S +A+ L ++ ++ NE +
Sbjct: 274 LESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCK 333
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYK 176
+G +QN A + +G PD ++SLI GD+ A+++F E M + +K
Sbjct: 334 AGMMQN---ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM--EKGFK 388
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ Y+ + G S G V + + G S ++ TY +++G K +
Sbjct: 389 HSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ ++ G IP I +++G C +R +D+ L +L G + L+ C+
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
++D + + + + + +P ++ +
Sbjct: 509 ARKLDNVVDTFKAMLEKGCTPNIITY 534
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 6/234 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKVQ A++VF M+ +P +N+++ + G A ++ M Y P+
Sbjct: 90 GKVQE---AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY-PD 145
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + F G A + G N +Y ++I G K ++
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ GI P I K++ LC + + + ++ G N ++ C G
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+DE LE++ +P+V+ ++ +I + +L + E + +M G+
Sbjct: 266 AIDEAARLLESIVSEGLTPDVI--SYNTLICGFCKHSKLVEAECYLHKMVNSGV 317
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 4/257 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM K G + + LI+ + A+ ++ M A G+ P + +N+LI
Sbjct: 330 LGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCV 389
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G TA ++F+ M+S P+++TY+ I F +G++ + + AG S NV
Sbjct: 390 EGRFETAFTIFKWMLSHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVI 448
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI+G K + ++ R E M G+ P +++ G KL+ S +
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ G N ++ Y L +VD+ + + P ++ +I ++ ++
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS--QTYNVMISGFSKTN 566
Query: 336 RLDDVEYSVGRMGKQGL 352
+ + E G+M KQGL
Sbjct: 567 SISEAENFCGKMVKQGL 583
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 6/259 (2%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
DKMLK G+ + Y LI K N+ AM + M+ G+KPD+ + LI
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A SLF M+ PN TY A I G+ +L VD + + +G + Q
Sbjct: 495 GGKLEHATSLFYGMME-HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I G K + F +M+ G++P++ ++GLC + +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613
Query: 276 LGGGWKINENMAQKLVKCYCELGRVD--ELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ N L+ C+ GR + E+ L LT P V ++ +++
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNV--DTYTTLVKGLCG 671
Query: 334 SDRLDDVEYSVGRMGKQGL 352
R + + V M K+GL
Sbjct: 672 EGRCYEADQLVVSMQKKGL 690
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 5/292 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N+ A +F M G P+S +++LI G + A+ + E MV
Sbjct: 240 YTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P TY + G + G N+QT+ +LI G + F
Sbjct: 300 Q-KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKF 358
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y +M++ G++P+ ++ LC + + + K++L G + ++
Sbjct: 359 EIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEI 418
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+KC+C +G + + + + K SP V+ ++ +I Y L++ + M
Sbjct: 419 IKCFCLMGDIQKAMVIFDKMLKAGSSPNVIT--YNTLIYGYCKQGNLNNAMRLLEIMKGN 476
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGY 401
GL + E+ I + R + LF ++ TY ++ GY
Sbjct: 477 GLKPDAWTYTEL-ISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ L+ GK V A ++ M GI+P FN++I LC V L +
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMI-NILCKKGRVQEAKLIMSHI 228
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY + I G N+D + + G N TY +LI+G
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ EEM+ GI P++ L LC
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 3/161 (1%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYD 183
A +F ME + P+ ++SLI LC ++ ++ Y +PN TY
Sbjct: 605 LAFKIFHEMEKRNYFPNLYTYSSLIYG-LCQEGRAEDAEMYNLLARLTHYGCEPNVDTYT 663
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G G ++ + G + + Y +L+ G K +S + M +L
Sbjct: 664 TLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
G + + ++ LC ++ + + +L W +E
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDE 764
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
GK++N A+ +F ME GI P+ +N +I +G + A L E M + + +P
Sbjct: 256 GGKMEN---AIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM-TVKGVQP 311
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N KTY A I+G L D +N I +GF+ NV + +LI G K + + +
Sbjct: 312 NLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIK 371
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M+S I P+ L +++G C +++ ++ L+ +L G I+ + +V C+
Sbjct: 372 DVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCK 430
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 16/245 (6%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+A I GF + G V+ + G ++ TY L+ G D + ++E
Sbjct: 525 TYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 584
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G+I +I ++EG C +++ V++ LL ++N + ++K +C+ G V
Sbjct: 585 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNV 644
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
+ LE + P +S +I ++D ++ + M K+G V
Sbjct: 645 AAALQLLENMKSKGILPNCAT--YSSLIHGVCNIGLVEDAKHLIDEMRKEGF-------V 695
Query: 361 EMVICSYFRCAAYDRL-------DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
V+C Y +L +L+ I + + TY ++ GY + G K +++
Sbjct: 696 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 755
Query: 414 INEMK 418
+ +MK
Sbjct: 756 LIKMK 760
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + NV A+ + +M+++GI P+ A ++SLI G V A L + M
Sbjct: 631 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEM- 689
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN Y A I G+ LG +D + I+ N TY +I G K +
Sbjct: 690 RKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNM 749
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + +M GI+P + + G C +D
Sbjct: 750 EKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 786
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 113/256 (44%), Gaps = 8/256 (3%)
Query: 118 SGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
S + +N+ F A+ VF + +G P N L+ + + + + +F +M SE
Sbjct: 182 STQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVM--SEGA 239
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ ++ I+ G ++ + + G S NV TY +I+G + D+
Sbjct: 240 CPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFE 299
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
E+M G+ P++ ++ GL D+V L ++G G+ N + L+ YC
Sbjct: 300 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYC 359
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
++G ++ + + + N +P + + +++ + SD+++ E ++ + GLS
Sbjct: 360 KMGNIEGALKIKDVMISKNITPTSVTLY--SLMQGFCKSDQIEHAENALEEILSSGLSIH 417
Query: 356 SAEDVEMV--ICSYFR 369
+V +C FR
Sbjct: 418 PDNCYSVVHWLCKKFR 433
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 109/282 (38%), Gaps = 38/282 (13%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
E + +KG + L Y LI K+ HV M G P+ VFN+LI
Sbjct: 298 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDG 357
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++ AL + ++M+S + P S T + + GF ++ +++G S+
Sbjct: 358 YCKMGNIEGALKIKDVMIS-KNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSI 416
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS------------------------ 248
+ S++H K + S RF + M+S PS
Sbjct: 417 HPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW 476
Query: 249 IPILEK-----------VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+LEK ++ GLC KL +K +L G ++ L+ +C
Sbjct: 477 FRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNE 536
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
G+V+ E +TK P++ + F ++R +LDD
Sbjct: 537 GKVEGCFRLREEMTKRGIQPDIYTYNF--LLRGLCNVGKLDD 576
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + V A H+ M +G P+ + +LI G + TA S + M+
Sbjct: 666 YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI 725
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY I G+ LGN++ N +G +V TY L +G KA D
Sbjct: 726 SFNIH-PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDM 784
Query: 231 DSVDRFYEEMMSLGI 245
D+ + ++M + G+
Sbjct: 785 DNAFKVCDQMATEGL 799
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/266 (18%), Positives = 105/266 (39%), Gaps = 28/266 (10%)
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
F M+ S ++P+ + G G +++A W+ + G + T +LIHG
Sbjct: 440 FTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRL-LEKGSPASKVTSNALIHGL 498
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
A R +EM+ G+ ++ G C K++ G +++ E
Sbjct: 499 CGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVE-----------GCFRLRE 547
Query: 285 NMAQK-----------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
M ++ L++ C +G++D+ + + + H + ++ Y
Sbjct: 548 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNI--HTYGIMMEGYCK 605
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR-A 392
++R++DVE + + + S ++I ++ + L+++K L A
Sbjct: 606 ANRIEDVENLFNELLSKKMELNSIV-YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 664
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G GL +I+EM+
Sbjct: 665 TYSSLIHGVCNIGLVEDAKHLIDEMR 690
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 2/204 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V A +F++M ++ PD ++ LI ++ A L++ M+ PN
Sbjct: 458 KAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN-CVPN 516
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+AF++G G + Y +AAG S +V TY +LIHG AR D +E
Sbjct: 517 VTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFE 576
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+S G P+ +L GLC K D + ++ G + L+ +C +G
Sbjct: 577 TMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVG 636
Query: 299 RVDELEEQLETLTKCNQSPEVLLH 322
++++ E + + P+V+ +
Sbjct: 637 KIEQAVEVFDEMVSKGHDPDVVAY 660
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V+ M A G PD +++LI + A LFE M+S +PN+ TY+ +
Sbjct: 536 AQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMIS-RGCRPNAVTYNCLL 594
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G D ++ + + G + TY +L++G + ++EM+S G
Sbjct: 595 HGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD 654
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+G K K + ++ K + ++ + R+D+ E
Sbjct: 655 PDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEV 714
Query: 307 LETLTK 312
E + +
Sbjct: 715 FERMEQ 720
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++ A+ VF M ++G PD +N L+ +G A LF++MV S + KP+
Sbjct: 636 GKIEQ---AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMV-SRQCKPD 691
Query: 179 SKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +++ I G S + DA+ + G S ++ TY SLI G + + +
Sbjct: 692 TVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 751
Query: 238 EEMMSLGIIPSIPILEKVLEGL 259
+E+ L + P +LE +
Sbjct: 752 KEIDRLKLSPDPHAFNVLLEAI 773
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 2/164 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CL+ K A +F M +G PD + +L+ G + A+ +F+ MV
Sbjct: 590 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMV 649
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + P+ Y+ + GF G + + ++ + ++ +I G KA+
Sbjct: 650 S-KGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRL 708
Query: 231 DSVDRFYEEM-MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
D +E M G P + ++ GLC ++L K
Sbjct: 709 DDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFK 752
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 166 FEIMVSSEEYKPNSK-TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E++V + K + + T A I G +W A F +V TY L+
Sbjct: 83 LEVVVKKWDGKSSCRETVGAVIKHLRDGGEALTFFRWLQAR---NFKHDVFTYNCLLDKL 139
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++ RD + +E+M++ G++P+ +++ C R D F ++ G+K +
Sbjct: 140 IRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSS 199
Query: 285 NMAQKLVKCYCELGRVDEL 303
+ QK+ +C G+ E
Sbjct: 200 TLYQKVTECLKATGKEGEF 218
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 5/232 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CL+ + +++ A VF M AQG+ P+ + L+ + + A+ F MV
Sbjct: 132 YNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMV 191
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +KP+S Y + G ++ + ++ +V + ++L+ +
Sbjct: 192 -DKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKA 250
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQK 289
+ + M+ G P I ++ C LD K FL+ + +N
Sbjct: 251 IEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTA 310
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ C+ G++++ E T+ + S + + + +IRL S R+D E
Sbjct: 311 FLSGLCKSGKIEQAFEACRTMQESLSSSQPV---YDMLIRLLIESGRIDKAE 359
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 86/215 (40%), Gaps = 38/215 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F +M G KPD+ +++ ++ A ++ A LF M + N+ + AF+
Sbjct: 253 ASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFL 312
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG G ++ Q +E+ R +E +S
Sbjct: 313 SGLCKSGKIE------------------QAFEAC--------------RTMQESLS---- 336
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
S P+ + ++ L ++D+ + + G + + +++ C+ GRVD
Sbjct: 337 SSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSL 396
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
LET+ K P++ H S +I +D++ + +
Sbjct: 397 LETMIKRGYCPDMATH--SMLINELCKADKIQEAQ 429
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K+ + AM V +M G+ PD +NSLI G++ A+ + + MV
Sbjct: 311 YNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMV 370
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN+ TY+A IS VD + + G +V T+ SLI G + +
Sbjct: 371 S-RDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNH 429
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
S +EEM G P +++ LC+ RKL+ + LK + G N + L
Sbjct: 430 KSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ R++E EE + + S + + ++ +I S R++D + +M +
Sbjct: 490 IDGFCKNKRIEEAEEIFDEMELQGVSRDSVT--YNTLIDGLCKSKRVEDAAQLMDQMIME 547
Query: 351 GL 352
GL
Sbjct: 548 GL 549
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ K V A + + ++GI PD FNSLI S + +A+ LFE M
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM- 439
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY+ I S ++ G + NV Y +LI G K +
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI 499
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + ++EM G+ +++GLC ++++ + ++ G + ++ L
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C+ G + + + ++T+T +P+++ +
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTY 591
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 7/226 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K V A+ + M + G+ PD F +++ + G++ AL + E MV
Sbjct: 206 FNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMV 265
Query: 171 SSEEYK-PNSK-TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
EY P + T + I+GF G +D + ++ GF + TY +L++G K
Sbjct: 266 ---EYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIG 322
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ M+ G+ P I ++ GLC +++ L ++ N
Sbjct: 323 HAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYN 382
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ C+ RVDE E LT P+V F+ +I+ LS
Sbjct: 383 AIISSLCKENRVDEATEIARLLTSKGILPDVCT--FNSLIQGLCLS 426
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 3/208 (1%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+SM + I+ D + FN LI A + V A+ + E M S P+ T+ + G+
Sbjct: 192 SSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEM-PSYGLSPDETTFTTIMQGYIE 250
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
GN+D + + G T LI+G K D F +E +S G P
Sbjct: 251 GGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFT 310
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC + +L GG + L+ C+LG ++E + L+ +
Sbjct: 311 YNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMV 370
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ SP + ++ II +R+D+
Sbjct: 371 SRDCSPNAVT--YNAIISSLCKENRVDE 396
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 109 DEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE + G ++ N+ A+ + M G N LI G + ALS
Sbjct: 237 DETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFI 296
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ VS E ++P+ TY+ ++G +G+ + A + G ++ TY SLI G K
Sbjct: 297 QEAVS-EGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCK 355
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ + + ++M+S P+ ++ LC ++D + L G
Sbjct: 356 LGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V A + M +G++PD +NSL+ +GD+ A + + M
Sbjct: 521 YNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMT 580
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+ TY ISG G V ++ + G + Y +I K
Sbjct: 581 SSG-CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRT 639
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
R + EM+ P + V GLC
Sbjct: 640 HEAMRLFREMLDKSEPPDAITYKIVYRGLC 669
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM +F M+ +G +PD +N LI + S + AL+L + M + + N Y+ I
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCAR-NVVIYNTLI 490
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF ++ + + G S + TY +LI G K++ + + ++M+ G+
Sbjct: 491 DGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLR 550
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
P +L C + + ++ + G + L+ C+ GRV
Sbjct: 551 PDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRV 604
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 98/252 (38%), Gaps = 7/252 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHV 130
++++LI L SS K+ + L + +KG DE Y LI + + A+++
Sbjct: 415 TFNSLIQGLCLSSNHKSAM----DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNL 470
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
ME G + ++N+LI + + A +F+ M + +S TY+ I G
Sbjct: 471 LKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM-ELQGVSRDSVTYNTLIDGLC 529
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
V+ + I G + TY SL+ K D + M S G P I
Sbjct: 530 KSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIV 589
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GLC ++ L+ + G + + +++ + R E +
Sbjct: 590 TYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM 649
Query: 311 TKCNQSPEVLLH 322
++ P+ + +
Sbjct: 650 LDKSEPPDAITY 661
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/184 (17%), Positives = 70/184 (38%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK + + V M+ G + D +F + + + + ++M KP+
Sbjct: 108 GKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPD 167
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ Y+ ++ + + +++ + +V T+ LI KA E
Sbjct: 168 TRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMME 227
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM S G+ P +++G LD + ++ G + L+ +C+ G
Sbjct: 228 EMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQG 287
Query: 299 RVDE 302
R+D+
Sbjct: 288 RIDQ 291
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y ++A+ + + A + +M G+ P A N LI A C G V L +F M
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEM 183
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
P+S TY ISG G +D K + + + V TY SLI+G +++
Sbjct: 184 -PKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN 242
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R+ EEM GI P++ +++GLC + + + ++ G + N
Sbjct: 243 VDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ C+ ++ E E L+ + P+ L+
Sbjct: 303 LITGLCKEQKIQEAVELLDRMNLQGLKPDAGLY 335
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGD 158
M +G + Y LI K Q + A+ + M QG+KPD+ ++ +I C S
Sbjct: 289 MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKF 348
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN------KWYAANIAAGFSV 212
A L E+++ PN T++ + + + N Y + + G SV
Sbjct: 349 REAANFLDEMILGG--ITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISV 406
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
V+T +SL+ K +F + +E+++ G IP+
Sbjct: 407 EVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPN 442
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 13/316 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + + A+ M +GIKPD+ ++N ++ V A LFE MV
Sbjct: 117 YGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMV 176
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY+ I+G ++ + + G+ +Y +LI G K +D
Sbjct: 177 K-QRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 235
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +++M+ +P++ +++GL K+ L ++ G N L
Sbjct: 236 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 295
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C++ RVDE + LE + +P V+ ++ ++ +D+L+D + + R
Sbjct: 296 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVT--YNILLNSLCRADKLEDA-FKLFR---- 348
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR-LD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G++ + + + R + + LD L+ + I TYD L G RAG
Sbjct: 349 GMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAG 408
Query: 406 LSGKLDSVINEMKFAE 421
+ ++ +MK +
Sbjct: 409 KVHEAQELMEKMKLTK 424
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 7/170 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ LI L S K Q E LD M+K G + Y+CLI KV+ V A +
Sbjct: 256 TYTTLIDGLSKSG--KVQAAAEV-LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLL 312
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M QGI P +N L+ + LC D + A LF M + P TY+ +
Sbjct: 313 EQMVTQGIAPTVVTYNILLNS-LCRADKLEDAFKLFRGM-AQRRCHPTVVTYNTLLRALC 370
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+D ++ YA IA G + TY++L G +A E+M
Sbjct: 371 HHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 38/177 (21%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P + T++ GF+ G ++ + + Y + AG+++ Y LI K +FD +
Sbjct: 8 PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M R+K F + + IN C+
Sbjct: 68 LHTM--------------------------RLKRFKRKAIAYSTIIN---------WLCK 92
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L RV+E E +E + + P+ L + I+ + R+DD +V M +G+
Sbjct: 93 LNRVEEARELIEKMAR-YAPPDALT--YGPIVERLCKTKRIDDALATVEEMATRGIK 146
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ CLI+ K +P A+ +F M +G KPD FNSLI LC D + AL L M
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG-LCEVDEIKHALWLLRDM 520
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+S E N+ TY+ I+ F G + K + G ++ TY SLI G +A +
Sbjct: 521 IS-EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +E+M+ G PS ++ GLC ++ F K ++ G +
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 290 LVKCYCELGRVDE 302
L+ C GR+++
Sbjct: 640 LINGLCRAGRIED 652
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 3/249 (1%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L LE D KG + + Y L+ K+ + A +V M A G+KP++ FN LI
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
A + A+ +F M + KP+ T+++ ISG + + I+ G
Sbjct: 467 SAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N TY +LI+ L+ + + EM+ G +++GLC ++D+ +S
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ +L G + L+ C G V+E E + + +P+++ F+ +I
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT--FNSLING 643
Query: 331 YALSDRLDD 339
+ R++D
Sbjct: 644 LCRAGRIED 652
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S + P T+ + F ++ +D+ G N Y++LIH K +
Sbjct: 210 SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 269
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ EEM +G +P V+ GLC +++ + +L G+ ++ L+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM 329
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C++GRVD ++ + K PE+++ F+ +I + RLDD + + M
Sbjct: 330 NGLCKIGRVDAAKDLFYRIPK----PEIVI--FNTLIHGFVTHGRLDDAKAVLSDMVT-- 381
Query: 352 LSFKSAEDV---EMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
S+ DV +I Y++ L++ D K +Y LV G+ + G
Sbjct: 382 -SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440
Query: 408 GKLDSVINEM 417
+ +V+NEM
Sbjct: 441 DEAYNVLNEM 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 114/314 (36%), Gaps = 16/314 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ + M G PD+ FN +I LC D + + +
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRM 313
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY ++G +G VDA + + + +LIHG +
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP----EIVIFNTLIHGFVTHGRL 369
Query: 231 DSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M+ S GI+P + ++ G + L + G K N
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV +C+LG++DE L ++ P + F+ +I + R+ + M +
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTV--GFNCLISAFCKEHRIPEAVEIFREMPR 487
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+G DV D + L D I TY+ L+ + R G
Sbjct: 488 KG----CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 543
Query: 406 LSGKLDSVINEMKF 419
+ ++NEM F
Sbjct: 544 EIKEARKLVNEMVF 557
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 8/299 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A + M +G PD + L+ G V A LF + KP
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPEI 353
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ I GF + G +D + + + G +V TY SLI+G K
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M + G P++ +++G C K+D + L + G K N L+ +C+
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ E E + + P+V + F+ +I D + + + M +G+ +
Sbjct: 474 RIPEAVEIFREMPRKGCKPDV--YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ R + L + + L TY+ L+ G RAG K S+ +M
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ V M +G KP+ + L+ G + A ++ M S++ KPN+ ++
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM-SADGLKPNTVGFN 463
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
IS F + + + G +V T+ SLI G + + +M+S
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 523
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G++ + ++ R ++ + + ++ G ++E L+K C G VD+
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Query: 304 EEQLETLTKCNQSP 317
E + + +P
Sbjct: 584 RSLFEKMLRDGHAP 597
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 12/199 (6%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKV 121
D++ FNS LI+ L K L W L M+ +G + Y LI +
Sbjct: 493 DVYTFNS-------LISGLCEVDEIKHAL---WLLRDMISEGVVANTVTYNTLINAFLRR 542
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+ A + M QG D +NSLI +G+V A SLFE M+ + + P++ +
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR-DGHAPSNIS 601
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I+G G V+ ++ + G + ++ T+ SLI+G +A + + ++
Sbjct: 602 CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
Query: 242 SLGIIPSIPILEKVLEGLC 260
+ GI P ++ LC
Sbjct: 662 AEGIPPDTVTFNTLMSWLC 680
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S S + LI L S + +E++ + +L+G+ + + LI + + +
Sbjct: 598 SNISCNILINGLCRSG--MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++A+GI PD+ FN+L+ + LC G V L + + PN +T+ +
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLM-SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Query: 190 SSLGNVDAMNKWYAA 204
+D + AA
Sbjct: 715 IPQETLDRRRFYNAA 729
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K Q V A+ + + + +KPD + +L+C + L + + M+
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEML 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ + + G G V+ G S N+ Y +LI K R+F
Sbjct: 325 RLR-FSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNF 383
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + ++ M +G+ P+ +++ C R KLD SFL ++ G K + L
Sbjct: 384 DEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSL 443
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ G + E + + P V+ ++ ++ Y +++ M +
Sbjct: 444 INGHCKFGDISAAESLMAEMINKKLEPTVVT--YTSLMGGYCSKGKINKALRLYHEMTGK 501
Query: 351 GLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
G+ S ++ FR D + LF + + + K R TY+ ++ GY G K
Sbjct: 502 GI-VPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSK 560
Query: 410 LDSVINEM 417
+NEM
Sbjct: 561 AFEFLNEM 568
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 42/275 (15%)
Query: 65 FAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIALSGKVQ 122
F + + F ++ALI SL + + +A+L+ + R+ K+ L N+ Y+ LI + +
Sbjct: 361 FGVSPNIFVYNALIDSLCKGRNFDEAELLFD-RMGKIGLCPNDV---TYSILIDMFCRRG 416
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ M G+KP +NSLI GD+ A SL M++ ++ +P TY
Sbjct: 417 KLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMIN-KKLEPTVVTY 475
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-DSVDRFYE--- 238
+ + G+ S G ++ + Y G ++ T+ +L+ G +A D+V F E
Sbjct: 476 TSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAE 535
Query: 239 -------------------------------EMMSLGIIPSIPILEKVLEGLCARRKLDR 267
EM+ GI+P ++ GLC +
Sbjct: 536 WNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASE 595
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
K F+ L G ++NE L+ +C G+++E
Sbjct: 596 AKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEE 630
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 39/248 (15%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D L+G + L Y LI S K ++ + + M +G+KPD ++ S+I A +G
Sbjct: 637 DMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTG 696
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM----NKWYAAN-------- 205
D A ++++M+ +E PN TY A I+G G V+ +K N
Sbjct: 697 DFKEAFGIWDLMI-NEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTY 755
Query: 206 -----------------------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G N TY LI G + + M+
Sbjct: 756 GCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIG 815
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC---ELGR 299
G+ P ++ LC R + + + G + + L+ C E+G+
Sbjct: 816 DGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
Query: 300 VDELEEQL 307
EL ++
Sbjct: 876 ATELRNEM 883
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ + +V A+ ++ SM +GI+PD +N+LI C +G++ A L M+
Sbjct: 825 YTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884
Query: 171 SSEEYKPNSKTYDAFISGFSS 191
+ KPN++T + IS SS
Sbjct: 885 -RQGLKPNTETSETTISNDSS 904
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V+T +L+HG +K R F +++M+++GI P + I V+ LC + L R K +
Sbjct: 192 VRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIV 251
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ G +N L+ C+ +V E
Sbjct: 252 QMEATGCDVNIVPYNVLIDGLCKKQKVWE 280
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 139 IKPDSAVFNSLICACLCS------GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++P ++V N + C GD+ A+ L ++ N+ TY+ I GF
Sbjct: 743 MRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKG--LLANTATYNMLIRGFCRQ 800
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G ++ ++ I G S + TY ++I + D + M GI P
Sbjct: 801 GRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ G C ++ + +L G K N ++ +
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 4/276 (1%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W K+ K G L Y+ +I+ K +V A + M G KP+ SLI
Sbjct: 887 WFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGL 946
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF ++ S+ YKPN TY A ISG+ + + G N
Sbjct: 947 CKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPN 1006
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY +LI G KA +F E M + G P+ +++GLC R + + L
Sbjct: 1007 TNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN 1066
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ + L+ C+ +++ L + K P++ H ++ +I +
Sbjct: 1067 TGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDI--HLYTTLIAAFCR 1124
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ + D E + K GL+ + E +IC Y R
Sbjct: 1125 QNMMKDSEKLFDEVIKLGLA-PTKETYTSMICGYCR 1159
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 106/241 (43%), Gaps = 4/241 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ + ++ + A+ + M QG+ + V N +I V A ++F+ M +
Sbjct: 766 CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 825
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
Y P+S TY I G+ GNV ++W + GF V+ T +I + +
Sbjct: 826 GVY-PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNR 884
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
F+ ++ +G+ P++ ++ GLC R + + L+ ++ GWK N L+
Sbjct: 885 AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIH 944
Query: 293 CYCELGRVDE-LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G + L+ + N P V H ++ +I Y ++L E RM +QG
Sbjct: 945 GLCKKGWTERAFRLFLKLIRSDNYKPNV--HTYTAMISGYCKEEKLSRAEMLFERMKEQG 1002
Query: 352 L 352
L
Sbjct: 1003 L 1003
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 2/184 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F + G+ P+ ++S+I G V A L E MV + +KPN T+ + I
Sbjct: 885 AVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG-WKPNVYTHTSLI 943
Query: 187 SGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + + + I + + NV TY ++I G K + +E M G+
Sbjct: 944 HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 1003
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P+ +++G C + ++ + G+ N +V C+ GR +E +
Sbjct: 1004 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFK 1063
Query: 306 QLET 309
L T
Sbjct: 1064 LLNT 1067
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 36/242 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ K + + A +F M+ QG+ P++ + +LI +G+ A L E+M
Sbjct: 975 YTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELM- 1033
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAA------------------ 208
S+E + PN+ TY++ + G G + +N + I A
Sbjct: 1034 SNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADM 1093
Query: 209 -------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
GF ++ Y +LI + ++ ++E++ LG+ P+ +
Sbjct: 1094 NQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSM 1153
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G C +K+ F + + G + L+ C+ R+DE + +T+
Sbjct: 1154 ICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL 1213
Query: 316 SP 317
SP
Sbjct: 1214 SP 1215
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 35/233 (15%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN-------------------------- 147
+I ++ +++ V +A +VF M A+G+ PDS +
Sbjct: 802 IILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERG 861
Query: 148 --------SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+LI C +V F V+ PN Y + ISG G+V
Sbjct: 862 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAF 921
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKVLEG 258
+ + G+ NV T+ SLIHG K + R + +++ S P++ ++ G
Sbjct: 922 ELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISG 981
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
C KL R + + + G N N L+ +C+ G + E +E ++
Sbjct: 982 YCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMS 1034
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 37/243 (15%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+++ E ++ L N + Y LI K N A + M +G P++ +N
Sbjct: 990 RAEMLFERMKEQGLVPN---TNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 1046
Query: 148 SLICACLCSGDVVTALSL---------------FEIMVSSE------------------- 173
S++ G A L + I++S +
Sbjct: 1047 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 1106
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
++P+ Y I+ F + K + I G + +TY S+I G + +
Sbjct: 1107 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 1166
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+F+++M G P ++ GLC +LD + ++ G E L
Sbjct: 1167 VKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYE 1226
Query: 294 YCE 296
YC+
Sbjct: 1227 YCK 1229
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 143/333 (42%), Gaps = 42/333 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-----------CACL----- 154
Y +I K ++ A +FT M+ G PD +NSLI C C+
Sbjct: 258 YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK 317
Query: 155 ---CSGDVVTALSL------FEIMVSSEEY---------KPNSKTYDAFISGFSSLGNVD 196
C DV+T +L FE M + E+ KPN TY FI F G +
Sbjct: 318 DADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 377
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
K++ + N TY SLI + KA + + EE++ GI ++ +L
Sbjct: 378 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+GLC ++ + + +L G N+ LV + + ++ ++ L+ + +
Sbjct: 438 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497
Query: 317 PEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AY 373
P++LL+ G I L+ L + RL++ + +G + + G++ +A ++ +YF+ A
Sbjct: 498 PDLLLY---GTI-LWGLCNESRLEEAKLLIGEIKESGIN-TNAVIYTTLMDAYFKSGQAT 552
Query: 374 DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+ L L + + TY L+ G ++GL
Sbjct: 553 EALTLLEEMLDLGLIATEVTYCALIDGLCKSGL 585
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 5/199 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV + F M A GIK +N +I GD+ A SLF M + + P+
Sbjct: 232 KVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDI 290
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY++ I G LG +D + A +V TY +LI+ K F E
Sbjct: 291 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 350
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + G+ P++ ++ C L F + NE L+ C+ G
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410
Query: 300 VDE----LEEQLETLTKCN 314
+ E +EE L+ K N
Sbjct: 411 LAEALKLVEEILQAGIKLN 429
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 37/211 (17%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
++ GI ++ ++ +L+ A SG AL+L E M+ TY A I G G
Sbjct: 526 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG-LIATEVTYCALIDGLCKSG 584
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP------ 247
V + G NV Y +L+ G K F+ + ++EM+ G++P
Sbjct: 585 LVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYT 644
Query: 248 --------------SIPILEKVLE---------------GLCARRKLDRVKSFLKFLLGG 278
++ + ++++E GL ++ + ++ L ++G
Sbjct: 645 ALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGK 704
Query: 279 GWKINENMAQKLVKCYCELGRVDE-LEEQLE 308
G +E + L+K Y LG+VDE LE Q E
Sbjct: 705 GVLPDEVVYMCLIKKYYALGKVDEALELQNE 735
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 1/182 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P VF++L A + G + A F M + P ++ +A + S +G D K
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFRVF-PKPRSCNALLHRLSKVGRGDLSRK 241
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
++ AAG +V TY +I K D + + +M G P I +++G
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
LD + + + L+ C+C+ R+ + E L + P V+
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361
Query: 321 LH 322
+
Sbjct: 362 TY 363
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 5/208 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ AL+ L + K+A+ V L+ + N+ + Y L+ K + + +A +
Sbjct: 432 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ---ETYTALVHGFIKAKEMEYAKDIL 488
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M+ + IKPD ++ +++ LC+ + L + N+ Y + +
Sbjct: 489 KEMKEKCIKPDLLLYGTILWG-LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFK 547
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G + G TY +LI G K+ + M +G+ P++ +
Sbjct: 548 SGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAV 607
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+++GLC + K +L G
Sbjct: 608 YTALVDGLCKNNCFEVAKKLFDEMLDKG 635
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 107/241 (44%), Gaps = 19/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD++ ++ +I + V A LFE M S P+ TY I
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM-KSNHVVPDVFTYTILI 522
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F +G + KW+ + G + NV TY +LIH LKAR S + +E M+S G I
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCI 582
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQK--------L 290
P++ +++G C ++++ + G +KI++ + L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ +V E + L+ ++ P ++ + +I + +LD+ + +M ++
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIV--YDALIDGFCKVGKLDEAQMVFTKMSER 700
Query: 351 G 351
G
Sbjct: 701 G 701
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ + +L+ + V A L ++M S E +PN YDA I GF +G +D
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G+ NV TY SLI K + D + M+ P++ I ++++GLC
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
K D + + G N ++ + + G+VD+ E + + +P +
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812
Query: 321 LH 322
+
Sbjct: 813 TY 814
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)
Query: 29 NTNTNSTSVSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSP 86
+ N ++ + L+ L + V + + LD + + + +DALI +
Sbjct: 628 DGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKL 687
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+AQ+V ++ N + Y+ LI K + + A+ V + M P+ ++
Sbjct: 688 DEAQMVFTKMSERGYGPN---VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIY 744
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
+I G A L +M + PN TY A I GF G VD +
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMM-EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
A G + N TY LI+ A D + +EM + KV+EG +
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF------N 857
Query: 267 RVKSFLKFLLGGGW--KINENMAQKLVKCY-------CELGRVDELEEQLETLTKCNQSP 317
R +F++ G +I EN+A ++ Y C+ GR++ E + ++ C
Sbjct: 858 R-----EFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYS 912
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+S +I +L+ ++D M K+G
Sbjct: 913 AADKDLYSSLIESLSLASKVDKAFELYADMIKRG 946
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 25/333 (7%)
Query: 90 QLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
Q +W D+M++ G + Y LI K + + A +F M ++G P+ + +
Sbjct: 532 QQARKW-FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLG 193
LI SG + A ++ M + + PN TY A + G
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V G N Y++LI G K D + +M G P++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ L ++LD L +L N + +++ C++G+ DE + + +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA- 372
P V+ ++ +I + + ++D + +MG +G + V + CAA
Sbjct: 771 GCHPNVVT--YTAMIDGFGKAGKVDKCLELMRQMGAKGC---APNFVTYRVLINHCCAAG 825
Query: 373 -YDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRR 403
D LD +K +Y + A Y ++ G+ R
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 7/202 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M + P+ + L+C CL + + +M++ Y P+ + +++ I
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLI 376
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD------RFYEEM 240
+ G+ K G Y LI G S+D + Y EM
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ ++ + + + LC K ++ S ++ ++ G+ + + K++ C +V
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496
Query: 301 DELEEQLETLTKCNQSPEVLLH 322
D E + + P+V +
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTY 518
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
+E + K D+ ++ +I LC + F + S PN TY + G
Sbjct: 290 IEKEEFKLDTVIYTQMISG-LCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKR 348
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + + I G + + + SLIH ++ D+ + ++M G P +
Sbjct: 349 QLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYN 408
Query: 254 KVLEGLCARRKLDRV-------KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G+C KL + K++ + +L +N+ L +C C G+ ++
Sbjct: 409 ILIGGICGNEKLPSLDVLELAEKAYGE-MLDAHVVLNKVNVSNLARCLCGAGKFEK 463
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 153/371 (41%), Gaps = 42/371 (11%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWR--LDKML-KGNESCLDEYACLIALSGKVQNVPFA 127
++++ L+ +L KA V E R D ML +G + Y L+ KV + A
Sbjct: 135 EYTYGFLVNAL-----GKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMA 189
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ +F M+ +G +P +N L+ A +G V A LF M + + P+S TY ++
Sbjct: 190 LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM-TGDGCSPDSYTYSTLVN 248
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G V+ +K + + G +V++ Y SL+ KA + D V + +EM G P
Sbjct: 249 GLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHP 308
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+++ L K D + ++ G K + L+ Y G + + L
Sbjct: 309 DAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQML 368
Query: 308 ETLTKCNQSPEV-----LLHF----------FSGIIRLYALSDRLDDVEYS--VGRMGKQ 350
E + + PE L+H+ F+ + + R D V Y+ + +GK+
Sbjct: 369 EEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR 428
Query: 351 GLSFKSA--------EDVEMVICSYF----RCAAYDRLD----LFLDHIKGSYKLRRATY 394
G + ++A + VE SY A DRLD LF D + +A Y
Sbjct: 429 GENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMY 488
Query: 395 DFLVAGYRRAG 405
L+ RAG
Sbjct: 489 RILIRAAHRAG 499
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 14/219 (6%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ LI S + +E + +KG+E Y L+ GK V A
Sbjct: 100 RFAYNVLIRYFGRSG--QLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSF 157
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F +M +G+ P+ +N L+ A G + AL LF M ++P+ TY+ +
Sbjct: 158 FDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM-KRRGFQPSVVTYNILLDALC 216
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
S G V A K + G S + TY +L++G K+ + + + EM+ G+ +
Sbjct: 217 SAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLV 276
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+L L +DRV WK+ + M++K
Sbjct: 277 NYNSLLATLAKAGNMDRV-----------WKLMKEMSRK 304
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 119/290 (41%), Gaps = 7/290 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFISG 188
V+ + +G + D +N LI SG + +A+ +F E+ + E P+ TY ++
Sbjct: 87 VYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSE--PDEYTYGFLVNA 144
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G V ++ A + G + N+ TY L+ K D + EM G PS
Sbjct: 145 LGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPS 204
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +L+ LC+ ++ + + G G + LV + GRV+E +
Sbjct: 205 VVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFR 264
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
+ ++ V L ++ ++ A + +D V + M ++G A ++ +
Sbjct: 265 EM--VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFH-PDAFSFNTIMDALG 321
Query: 369 RCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ D ++F ++ K +Y+ L+ Y R G + + ++ EM
Sbjct: 322 KANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEM 371
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 21/242 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A + M ++G PD++ ++ +I LC+ V A LFE M S P+ TY
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVI-GLLCNASKVDNAFLLFEEM-KSNHVVPDVFTYTIL 521
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F +G + KW+ + G + NV TY +LIH LKAR S + +E M+S G
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQK-------- 289
IP++ +++G C ++++ + G +KI++ +
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV C+ +V E + L+ ++ P ++ + +I + +LD+ + +M +
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIV--YDALIDGFCKVGKLDEAQMVFTKMSE 699
Query: 350 QG 351
+G
Sbjct: 700 RG 701
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ + +L+ + V A L ++M S E +PN YDA I GF +G +D
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G+ NV TY SLI K + D + M+ P++ I ++++GLC
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
K D + + G N ++ + + G+VD+ E + + +P
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAP 809
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)
Query: 29 NTNTNSTSVSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSP 86
+ N ++ + L+ L + V + + LD + + + +DALI +
Sbjct: 628 DGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKL 687
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+AQ+V ++ N + Y+ LI K + + A+ V + M P+ ++
Sbjct: 688 DEAQMVFTKMSERGYGPN---VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIY 744
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
+I G A L +M + PN TY A I GF G VD +
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMM-EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
A G + N TY LI+ A D + +EM + KV+EG +
Sbjct: 804 AKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF------N 857
Query: 267 RVKSFLKFLLGGGW--KINENMAQKLVKCY-------CELGRVDELEEQLETLTKCNQSP 317
R +F++ G +I EN+A ++ Y C+ GR++ E + ++ C
Sbjct: 858 R-----EFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYS 912
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+S +I +L+ ++D M K+G
Sbjct: 913 AADKDLYSSLIESLSLASKVDKAFELYADMIKRG 946
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 25/333 (7%)
Query: 90 QLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
Q +W D+M++ G + Y LI K + + A +F M ++G P+ + +
Sbjct: 532 QQARKW-FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLG 193
LI SG + A ++ M + + PN TY A + G
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V G N Y++LI G K D + +M G P++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ L ++LD L +L N + +++ C++G+ DE + + +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA- 372
P V+ ++ +I + + ++D + +MG +G + V + CAA
Sbjct: 771 GCHPNVVT--YTAMIDGFGKAGKVDKCLELMRQMGAKGC---APNFVTYRVLINHCCAAG 825
Query: 373 -YDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRR 403
D LD +K +Y + A Y ++ G+ R
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 7/202 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M + P+ + L+C CL + + +M++ Y P+ + +++ I
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLI 376
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD------RFYEEM 240
+ G+ K G Y LI G S+D + Y EM
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ ++ + + + LC K ++ S ++ ++ G+ + + K++ C +V
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496
Query: 301 DELEEQLETLTKCNQSPEVLLH 322
D E + + P+V +
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTY 518
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 16/246 (6%)
Query: 65 FAFNSSQFSWDALI-TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
+ S+ +++AL+ L++ A LV D + L + L+ +G+ +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWR- 284
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+E + K D+ ++ +I LC + F + S PN TY
Sbjct: 285 -----EALALIEKEEFKLDTVIYTQMISG-LCEASLFEEAMDFLSRMRSSSCIPNVVTYR 338
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G + + + I G + + + SLIH ++ D+ + ++M
Sbjct: 339 ILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDC 398
Query: 244 GIIPSIPILEKVLEGLCARRKLDRV-------KSFLKFLLGGGWKINENMAQKLVKCYCE 296
G P + ++ G+C KL + K++ + +L +N+ L +C C
Sbjct: 399 GCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGE-MLDAHVVLNKVNVSNLARCLCG 457
Query: 297 LGRVDE 302
G+ ++
Sbjct: 458 AGKFEK 463
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 97 LDKMLKGNESCLDEYACL----IALSGKVQNVPF---------------AMHVFTSMEAQ 137
L+++++GN+ +DE C + L G + F A +F M
Sbjct: 209 LNQLVRGNQ--VDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGF 266
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G PD +N+LI +V L + ++S + P+ TY + ISG+ LG ++
Sbjct: 267 GCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEK 326
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + I++G N T+ LI+G K D S + YEEM+ LG P I +++
Sbjct: 327 ASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLID 386
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G C K++R L NE L C+ R+ E
Sbjct: 387 GHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHE 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 5/209 (2%)
Query: 97 LDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L ++L N+ D Y +I+ K+ + A +F +M + GIKP++ FN LI
Sbjct: 295 LKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFG 354
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVN 213
GD+V+A +++E M+ P+ T+ + I G G V+ ++ W+ N A S N
Sbjct: 355 KVGDMVSAENMYEEMLLL-GCPPDIITFTSLIDGHCRTGKVERSLKLWHELN-ARNLSPN 412
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
T+ L + K F ++ I+ + V++G C +D L
Sbjct: 413 EYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILA 472
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ K ++ L+ +C GR+ E
Sbjct: 473 EMEEKRCKPDKITYTILIIGHCMKGRLSE 501
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 107/241 (44%), Gaps = 19/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD++ ++ +I + V A LFE M S P+ TY I
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM-KSNHVVPDVFTYTILI 522
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F +G + KW+ + G + NV TY +LIH LKAR S + +E M+S G I
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCI 582
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQK--------L 290
P++ +++G C ++++ + G +KI++ + L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ +V E + L+ ++ P ++ + +I + +LD+ + +M ++
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIV--YDALIDGFCKVGKLDEAQMVFTKMSER 700
Query: 351 G 351
G
Sbjct: 701 G 701
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ + +L+ + V A L ++M S E +PN YDA I GF +G +D
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G+ NV TY SLI K + D + M+ P++ I ++++GLC
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
K D + + G N ++ + + G+VD+ E + + +P +
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFV 812
Query: 321 LH 322
+
Sbjct: 813 TY 814
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 117/316 (37%), Gaps = 42/316 (13%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWR--LDKM-LKGNESCLDEYACLIALSGKVQNVPFAM 128
F++ AL+ L KA V E R LD M ++G E Y LI KV + A
Sbjct: 637 FTYGALVDGLC-----KAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQ 691
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VFT M +G P+ ++SLI + AL + M+ + PN Y I G
Sbjct: 692 MVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS-CAPNVIIYTEMIDG 750
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+G D + + G NV TY ++I G KA D +M + G P+
Sbjct: 751 LCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGW--------------------------KI 282
++ CA LD L + W +I
Sbjct: 811 FVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEI 870
Query: 283 NENMAQKLVKCY-------CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
EN+A ++ Y C+ GR++ E + ++ C +S +I +L+
Sbjct: 871 AENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLAS 930
Query: 336 RLDDVEYSVGRMGKQG 351
++D M K+G
Sbjct: 931 KVDKAFELYADMIKRG 946
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 25/333 (7%)
Query: 90 QLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
Q +W D+M++ G + Y LI K + + A +F M ++G P+ + +
Sbjct: 532 QQARKW-FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLG 193
LI SG + A ++ M + + PN TY A + G
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V G N Y++LI G K D + +M G P++
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ L ++LD L +L N + +++ C++G+ DE + + +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA- 372
P V+ ++ +I + + ++D + +MG +G + V + CAA
Sbjct: 771 GCHPNVVT--YTAMIDGFGKAGKVDKCLELMRQMGAKGC---APNFVTYRVLINHCCAAG 825
Query: 373 -YDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRR 403
D LD +K +Y + A Y ++ G+ R
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 7/202 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M + P+ + L+C CL + + +M++ Y P+ + +++ I
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-PSRRIFNSLI 376
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD------RFYEEM 240
+ G+ K G Y LI G S+D + Y EM
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ ++ + + + LC K ++ S ++ ++ G+ + + K++ C +V
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496
Query: 301 DELEEQLETLTKCNQSPEVLLH 322
D E + + P+V +
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTY 518
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 16/246 (6%)
Query: 65 FAFNSSQFSWDALI-TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
+ S+ +++AL+ L++ A LV D + L + L+ +G+ +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWR- 284
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+E + K D+ ++ +I LC + F + S PN TY
Sbjct: 285 -----EALALIEKEEFKLDTVIYTQMISG-LCEASLFEEAMDFLSRMRSSSCIPNVVTYR 338
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G + + + I G + + + SLIH ++ D+ + ++M
Sbjct: 339 ILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDC 398
Query: 244 GIIPSIPILEKVLEGLCARRKLDRV-------KSFLKFLLGGGWKINENMAQKLVKCYCE 296
G P + ++ G+C KL + K++ + +L +N+ L +C C
Sbjct: 399 GCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGE-MLDAHVVLNKVNVSNLARCLCG 457
Query: 297 LGRVDE 302
G+ ++
Sbjct: 458 AGKFEK 463
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 10/326 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I +NV A+++FT M+ +GI+P+ +NSLI CLC
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 301
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
L L EY + K + + +C + D DLF K
Sbjct: 481 LEKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKGVKPNVI 536
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
Y +++G+ R GL + D++ EMK
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMK 562
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ +G + L
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL---IDRMVARGCQPDLFT 222
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++ ++I A +V AL+LF M
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM- 281
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I + G ++ + I + NV T+ +LI +K
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQ 423
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + +P A+ V M G +PD +SL+ C G ++ A++L + M
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQM 176
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E Y+PN+ T++ I G +A G ++ TY ++++G K D
Sbjct: 177 FVME-YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++M I + I +++ LC + ++ + + G + N
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L++C C GR + L + + +P V+ FS +I + +L + E M K
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIK 353
Query: 350 QGL 352
+ +
Sbjct: 354 RSI 356
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF ++ ++PD +N +I +G V LF +S + KPN Y I
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF-CSLSLKGVKPNVIIYTTMI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF G + + + G N TY +LI L+ D + +EM S G +
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V+ L R KS+L+ L
Sbjct: 603 GDASTISMVINMLHDGR---LEKSYLEML 628
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A VF ++ G++P FN+LI + GD+ L M +S +P+ TY
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGA-QPDVYTYSIL 212
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G G +D N+ + + G N T+ +LIHG K D Y++M+S G+
Sbjct: 213 INGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGL 272
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++ GLC + +L +V + ++ G K ++ L+ C+ G +LE
Sbjct: 273 SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEG---DLEI 329
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
LE K Q S RLDDV Y+
Sbjct: 330 ALELRNKMIQE-----------------SIRLDDVAYT 350
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 2/179 (1%)
Query: 141 PDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P S F +++ C G++ A S+F+ ++ +P+ +++ I+G+ LG++D
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFD-AITKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +A A+G +V TY LI+G K D + + EM+ G++P+ ++ G
Sbjct: 192 RLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGH 251
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C K+D K +L G + L+ C+ G + ++ + ++ + P+
Sbjct: 252 CKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K + V AM ++ M +QG+ PD +N+LI G++ L + M+
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMI 303
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ +Y I G G+++ + I ++ Y +LI +
Sbjct: 304 MN-GLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRA 362
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
++ EM+S+G+ P ++ C +R
Sbjct: 363 SDAEKMLREMLSVGLKPDNGTYTMIINEFCKKR 395
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 11/312 (3%)
Query: 111 YACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y C + ++G + ++ A VF M + G+KP++ ++ +LI + G A+ + ++
Sbjct: 447 YTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKV 506
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + +P+ Y++ I G ++ + I G NV TY +LIHG K+
Sbjct: 507 M-DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ DR+++EM+ GI P+ + +++G C S + +LG +
Sbjct: 566 EMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYS 625
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
L+ G++ E L + P+V + SG + + EY
Sbjct: 626 ALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEY---- 681
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAG 405
M ++G+S + +I + +R D I G A TY ++ GY ++G
Sbjct: 682 MCQKGIS-PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSG 740
Query: 406 LSGKLDSVINEM 417
K + +EM
Sbjct: 741 NLSKAFRLFDEM 752
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 3/251 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S +++ +I L + L+ +DK KG + + Y+ LI GK + A
Sbjct: 270 SLVTYNVVIGGLCRAGEVDEAFELKKLMDK--KGLVADVFTYSILIDGFGKQKRCTEAKL 327
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M ++G+KP + +LI + GD A + E M++ K N TY+A + G
Sbjct: 328 MLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLA-RGVKLNLFTYNALVKGV 386
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++ + I G + QTY ++I G LK ++ V EM ++P+
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTA 446
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC ++ + ++ G K N + L+K + + GR E L+
Sbjct: 447 YTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKV 506
Query: 310 LTKCNQSPEVL 320
+ K P+VL
Sbjct: 507 MDKKGVQPDVL 517
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 10/260 (3%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
D+ +NS +I +S ++A+ L +++ LK N + Y LI K
Sbjct: 515 DVLCYNS------VIIGLCKSRKMEEAKDYLVEMIERGLKPN---VYTYGALIHGYCKSG 565
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A F M GI P+ V +LI G A S+F M+ + P+ +TY
Sbjct: 566 EMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVH-PDVRTY 624
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I G G + + + + G +V TY S+I G K + +E M
Sbjct: 625 SALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQ 684
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P+I ++ GLC +++R + + G G N ++ YC+ G + +
Sbjct: 685 KGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSK 744
Query: 303 LEEQLETLTKCNQSPEVLLH 322
+ +T P+ ++
Sbjct: 745 AFRLFDEMTLKGVPPDSFVY 764
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 111/270 (41%), Gaps = 5/270 (1%)
Query: 49 QVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC 107
Q ++ K L+ + ++ ALI ++ +A V E L + +K N
Sbjct: 319 QKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLN--- 375
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y L+ K ++ A + M GIKPD+ +N++I L + L
Sbjct: 376 LFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLS 435
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M S P + T I+G G+++ ++ + ++ G N Y +LI G ++
Sbjct: 436 EMKKSN-LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQE 494
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
F R + M G+ P + V+ GLC RK++ K +L ++ G K N
Sbjct: 495 GRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTY 554
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSP 317
L+ YC+ G + + + + C +P
Sbjct: 555 GALIHGYCKSGEMQVADRYFKEMLGCGIAP 584
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 9/203 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK+Q AM + + +G+ PD +NS+I G + A L E M + P
Sbjct: 634 NGKLQG---AMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQ-KGISP 689
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A I+G G ++ + + G + N TY ++I G K+ + R +
Sbjct: 690 NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL--LGGGWKINENMAQKLVKCYC 295
+EM G+ P + +++G R++ + K+ FL + G+ ++ L+ +C
Sbjct: 750 DEMTLKGVPPDSFVYSALIDG--CRKEGNTEKALSLFLESVQKGFASTSSL-NALMDGFC 806
Query: 296 ELGRVDELEEQLETLTKCNQSPE 318
+ G+V E + LE + + P+
Sbjct: 807 KSGKVIEANQLLEDMVDKHVKPD 829
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 8/194 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ALI L ++ ++A+ + + K L N YA +I K N+ A +F
Sbjct: 693 TYNALINGLCKAGEIERARELFDGIPGKGLAHNAVT---YATIIDGYCKSGNLSKAFRLF 749
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +G+ PDS V+++LI C G+ ALSLF + S ++ ++ + +A + GF
Sbjct: 750 DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF--LESVQKGFASTSSLNALMDGFCK 807
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G V N+ + + TY LI K ++F+ +M ++P+
Sbjct: 808 SGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALT 867
Query: 252 LEKVLEG--LCARR 263
+L G + RR
Sbjct: 868 YTALLSGYNMAGRR 881
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 4/201 (1%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV A + M + +KPD + LI +G + A F + + P
Sbjct: 808 SGKVIE---ANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFF-VDMQKRNLMP 863
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ TY A +SG++ G M + IA + T+ +I LK D +
Sbjct: 864 NALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLV 923
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++M+ G S + +++ LC + + V L+ + G ++ LV+C+ +
Sbjct: 924 DDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKA 983
Query: 298 GRVDELEEQLETLTKCNQSPE 318
G++D L+++ + P+
Sbjct: 984 GKMDGAARVLKSMVRFKWVPD 1004
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
D Y ++ K + A+ VF +M+++ P +N LI + +G+ AL LF+
Sbjct: 11 DAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQS 70
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + +P+ TY+ ISG S GN + K + + NV TY S+I +K
Sbjct: 71 MKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEA 130
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + EEMM+ G P + V++G +++ + + ++ G+K +
Sbjct: 131 KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYH 190
Query: 289 KLVKCYCELGRVDE 302
L+ ++G++DE
Sbjct: 191 ILIHGLAKIGKLDE 204
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 9/244 (3%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F++ ++I SL + + P+++ VLE + M G + + ++ + N+ A V
Sbjct: 117 FTYSSIIKSLVKEAKPEESYKVLE---EMMAAGCNPDVFAFNGVMQGFARSNNMEKAREV 173
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFISGF 189
+ M G KPD+ ++ LI G + +L + E+ + + Y PN T+ I G
Sbjct: 174 YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGL 233
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ + + + + AG N TY +LI G +A +E+M I P
Sbjct: 234 CRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA 293
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKCYC---ELGRVDELEE 305
++ G C R +D + + + GG G + L+ +C +LGR +EL
Sbjct: 294 VAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVA 353
Query: 306 QLET 309
++ T
Sbjct: 354 EMGT 357
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + V A +F M I PD+ +NSLI G + A L+ M
Sbjct: 261 YTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 320
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P T++ I GF LG + N+ A G + + TY LI G +A
Sbjct: 321 GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKL 380
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D Y++M + + GLC +D+ + + G N + L
Sbjct: 381 DEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRIL 440
Query: 291 VKCYCELGRVDELEEQLE 308
+ +LGRV++ ++ +E
Sbjct: 441 SESLIKLGRVEDAQKLME 458
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 147/362 (40%), Gaps = 11/362 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119
D V F+ Q S+ LI L +A L + +++ L + + Y +I
Sbjct: 153 DHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVM--YNIIINSLC 210
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A +++ M + I PD FNSLI G + A LF MV + P+
Sbjct: 211 KDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL-KNINPDV 269
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+ + GN+ A + G +V TY SL+ G + + +
Sbjct: 270 YTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFST 329
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M LG+ P ++ GL + +D S K + G + L+ C+LGR
Sbjct: 330 MSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGR 389
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+ + ++ + ++L ++ +I + + +D V ++ QG+ S
Sbjct: 390 ISYAWQLVDEMHNNGIPADILT--YNSLIDVLCKNHHIDKAIALVKKIKDQGIQ-PSMYT 446
Query: 360 VEMVI---CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
++I C R + D+F D + Y + TY+ ++ G + GL + + ++++
Sbjct: 447 YNILIDGLCKGGRLK--NAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSK 504
Query: 417 MK 418
M+
Sbjct: 505 ME 506
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V V A HVF++M G+ P + +N +I V ALSLF+ M + P++
Sbjct: 317 VNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEM-CCKGIAPDTV 375
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY++ I G LG + + G ++ TY SLI K D +++
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKI 435
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
GI PS+ +++GLC +L + + LL G+ +N ++ C+ G
Sbjct: 436 KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLF 495
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+E E L + P+ + + IIR D + E + M +GL
Sbjct: 496 NEAEVLLSKMENNGIIPDAVT--YETIIRALFRKDENEKAEKLLREMIIRGL 545
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-------------- 156
Y +I GK++ V A+ +F M +GI PD+ +NSLI LC
Sbjct: 342 YNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDG-LCKLGRISYAWQLVDEM 400
Query: 157 ------GDVVTALSLFEIM---------------VSSEEYKPNSKTYDAFISGFSSLGNV 195
D++T SL +++ + + +P+ TY+ I G G +
Sbjct: 401 HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRL 460
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ + G+SVN TY +I+G K F+ + +M + GIIP E +
Sbjct: 461 KNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETI 520
Query: 256 LEGLCARRKLDRVKSFLKFLLGGG 279
+ L + + ++ + L+ ++ G
Sbjct: 521 IRALFRKDENEKAEKLLREMIIRG 544
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 122/321 (38%), Gaps = 42/321 (13%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E +GI P FN L+ C C G++ A S+F ++ Y P + T++ I+G
Sbjct: 85 LELKGITPTIVTFNILV-NCYCHLGEMTFAFSIFAKILKLG-YHPTTITFNTLINGICLN 142
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHG----------------------------- 223
G + ++ IA GF ++ +Y +LI+G
Sbjct: 143 GKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMY 202
Query: 224 -----SL-KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SL K + + Y EM++ I P + ++ G C +L ++
Sbjct: 203 NIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL 262
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
+ LV C+ G + + L + K P+V+ +S ++ Y L + +
Sbjct: 263 KNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVT--YSSLMDGYCLVNEV 320
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDF 396
+ ++ M + G++ A ++I + D L LF + TY+
Sbjct: 321 NKAKHVFSTMSRLGVA-PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379
Query: 397 LVAGYRRAGLSGKLDSVINEM 417
L+ G + G +++EM
Sbjct: 380 LIDGLCKLGRISYAWQLVDEM 400
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 4/204 (1%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
I L+GK++ A+H + A G D + +LI G+ AL + + + +
Sbjct: 139 ICLNGKLKE---ALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLK-KIEGKL 194
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ Y+ I+ V + Y+ I S +V T+ SLI G
Sbjct: 195 VNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAF 254
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ EM+ I P + +++ LC + R K+ L ++ G + L+ Y
Sbjct: 255 GLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGY 314
Query: 295 CELGRVDELEEQLETLTKCNQSPE 318
C + V++ + T+++ +P
Sbjct: 315 CLVNEVNKAKHVFSTMSRLGVAPH 338
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHV 130
++++LI L K ++ W+L + N D Y LI + K ++ A+ +
Sbjct: 376 TYNSLIDGL----CKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIAL 431
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
++ QGI+P +N LI G + A +F+ ++ + Y N+ TY+ I+G
Sbjct: 432 VKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLI-KGYSVNAWTYNIMINGLC 490
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + G + TYE++I + + + ++ EM+ G++
Sbjct: 491 KEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 153/352 (43%), Gaps = 23/352 (6%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYACLIALS-GKVQNVPFAMHVFTS 133
AL+ +L P +VL RL ++G +E C + S G++ +A VF
Sbjct: 123 ALVGALWRRGP----VVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQ 178
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G++P +AV+N+LI A + +G V TA F+ M ++ +P+ TY++ + G G
Sbjct: 179 MPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM-PADGCRPDHFTYNSLVHGVCRRG 237
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD + G NV TY L+ G A + R ++M G+ PS
Sbjct: 238 IVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYR 297
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G+ + D+ L LG ++ + ++ C L + D +E +E +
Sbjct: 298 TLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYC---LSKKDMAKEAVEFEKRM 354
Query: 314 NQSPEVLLHFFSGIIRLYAL-----SDRLDDVEYSVGRMGKQGLSFKSAEDVE-MVICSY 367
+ +L GI+ AL SD + ++ + G G DV MVI S
Sbjct: 355 SARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGF------DVYIMVIKSL 408
Query: 368 FRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEMK 418
C + + + +L H+ L +Y+ ++ + +AG K + ++ EM+
Sbjct: 409 LNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQ 460
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 2/223 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD +K G D Y +I +N A H M +G+ +N +I +
Sbjct: 386 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVK 445
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G V A + + M + + PN T++ ISG+S LGNV + GF ++
Sbjct: 446 AGAVDKAEEIVKEM-QDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDII 504
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ SLI G D +EEM G+ P+ ++ LC+ +++ L +
Sbjct: 505 TFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKM 564
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G + L+ +C + +VD+ E+ + + P+
Sbjct: 565 KIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 1/208 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+LKG S + Y +I K V A + M+ +G P+ FN+LI G+V
Sbjct: 425 VLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNV 484
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A + + M+ + P+ T+ + I G + +D + G N QTY
Sbjct: 485 HNAKVVLK-MLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNV 543
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+H A + +M G+ P ++ C RK+D+ + ++ G
Sbjct: 544 LMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFG 603
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQL 307
+ L+K C+ RV++ +E L
Sbjct: 604 VVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+Y+ I F G VD + GF N+ T+ +LI G K + + + +
Sbjct: 435 SYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML 494
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK---LVKCYCEL 297
M G +P I +++GLC +LD +F+ F W + N AQ L+ C
Sbjct: 495 MEHGFMPDIITFTSLIDGLCNTHQLD--DAFVCFEEMAEWGVRPN-AQTYNVLMHTLCSA 551
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
G V++ + L + +P+ + F+ +I + ++D E
Sbjct: 552 GHVNKAIDLLNKMKIDGVTPDA--YSFNALILSFCRMRKVDKAE 593
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 10/326 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I +NV A+++FT M+ +GI+P+ +NSLI CLC
Sbjct: 227 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 285
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 286 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
L L EY + K + + +C + D DLF K
Sbjct: 465 LEKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKGVKPNVI 520
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
Y +++G+ R GL + D++ EMK
Sbjct: 521 IYTTMISGFCRKGLKEEADALFREMK 546
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ +G + L
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL---IDRMVARGCQPDLFT 206
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++ ++I A +V AL+LF M
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM- 265
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I + G ++ + I + NV T+ +LI +K
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQ 407
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + +P A+ V M G +PD +SL+ C G ++ A++L + M
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQM 160
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E Y+PN+ T++ I G +A G ++ TY ++++G K D
Sbjct: 161 FVME-YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 219
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++M I + I +++ LC + ++ + + G + N
Sbjct: 220 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 279
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L++C C GR + L + + +P V+ FS +I + +L + E M K
Sbjct: 280 LIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIK 337
Query: 350 QGL 352
+ +
Sbjct: 338 RSI 340
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF ++ ++PD +N +I +G V LF +S + KPN Y I
Sbjct: 468 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF-CSLSLKGVKPNVIIYTTMI 526
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF G + + + G N TY +LI L+ D + +EM S G +
Sbjct: 527 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 586
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V+ L R KS+L+ L
Sbjct: 587 GDASTISMVINMLHDGR---LEKSYLEML 612
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 12/260 (4%)
Query: 88 KAQLVLE-WRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
KA+LV + + L + C D Y LI+ V + +A+ +F M+ + I P+
Sbjct: 213 KAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVY 272
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
FN L+ G V A + IM+ ++ KP+ TY++ + G+ S+ V+ + +
Sbjct: 273 TFNILVDGFCKEGKVNDAKVVLAIMMK-DDIKPDVVTYNSLMDGYCSINKVNKAKDIFDS 331
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G NVQ Y ++++G K + D +EEM IIP++ +++GLC K
Sbjct: 332 MASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC---K 388
Query: 265 LDRVKSFLKF---LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L R+ LK + G N ++ C+ VD+ L L P+ +
Sbjct: 389 LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPD--M 446
Query: 322 HFFSGIIRLYALSDRLDDVE 341
+ ++ +I+ S RL+D +
Sbjct: 447 YTYTILIKGLCQSGRLEDAQ 466
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 20/253 (7%)
Query: 63 DIFAFNS-----SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D F FN SQ ++L S+ + KK + ++KG + L
Sbjct: 95 DFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKG-----------LCL 143
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G + A+H + AQG D + +LI G + AL L + V + +P
Sbjct: 144 KGHIHQ---ALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLK-RVDGKLVQP 199
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y+ I V+ Y+ +A +V TY +LI G + +
Sbjct: 200 NAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLF 259
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M I P++ +++G C K++ K L ++ K + L+ YC +
Sbjct: 260 NKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSI 319
Query: 298 GRVDELEEQLETL 310
+V++ ++ +++
Sbjct: 320 NKVNKAKDIFDSM 332
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K+ + +A+ + M +G P+ ++S++ A + V A++L +
Sbjct: 379 YSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLT-NL 437
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY I G G ++ + + G++++V Y +I G F
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
D +M G IP+ E V+ L + + D + L+ ++ G
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + Y+ ++ K +V A+ + T+++ QGI+PD + LI SG +
Sbjct: 405 RGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLED 464
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A ++FE ++ + Y + Y I GF G D + G N +TYE +I
Sbjct: 465 AQNVFEDLLV-KGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523
Query: 222 HGSLKARDFDSVDRFYEEMMSLGII 246
+ + D+ ++ EM+ G++
Sbjct: 524 LSLFEKDENDTAEKLLREMIVRGLL 548
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 36/229 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + ME GI+ D FN LI G + S+F ++ + Y P + T++ I
Sbjct: 80 ALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKIL-KKGYHPTAITFNTLI 138
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG----------------------- 223
G G++ ++ +A GF ++ +Y +LI+G
Sbjct: 139 KGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQ 198
Query: 224 ------------SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
KA+ + Y +M++ I P + ++ G A KL+
Sbjct: 199 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDL 258
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ N LV +C+ G+V++ + L + K + P+V+
Sbjct: 259 FNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVV 307
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 153/352 (43%), Gaps = 23/352 (6%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYACLIALS-GKVQNVPFAMHVFTS 133
AL+ +L P +VL RL ++G +E C + S G++ +A VF
Sbjct: 123 ALVGALWRRGP----VVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQ 178
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G++P +AV+N+LI A + +G V TA F+ M ++ +P+ TY++ + G G
Sbjct: 179 MPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM-PADGCRPDRFTYNSLVHGVCRRG 237
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD + G NV TY L+ G A + R ++M G+ PS
Sbjct: 238 IVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYR 297
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G+ + D+ L LG ++ + ++ C L + D +E +E +
Sbjct: 298 TLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYC---LSKKDMAKEAVEFAKRM 354
Query: 314 NQSPEVLLHFFSGII-----RLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE-MVICSY 367
+ +L GI+ + +SD + ++ + G G DV MVI S
Sbjct: 355 SARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGF------DVYIMVIKSL 408
Query: 368 FRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEMK 418
C + + + +L H+ L +Y+ ++ + +AG K + ++ EM+
Sbjct: 409 LNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQ 460
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 2/223 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD +K G D Y +I +N A H M +G+ +N +I +
Sbjct: 386 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVK 445
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G V A + + M + + PN T++ ISG+S LGNV + GF ++
Sbjct: 446 AGAVDKAEEIVKEM-QDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDII 504
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ SLI G D +EEM G+ P+ ++ LC+ +++ L +
Sbjct: 505 TFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKM 564
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G + L+ +C + +VD+ E+ + + P+
Sbjct: 565 KIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 1/208 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+LKG S + Y +I K V A + M+ +G P+ FN+LI G+V
Sbjct: 425 VLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNV 484
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A + + M+ + P+ T+ + I G + +D + G N QTY
Sbjct: 485 HNAKVVLK-MLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNV 543
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+H A + +M G+ P ++ C RK+D+ + ++ G
Sbjct: 544 LMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFG 603
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQL 307
+ L+K C+ RV++ +E L
Sbjct: 604 VVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+Y+ I F G VD + GF N+ T+ +LI G K + + + +
Sbjct: 435 SYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML 494
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK---LVKCYCEL 297
M G +P I +++GLC +LD +F+ F W + N AQ L+ C
Sbjct: 495 MEHGFMPDIITFTSLIDGLCNTHQLD--DAFVCFEEMAEWGVRPN-AQTYNVLMHTLCSA 551
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
G V++ + L + +P+ + F+ +I + ++D E
Sbjct: 552 GHVNKAIDLLNKMKIDGVTPDA--YSFNALILSFCRMRKVDKAE 593
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 170/433 (39%), Gaps = 58/433 (13%)
Query: 35 TSVSSSNPL-----ISRLLQVPVSQIK------TTLDSVDIFAFNSSQFSWDALITSL-Q 82
T + S PL +RLL V ++++K + + + I + ++ + ++ + +
Sbjct: 71 TRMVHSRPLPSIVDFTRLLSV-IAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCR 129
Query: 83 SSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
SS P +A L KM+K G E L + L+ + A+ +F + G +P
Sbjct: 130 SSQPCRASCFL----GKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRP 185
Query: 142 DSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
+ + +LI CLC + A+ +F M +PN TY++ +SG +G
Sbjct: 186 NVVTYTTLI-HCLCKNRHLNHAVEIFNQM-GDNGIRPNVVTYNSLVSGLCEIGRWSDAAW 243
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G NV T+ +LI +K Y+ M+ + + P + ++ GLC
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLC 303
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+LD + + G+ NE L+ +C+ RV++ + +++ +
Sbjct: 304 TYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTI 363
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQ--------------GLSFKSAEDVEMVICS 366
++ +I+ Y L R D + +MG + GL + + ++I
Sbjct: 364 T--YTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFK 421
Query: 367 YFR-------CAAY--------------DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
Y R Y D DLF K TY +++G+ R G
Sbjct: 422 YMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRG 481
Query: 406 LSGKLDSVINEMK 418
+ D++ +MK
Sbjct: 482 FIHEADALFKKMK 494
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A VF M ++ PD +N L+ +G V AL +F+ M
Sbjct: 365 YTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYM- 423
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N TY I G +G V+ + + + G NV TY ++I G +
Sbjct: 424 RKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFI 483
Query: 231 DSVDRFYEEMMSLGIIPS 248
D +++M G +P+
Sbjct: 484 HEADALFKKMKEDGFLPN 501
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 1/176 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ ++ + LI G A +F M
Sbjct: 330 YTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQM- 388
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ +TY+ + G G V+ + +N+ TY +I G K
Sbjct: 389 GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKV 448
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + + S G+ P++ ++ G C R + + K + G+ NE++
Sbjct: 449 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A VF ++ G++P FN+LI + GD+ L M +S +P+ TY
Sbjct: 154 LAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGA-QPDVYTYSIL 212
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G G +D N+ + + G N T+ +LIHG K D Y++M+S G+
Sbjct: 213 INGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGL 272
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++ GLC + +L +V + ++ G K ++ L+ C+ G +LE
Sbjct: 273 SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEG---DLEI 329
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
LE K Q S RLDDV Y+
Sbjct: 330 ALELRNKMIQE-----------------SIRLDDVAYT 350
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 2/179 (1%)
Query: 141 PDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P S F +++ C G++ A S+F+ ++ +P+ +++ I+G+ LG++D
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFD-AITKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +A A+G +V TY LI+G K D + + EM+ G++P+ ++ G
Sbjct: 192 RLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGH 251
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C K+D K +L G + L+ C+ G + ++ + ++ + P+
Sbjct: 252 CKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K + V AM ++ M +QG+ PD +N+LI G++ L + M+
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMI 303
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ +Y I G G+++ + I ++ Y +LI +
Sbjct: 304 MNG-LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRA 362
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
++ EM+S+G+ P ++ C +R
Sbjct: 363 GDAEKMLREMLSVGLKPDNGTYTMIINEFCKKR 395
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 15/225 (6%)
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
DA+ KW G +V ++ +LI+G +K D D R M + G P + +
Sbjct: 160 DAITKW-------GLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSIL 212
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ GLC KLD +L G N L+ +C+ +VD E + +
Sbjct: 213 INGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGL 272
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD- 374
SP+++ ++ +I L V + M GL ++ S C D
Sbjct: 273 SPDLIT--YNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGS---CKEGDL 327
Query: 375 --RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
L+L I+ S +L Y L++ R G +G + ++ EM
Sbjct: 328 EIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREM 372
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 7/243 (2%)
Query: 56 KTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115
++ D++ + S S++ LI + K L +RL + + + D Y I
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLI----NGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSI 211
Query: 116 ALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++G K + A +F M G+ P+ F +LI + V A+ +++ M+S +
Sbjct: 212 LINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLS-Q 270
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ TY+ I G G + ++ I G + +Y +LI GS K D +
Sbjct: 271 GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIA 330
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+M+ I ++ LC + + L+ +L G K + ++
Sbjct: 331 LELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINE 390
Query: 294 YCE 296
+C+
Sbjct: 391 FCK 393
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 153/352 (43%), Gaps = 23/352 (6%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKG-NESCLDEYACLIALS-GKVQNVPFAMHVFTS 133
AL+ +L P +VL RL ++G +E C + S G++ +A VF
Sbjct: 123 ALVGALWRRGP----VVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQ 178
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G++P +AV+N+LI A + +G V TA F+ M ++ +P+ TY++ + G G
Sbjct: 179 MPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM-PADGCRPDHFTYNSLVHGVCRRG 237
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD + G NV TY L+ G A + R ++M G+ PS
Sbjct: 238 IVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYR 297
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G+ + D+ L LG ++ + ++ C L + D +E +E +
Sbjct: 298 TLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYC---LSKKDMAKEAVEFEKRM 354
Query: 314 NQSPEVLLHFFSGIIRLYAL-----SDRLDDVEYSVGRMGKQGLSFKSAEDVE-MVICSY 367
+ +L GI+ AL SD + ++ + G G DV MVI S
Sbjct: 355 SARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGF------DVYIMVIKSL 408
Query: 368 FRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEMK 418
C + + + +L H+ L +Y+ ++ + +AG K + ++ EM+
Sbjct: 409 LNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQ 460
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD +K G D Y +I +N A H M +G+ +N +I +
Sbjct: 386 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVK 445
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G V A + + M + + PN T++ ISG+S LGNV + GF ++
Sbjct: 446 AGAVDKAEEIVKEM-QDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDII 504
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPI 251
T+ SLI G D +EEM G +PS I
Sbjct: 505 TFTSLIDGLCNTHQLDDAFVCFEEMAEWDEGFVPSNAI 542
>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
Length = 901
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 41/313 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L GK + A+ +F M A G+ PD+ FN+LI SG+ A LF MV
Sbjct: 267 YNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMV 326
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP++KTY+ ++ F+S+G+++ + K+Y AG + TY L
Sbjct: 327 -IRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRIL---------- 375
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
L+ LC R+ + + + ++ +L G ++E +
Sbjct: 376 -------------------------LQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVV 410
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+K Y +LG +D E + K + V FS I+ ++A ++ E+
Sbjct: 411 MKMYVDLGLLD---EAIAFFEKHCRGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGD 467
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
G + K + ++I +Y + YDR+ LF + TY+ L+ + G +
Sbjct: 468 G-NEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHR 526
Query: 410 LDSVINEMKFAEY 422
++ +MK A +
Sbjct: 527 AKKLLGKMKDAGF 539
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
GNE + EY +I G+ + +F SME G+ D +NSLI G A
Sbjct: 468 GNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRA 527
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L M + ++P +TY A I +S V + A+G NV Y LI
Sbjct: 528 KKLLGKMKDA-GFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILID 586
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG---LCARRKLDRVKSFLKFLLGGG 279
+ + + + GI P+ +L +++ + ++ + S + + GG
Sbjct: 587 MFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGP 646
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
I N ++ Y +L V E +E ++L + N + V
Sbjct: 647 DIIASN---AMLNLYAKLEMVTEAKEIFDSLRRNNHADAV 683
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TYDAF 185
A H+F S G + D +N +I A + SLFE M E P+ + TY++
Sbjct: 457 AEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESM--EESGVPSDECTYNSL 514
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I FS G K AGF +TY ++I + + EM + G+
Sbjct: 515 IQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGV 574
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ + +++ + + L G N + L+K Y + E ++
Sbjct: 575 EPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQD 634
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ + P+++ + ++ LYA
Sbjct: 635 LYSRMNDMDGGPDIIAS--NAMLNLYA 659
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A+ M ++G PD +N+L+ A G V A+ L +SS+ P
Sbjct: 236 KEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLN-QLSSKGCSPVL 294
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G S +G D K A G ++ TY SL+ G + D +F+ +
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHD 354
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ LG+ P+ ++ GLC RK DR FL +++ G K E
Sbjct: 355 LEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTE 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 124/323 (38%), Gaps = 44/323 (13%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
SM +G PD SLI G A + EI+ S P+ TY+ ISG S
Sbjct: 109 SMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAV-PDVITYNVLISGMCST 167
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIH----GSLKARDFDSVDRFYEEMMSLGIIPS 248
G K A + G S +V T+ LI+ L R D + E+M G P+
Sbjct: 168 GRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVL----EKMPKHGCTPN 223
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+L G C +K++R +L + G + L+ C+ G+VD E L
Sbjct: 224 SLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLN 283
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSD----------------RLDDVEYS-----VGRM 347
L+ SP VL+ + + I L + + D + YS + R
Sbjct: 284 QLSSKGCSP-VLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSRE 342
Query: 348 GKQGLSFKSAEDVEM------------VICSYFRCAAYDR-LDLFLDHIKGSYKLRRATY 394
GK + K D+E+ ++ + DR +D ++ K A+Y
Sbjct: 343 GKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASY 402
Query: 395 DFLVAGYRRAGLSGKLDSVINEM 417
L+ G GL+ + ++NE+
Sbjct: 403 TILIEGLAYEGLAKEALELLNEL 425
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G P FN LI G + A+ + E M PNS +Y+ +
Sbjct: 173 AEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM-PKHGCTPNSLSYNPLL 231
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF ++ ++ + G ++ TY +L+ K D+ ++ S G
Sbjct: 232 HGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCS 291
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + V++GL K D+ L + G K + LV G+VDE
Sbjct: 292 PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDE 347
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ L+T+L A + L +L KG L Y +I KV A +
Sbjct: 261 TYNTLLTALCKDGKVDAAVELLNQLSS--KGCSPVLITYNTVIDGLSKVGKTDQAAKLLD 318
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M A+G+KPD ++SL+ G V A+ F + KPN+ TY+A + G
Sbjct: 319 EMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDL-EVLGVKPNAITYNAIMLGLCKA 377
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
D + A + G +Y LI G
Sbjct: 378 RKTDRAIDFLAYMVQRGCKPTEASYTILIEG 408
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 22/299 (7%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALSLFEIMVSSEEYKPNSKTY 182
V+ M + I P+ FN++I LC +GDVV + ++ + PN TY
Sbjct: 217 VYKEMIRRKISPNLITFNTVING-LCKVGKLNKAGDVVDDMKVWG-------FWPNVVTY 268
Query: 183 DAFISGFSSLGNVDAMNKWYA---ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ I G+ +G V M K A + S N T+ LI G K + + + +EE
Sbjct: 269 NTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEE 328
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P++ ++ GLC KL+ K L +L K N L+ YC+
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKL 388
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
++E E + + K +P V+ F+ ++ Y ++++ M ++G +A
Sbjct: 389 LEEARELFDNIGKQGLTPNVIT--FNTLLHGYCKFGKMEEAFLLQKVMLEKGF-LPNAST 445
Query: 360 VEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + R + + L+ ++ K TY+ L++ + K +I+EM
Sbjct: 446 YNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM 504
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 1/192 (0%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V + A + M + P+S FN LI ++ AL +FE M S+ KP
Sbjct: 279 GRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM-QSQGLKPT 337
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY++ ++G + G ++ +++ NV TY +LI+G K + + ++
Sbjct: 338 VVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFD 397
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ G+ P++ +L G C K++ K +L G+ N + L+ +C G
Sbjct: 398 NIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREG 457
Query: 299 RVDELEEQLETL 310
+++E++ L +
Sbjct: 458 KMEEVKNLLNEM 469
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 9/241 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVF 131
++++L+ L + VL LD+ML N + + Y LI K + + A +F
Sbjct: 340 TYNSLVNGLCNEGKLNEAKVL---LDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
++ QG+ P+ FN+L+ G + A L ++M+ + + PN+ TY+ I GF
Sbjct: 397 DNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE-KGFLPNASTYNCLIVGFCR 455
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G ++ + G + TY LI + ++ R +EM+ G+ PS
Sbjct: 456 EGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLT 515
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE----LEEQL 307
+L G C L + K + G N L++ YC G++++ L E L
Sbjct: 516 YNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEML 575
Query: 308 E 308
E
Sbjct: 576 E 576
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 111 YACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y CLI GK++ V ++ M+ +G+K D+ +N LI A + A L +
Sbjct: 446 YNCLIVGFCREGKMEEVK---NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLID 502
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + KP+ TY+ ++G+ GN+ A G NV TY LI G +
Sbjct: 503 EMLD-KGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRK 561
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + EM+ G+IP+ E + E + + L ++ L
Sbjct: 562 GKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEGHL 606
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
S +F+SL +CSG + +++V + Y NSKT + F G+
Sbjct: 143 SLIFHSL---SVCSGQFCANSIIADMLVLA--YVENSKTVLG-LEAFKRAGDYR------ 190
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ ++V + L+ +K +F V+ Y+EM+ I P++ V+ GLC
Sbjct: 191 -------YKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKV 243
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
KL++ + + G+ N L+ YC++GRV ++
Sbjct: 244 GKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 11/256 (4%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWR-LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMH 129
F D + L S K+ +L + L KM + G ++ + Y+ LI+ K+ + A
Sbjct: 387 FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M A G+KP+ ++ SLI G++ A L+ M + + PN+ T+ A ISG
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEM-TGKGISPNTYTFTALISGL 505
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ NK + + N TY LI G K + +EM+ G++P
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE------NMA--QKLVKCYCELGRVD 301
++ GLC+ ++ + F+ L G K+NE N+ L+ C++G +D
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMD 625
Query: 302 ELEEQLETLTKCNQSP 317
+ E + N P
Sbjct: 626 KAELLCREMLASNSLP 641
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 5/253 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
++ V F S F ++ALI S+ + +A+ + K L N+ Y+ LI
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV---TYSILIDS 399
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + A+H M GIK ++SLI G + A SLF+ M+++ KP
Sbjct: 400 FCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG-LKP 458
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N Y + ISG+ G + + Y G S N T+ +LI G A ++ +
Sbjct: 459 NVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLF 518
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM+ +IP+ ++EG C R L ++ G + + L+ C
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCST 578
Query: 298 GRVDELEEQLETL 310
GRV E E + L
Sbjct: 579 GRVSEAREFMNDL 591
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 135/338 (39%), Gaps = 20/338 (5%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTS 133
+ TSL S K+ +L +RL + G + Y +SG + A +F
Sbjct: 461 VIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGE 520
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + P+ +N LI G+ V A L + MV + P++ TY ISG S G
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVE-KGLVPDTYTYRPLISGLCSTG 579
Query: 194 NV--------DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
V D + N G NV TY +LI+G K D + EM++
Sbjct: 580 RVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNS 639
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P+ L+ L + +++ LL G+ N L++ +C+LGR+ E E
Sbjct: 640 LPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-EGFLANTVTYNILIRGFCKLGRIQEAAE 698
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
L + SP+ + +S II Y L + M +G+ + + V
Sbjct: 699 VLVNMIDSGISPDCI--SYSTIIYEYCRRGDLKEAIKLWESMLNRGV---NPDTVAYNFL 753
Query: 366 SYFRCAAYD---RLDLFLDHIKGSYKLRRATYDFLVAG 400
Y C + +L D ++ K RATY+ L+ G
Sbjct: 754 IYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 791
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 1/198 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A + ++ G+ P V+N+LI + G + A SLF M + PN
Sbjct: 332 KKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLF-PND 390
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I F G +D + G V Y SLI G K + ++E
Sbjct: 391 VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G+ P++ I ++ G C +L + G G N L+ C R
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510
Query: 300 VDELEEQLETLTKCNQSP 317
+ E + + + N P
Sbjct: 511 MAEANKLFGEMVEWNVIP 528
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 29/299 (9%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ A+H+F + + G++PD V+ +++ + D + A + M SS +
Sbjct: 192 RIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESS-GCDLSV 250
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIA-----AGFSVNVQTYESLIHGSLKARDFDSVD 234
TY+ FI G V W A I G +V TY +L+ G K +F++ +
Sbjct: 251 ATYNVFIRGLCKNQRV-----WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRK------LDRVKSFLKFLLGGGWKINENMAQ 288
EM+ G +PS + +++GL R+K D V KF G + +
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGL--RKKGNIGSAFDLVNKVKKF----GVAPSLFVYN 359
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C+ G++DE E + P + +S +I + +LD + +G+M
Sbjct: 360 ALINSMCKDGKLDEAESLFNNMGHKGLFPNDVT--YSILIDSFCKRGKLDVALHFLGKMT 417
Query: 349 KQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ G+ ++ C + A LF + I K Y L++GY + G
Sbjct: 418 EVGIKATVYPYSSLISGHCKLGKLRAAK--SLFDEMIANGLKPNVVIYTSLISGYCKEG 474
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 125/306 (40%), Gaps = 19/306 (6%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--P 177
K Q V A+ + + +G++ D + +L+ LC + A E+M E+ P
Sbjct: 262 KNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG-LCKVEEFEAGE--EMMNEMIEFGFVP 318
Query: 178 NSKTYDAFISGFSSLGNV----DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ + G GN+ D +NK +A V Y +LI+ K D
Sbjct: 319 SEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFV----YNALINSMCKDGKLDEA 374
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ + M G+ P+ +++ C R KLD FL + G K L+
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+C+LG++ + + + P V++ ++ +I Y L + M +G+S
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVI--YTSLISGYCKEGELHNAFRLYHEMTGKGIS 492
Query: 354 FKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD 411
+ ++ +C R A ++ LF + ++ + TY+ L+ G+ + G + +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANK--LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550
Query: 412 SVINEM 417
+++EM
Sbjct: 551 ELLDEM 556
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 5/199 (2%)
Query: 105 ESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
E CL Y LI K+ + A + M A P+ + + G++
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEK 661
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L ++++ E + N+ TY+ I GF LG + + I +G S + +Y ++I
Sbjct: 662 AIQLHDVLL--EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 719
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + D + +E M++ G+ P ++ G C +L + ++ G K
Sbjct: 720 YEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVK 779
Query: 282 INENMAQKLVKCYCELGRV 300
N L+ C + V
Sbjct: 780 PNRATYNSLIHGTCLMSSV 798
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ SM +G+ PD+ +N LI C +G++ A L + M+ KPN TY++ I
Sbjct: 731 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR-RGVKPNRATYNSLI 789
Query: 187 SGFSSLGNVDAMNKWYAANI 206
G + +V + +++ +
Sbjct: 790 HGTCLMSSVSSTADYFSCKL 809
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D +L+G + Y LI K+ + A V +M GI PD ++++I G
Sbjct: 667 DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRG 726
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D+ A+ L+E M+ + P++ Y+ I G G + + + G N TY
Sbjct: 727 DLKEAIKLWESML-NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 785
Query: 218 ESLIHGS 224
SLIHG+
Sbjct: 786 NSLIHGT 792
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 1/231 (0%)
Query: 90 QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
Q VL+ + +KG + L Y +I L K V A V M QGI PD+ V+ +L
Sbjct: 27 QKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTL 86
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I G++ A LF+ M + P+ Y A I G G + +K + + G
Sbjct: 87 IDGFCKLGNIQAAYKLFDEM-EKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRG 145
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ TY +LI G K+ + + + +M+ G+ P++ + +GLC ++D
Sbjct: 146 VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L + G G ++N LV C+ G + + + +E + P+ +
Sbjct: 206 ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTI 256
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M ++G++PD + +LI SG++ A SL MV S PN TY A
Sbjct: 134 ADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG-LTPNVVTYTALA 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G LG VD N+ G +N+ TY SL++G K+ + + EEM G+
Sbjct: 193 DGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMY 252
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +++ C ++ + L+ +L G + L+ +C G +++ E
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312
Query: 307 L 307
L
Sbjct: 313 L 313
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 12/170 (7%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + ME G+ PD+ F +L+ A +G++V A L M+ +P
Sbjct: 232 KSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLD-RGLQPTV 290
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ + A + G N TY SL+ + Y+
Sbjct: 291 ITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKG 350
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
M + G++P +++G C R + W +++ MA+K
Sbjct: 351 MCARGVMPDSNTYNILIKGHCKARNMKEA-----------WFLHKEMAEK 389
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 1/189 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M+ +G PD ++++I G++ L L + M + KPN TY++ I G
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEM-QMKGLKPNLYTYNSIILLLCKSG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD + I G + Y +LI G K + + + ++EM I+P
Sbjct: 60 KVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYT 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
V+ GLC K+ + G + +E L+ YC+ G +++ + +
Sbjct: 120 AVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179
Query: 314 NQSPEVLLH 322
+P V+ +
Sbjct: 180 GLTPNVVTY 188
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 6/256 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
DK LK N + Y+ LI K + A+ F M G+ P+ ++SLI A +G
Sbjct: 230 DKDLKPN---VISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAG 286
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ A L + M+ E N TY + G G ++ + + A AG + N+Q Y
Sbjct: 287 NLGEAFMLADEMLQ-EHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAY 345
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LIHG +K R D + EM I P I + ++ GLC+ KL+ K + +
Sbjct: 346 TALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKE 405
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G N + L+ Y + G E LE + + EV + F +I +
Sbjct: 406 SGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR--DLGTEVTVVTFCALIDGLCKRGLV 463
Query: 338 DDVEYSVGRMGKQGLS 353
+ Y GRM L
Sbjct: 464 QEAIYYFGRMPDHDLQ 479
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 1/211 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK+ + ++ +F M+ G +PD +N+LI + ++ A F M
Sbjct: 170 YNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREM- 228
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ KPN +Y I G + K++ G N TY SLI + KA +
Sbjct: 229 KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNL 288
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM+ + +I +L+GLC ++ + + + G N L
Sbjct: 289 GEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTAL 348
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
+ + ++ +D+ E + + + P++LL
Sbjct: 349 IHGHIKVRSMDKAMELFNEMREKDIKPDILL 379
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 1/172 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M GI P +N +I GD++TA SLFE M P+ TY+ I G+
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQM-KKMGLTPDIVTYNTLIDGYG 178
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+G +D + G +V TY +LI+ K + F+ EM + P++
Sbjct: 179 KIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI 238
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+++ LC + F + G NE L+ C+ G + E
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGE 290
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K N A+++ M G + F +LI G V A+ F M
Sbjct: 415 YTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRM- 473
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN Y A I G + K + + Y ++I G+LK +F
Sbjct: 474 PDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNF 533
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+MM +GI + ++ GL ++ + + FL ++G G +E + +L
Sbjct: 534 QEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRL 593
Query: 291 VKCYCELGRVD---ELEEQL--ETLTKCNQSPEV 319
++ + ELG +D EL+ +L + L N +P V
Sbjct: 594 LRKHYELGNIDEAIELQNELVEKGLIHGNSNPAV 627
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDV 159
G E + + LI K V A++ F M ++P+ AV+ +LI C C GD
Sbjct: 442 GTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGD- 500
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A LF+ M + P+ Y A I G GN + G +++ Y S
Sbjct: 501 --AKKLFDEM-QDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTS 557
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
L+ G + +F EM+ GIIP E LC R
Sbjct: 558 LVWGLSQCGQVQQARKFLAEMIGKGIIPD--------ETLCTR 592
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P VF++L + G + A F + ++ P +++ +AF+ S G D
Sbjct: 60 PGFGVFDALFSVLVELGMLEAAGQCF-LRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRD 118
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
++ + AG + V TY +I K D + +E+M +G+ P I +++G
Sbjct: 119 FFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDG 176
>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
gi|224028343|gb|ACN33247.1| unknown [Zea mays]
Length = 901
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 41/313 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L GK + A+ +F M A G+ PD+ FN+LI SG+ A LF MV
Sbjct: 267 YNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMV 326
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP++KTY+ ++ F+S+G+++ + K+Y AG + TY L
Sbjct: 327 -IRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRIL---------- 375
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
L+ LC R+ + + + ++ +L G ++E +
Sbjct: 376 -------------------------LQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVV 410
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+K Y +LG +D E + K + V FS I+ ++A ++ E+
Sbjct: 411 MKMYVDLGLLD---EAIAFFEKHCRGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGD 467
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
G + K + ++I +Y + YDR+ LF + TY+ L+ + G +
Sbjct: 468 G-NEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHR 526
Query: 410 LDSVINEMKFAEY 422
++ +MK A +
Sbjct: 527 AKKLLGKMKDAGF 539
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
GNE + EY +I G+ + +F SME G+ D +NSLI G A
Sbjct: 468 GNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRA 527
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L M + ++P +TY A I +S V + A+G NV Y LI
Sbjct: 528 KKLLGKMKDA-GFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILID 586
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG---LCARRKLDRVKSFLKFLLGGG 279
+ + + + GI P+ +L +++ + ++ + S + + GG
Sbjct: 587 MFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGP 646
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
I N ++ Y +L V E +E ++L + N + V
Sbjct: 647 DIIASN---AMLNLYAKLEMVTEAKEIFDSLRRNNHADAV 683
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TYDAF 185
A H+F S G + D +N +I A + SLFE M E P+ + TY++
Sbjct: 457 AEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESM--EESGVPSDECTYNSL 514
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I FS G K AGF +TY ++I + + EM + G+
Sbjct: 515 IQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGV 574
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ + +++ + + L G N + L+K Y + E ++
Sbjct: 575 EPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQD 634
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ + P+++ + ++ LYA
Sbjct: 635 LYSRMNDMDGGPDIIAS--NAMLNLYA 659
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 5/244 (2%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE+ + G Q+ + A+ +F +G+KP ++N+LI G V+ AL L
Sbjct: 327 DEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLM 386
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M S E P+ TY+ I+G +G V N A IA G+ ++ T+ +LI G K
Sbjct: 387 NDM-SKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCK 445
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D+ + M S G+ P + +L GLC K + V K ++ G N
Sbjct: 446 RLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIIT 505
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L++ C+ +V E + LE + P+ + F +I + + LD+ R
Sbjct: 506 YNILIESLCKARKVTEALDLLEEIRNRGLIPDPV--SFGTVISGFCNNGDLDEAYQLFRR 563
Query: 347 MGKQ 350
M +Q
Sbjct: 564 MEQQ 567
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 2/221 (0%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
LDS+ ++++++ L ++ K + V+E M KG + Y LI
Sbjct: 456 LDSMWSHGVTPDVITYNSILNGLCKAA--KPEDVMETFKMIMEKGCLPNIITYNILIESL 513
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V A+ + + +G+ PD F ++I +GD+ A LF M
Sbjct: 514 CKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHT 573
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I+ FS ++D K + G + TY +I G K + +S F
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLL 633
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ + +G +PS+ +V+ LC + ++ + ++ G
Sbjct: 634 KEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTG 674
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 137 QGIKPDSAVFNSLICACLC--------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
G+ P+ FN I LC + VV A + MV+ + +P+ TY+ I G
Sbjct: 245 NGVCPNLFTFNIFIQG-LCRKGVLEGANSKVVEAENYLHKMVN-KGLEPDDFTYNTIIYG 302
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+S +G + ++ GF + TY SLI G + D D +EE + G+ PS
Sbjct: 303 YSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPS 362
Query: 249 IPILEKVLEGL 259
I + +++GL
Sbjct: 363 IVLYNTLIKGL 373
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 115/311 (36%), Gaps = 23/311 (7%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKVQ A+ VF M+ +P +N+++ + G A ++ + + E P+
Sbjct: 90 GKVQE---AVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVY-LRMKHEGIAPD 145
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ I F A + + G +N Y ++I G + +
Sbjct: 146 VCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFN 205
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ LGI P I K++ LC + L + L +L G N ++ C G
Sbjct: 206 KMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKG 265
Query: 299 -------RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+V E E L + P+ ++ II Y+ ++ D R+ K
Sbjct: 266 VLEGANSKVVEAENYLHKMVNKGLEPDDFT--YNTIIYGYSKVGKIQDAS----RILKDA 319
Query: 352 LSFKSAEDVEMVICSYFRCAAYD-----RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
FK E CS D L LF + + K Y+ L+ G + GL
Sbjct: 320 -KFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGL 378
Query: 407 SGKLDSVINEM 417
K ++N+M
Sbjct: 379 VLKALQLMNDM 389
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 123/288 (42%), Gaps = 3/288 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
T M G+KPD + +N++I + G+ AL L M S KPN TY+ ++G
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSS-IKPNLITYNTLVAGLF 635
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G V+ ++AGFS + T+ ++ ++R D + +E MM+ G+ I
Sbjct: 636 GTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +L+ LC + L+ +LG G + L+ +C+ +D +
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
N SP + F+ ++ R+ + + M K GL + + +
Sbjct: 756 LHQNISPNIAT--FNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQS 813
Query: 371 AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + L+ + + + + +TY+ L++ + +AG+ + + +M+
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 42/306 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A V ME + I P+ F+S+I + G ++ + ++ M+
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKRMM 440
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA--------------MNKWYAANI---------- 206
PN TY I GF DA +NK+ ++
Sbjct: 441 KERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKI 500
Query: 207 -----------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+G S++ Y +LI G KA D + +F +E+M ++P +
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC K KSFL + G K +++ ++ +C G + + L + +
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI 620
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P L+ + + + L+ + ++ +Y + M G S S ++ C+ R
Sbjct: 621 KPN-LITYNTLVAGLFG-TGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQA----CSQSRR 674
Query: 376 LDLFLD 381
LD+ LD
Sbjct: 675 LDVILD 680
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 42/320 (13%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ P A+ V M AQG+ D +N+L+ +G V A + ++M PN TY
Sbjct: 184 DTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM-KEAGVDPNVATY 242
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA----------RDFDS 232
FI + V+ Y + G ++V T +L+ G + R+ D
Sbjct: 243 TPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302
Query: 233 VD-------------------------RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
V EM+S G++ + +++ L + K D
Sbjct: 303 VGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE 362
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
VK L+F L N L+ C+ VDE E+ L + + + SP V+ FS +
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVT--FSSV 420
Query: 328 IRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG 385
I + LD EY RM K+ + +I +F+ D L+++ D +
Sbjct: 421 INGFVKRGLLDKATEYK--RMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCE 478
Query: 386 SYKLRRATYDFLVAGYRRAG 405
K+ + D LV G R+ G
Sbjct: 479 GVKVNKFIVDSLVNGLRQNG 498
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 3/284 (1%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ P+ + LI A LC V + + + PN T+ + I+GF G +D
Sbjct: 375 LSPNGVTYTVLIDA-LCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
++ G + NV TY +LI G K + D+ Y +M+ G+ + I++ ++ G
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L K++ + K G G ++ L+ + G + + + L N P+
Sbjct: 494 LRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
++ ++ I + + + + + M GL + M++ + L L
Sbjct: 554 AVV--YNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+ S K TY+ LVAG G K ++NEM A +
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGF 655
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 6/227 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA +VLE L + + + LI K ++ A + M Q I P+ A F
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFN---ALILGHCKSSHLDNAFATYAQMLHQNISPNIATF 767
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAAN 205
N+L+ G + A ++ I + +PN+ TYD +G N V+AM + Y
Sbjct: 768 NTLLGGLESVGRIGEAGTVL-IEMEKSGLEPNNLTYDILATGHGKQSNKVEAM-RLYCEM 825
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ GF V TY +LI KA +++M G+ P+ + ++ G R
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
VK LK + G+ ++ + + + + G + + L+ L +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNLYR 932
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 16/317 (5%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
D+ D+++ S+ F+++ALI+ K + L +KM N D Y
Sbjct: 351 DAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL---FNKMTSKN-IIPDVYTF 406
Query: 114 LIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
I + G K N+ A +V M Q IKPD ++SL+ +V A S+F M S
Sbjct: 407 SILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM-S 465
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
N ++Y+ I+GF + VD K + +V TY SLI G K+
Sbjct: 466 HRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRIS 525
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+EM G P I +L+ LC + +D+ + L L G G + + N LV
Sbjct: 526 YALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
K C+ G++++ + E L + +V + ++ +I+ + D+ + +M + G
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDV--YAYTVMIQGFCDKGLFDEALALLSKMEENG 643
Query: 352 LSFKSAEDVEMVICSYF 368
A+ E++I S F
Sbjct: 644 -CIPDAKTYEIIILSLF 659
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + +A+ + M +G +PD +NS++ A V A++L +
Sbjct: 511 YSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLT-KL 569
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY + G G ++ K + + G++++V Y +I G F
Sbjct: 570 KGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLF 629
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
D +M G IP E ++ L + + D + L+ ++ G
Sbjct: 630 DEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRG 678
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 10/230 (4%)
Query: 87 KKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
K ++ +E+ K+LK + L + L G++ A+H + A G D
Sbjct: 241 KSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQ---ALHFHDKVIAMGFHLD 297
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ +LI G+ AL L + +P+ Y+ I G +V+ Y
Sbjct: 298 QVSYGTLINGLCKVGETKAALELLR-RNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLY 356
Query: 203 AANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ ++ +V TY +LI G + + D++D F +M S IIP + +++G C
Sbjct: 357 SEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLF-NKMTSKNIIPDVYTFSILVDGFCK 415
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+ K+ L ++ K + L+ YC + V++ E T++
Sbjct: 416 DGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMS 465
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 5/191 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ +LI L S + LE + +G + + Y ++ K +V A+ + T
Sbjct: 510 TYSSLIDGLCKSG--RISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLT 567
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++ QGI+PD + L+ SG + A +FE ++ + Y + Y I GF
Sbjct: 568 KLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLV-KGYNLDVYAYTVMIQGFCDK 626
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G D + G + +TYE +I + + D ++ EM+ G++ + +
Sbjct: 627 GLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLL--VALT 684
Query: 253 EKVLEGLCARR 263
+ ++ + RR
Sbjct: 685 DDLVASILVRR 695
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 123/288 (42%), Gaps = 3/288 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
T M G+KPD + +N++I + G+ AL L M S KPN TY+ ++G
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSS-IKPNLITYNTLVAGLF 635
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G V+ ++AGFS + T+ ++ ++R D + +E MM+ G+ I
Sbjct: 636 GTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +L+ LC + L+ +LG G + L+ +C+ +D +
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
N SP + F+ ++ R+ + + M K GL + + +
Sbjct: 756 LHQNISPNIAT--FNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQS 813
Query: 371 AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + L+ + + + + +TY+ L++ + +AG+ + + +M+
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 42/329 (12%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LIA +V + P A+ V M AQG+ D +N+L+ +G V A + ++M
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM-KEA 233
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA------ 227
PN TY FI + V+ Y + G ++V T +L+ G +
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293
Query: 228 ----RDFDSVD-------------------------RFYEEMMSLGIIPSIPILEKVLEG 258
R+ D V EM+S G++ + +++
Sbjct: 294 YALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDW 353
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L + K D VK L+F L N L+ C+ VDE E+ L + + + SP
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 319 VLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RL 376
V+ FS +I + LD EY RM K+ + +I +F+ D L
Sbjct: 414 VVT--FSSVINGFVKRGLLDKATEYK--RMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469
Query: 377 DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+++ D + K+ + D LV G R+ G
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNG 498
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 42/306 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A V ME + I P+ F+S+I + G ++ + ++ M+
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKRMM 440
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA--------------MNKWYAANI---------- 206
PN TY I GF DA +NK+ ++
Sbjct: 441 KERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKI 500
Query: 207 -----------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+G S++ Y +LI G KA D + +F +E+M ++P +
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC K KSFL + G K +++ ++ +C G + + L + +
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI 620
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P L+ + + + L+ + ++ +Y + M G S S ++ C+ R
Sbjct: 621 KPN-LITYNTLVAGLFG-TGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQA----CSQSRR 674
Query: 376 LDLFLD 381
LD+ LD
Sbjct: 675 LDVILD 680
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 3/284 (1%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ P+ + LI A LC V + + + PN T+ + I+GF G +D
Sbjct: 375 LSPNGVTYTVLIDA-LCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
++ G + NV TY +LI G K + D+ Y +M+ G+ + I++ ++ G
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L K++ + K G G ++ L+ + G + + + L N P+
Sbjct: 494 LRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
++ ++ I + + + + + M GL + M++ + L L
Sbjct: 554 AVV--YNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+ S K TY+ LVAG G K ++NEM A +
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGF 655
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA +VLE L + + + LI K ++ A + M Q I P+ A F
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFN---ALILGHCKSSHLDNAFATYAQMLHQNISPNIATF 767
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAAN 205
N+L+ G + A ++ I + +PN+ TYD +G N V+AM + Y
Sbjct: 768 NTLLGGLESVGRIGEAGTVL-IEMEKSGLEPNNLTYDILATGHGKQSNKVEAM-RLYCEM 825
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ GF V TY +LI KA +++M G+ P+
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPT 868
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L GK N AM ++ M +G P + +N+LI +G + A LF+ M
Sbjct: 802 YDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDM- 860
Query: 171 SSEEYKPNSKTYDAFISGFSSL 192
P S TYD +SG+ L
Sbjct: 861 QKRGVHPTSCTYDILVSGWYDL 882
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+A F +LI G + AL LF+ M+ E ++PN TY
Sbjct: 122 FAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG-EGFQPNVVTYGTL 180
Query: 186 ISGFSSLGNVDAMNKW-----------------------------------YAANIAAGF 210
I+G +GN +A + ++ + G
Sbjct: 181 INGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGI 240
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S ++ TY SLIH ++ V +M++ I+P + I V++ LC K+
Sbjct: 241 SPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 300
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ ++ G + N L+ +C +DE + +T+ +P V+ ++ +I
Sbjct: 301 VVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVI--SYNTLING 358
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y R+D Y M ++ L
Sbjct: 359 YCKIQRMDKATYLFEEMCQKEL 380
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 2/193 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M +G++P+ +N+L+ ++ A+ +F+ MV + Y PN +Y+ I
Sbjct: 298 AHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG-YAPNVISYNTLI 356
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +D + N TY +L+H R D++ F+E M++ G I
Sbjct: 357 NGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHE-MVAHGQI 415
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L+ LC + LD + LK + G + + ++ C G ++ +
Sbjct: 416 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 475
Query: 307 LETLTKCNQSPEV 319
L+ P V
Sbjct: 476 FSNLSSKGLRPNV 488
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD +F++++ A G + A + ++M+ +PN TY+A
Sbjct: 262 HVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMII-RGVEPNVVTYNAL 320
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G +D K + + G++ NV +Y +LI+G K + D +EEM +
Sbjct: 321 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 380
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP+ + L C +L + ++ G + + L+ C+ +DE
Sbjct: 381 IPNT-VTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439
Query: 306 QLETLTKCNQSPEVLLH 322
L+T+ N P++ ++
Sbjct: 440 LLKTIEGSNMDPDIQIY 456
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 113/299 (37%), Gaps = 3/299 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + P + M++ GI PD N LI + + A S+ ++ ++P+
Sbjct: 80 AKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLG-HQPD 138
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ T+ I G G + + I GF NV TY +LI+G K + ++ R
Sbjct: 139 TATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR 198
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M P + + +++ LC R++ + ++G G + L+ C L
Sbjct: 199 SMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLC 258
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
+ L + P+V++ FS ++ ++ + V M +G+
Sbjct: 259 EWKHVTTLLNQMINSKIMPDVVI--FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVT 316
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ + + + +F + Y +Y+ L+ GY + K + EM
Sbjct: 317 YNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEM 375
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++E + PD ++ +I +G++ A +F + SS+ +PN +TY I
Sbjct: 437 AMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL-SSKGLRPNVRTYTIMI 495
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G +D NK + G S + TY ++ G L+ ++ + +EM++ G
Sbjct: 496 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 555
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL 272
+ ++E LC + VK L
Sbjct: 556 ADVSTTTLLVEMLCDDKLDQSVKQIL 581
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G++Q+ A+ +F M A G PD A + L+ + A++L + + P+
Sbjct: 397 GRLQD---AIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKT-IEGSNMDPD 452
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y I G G ++A ++ + G NV+TY +I+G + D ++ +
Sbjct: 453 IQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFM 512
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G P + +GL ++ R L+ +L G+ + + LV+ C+
Sbjct: 513 EMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD-- 570
Query: 299 RVDELEEQLETL 310
D+L++ ++ +
Sbjct: 571 --DKLDQSVKQI 580
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q + A ++F M + + P++ +N+L+ C G + A++LF MV
Sbjct: 352 YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV-GRLQDAIALFHEMV 410
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY + ++D + ++Q Y +I G +A +
Sbjct: 411 AHGQI-PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 469
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ + + S G+ P++ ++ GLC R LD + G G
Sbjct: 470 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 518
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 10/326 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I K +++ A +F ME +GIKPD +NSLI +CLC
Sbjct: 244 LKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI-SCLC 302
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+++ I F+ G + K + I N+
Sbjct: 303 NYGRWSDASRLLSDMIE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 361
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D + + M+S +P + +++G C ++++ +
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 481
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
L L EY + K + + + +C + D DLF K
Sbjct: 482 LEKALVVFEYL--QKSKMEPNIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKGVKPNVI 537
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
Y +++G+ R GL + D++ EMK
Sbjct: 538 IYTTMISGFCRKGLKEEADALFREMK 563
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 112/262 (42%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + +++ LI L + + L +D+M+ +G + L
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVAL---IDRMVARGCQPDLFT 223
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ + ++N++I + A LF M
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM- 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ KP+ TY++ IS + G ++ + I + NV T+ SLI K
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ ++EM+ I P+I ++ G C +LD + ++ + L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQ 424
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 5/232 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y+ L+ + +P A+ V M G +PD +SL+ C G ++ A++L + M
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQM 177
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V YKP++ T++ I G +A G ++ TY ++++G K D
Sbjct: 178 VEMG-YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 236
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++M I ++ I +++GLC + +D + G K +
Sbjct: 237 IDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNS 296
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
L+ C C GR + L + + +P V+ F+ +I +A +L + E
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPNVVT--FNSLIDAFAKEGKLIEAE 346
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A +F M + G+ PD ++ L+ G + AL +FE +
Sbjct: 434 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 493
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY+ I G G V+ + + G NV Y ++I G +
Sbjct: 494 KSK-MEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK 552
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + EM G +P
Sbjct: 553 EEADALFREMKEDGTLP 569
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A V ME +G+ D+ + LI G + A + MV
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY A G G+V A N+ + G +N+ TY SLI+G KA +
Sbjct: 453 Q-KRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R +M G+ P + ++ LC ++LDR S L+ +L G K L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+ +C GRV+ + LE + + N P
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHP 598
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 1/211 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K N+ AM M+ G+KPD + ++I A S ++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A SL + M+ + KP TY+ ++GF G V+ + + N TY SL+
Sbjct: 549 AHSLLQEMLD-KGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ S Y+ M+S ++P+ +++G C R + F ++ G++
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ + L++ + + E E + K
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRK 698
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL V A+ V M G+ D+AVF +++ GD+ A + F+ M
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM- 381
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY A I+G G + + G V+ TY LI G K
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M+ + P++ + +GLC + + L + G ++N L
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G +++ + + + P+V + ++ II S LD + M +
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDV--YTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 351 GL 352
G+
Sbjct: 560 GI 561
>gi|255660944|gb|ACU25641.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 5/251 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLE--WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAM 128
WD + L S KA +V E KM + G + Y L + + A
Sbjct: 76 LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVILRRGRYMMAK 135
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M ++GI+P FN +I SG V T+ F M S E P+ TY+ I+G
Sbjct: 136 RYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETSNRFFXDM-XSREITPDVVTYNTMING 194
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + ++ K++ V TY +LI G D EEM GI P+
Sbjct: 195 YYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALXLXEEMKXFGIKPN 254
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQL 307
+L GLC K+ +S LK ++ +N + +L+ C++G +D + J
Sbjct: 255 AITYSTLLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISGQCKVGDLDAAADVJ 314
Query: 308 ETLTKCNQSPE 318
+ + + + E
Sbjct: 315 KAMIRLSIPTE 325
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 139/333 (41%), Gaps = 18/333 (5%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME G+ +++L L
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVILRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M+S E +P T++ I GF G V+ N+++ + + +V T
Sbjct: 129 GRYMMAKRYFNKMLS-EGIEPTRHTFNVMIWGFFLSGKVETSNRFFXDMXSREITPDVVT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++I+G + + ++++ EM I P++ +++G + ++D + +
Sbjct: 188 YNTMINGYYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALXLXEEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP---EVLLHFFSGIIRLYAL 333
G K N L+ C+ ++ E L+ + +P + + SG ++ L
Sbjct: 248 XFGIKPNAITYSTLLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISGQCKVGDL 307
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI---------K 384
D DV ++ R+ A ++I Y + YD+ LD + +
Sbjct: 308 -DAAADVJKAMIRLSIP----TEAGHYGVLIEXYCKAGQYDKAVKLLDKVIEKDIISRPQ 362
Query: 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + + Y+ L+ G + K ++++ Z+
Sbjct: 363 NTLXMEPSAYNXLIEYLCNNGQTAKAETLVRZL 395
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 3/226 (1%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+H+ + + P+ + ++I G V A +LF M+ +PN TY I
Sbjct: 188 LHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVID 246
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G VD + I G + TY LIHG L + V R EEM + G+ P
Sbjct: 247 GLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKP 306
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L LC + + F ++ G K N + L+ Y G + E+ + L
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP+ H F+ I YA +D+ + +M +QGLS
Sbjct: 367 NLMVENGLSPD--HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M QGI+PD FN+++C G V+ A L ++M +P+ +Y I
Sbjct: 467 AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM-ERVGTRPDVISYTTLI 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G +D K ++ G + TY +L+HG +A D + EM+ GI
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKI 282
P + +L GL R+ K ++ G W I
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 6/228 (2%)
Query: 128 MH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH + M G+ PD +FN + A + A+ +F M + P+ + A I
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKM-KQQGLSPDVVNFGALI 420
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + + G + N+ + SL++G ++ FY EM++ GI
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIR 480
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L LC + ++ + + + + G + + L+ +C +GR+DE +
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKS 540
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR-MGKQGLS 353
L+ + P+ ++ ++ Y + R+DD Y V R M + G++
Sbjct: 541 LDVMLSVGLKPDEWT--YNTLLHGYCRAGRIDDA-YGVFREMLRNGIT 585
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 5/228 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A ++F M +GI+P+ + ++I LC VV A +F+ M+ + KP++ TY+
Sbjct: 222 AYNLFLEMMDRGIQPNVVTYTTVIDG-LCKAQVVDRAEGVFQQMID-KGVKPDNDTYNCL 279
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G+ S+G + + A G + TY SL++ F++ M+ GI
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGI 339
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ I ++ G + L + L ++ G + ++ + Y + +DE
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMH 399
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP+V+ F +I R+DD +M +G++
Sbjct: 400 IFNKMKQQGLSPDVV--NFGALIDALCKLGRVDDAVLKFNQMMNEGVA 445
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AMH+F M+ QG+ PD F +LI A G V A+ F M++ E PN +++ +
Sbjct: 397 AMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMN-EGVAPNIFVFNSLV 455
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ + ++Y + G +V + +++ R + M +G
Sbjct: 456 YGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR 515
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G C ++D L +L G K +E L+ YC GR+D+
Sbjct: 516 PDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575
Query: 307 LETLTKCNQSPEVLLH 322
+ + +P V+ +
Sbjct: 576 FREMLRNGITPGVVTY 591
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 38/291 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F SM +GIKP+ A++ LI G + L +MV + P+ ++
Sbjct: 327 ARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENG-LSPDHHIFNIIF 385
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ ++ +D + G S +V + +LI K D + +MM+ G+
Sbjct: 386 TAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVA 445
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I + ++ GLC K ++ K F +L G + + ++ C G+V + +
Sbjct: 446 PNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRL 505
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
++ + + P+V+ ++ +I + L R+D+ S+ M GL
Sbjct: 506 IDLMERVGTRPDVI--SYTTLIGGHCLVGRIDEAAKSLDVMLSVGL-------------- 549
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
K TY+ L+ GY RAG V EM
Sbjct: 550 ---------------------KPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 3/256 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L+ M +G + + Y +I K Q V A VF M +G+KPD+ +N LI L
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + E M S+ KP+ TY + ++ + G ++ + I G NV
Sbjct: 287 GKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAI 345
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LIHG + M+ G+ P I + + +D +
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G + L+ C+LGRVD+ + + +P + + F+ ++ D+
Sbjct: 406 QQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV--FNSLVYGLCTVDK 463
Query: 337 LDDVEYSVGRMGKQGL 352
+ + M QG+
Sbjct: 464 WEKAKEFYFEMLNQGI 479
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 4/210 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C + G+V A + ME G +PD + +LI G + A ++M+S
Sbjct: 491 CNLCTKGQVMK---AQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSV 547
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KP+ TY+ + G+ G +D + + G + V TY +++HG R F
Sbjct: 548 G-LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSE 606
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
Y M++ G +I I +L GL +D + L +++ ++
Sbjct: 607 AKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIG 666
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ GR ++ T++ P+V +
Sbjct: 667 ALFKSGRNEDAMHLFATISSYGLVPDVFTY 696
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 88 KAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
K Q++ RL +++ G + Y LI V + A M + G+KPD
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWT 555
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+L+ +G + A +F M+ + P TY + G + + Y
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRN-GITPGVVTYSTILHGLFTTRRFSEAKELYLNM 614
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I +G N+ Y +++G K D + ++ + S
Sbjct: 615 ITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 140/316 (44%), Gaps = 49/316 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK + AM +F+ M G +PD++V+NSLI A L S D +V AL F
Sbjct: 120 YSKLISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYF 179
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M ++E KPN TY+ + F+ +
Sbjct: 180 EKMKTTERCKPNIVTYNILLRAFA-----------------------------------Q 204
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
ARD + V+ ++++ + P I V++G + ++S L + K++
Sbjct: 205 ARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDLIT 264
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA---LSDRLDDVEYS 343
L+ Y + + D++E+ ++L++ + P L F+ +I Y L D+ ++V +
Sbjct: 265 YNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPT--LPTFNSMILNYGKARLKDKAENVFQN 322
Query: 344 VGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYR 402
+ MG SF + E +I Y C + ++LF I+ ++ +T + ++ Y
Sbjct: 323 MTDMGYTP-SFVTHES---LIHMYGLCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVYC 378
Query: 403 RAGLSGKLDSVINEMK 418
GL + DS+ K
Sbjct: 379 INGLQQEADSLFTRAK 394
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A V ME +G+ D+ + LI G + A + MV
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY A G G+V A N+ + G +N+ TY SLI+G KA +
Sbjct: 453 Q-KRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R +M G+ P + ++ LC ++LDR S L+ +L G K L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+ +C GRV+ + LE + + N P
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHP 598
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 1/211 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K N+ AM M+ G+KPD + ++I A S ++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A SL + M+ + KP TY+ ++GF G V+ + + N TY SL+
Sbjct: 549 AHSLLQEMLD-KGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ S Y+ M+S ++P+ +++G C R + F ++ G++
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ + L++ + + E E + K
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRK 698
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL V A+ V M G+ D+AVF +++ GD+ A + F+ M
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM- 381
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY A I+G G + + G V+ TY LI G K
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M+ + P++ + +GLC + + L + G ++N L
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G +++ + + + P+V + ++ II S LD + M +
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDV--YTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 351 GL 352
G+
Sbjct: 560 GI 561
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 123/288 (42%), Gaps = 3/288 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
T M G+KPD + +N++I + G+ AL L M S KPN TY+ ++G
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSS-IKPNLITYNTLVAGLF 635
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G V+ ++AGFS + T+ ++ ++R D + +E MM+ G+ I
Sbjct: 636 GTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADIT 695
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +L+ LC + L+ +LG G + L+ +C+ +D +
Sbjct: 696 VYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQM 755
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
N SP + F+ ++ R+ + + M K GL + + +
Sbjct: 756 LHQNISPNIAT--FNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQS 813
Query: 371 AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + L+ + + + + +TY+ L++ + +AG+ + + +M+
Sbjct: 814 NKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQ 861
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 129/329 (39%), Gaps = 42/329 (12%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LIA +V + P A+ V M AQG+ D +N+L+ +G V A + ++M
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMM-KEA 233
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA------ 227
PN TY FI + V+ Y + G ++V T +L+ G +
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293
Query: 228 ----RDFDSVD-------------------------RFYEEMMSLGIIPSIPILEKVLEG 258
R+ D V EM+S G++ + +++
Sbjct: 294 YALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDW 353
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L + K D VK L+F L N L+ C+ VDE E+ L + + + SP
Sbjct: 354 LGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 319 VLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RL 376
V+ FS +I + LD EY RM K+ + +I +F+ D L
Sbjct: 414 VVT--FSSVINGFVKRGLLDKATEYK--RMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469
Query: 377 DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+++ D + K+ + D LV G R+ G
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNG 498
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 42/306 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A V ME + I P+ F+S+I + G ++ + ++ M+
Sbjct: 382 YTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKRMM 440
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA--------------MNKWYAANI---------- 206
PN TY I GF DA +NK+ ++
Sbjct: 441 KERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKI 500
Query: 207 -----------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+G S++ Y +LI G KA D + +F +E+M ++P +
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC K KSFL + G K +++ ++ +C G + + L + +
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSI 620
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P L+ + + + L+ + ++ +Y + M G S S ++ C+ R
Sbjct: 621 KPN-LITYNTLVAGLFG-TGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQA----CSQSRR 674
Query: 376 LDLFLD 381
LD+ LD
Sbjct: 675 LDVILD 680
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 3/284 (1%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ P+ + LI A LC V + + + PN T+ + I+GF G +D
Sbjct: 375 LSPNGVTYTVLIDA-LCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
++ G + NV TY +LI G K + D+ Y +M+ G+ + I++ ++ G
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L K++ + K G G ++ L+ + G + + + L N P+
Sbjct: 494 LRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
++ ++ I + + + + + M GL + M++ + L L
Sbjct: 554 AVV--YNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+ S K TY+ LVAG G K ++NEM A +
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGF 655
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 6/227 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA +VLE L + + + LI K ++ A + M Q I P+ A F
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFN---ALILGHCKSSHLDNAFATYAQMLHQNISPNIATF 767
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAAN 205
N+L+ G + A ++ I + +PN+ TYD +G N V+AM + Y
Sbjct: 768 NTLLGGLESVGRIGEAGTVL-IEMEKSGLEPNNLTYDILATGHGKQSNKVEAM-RLYCEM 825
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ GF V TY +LI KA +++M G+ P+ + ++ G R
Sbjct: 826 VGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNG 885
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
VK LK + G+ ++ + + + + G + + L+ L +
Sbjct: 886 TEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNLYR 932
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ S KV+N+ A F M ++G++PD +N+ ICA L A L E+M+
Sbjct: 451 YTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMM 510
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y P++ TY+ I G GN+ + ++ G + TY LIH +
Sbjct: 511 LKGIY-PDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLL 569
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ M+S G+ PS+ ++ C R L + + +L G + NE L
Sbjct: 570 REARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL 629
Query: 291 VKCYCELGRV 300
+ C GR
Sbjct: 630 IHALCMTGRT 639
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 3/179 (1%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+S F+++ LIT+L + L+ ++ +G + Y +I K + A
Sbjct: 306 ASSFTYNPLITALLERGFVRKAEALQMEMEN--EGIMPTVVTYNAIIHGLLKCEQAEAAQ 363
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M A G+ PD +NSL+ +G++ AL L + + P TY+ I G
Sbjct: 364 VKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAG-LAPTVLTYNTLIDG 422
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ LG++ + + G +V TY L++GS K R+ F++EM+S G+ P
Sbjct: 423 YCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQP 481
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 2/203 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+ML KG + Y I + + P A + M +GI PD+ +N +I
Sbjct: 471 FDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCK 530
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G++ A L MV S+ +P+ TY I G + K ++ G +V
Sbjct: 531 TGNLKDAKRLKTKMV-SDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVV 589
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY L+H + + S ++ +M+ +GI P+ ++ LC + +
Sbjct: 590 TYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEM 649
Query: 276 LGGGWKINENMAQKLVKCYCELG 298
L G N+ L+ C G
Sbjct: 650 LERGLAPNKYTYTLLIDGNCREG 672
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A + M + G++P + L+ C G++ +A F M+
Sbjct: 556 YTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKML 615
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN TY+ I G + + + G + N TY LI G+ + ++
Sbjct: 616 DVG-IEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNW 674
Query: 231 DSVDRFYEEMMSLGIIP 247
R Y EM GI P
Sbjct: 675 ADAIRLYFEMHQNGIPP 691
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +GI P +N++I L A F M + P+ TY++ ++ + G
Sbjct: 334 MENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEM-RAMGLLPDVITYNSLLNRYCKAG 392
Query: 194 NV-DAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
N+ +A+ W ++ AG + V TY +LI G + D R EEM+ G P +
Sbjct: 393 NLKEAL--WLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCT 450
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ G R L + F +L G +
Sbjct: 451 YTILMNGSRKVRNLAMAREFFDEMLSKGLQ 480
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+A G ++N A+ + SM K S +N LI A L G V A +L ++ + +E
Sbjct: 283 FLAREGHLEN---AVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKAEAL-QMEMENE 337
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P TY+A I G +A +A A G +V TY SL++ KA +
Sbjct: 338 GIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEA 397
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLC 260
++ G+ P++ +++G C
Sbjct: 398 LWLLGDLRRAGLAPTVLTYNTLIDGYC 424
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 105 ESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+ CL + Y L+ S V ++ F M ++G++PD +N+ ICA + GD+
Sbjct: 436 QGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISK 495
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ L E+++ E ++ TY+ I G GN+ + I+ G + TY LI
Sbjct: 496 SFQLREVIML-EGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLI 554
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
H + +F+ +M+S G+ PS ++ C R L + + +L G +
Sbjct: 555 HAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVE 614
Query: 282 INENMAQKLVKCYCELGRV 300
NE L+ C +GR
Sbjct: 615 PNEITYNVLIHALCRMGRT 633
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
ML+G S Y LI K N+ A + M + G++PD + LI A G +
Sbjct: 504 MLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFL 563
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A F M+S + P++ TY I + GN+ + W+ + G N TY
Sbjct: 564 REARKFFNDMIS-DGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 622
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
LIH + R + EM+ G++P+
Sbjct: 623 LIHALCRMGRTQLAYRHFYEMLERGLVPN 651
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
+S F+++ LIT L + K V + +L+ +G + Y +I + + A
Sbjct: 300 ASSFTYNPLITGLLARGFVKK--VDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQ 357
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
F M A G+ PD +NSL+ +G+ AL LF + + P TY+ I G
Sbjct: 358 AKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAG-LAPTVLTYNILIDG 416
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ LG+++ + + G +V TY L+ GS F++EM+S G+ P
Sbjct: 417 YCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRP 475
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 8/194 (4%)
Query: 130 VFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ MEA+G P+ +N +I G + A L E M S+ K +S TY+ I+
Sbjct: 253 LLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSK--KASSFTYNPLIT 310
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G + G V ++ G V TY ++IHG L++ ++ + EM ++G++P
Sbjct: 311 GLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLP 370
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKF--LLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ +L G C + ++ ++ L F L G L+ YC LG ++E
Sbjct: 371 DVITYNSLLNGYC--KAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARR 428
Query: 306 QLETLTKCNQSPEV 319
E + + P+V
Sbjct: 429 LKEEMVEQGCLPDV 442
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A F M + G+ P + + +I A G++ +A F M+
Sbjct: 550 YTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKML 609
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
E +PN TY+ I +G + + + G N TY LI G L
Sbjct: 610 E-EGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDGKL 663
>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
Length = 390
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M A G+ PD +++LI +G V AL + ++M+ E +PN+ TY + + + G
Sbjct: 1 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLE-EGCQPNAHTYTPIVHAYCTGG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + IA+GF+ + TY L+ K F+ VD EE + G P +
Sbjct: 60 RIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYS 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENM----------------AQKLVKCYCEL 297
++GLC ++D+ + + +L G + +E A++L++C EL
Sbjct: 120 SYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAEL 179
Query: 298 G 298
G
Sbjct: 180 G 180
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI+ V A+ V M +G +P++ + ++ A G + A L M+
Sbjct: 13 YSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMI 72
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S + P++ TY+ + +G + ++ + A G++ +V TY S + G KA
Sbjct: 73 ASG-FAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRI 131
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
D ++M+S G+ PS L +L+G+C K L+ GW N
Sbjct: 132 DKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDAN 184
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+A G + +V TY +LI G A + M+ G P+ ++ C ++
Sbjct: 2 VANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRI 61
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--F 323
K L ++ G+ + LV+ C++G +E++ LE T +P+V+ + +
Sbjct: 62 HEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSY 121
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
G+ + + R+D V +M GL
Sbjct: 122 MDGLCK----AGRIDKSFALVDKMLSNGL 146
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+FT M +GI P+S FN ++ + G + AL L S+E+ TY+ I
Sbjct: 207 LFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLR----SKEFVATVITYNTLIRHL 262
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G + + I G + N TY +I + F + + + PS
Sbjct: 263 SISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSA 322
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ ++ GL L ++ + + +LG G+ I + Q+L+K C+ G +E
Sbjct: 323 FL--SIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVE 375
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G+ P + ++ GLC+ ++ L +L G + N + +V YC GR
Sbjct: 1 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 60
Query: 300 VDELEEQLETLTKCNQSP 317
+ E + L T+ +P
Sbjct: 61 IHEAKRLLNTMIASGFAP 78
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 10/263 (3%)
Query: 34 STSVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQL 91
+ +V++ N L+ L + S L+ + F+ F+++ LI + + KKA
Sbjct: 251 AMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALE 310
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
V E + KG + Y LI + + V +F +GI+PD ++N+LI
Sbjct: 311 VFE---EMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALIN 367
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ GD+ A +EIM E+ + P+ TY+ + GF LG +D G
Sbjct: 368 SHCTGGDMERA---YEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRG 424
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
++ +Y +LI G D R +EMM G P++ +++GLC R+ D +
Sbjct: 425 IQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAE 484
Query: 270 SFLKFLLGGGWKINENMAQKLVK 292
+ +K ++ G +++ L++
Sbjct: 485 NLMKEMVAKGITPDDSTYISLIE 507
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ V M E GI PD + +LI G + A+ +F+ M++ E P
Sbjct: 161 GRVQA---ALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAP 217
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS-LKARDFDSVDRF 236
++ Y+A I G+ +G +D ++ + G ++ V TY L+H + AR D+
Sbjct: 218 SAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAY-AV 276
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EEM G P + ++ G C + + + G + L+ +
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSR 336
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
G+V E + K P+V+++
Sbjct: 337 KGQVQETDRLFNVAVKKGIRPDVVMY 362
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 97/244 (39%), Gaps = 5/244 (2%)
Query: 98 DKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+ML E Y LI V + A+ M +GI A +N L+ A
Sbjct: 207 DEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFM 266
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
A ++ E M + P+ TY+ I+G+ GN + + G
Sbjct: 267 DARASDAYAVLEEM-QKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAV 325
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI+ + DR + + GI P + + ++ C ++R + +
Sbjct: 326 TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
++ L++ +C LGR+DE ++ +TK P+++ ++ +I Y++
Sbjct: 386 EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLV--SYNTLISGYSMKG 443
Query: 336 RLDD 339
+ D
Sbjct: 444 DIKD 447
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKW 201
+ FN ++ +G V AL L M +PN+ TY+ I+GF + G V A+
Sbjct: 116 TTTFNIMLRHLCATGKPVRALELLRQMP-----RPNAVTYNTVIAGFCARGRVQAALEVM 170
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLC 260
G + + TY +LI G K + + ++EM++ G + PS + ++ G C
Sbjct: 171 REMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYC 230
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
KLD + + ++ G + L+ R + LE + K SP+V
Sbjct: 231 DVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVF 290
Query: 321 LH 322
+
Sbjct: 291 TY 292
>gi|393246649|gb|EJD54158.1| hypothetical protein AURDEDRAFT_80938 [Auricularia delicata TFB-10046
SS5]
Length = 1149
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 48/285 (16%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ ALI++ + ++ A + W + L G + Y +I+ K + V A+ +F
Sbjct: 743 AYGALISATKDTTDDVAPALALWEESQTL-GVRPHIFLYNTIISKLAKARKVDHALALFQ 801
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+AQGI+P S F ++I AC GD ++A LF M S YKP ++ + ++
Sbjct: 802 KMKAQGIRPSSVTFGAMISACARVGDAISAEHLFTEMASMNNYKPRIPPFNTLMQLYTYT 861
Query: 193 GNVDAMNKWYAAN-IAAGFSVNVQTYESLI--HGSLKARDFDSVDRFYE----------- 238
+ WY ++AG S N TY+ L+ +G ++ DF +++ +E
Sbjct: 862 KPDRSRVLWYYEQMVSAGISPNGHTYKLLMDAYGMIEPVDFAALENIFESLCQDRNVVVA 921
Query: 239 ---------------------------------EMMSLGIIPSIPILEKVLEGLCARRKL 265
+ S +P + E ++ L R++
Sbjct: 922 GSHWASLINAYGCTAKDLDRAISVFEGVQTHPTSLRSARAMPDAVVYEALINVLVTARRM 981
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
D V +++ L G + +A L+K + G + + E+L
Sbjct: 982 DLVPQYIERLQNSGIHMTAYIANLLIKGHAATGNIQAARDLFESL 1026
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y +I K + + M +G+ P +N+LI G V
Sbjct: 103 RGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEA 162
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A + ++M S PN +TY+ I GF NV + + + + +V TY SLI
Sbjct: 163 AQEILDLM-HSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLI 221
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG K DS R M G++P ++ LC + +++ L G K
Sbjct: 222 HGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIK 281
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETL 310
NE + L+ YC+ G++D+ L+ +
Sbjct: 282 ANEVIYTALIDGYCKAGKMDDANSLLDRM 310
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 9/255 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEA 136
SL K L +RL ++ N D+ Y+ I K + A +F S++
Sbjct: 218 NSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKE 277
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+GIK + ++ +LI +G + A SL + M++ E+ PNS TY+A I G V
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLT-EDCLPNSSTYNALIDGLCKERKVQ 336
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ I G V TY LI LK DFD R ++M+S G P + I +
Sbjct: 337 EALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFI 396
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL--TKCN 314
C R + + + + G + ++ Y LG ++ + L+ + T C+
Sbjct: 397 HAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCD 456
Query: 315 QSPEVLLHFFSGIIR 329
S H +S +I+
Sbjct: 457 PSH----HTYSCLIK 467
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 121/298 (40%), Gaps = 7/298 (2%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+V A VF M +G + + + +LI G V +++F+ M + Y P +T
Sbjct: 18 NDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCY-PTVRT 76
Query: 182 YDAFISG-FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
Y + F S ++A+N ++ G N+ TY +I+ K + R +EM
Sbjct: 77 YTVIVHALFESGRRMEAIN-LFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEM 135
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G++PS+P +++G C ++ + L + NE +L+ +C V
Sbjct: 136 VEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNV 195
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
L + + +P V+ ++ +I LD + M + G+
Sbjct: 196 HRAMALLSKMLESRLTPSVVT--YNSLIHGQCKIGYLDSAYRLLNLMNENGV-VPDQWTY 252
Query: 361 EMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ I + + + ++ + +K K Y L+ GY +AG +S+++ M
Sbjct: 253 SVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 39/355 (10%)
Query: 97 LDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
LD+ML E CL Y LI K + V A+ + SM +G+K + LI A
Sbjct: 307 LDRML--TEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAM 364
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
L GD A + + MVSS Y+P+ Y AFI F + GN+ + G +
Sbjct: 365 LKEGDFDYAHRILDQMVSSG-YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD 423
Query: 214 VQTYESLI--HGSLKARD--FDSVDRFY--------------------EEMM----SLGI 245
TY +I +G L + FD + R + EE+ ++ +
Sbjct: 424 ALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVAL 483
Query: 246 IPSIP-ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
SIP + + + K + + +L G N N KL+ C++GR+ +
Sbjct: 484 CDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQ 543
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
+ + + + SP + ++ ++ D VG M + G E + ++
Sbjct: 544 KLFDHMNERGVSPSEAI--YNSLLNCCCELGIYGDAVRLVGAMMEHG-HLPLLESLNVLF 600
Query: 365 CSYFRCAAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
C + + ++ +F + ++ Y + L+ G + GLS ++ M+
Sbjct: 601 CGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVME 655
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 3/169 (1%)
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
TAL LFE M+ PN TY I G +G + K + G S + Y SL
Sbjct: 506 TALELFEKMLE-HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSL 564
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
++ + + R MM G +P + L + GL ++ K LL G+
Sbjct: 565 LNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGY 624
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFFSGI 327
+E + L+ + G D E L + C P+ G+
Sbjct: 625 NDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 129/288 (44%), Gaps = 8/288 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNV 124
+ S +++A++ +L +S A+ + L + N + Y LI AL G+
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTSARRFFDSMLSDGVAPN---VYTYNILIRALCGRGHRK 167
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + M G P+ +N+L+ A +G+V A L +M+ KPN T+++
Sbjct: 168 E-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGG-LKPNLVTFNS 225
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++G G ++ K + + G + + +Y +L+ G KA + EM G
Sbjct: 226 MVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG 285
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I+P + ++ +C L+ + ++ + G ++NE L+ +C+ G +D+
Sbjct: 286 IMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 345
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +C P V+ ++ +I Y + R+D+ + M +GL
Sbjct: 346 LAVRGMRQCRIKPSVVC--YNALINGYCMVGRMDEARELLHEMEAKGL 391
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI + K N+ +A+ + M +G++ + F +LI G + AL M
Sbjct: 293 FTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMR 352
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP+ Y+A I+G+ +G +D + A G +V TY ++I K D
Sbjct: 353 QCR-IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 411
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
S ++M+ G++P ++ LC ++L K ++ G + +E L
Sbjct: 412 HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 471
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ +C+ G V+ + + K P+V+
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVV 501
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y+ +I+ K + A + M +G+ PD+ ++SLI LC ++
Sbjct: 389 KGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI-RVLCEEKRLS 447
Query: 162 -ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A LF+ M+ +P+ TY + I G GNV+ + + AG +V TY L
Sbjct: 448 DAHVLFKNMIKLG-LQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVL 506
Query: 221 IHG-SLKARDFDS--------------VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
I+G S AR ++ + Y+ +M + + +L+G C + +
Sbjct: 507 INGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 566
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + +L W ++ ++ L+ +C G V
Sbjct: 567 NEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNV 601
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 16/217 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A+ + M G+ PD ++ LI S + A L +
Sbjct: 468 YTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 527
Query: 171 SSEEYKPNSKTYDAF---------------ISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
E N+K YDA + GF G ++ +K Y + + ++++
Sbjct: 528 HEEPIPANTK-YDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGS 586
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y LIHG +A + F+++M+ G P+ ++ GL + ++ L
Sbjct: 587 VYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 646
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
L + ++ L+ G VD + + L + K
Sbjct: 647 LNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAK 683
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 158/381 (41%), Gaps = 51/381 (13%)
Query: 81 LQSSSPKKAQLVLEW--RLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG 138
L PK+ + V+ R+DK ++ +YA LI GK + A F M A G
Sbjct: 100 LIEEQPKEVRKVVNAFKRIDKAVE------RDYALLIHYYGKRGDKRGARVTFEKMRAAG 153
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
I +N+LI A + + ++ A+S E M E PN+ T+ A ISG+ S GNV+A
Sbjct: 154 IDSSVHAYNNLIRAYIMAQNLQGAVSCVEEM-EIEGIFPNAATFSAIISGYGSSGNVEAA 212
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
KW+ +++ ++ NV Y S+IH KA + + + +M G+ ++ + +++G
Sbjct: 213 EKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDG 272
Query: 259 ----------------LCAR----------------------RKLDRVKSFLKFLLGGGW 280
L AR K+ + F K + G
Sbjct: 273 YARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGI 332
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
+N N LV Y +LG E +++ P+ + ++ +++ + S ++
Sbjct: 333 TLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVT--YNILLKAFCKSRQMTRA 390
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVA 399
+GRM +G S + + +I + + + +K + TY+ ++
Sbjct: 391 IQLLGRMKTRGCS-PTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMH 449
Query: 400 GYRRAGLSGKLDSVINEMKFA 420
+ G + SVI+EM+ A
Sbjct: 450 NLVQLGQIDRAASVIDEMELA 470
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 96 RLDKMLKGNESCLDEYACLIALS---------GKVQNVPFA--MHVFTSMEAQGIKPDSA 144
+L KM+K E C + A I L+ G VQ FA VF M GI+PD
Sbjct: 313 KLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWV 372
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N L+ A S + A+ L M + P +TY I GF G+V K +
Sbjct: 373 TYNILLKAFCKSRQMTRAIQLLGRM-KTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSE 431
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
AG N TY ++H ++ D +EM G+ P+ +++G + +
Sbjct: 432 MKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGE 491
Query: 265 LDRVKSFLKFLLGGGWKINENMAQK--------LVKCYCELGRV 300
+ LK ++NE + QK L+K C+ GR+
Sbjct: 492 IGLAFKCLK-------RVNE-ITQKPPIISYASLLKACCKAGRM 527
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G++QN A+ V M G+ ++ +FN+L+ GD+ A + + M E + P
Sbjct: 524 AGRMQN---AIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKM-RQEGFTP 579
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y +F++ G++ + N+QTY LIHG + Y
Sbjct: 580 DIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICY 639
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+EM + G+IP P+ ++ L ++ + R
Sbjct: 640 DEMKAAGLIPDKPLYYCIVTSLLSKAAIAR 669
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 6/231 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + Y +I K +V A + M+ G +P++ +N ++ + G +
Sbjct: 400 RGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDR 459
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A S+ + M + +PN ++Y + GF+S+G + K + +Y SL+
Sbjct: 460 AASVIDEMELAG-VQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLL 518
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
KA + EEM G+ + I +L+G R + ++ + G+
Sbjct: 519 KACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFT 578
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-----VLLHFFSGI 327
+ + V C+ G + + E +E + + + P +L+H ++ +
Sbjct: 579 PDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSV 629
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 1/183 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+V NV A +F M + G+ PD N+L+ +G + AL +F++ S+ ++
Sbjct: 243 QVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK-MDLDT 301
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + I+G VD + + G +V TY LI +K +F + Y E
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GIIPS +++G C + +L+ + + ++ G + L+K YC+ GR
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGR 421
Query: 300 VDE 302
VD+
Sbjct: 422 VDD 424
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 4/213 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLE-WRLDKML--KGNESCLDEYACLIALSGKVQ 122
F S+ D ++ + K V E W L L G E+ + Y LI + K
Sbjct: 291 VFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEG 350
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N A ++ M +GI P + +NS++ + A + + MVS E P+ T+
Sbjct: 351 NFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS-EGCSPDVVTF 409
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G+ G VD + ++ G + TY +LIHG K D + +EEM+S
Sbjct: 410 STLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVS 469
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
G+ P +L GLC + +L + + L+ L
Sbjct: 470 SGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD F++LI A + G V A L+ M+ + P + TY + I
Sbjct: 134 AEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIF-PTTITYSSMI 192
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-----------DFDSVDR 235
GF ++ + ++ G S ++ T +LI G +A+ + +
Sbjct: 193 DGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQD 252
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
++EM+S G+ P I +L GLC KL++ K ++ ++ C
Sbjct: 253 LFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMC 312
Query: 296 ELGRVDE 302
+ +VDE
Sbjct: 313 KGNKVDE 319
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/236 (19%), Positives = 102/236 (43%), Gaps = 13/236 (5%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M++ G++ Y ++ K+ + A+++ M+ IK + ++++++
Sbjct: 33 VDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCK 92
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G+ + A ++F M + PN TY+ I G+ S G + I +V
Sbjct: 93 DGNHIKAQNIFTEMHEKGIF-PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVV 151
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI+ +K + Y EM+ I P+ +++G C +L+ K +
Sbjct: 152 TFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLM 211
Query: 276 LGGGWK---INENM--------AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ G I N + L+ +C++G V+ ++ + + SP+++
Sbjct: 212 VSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIV 267
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A V ME +G+ D+ + LI G + A + MV
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY A G G+V A N+ + G +N+ TY SLI+G KA +
Sbjct: 453 Q-KRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R +M G+ P + ++ LC ++LDR S L+ +L G K L
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+ +C GRV+ + LE + + N P
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHP 598
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 1/211 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K N+ AM M+ G+KPD + ++I A S ++
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDR 548
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A SL + M+ + KP TY+ ++GF G V+ + + N TY SL+
Sbjct: 549 AHSLLQEMLD-KGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ S Y+ M+S ++P+ +++G C R + F ++ G++
Sbjct: 608 KQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFR 667
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ + L++ + + E E + K
Sbjct: 668 LTASSYNALIRLLNKKKKFTEARRLFEKMRK 698
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL V A+ V M G+ D+AVF +++ GD+ A + F+ M
Sbjct: 323 YTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM- 381
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY A I+G G + + G V+ TY LI G K
Sbjct: 382 QKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKM 441
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M+ + P++ + +GLC + + L + G ++N L
Sbjct: 442 TEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G +++ + + + P+V + ++ II S LD + M +
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDV--YTYTTIIGALCQSKELDRAHSLLQEMLDK 559
Query: 351 GL 352
G+
Sbjct: 560 GI 561
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 3/230 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +G++P+ + SL+ +GD A +++ M+ + K ++ + + +
Sbjct: 309 ARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLG-KGLKESTVSCNILV 367
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF + G VD + + G +V TY LI G KA + YE+++S G+
Sbjct: 368 TGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLE 427
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ +++ +C ++D LK + G + + ++ +C+ R ++
Sbjct: 428 PSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAW 487
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
L + K N P H F+ ++ L + S R+DD + M K G S
Sbjct: 488 LAGMLKKNLKPRE--HTFNSLVELLSSSGRVDDALLVLNTMFKIGHELGS 535
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 3/223 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D +G LD A L+A N M A G PD+ ++ +I
Sbjct: 210 DGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHK 269
Query: 158 DVVTALSLF-EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
AL +F EI + Y ++ TY I G +G +D + + + G N
Sbjct: 270 MGSEALRVFNEIKLRG--YNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYA 327
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y SL+ KA DF+ + Y+EM+ G+ S ++ G C ++D + ++
Sbjct: 328 YCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMV 387
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
G + + L++ C+ GR+ E + E L P V
Sbjct: 388 KKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSV 430
>gi|20146263|dbj|BAB89045.1| putative drought-inducible protein 1OS [Oryza sativa Japonica
Group]
gi|20160842|dbj|BAB89782.1| putative drought-inducible protein 1OS [Oryza sativa Japonica
Group]
gi|215700983|dbj|BAG92407.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 390
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IAL G+ +P A+ F S P + N+L+ ACL SG+ A +F+ +
Sbjct: 111 IALFGQAGLLPDAVSTFKS------SPSTRSLNALLFACLVSGNHAEAARVFQTFPDAYS 164
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN+ T++A I F+ G + G N T+ + I G K FD V
Sbjct: 165 VKPNTDTFNAIIKSFAESGTTRSFYSVLDEMCQKGVKPNATTFTTAIAGFYKEERFDDVG 224
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+P+ ++GLC + K+ L ++ G K + L+ +
Sbjct: 225 KVIELMKKHGCGESLPVFNVRVQGLCKLGRSGDAKALLNEMVKKGTKPSWLTYNHLIHGF 284
Query: 295 CELGRVDELEEQLETLTK 312
C+ G ++E + + + K
Sbjct: 285 CKEGDLEEAKRLYKEMAK 302
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ACL++ N A VF + +A +KP++ FN++I + SG + S+ + M
Sbjct: 141 FACLVS-----GNHAEAARVFQTFPDAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEM 195
Query: 170 VSSEEYKPNSKTYDAFISGF------SSLGNV-DAMNKWYAANIAAGFSVNVQ------- 215
+ KPN+ T+ I+GF +G V + M K F+V VQ
Sbjct: 196 CQ-KGVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGR 254
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
TY LIHG K D + R Y+EM G++
Sbjct: 255 SGDAKALLNEMVKKGTKPSWLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYM 314
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC D + W + + LV RVDE + +E +
Sbjct: 315 LIYYLCKGGDFDTAVGVYNEIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKM 370
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 17/233 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
D ++ + +++A+I S +S + + VL+ K +K N + + IA K
Sbjct: 161 DAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEMCQKGVKPNATT---FTTAIAGFYKE 217
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPN 178
+ V M+ G VFN + C SGD A +L MV + KP+
Sbjct: 218 ERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGRSGD---AKALLNEMVK-KGTKPS 273
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GF G+++ + Y G + Y LI+ K DFD+ Y
Sbjct: 274 WLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYMLIYYLCKGGDFDTAVGVYN 333
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL------LGGGWKINEN 285
E+ + +P ++ ++ GL ++D K ++ + GWK E+
Sbjct: 334 EIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKMKEKFPDKAEGWKEVED 386
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 25/283 (8%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ LI L + S K L+L M+ NE Y LI K + A VF
Sbjct: 251 TYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEIT---YNTLINGLVKEGKIGVATKVF 307
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + P+S +N+LI +G++ AL L ++MV S +PN TY A ++G S
Sbjct: 308 EEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMV-SHGLRPNEVTYGALLNGISK 366
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ G V +Y ++I G K + + ++M+ + + P I
Sbjct: 367 HAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVT 426
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ G FLK G N + L+ YC++G L+E L
Sbjct: 427 FSVLVNG------------FLK----TGLVPNRVLHSTLIYNYCKMG---NLKEALNAYA 467
Query: 312 KCNQSPEVLLHFFSGI-IRLYALSDRLDDVEYSVGRMGKQGLS 353
NQS V HF S + + + RL++ EY V M + GL+
Sbjct: 468 VMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLA 510
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 4/222 (1%)
Query: 111 YACLIA-LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LIA L K + VP + ++E + P+ A++ SL+ L G AL +FE M
Sbjct: 621 YTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDM 680
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ E +P++ ++ + +S G + +N + + N+ TY L+HG K
Sbjct: 681 LN-EGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHG 739
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ Y EM+ G P ++ G C LD FL+ + G+K++
Sbjct: 740 MARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNV 799
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
LV CE + + ++ L +P V + F+G +R
Sbjct: 800 LVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVR 841
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 150/362 (41%), Gaps = 20/362 (5%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ L+ +L K+ VL ++D+ G+ Y L+ K A +
Sbjct: 181 TFNILLNALCERGKFKSAGVLLRKMDE--TGHFPTAVTYNTLLNWYCKKGRYKAASELID 238
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+M ++GI D +N LI + M + Y PN TY+ I+G
Sbjct: 239 AMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVY-PNEITYNTLINGLVKE 297
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G + K + N TY +LI G + + R + M+S G+ P+
Sbjct: 298 GKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTY 357
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L G+ + V S L+ + G ++ ++ C+ G ++E + L+ + K
Sbjct: 358 GALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLK 417
Query: 313 CNQSPEVLLH--FFSGIIRLYALSDRL--DDVEYSVGRMG--KQGLSFKSAED------- 359
+ SP+++ +G ++ + +R+ + Y+ +MG K+ L+ + +
Sbjct: 418 VSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSD 477
Query: 360 ---VEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
+++ S+ RC + + F+DH+ + T+D ++ Y +G + K SV +
Sbjct: 478 HFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFD 537
Query: 416 EM 417
+M
Sbjct: 538 KM 539
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 47/328 (14%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWR-LDKMLKGNESCLDEYACLIAL 117
LD + + F F++ +LI L L+L R ++K L + Y L+
Sbjct: 606 LDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAM--YTSLVDG 663
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + A+++F M +G++PD+ FN L+ G + + M S
Sbjct: 664 LLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTM-RSRSLCF 722
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF- 236
N TY+ + G+S + +K Y I GF+ + T+ SLI G K+ D +F
Sbjct: 723 NLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFL 782
Query: 237 ----------------------------------YEEMMSLGIIPSIPILEKVLEGLCAR 262
+++ LG+ P++ + G
Sbjct: 783 RKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRT 842
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQSPEV 319
D + L LL G+ L++ C +G V EL+++++ L +Q +
Sbjct: 843 CSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAM 902
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRM 347
S IIR A S + D+ +G M
Sbjct: 903 -----SAIIRGLARSRKTDEATRILGIM 925
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + +G K D N L+ ++ A L + ++ PN TY++
Sbjct: 778 AVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVK-QLNMLGVTPNVDTYNSLF 836
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF + D A + G++ + + +LI G + + +EM LG+
Sbjct: 837 NGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVS 896
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ GL RK D L +L L+ YC+ G V + E
Sbjct: 897 SQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALEL 956
Query: 307 LETLTKCNQSPEV 319
+ +C+ +V
Sbjct: 957 RSVMEQCHVKLDV 969
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
D + I +S + A+I L +S +A +L L+ + + + L+
Sbjct: 888 DEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQII---PTVATFTTLMHTY 944
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K NV A+ + + ME +K D A +N LI GD+ A L+E M + + PN
Sbjct: 945 CKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIW-PN 1003
Query: 179 SKTYDAFISGFSSLGN 194
+ Y I F GN
Sbjct: 1004 TSIYIVLIDSFLCTGN 1019
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 114/276 (41%), Gaps = 10/276 (3%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G+ P S F+ +I SGD + A S+F+ M +S + P+ TY+ + G G
Sbjct: 504 MSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKM-NSLGHLPSQFTYEGLLKGLLIGG 562
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+++ + + +++ Y +++ + ++ + + +EM+ +P
Sbjct: 563 HINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYT 622
Query: 254 KVLEGLCARRKLDRVKSFL---KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GLC + K+ V + L + + G N M LV + G E +
Sbjct: 623 SLIAGLCRKGKM--VPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDM 680
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P+ + F+ ++ Y+ ++ V + M + L F A +++ Y +
Sbjct: 681 LNEGVQPDAIA--FNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLAT-YNILLHGYSKR 737
Query: 371 AAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
R L+ + I + R T+ L+ GY ++G
Sbjct: 738 HGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSG 773
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 4/188 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G V N A+ +F ME G++ D+ +NSL+ CSG A L MV + P
Sbjct: 187 TGLVNN---ALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVM-RDIVP 242
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T+ A I+ F G K+Y I +V TY S+IHG D +
Sbjct: 243 NVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQIL 302
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ M++ G P + ++ G C +++D ++ + G ++ +++ Y +
Sbjct: 303 DLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQA 362
Query: 298 GRVDELEE 305
GR D +E
Sbjct: 363 GRPDAAQE 370
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 134/360 (37%), Gaps = 74/360 (20%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCS------------ 156
E++ L++ K +N + +F +ME GI D +N +I C C CS
Sbjct: 71 EFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKM 130
Query: 157 ------GDVVTALSLF-------------EIMVSSEEY--KPNSKTYDAFISGFSSLGNV 195
DVVT SL +++ EE K + Y+ I GF G V
Sbjct: 131 MKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLV 190
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHG---------------SLKARD----------- 229
+ + G + TY SL+ G + RD
Sbjct: 191 NNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTAL 250
Query: 230 ---------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
F +FYEEM+ I P + ++ GLC ++D K L ++ G
Sbjct: 251 INAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGC 310
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
+ L+ +C+ RVDE + + +++ + + F+ II+ Y + R D
Sbjct: 311 FPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVT--FNTIIQGYFQAGRPDAA 368
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+ RMG + + ++ + +C +R L LF K +L TY+ ++ G
Sbjct: 369 QEIFSRMGSRP-NIRTYSILLYGLCYNWRVEK--ALVLFESMQKSEMELDITTYNIVIHG 425
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+ M G +P+ ++ L+ + V AL LFE M SE + + TY+ I
Sbjct: 368 AQEIFSRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSE-MELDITTYNIVI 423
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GNV+ + + G +V TY ++I G + R +D D Y +M G++
Sbjct: 424 HGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGLL 483
Query: 247 P 247
P
Sbjct: 484 P 484
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 8/248 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
T LQ + K A + + LD M++ N C A GKV AM VF+ M
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ---AMLVFSKM 400
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNSLIHSLCIFDK 459
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
D + + G ++ + S+I K ++ ++ M+ +G+ P+I
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYST 519
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++G C K+D L ++ G K + L+ YC++ R+++ +
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 315 QSPEVLLH 322
SP+++ +
Sbjct: 580 VSPDIITY 587
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 103/226 (45%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + PN + I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILI 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ G VD ++ G + + TY ++I K+ + R++E+M+ +
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC K D+ K + +L G ++ ++ +C+ GRV E E+
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + P ++ +S +I Y L+ ++D+ + M G+
Sbjct: 502 FDLMVRIGVKPNIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 545
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +GI D+ FNS+I + G V+ + LF++MV KPN TY I
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPNIITYSTLI 521
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K A+ ++ G + TY +LI+G K + + EM S G+
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641
Query: 307 LETL 310
+ L
Sbjct: 642 FQNL 645
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G P+ +N L+ AL L ++M + P+ +Y I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G++D Y + G NV TY S+I KA+ D M+ G++P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G C+ + FLK + G + + L+ C+ GR E + +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++TK PE+ + +++ YA L ++ + M + G+ + ++IC+Y
Sbjct: 329 SMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI-HPNHYVFSILICAYA 385
Query: 369 RCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 386 KQGKVDQAMLVFSKMR 401
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 18/295 (6%)
Query: 56 KTTLDSVDIFAFNSSQ-------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL 108
K T D++DI +Q FS++ L+ L ++Q LE L M C
Sbjct: 140 KRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGL--CDENRSQEALEL-LQMMPDDGGDCP 196
Query: 109 DE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALS 164
+ Y +I K ++ A + M +GI P+ +NS+I A LC + A+
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSII-AALCKAQAMDKAME 255
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ MV + PN +TY++ + G+ S G + + G +V TY SL+
Sbjct: 256 VLTSMVKN-GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYL 314
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K + ++ M G+ P I +L+G + L + L ++ G N
Sbjct: 315 CKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNH 374
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ L+ Y + G+VD+ + + +P+ + + +I + S R++D
Sbjct: 375 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT--YGTVIGILCKSGRVED 427
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 18/307 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IA K Q + AM V TSM G+ P+ +NS++ SG A+ + M
Sbjct: 237 YNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM- 295
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G + TY +L+ G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P+ + ++ + K+D+ + G + +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I + D+ D + + M +
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIV--YNSLIHSLCIFDKWDKAKELILEMLDR 473
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
G+ F S D C R ++L DL ++ K TY L+ GY
Sbjct: 474 GICLDTIFFNSIIDSH---CKEGRVIESEKLFDLM---VRIGVKPNIITYSTLIDGY--- 524
Query: 405 GLSGKLD 411
L+GK+D
Sbjct: 525 CLAGKMD 531
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L+LE LD+ + CLD + +I K V + +F M G+KP+
Sbjct: 462 KAKELILEM-LDRGI-----CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNII 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+++LI +G + A L MVS KP+ TY+ I+G+ + ++ +
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPDCVTYNTLINGYCKISRMEDALVLFRE 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++G S ++ TY ++ G + R + Y + G + +L GLC
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
D + L ++ ++ ++GR DE ++ L+ P+V
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMV--SSEEYKPNSKTY 182
A HVF + +G A L CA + A+S + M ++E PN TY
Sbjct: 38 ARHVFDELLRRG---RGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTY 94
Query: 183 DAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFD 231
I GF++LGNV I GF V+ + L+ G R D
Sbjct: 95 GILIGSCCCAGRLDLGFAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSD 144
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++D M LG IP++ +L+GLC + L+ +
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 5/237 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + + Y+ +I+ + NV ++ VF M +G +P+ F SLI G V
Sbjct: 273 RGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGD 332
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESL 220
A+ L+ +M+ E PN Y+ I G S GN+D A++ W NV TY ++
Sbjct: 333 AVGLWNLMIR-EGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQME-KDSIRPNVTTYSTI 390
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+G K+ D S + +M++ G P++ + +++ LC D+ + ++ G
Sbjct: 391 IYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGC 450
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+K C GRV+ L+ + K P + + G+ R A +
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFRE 507
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 7/207 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + M +G+ P+ ++++I +CL G+V +L++F M +PN +T+ +
Sbjct: 263 AFDLMNEMVDRGVDPNVISYSTVI-SCLSDMGNVELSLAVFGRMFV-RGCRPNVQTFTSL 320
Query: 186 ISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I GF G V DA+ W I G S NV Y +LIHG + D + +M
Sbjct: 321 IKGFFVRGRVGDAVGLWNLM-IREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I P++ ++ G L ++ G + N + +V C++ D+
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAF 439
Query: 305 EQLETLTKCNQSPEVLL--HFFSGIIR 329
+ ++ + P V+ +F G+ R
Sbjct: 440 DLIDNMISDGCPPTVITFNNFIKGLCR 466
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ +M+++G++P+ +N L+ A +G V A L + +S++ P+ +Y IS
Sbjct: 166 LYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLL-VEMSNKGCDPDDVSYTTVISSM 224
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
LG+VD A +A F V Y +LIHG K F EM+ G+ P++
Sbjct: 225 CKLGDVDK-----ARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNV 279
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
V+ L ++ + + G + N L+K + GRV +
Sbjct: 280 ISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNL 339
Query: 310 LTKCNQSPEVLLH 322
+ + SP V+ +
Sbjct: 340 MIREGVSPNVVAY 352
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 95/240 (39%), Gaps = 29/240 (12%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF---------T 132
S + K L E +DK+ + NE +D + L+ K++NVP + +F +
Sbjct: 66 NSGTFKHTHLTYETMIDKLGRNNE--MDGVSYLLQ-QMKLENVPCSQELFQFVIKCYRRS 122
Query: 133 SMEAQGIK-----------PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
++ QG+K P ++N L+ L S ++ ++ + SE +PN T
Sbjct: 123 NLGEQGLKMFYRIREFGCEPSVKIYN-LVLDALLSQNLFKMINALYNNMKSEGLEPNVFT 181
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ + G VD K G + +Y ++I K D D +
Sbjct: 182 YNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARE-----L 236
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
++ P +P+ ++ G+C + + ++ G N ++ C ++G V+
Sbjct: 237 AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVE 296
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 36/224 (16%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A+ V+ ME I+P+ ++++I SGD+V+A + M++ +PN Y
Sbjct: 364 NMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCG-CRPNVVVY 422
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + D I+ G V T+ + I G +A + ++M
Sbjct: 423 TCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEK 482
Query: 243 LGIIPSIPILEKVLEGL---------CA------RRKLD--------------------R 267
+P+I ++L+GL C RK++ +
Sbjct: 483 YECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQ 542
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
V L +L G K++ V YC+LG+V + L+ ++
Sbjct: 543 VLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNIS 586
>gi|357125390|ref|XP_003564377.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g61870, mitochondrial-like [Brachypodium
distachyon]
Length = 390
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IAL G+ +P A+ F S P + N+L+ ACL +G+ A +F+ +
Sbjct: 111 IALFGQAGLLPDAISTFQS------SPSTRSLNALLFACLVAGNHAEAARIFQTFPDAHN 164
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN++T++A I FS G + + G N T+ + I G K F V+
Sbjct: 165 VKPNTETFNAIIKSFSESGTTRSFYSVFDEMCKKGVKPNATTFTTAIAGFYKEEQFGDVE 224
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+ + ++GLC + K+ L ++ G K + L+ +
Sbjct: 225 KVIELMKKHGCGESLQVYNARVQGLCKLGRSGEAKALLNEMVKRGTKPSWVTYNHLIYGF 284
Query: 295 CELGRVDELEEQLETLTK 312
C+ G ++E++ + + K
Sbjct: 285 CKEGDLEEVKRLYKEMGK 302
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 8/162 (4%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M+ G V+N+ + G A +L MV KP+ TY+ I GF G
Sbjct: 230 MKKHGCGESLQVYNARVQGLCKLGRSGEAKALLNEMVK-RGTKPSWVTYNHLIYGFCKEG 288
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+++ + + Y G + Y +LI KA DFDS Y E + +P ++
Sbjct: 289 DLEEVKRLYKEMGKKGLVGDSSFYFTLIFYLCKAGDFDSALGVYNETTARSWVPCFSTMK 348
Query: 254 KVLEGLCARRKLDRVKSFLKFL------LGGGWK-INENMAQ 288
++ GL K+D K ++ + GWK + E + Q
Sbjct: 349 MLVNGLAGSSKVDEAKGIIEKMKEKFPDKAEGWKEVEEALPQ 390
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 42/172 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ACL+A N A +F + +A +KP++ FN++I + SG + S+F+ M
Sbjct: 141 FACLVA-----GNHAEAARIFQTFPDAHNVKPNTETFNAIIKSFSESGTTRSFYSVFDEM 195
Query: 170 VSSEEYKPNSKTYDAFISGF---SSLGNVDA----MNKWYAANIAAGFSVNVQ------- 215
+ KPN+ T+ I+GF G+V+ M K ++ VQ
Sbjct: 196 CK-KGVKPNATTFTTAIAGFYKEEQFGDVEKVIELMKKHGCGESLQVYNARVQGLCKLGR 254
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
TY LI+G K D + V R Y+EM G++
Sbjct: 255 SGEAKALLNEMVKRGTKPSWVTYNHLIYGFCKEGDLEEVKRLYKEMGKKGLV 306
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M G +P+ +N+L+ + + SG + A +L ++M+ + KP+ T++ I F
Sbjct: 194 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR-RDCKPSHFTFNLMIDMF 252
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G +D + + G ++ TY +I G+ +A D + E M G P +
Sbjct: 253 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 312
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC ++D + L GG+ ++ L+ C+ R+D+ E+ L
Sbjct: 313 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 372
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ + +P+V+ ++ +I + +D+LD
Sbjct: 373 MERNGSAPDVVA--YTILIHGFCKADQLD 399
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+I + KV + A +F M +G PD +N +I + + A L E M +
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ TY++ +SG VD + Y G+ ++V T +LI G K+R D
Sbjct: 308 -CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDA 366
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ EM G P + ++ G C +LD+ +F +L G
Sbjct: 367 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG 412
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 39/276 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL---------------- 154
Y+ LI K ++ A + ME +GI P +AV+N++I
Sbjct: 36 YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ 95
Query: 155 --CSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVDA 197
C+ V+T L + + S PN TY+ I+GF LGN+D
Sbjct: 96 RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 155
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + S +V TY LI G K + +EM+ G P+ +++
Sbjct: 156 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 215
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
L K + + +L K + ++ +C++G++D E + +T P
Sbjct: 216 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 275
Query: 318 EVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
++ + SG R ++R+DD + RM + G
Sbjct: 276 DIYTYNIMISGACR----ANRIDDARQLLERMTEAG 307
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 7/212 (3%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFA 127
S F+++ +I K QL L + L +++ D Y I +SG + + A
Sbjct: 241 SHFTFNLMIDMF----CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 296
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ M G PD +NS++ + V A ++E++ + Y + T I
Sbjct: 297 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG-YFLDVVTCSTLID 355
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G +D K G + +V Y LIHG KA D F+ EM+ G +P
Sbjct: 356 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 415
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ V++ LC ++ LK +L G
Sbjct: 416 TVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
TY +LI+G KARDF R +EM GI+P + +++GLC ++D
Sbjct: 35 TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVD 85
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 145/357 (40%), Gaps = 15/357 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
D+F +NS +I ++ ++A+ L L++ L+ N Y I K
Sbjct: 485 DVFCYNS------LIIGFCKAKRMEEARTYLMEMLERRLRPNAHT---YGAFIDGYSKAG 535
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A F M + G+ P+ ++ +LI G+V A S+F ++S + + +TY
Sbjct: 536 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTY 594
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G S G + ++ G N TY SLI GS K + D + EEM
Sbjct: 595 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCI 654
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P I +++GLC +++R K+ + G G N +V YC+
Sbjct: 655 KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTA 714
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ LE + P+ + ++ I+ ++ + M ++G F S
Sbjct: 715 AFQLLEEMLLRGVPPDAFI--YNVILNFCCKEEKFEKALDLFQEMLEKG--FASTVSFNT 770
Query: 363 VICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I Y + + L+ I+ + TY L+ +AG+ G+ + EM+
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 827
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V + + M QGI PD +NSLI C + + + +
Sbjct: 454 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG-FCKAKRMEEARTYLMEM 512
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN+ TY AFI G+S G ++ ++++ ++ G NV Y +LI G K +
Sbjct: 513 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNV 572
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++S ++ + ++ GL K+ L G N L
Sbjct: 573 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 632
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C+ G VD+ + LE + +P+++ +
Sbjct: 633 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 10/267 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIA 116
L+ +D+ +++ALI ++ + +R+ D+M+ G E+ L + L+
Sbjct: 300 LEMIDV-GLKPEPITYNALIDGFM----RQGDIEQAFRIKDEMVACGIEANLIIWNTLLN 354
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEY 175
K + A+ + M +G++PDS + SL+ C G ++ A L + M +
Sbjct: 355 GVCKAGKMEKALEIMQEMMEKGVEPDSQTY-SLLIEGHCRGQNMARAFELLDEM-KKRKL 412
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P TY I+G GN+ N + G N Y +L+ K +
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 472
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
E M GI+P + ++ G C ++++ +++L +L + N + + Y
Sbjct: 473 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 532
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G ++ + + C P V ++
Sbjct: 533 KAGEMEIADRYFNEMLSCGVLPNVGIY 559
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 125/314 (39%), Gaps = 13/314 (4%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFE 167
D L+ + K + + A+ + SM +G+ PD ++ LI C+ L L E
Sbjct: 242 DAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE 301
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
++ KP TY+A I GF G+++ + +A G N+ + +L++G KA
Sbjct: 302 MIDVG--LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA 359
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ +EMM G+ P ++EG C + + R L +
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++ C G + L + P ++ ++ ++ +A R+++ + RM
Sbjct: 420 SVIINGLCRCGNLQGTNAILREMVMNGLKPNAVV--YTTLMTAHAKEGRVEESRMILERM 477
Query: 348 GKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRR 403
+QG+ DV +I + + + +L + ++ + TY + GY +
Sbjct: 478 REQGI----LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533
Query: 404 AGLSGKLDSVINEM 417
AG D NEM
Sbjct: 534 AGEMEIADRYFNEM 547
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 2/192 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA ++ K +N A + M +G+ PD+ ++N ++ C AL LF+ M+
Sbjct: 699 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E+ ++ +++ I G+ G + N I F N TY SLI + KA
Sbjct: 759 --EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 816
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R + EM ++P+ +L G + V + + ++ G + ++ +
Sbjct: 817 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 876
Query: 291 VKCYCELGRVDE 302
+ YC G V E
Sbjct: 877 IDAYCREGNVME 888
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 10/180 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+Q A H+ M + P+ + SLI +G + A L+ + + P
Sbjct: 778 SGKLQE---ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW-LEMQERNVMP 833
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+KTY + + G+ ++GN+ ++ + +A G + TY +I + + +
Sbjct: 834 TAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLK 893
Query: 238 EEM------MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+E+ M G +P + G +D L+ ++ GW N LV
Sbjct: 894 DEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLV 953
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIM 169
Y L+ + N+ +F M A+GI+PD + +I A G+V+ A L EI+
Sbjct: 838 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 897
Query: 170 VSSEEYKPNSK----TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
V K + T GF GN+D + + + G+ N + L+ G+
Sbjct: 898 VKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQ 957
Query: 226 KARDFDSVDRFYEEM 240
+ + D ++M
Sbjct: 958 NGANSEDSDNLLKQM 972
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 6/234 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ VF + A+G +PD ++ LI G + A+ LF M+
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN+ TY++ ISGF +G +D G S +V TY +L++G K
Sbjct: 213 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 272
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M G+ P + +++GLC +L L + +
Sbjct: 273 DDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF---FSGIIRLYALSDRLDDVE 341
+ YC R ++LEE + + + P ++ F G+ ++ S+ ++ VE
Sbjct: 333 LDGYC---RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVE 383
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 4/244 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L KM K Y LI+ K + A + M G PD + +LI S
Sbjct: 104 LSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKS 163
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQ 215
AL +FE +V + ++P+ TY I G G + + I +G + N
Sbjct: 164 KKSDDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV 222
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + D E M G P + ++ G C +LD L +
Sbjct: 223 TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM 282
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
G + L+ C R+ + L + + + SP V + ++ I+ Y ++
Sbjct: 283 TRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV--YTYNTILDGYCRAN 340
Query: 336 RLDD 339
+L++
Sbjct: 341 QLEE 344
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 15/252 (5%)
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
MV++ + TY + I G + ++ + ++ GF +V TY ++IH
Sbjct: 1 MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+F EEM + + P++ +++GLC ++D + L +
Sbjct: 61 RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTY-N 119
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C+ R E + LE + P++ ++ +I + S + DD R+
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFT--YTTLITGFCKSKKSDDAL----RVF 173
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIK-GSYKLRRATYDFLVAGYRR 403
+Q ++ DV C RL DLF IK GS TY+ L++G+ R
Sbjct: 174 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCR 233
Query: 404 AGLSGKLDSVIN 415
GK+D +N
Sbjct: 234 M---GKMDEAMN 242
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 4/190 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ + A + M +G+ PD F SL+ LC + ++ + + P
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG-LCRENRLSDAVHILGEMRRKSCSPTV 326
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ + G+ ++ K+ + NV ++ +I G K EE
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMDC--PPNVVSFNIMIRGLCKVNRSSEAMELVEE 384
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P + + V++GLC +K+D + + K L G N LV C G
Sbjct: 385 ARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAG 444
Query: 299 RVDELEEQLE 308
+D +E
Sbjct: 445 MLDRARGYIE 454
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 91/286 (31%), Gaps = 91/286 (31%)
Query: 155 CSGDVVTALSLFEIMVS---------------SEEYKPNSKTYDAFISGFSSLGNVDAMN 199
CS D VT SL + + S+ + P+ TY A I +
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66
Query: 200 KWYAANIAAGFSVNVQTYE----------------------------------SLIHGSL 225
K+ + NV TY SLI G
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD------------------- 266
KA EEM+ G IP I ++ G C +K D
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186
Query: 267 -------------RVKS----FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
R+K F + + G N L+ +C +G++DE LE
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP+V+ + +G +L RLDD + +M ++GL+
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLA----RLDDAYDLLNQMTRKGLT 288
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV AM + + PD ++ ++I V A ++ M+ PNS
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ++G + G +D + I G N+ TY LI KA + ++
Sbjct: 431 ITYSTLVTGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486
Query: 240 MMSLG 244
M+ G
Sbjct: 487 MVQRG 491
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + L+ Y LI V N A ++FT M+ G PD +N L+ A SG +
Sbjct: 785 GVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINEL 844
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+E M+ S KPN+ T++ I+ ++D + ++ FS TY L+
Sbjct: 845 FELYEQMICSS-CKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLD 903
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G LK+ + +EEM+ G P+ I ++ G ++ K ++ G +
Sbjct: 904 GLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRP 963
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ LV C CE GRVD+ E L +
Sbjct: 964 DLKSYTSLVGCLCEAGRVDDALHYFEKLKQ 993
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 7/257 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I + G+ + A + ME G PD + LI A +G + A+ LF M
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S +KP+ TY + FS G++ + ++++ A G++ +V T+ L++ KA +
Sbjct: 327 ASS-HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNI 385
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + M G++P++ ++ GL +LD + G
Sbjct: 386 DEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILF 445
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMG 348
+ Y + GR D+ E E + +P ++ S LY+L++ RL + + R+
Sbjct: 446 IDFYGKSGRSDKALETFEKMKIRGIAPNIVACNAS----LYSLAEMGRLREAKVIFNRLK 501
Query: 349 KQGLSFKSAEDVEMVIC 365
GL+ S M+ C
Sbjct: 502 SNGLAPDSVTYNMMMKC 518
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 1/191 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
++ MEA G PD F L+ A +G++ A L ++M + PN TY+ ISG
Sbjct: 357 WSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVM-RKQGVLPNLHTYNTLISGLL 415
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ +D + G TY I K+ D +E+M GI P+I
Sbjct: 416 RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIV 475
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L L +L K L G + ++KCY + G+VDE E L +
Sbjct: 476 ACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM 535
Query: 311 TKCNQSPEVLL 321
++ P++++
Sbjct: 536 SENQCEPDIIV 546
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 7/226 (3%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F+ + ++ L+ L +S ++A+ + E +D + N + Y LI GK +V
Sbjct: 891 FSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAI---YNILINGFGKTGDVN 947
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F M +GI+PD + SL+ CLC +G V AL FE + + Y +S Y+
Sbjct: 948 TACELFKRMVREGIRPDLKSYTSLV-GCLCEAGRVDDALHYFEKLKQTGLYL-DSIAYNL 1005
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G ++ Y + G + ++ TY SLI A + + YEE+ +G
Sbjct: 1006 MIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIG 1065
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ P++ ++ G D + K ++ GG N +L
Sbjct: 1066 LEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 3/239 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I GK A+ F M+ +GI P+ N+ + + G + A +F +
Sbjct: 442 YILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFN-RL 500
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+S TY+ + +S G VD + + ++ SLI+ KA
Sbjct: 501 KSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRV 560
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + + + + P++ ++ GL ++ R + G G N +
Sbjct: 561 DEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTI 620
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
+ C C+ VD + L +T N P+VL F+ II + R+ D + +M K
Sbjct: 621 LDCLCKNDEVDLALKMLYKMTTMNCMPDVLT--FNTIIHGLVIEKRVSDAIWLFHQMKK 677
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 7/229 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDA 184
A+ +F + + P + L+ L SG + A LFE MV +Y +PN+ Y+
Sbjct: 879 ALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMV---DYGCRPNNAIYNI 935
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+GF G+V+ + + + G ++++Y SL+ +A D ++E++ G
Sbjct: 936 LINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTG 995
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ +++GL +++ + + G + L+ G V++
Sbjct: 996 LYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAG 1055
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ E L P V ++ +IR Y++S D RM G S
Sbjct: 1056 KLYEELQFIGLEPNVFT--YNALIRGYSMSGNSDSAYAVYKRMMVGGCS 1102
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
GD+V +L + ++ K + TY G G + + AGF +N +
Sbjct: 141 GDMVVVFNLMQ----NQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYS 196
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LIH L++ Y M+ G+ PS+ ++ RR + VKS L+ +
Sbjct: 197 YNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEME 256
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G K N ++ GR+DE ++ + P+V+ ++ +I + +
Sbjct: 257 SLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVT--YTVLIDALCTAGK 314
Query: 337 LDD 339
LDD
Sbjct: 315 LDD 317
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 66/176 (37%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D +V +I + A S+F KP ++Y+ I GF + N +
Sbjct: 753 DGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNL 812
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ AG + +V TY L+ K+ + + YE+M+ P+ ++ L
Sbjct: 813 FTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVK 872
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
LD+ L+ G + L+ + GR++E +E E + P
Sbjct: 873 SNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRP 928
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 6/234 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ VF + A+G +PD ++ LI G + A+ LF M+
Sbjct: 153 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN+ TY++ ISGF +G +D G S +V TY +L++G K
Sbjct: 213 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL 272
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M G+ P + +++GLC +L L + +
Sbjct: 273 DDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHF---FSGIIRLYALSDRLDDVE 341
+ YC R ++LEE + + + P ++ F G+ ++ S+ ++ VE
Sbjct: 333 LDGYC---RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVE 383
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 4/244 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L KM K Y LI+ K + A + M G PD + +LI S
Sbjct: 104 LSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKS 163
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQ 215
AL +FE +V + ++P+ TY I G G + + I +G + N
Sbjct: 164 KKSDDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV 222
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + D E M G P + ++ G C +LD L +
Sbjct: 223 TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM 282
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
G + L+ C R+ + L + + + SP V + ++ I+ Y ++
Sbjct: 283 TRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV--YTYNTILDGYCRAN 340
Query: 336 RLDD 339
+L++
Sbjct: 341 QLEE 344
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 15/252 (5%)
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
MV++ + TY + I G + ++ + ++ GF +V TY ++IH
Sbjct: 1 MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+F EEM + + P++ +++GLC ++D + L +
Sbjct: 61 RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTY-N 119
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C+ R E + LE + P++ ++ +I + S + DD R+
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFT--YTTLITGFCKSKKSDDAL----RVF 173
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIK-GSYKLRRATYDFLVAGYRR 403
+Q ++ DV C RL DLF IK GS TY+ L++G+ R
Sbjct: 174 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCR 233
Query: 404 AGLSGKLDSVIN 415
GK+D +N
Sbjct: 234 M---GKMDEAMN 242
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 4/190 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ + A + M +G+ PD F SL+ LC + ++ + + P
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG-LCRENRLSDAVHILGEMRRKSCSPTV 326
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ + G+ ++ K+ + NV ++ +I G K EE
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMDC--PPNVVSFNIMIRGLCKVNRSSEAMELVEE 384
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P + + V++GLC +K+D + + K L G N L+ C G
Sbjct: 385 ARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAG 444
Query: 299 RVDELEEQLE 308
+D +E
Sbjct: 445 MLDRARGYIE 454
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 91/286 (31%), Gaps = 91/286 (31%)
Query: 155 CSGDVVTALSLFEIMVS---------------SEEYKPNSKTYDAFISGFSSLGNVDAMN 199
CS D VT SL + + S+ + P+ TY A I +
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66
Query: 200 KWYAANIAAGFSVNVQTYE----------------------------------SLIHGSL 225
K+ + NV TY SLI G
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD------------------- 266
KA EEM+ G IP I ++ G C +K D
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186
Query: 267 -------------RVKS----FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
R+K F + + G N L+ +C +G++DE LE
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP+V+ + +G +L RLDD + +M ++GL+
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLA----RLDDAYDLLNQMTRKGLT 288
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV AM + + PD ++ ++I V A ++ M+ PNS
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G + G +D + I G N+ TY LI KA + ++
Sbjct: 431 ITYSTLITGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDD 486
Query: 240 MMSLG 244
M+ G
Sbjct: 487 MVQRG 491
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 18/304 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI P + ++S+I C + + A +++++ P+ T++ I
Sbjct: 310 AEELYDEMLPRGIIPSTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPDIITFNTLI 368
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ VD K AG N TY +LIHG + D ++ +EM+S G+
Sbjct: 369 AGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC 428
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL----- 297
P++ +L+GLC KL K + I+ N + V+ Y L
Sbjct: 429 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLI 488
Query: 298 --GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
G+ E EE E + P+ + ++ +I RLD+ MG + S
Sbjct: 489 NEGKFLEAEELYEEMPHRGIVPDTIT--YNSVIHGLCKQSRLDEATQMFDSMGSKSFS-P 545
Query: 356 SAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSV 413
+ +I Y + D L+LF + + TY L+ G+R+ G ++G LD +
Sbjct: 546 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALD-I 604
Query: 414 INEM 417
EM
Sbjct: 605 FQEM 608
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ +NS+I + A +F+ M S
Sbjct: 482 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSM-GS 540
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LIHG K + +
Sbjct: 541 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNING 600
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EMM+ G+ P + +L GL ++ +L R + L+ L
Sbjct: 601 ALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDL 643
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 11/225 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY---- 182
A+ + M G++P+ + +++ GD V+AL+L M KPN +
Sbjct: 198 AVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLER 257
Query: 183 -DAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
I+GF S G + + S +V TY +LI+ +K F + Y+EM
Sbjct: 258 RTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEM 317
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ GIIPS +++G C + +LD + + G + L+ YC RV
Sbjct: 318 LPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRV 377
Query: 301 DELEEQLETLTKCNQ-----SPEVLLHFFSGIIRLYALSDRLDDV 340
D+ + L +T+ + L+H F + L A D L ++
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 422
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 12/212 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + LIA + + V + + M G+ ++ + +LI GD+
Sbjct: 355 KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNA 414
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAA----------GF 210
A L + MVSS PN T + + G G + DA+ + A + G
Sbjct: 415 AQDLLQEMVSSG-VCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGV 473
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+VQTY LI G + F + YEEM GI+P V+ GLC + +LD
Sbjct: 474 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQ 533
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + N L+ YC+ GRVD+
Sbjct: 534 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 565
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 7/231 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVF-----NSL 149
LD+ML+ G + Y ++ K+ + A+++ ME IKP+ ++ +
Sbjct: 202 LDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCM 261
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I SG A L + M+ ++ P+ TY+A I+ F G + Y + G
Sbjct: 262 INGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 321
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ TY S+I G K D+ + + M + G P I ++ G C +++D
Sbjct: 322 IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGI 381
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L + G N L+ +C++G ++ ++ L+ + P V+
Sbjct: 382 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV 432
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 8/248 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
T LQ + K A + + LD M++ N C A GKV AM VF+ M
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ---AMLVFSKM 400
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNSLIHSLCIFDK 459
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
D + + G ++ + S+I K ++ ++ M+ +G+ P I
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++G C K+D L ++ G K + L+ YC++ R+++ +
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 315 QSPEVLLH 322
SP+++ +
Sbjct: 580 VSPDIITY 587
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + PN + I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILI 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ G VD ++ G + + TY ++I K+ + R++E+M+ +
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC K D+ K + +L G ++ ++ +C+ GRV E E+
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + P+++ +S +I Y L+ ++D+ + M G+
Sbjct: 502 FDLMVRIGVKPDIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 545
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +GI D+ FNS+I + G V+ + LF++MV KP+ TY I
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLI 521
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K A+ ++ G + TY +LI+G K + + EM S G+
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641
Query: 307 LETL 310
+ L
Sbjct: 642 FQNL 645
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G P+ +N L+ AL L ++M + P+ +Y I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G++D Y + G NV TY S+I KA+ D M+ G++P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G C+ + FLK + G + + L+ C+ GR E + +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++TK PE+ + +++ YA L ++ + M + G+ + ++IC+Y
Sbjct: 329 SMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI-HPNHYVFSILICAYA 385
Query: 369 RCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 386 KQGKVDQAMLVFSKMR 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V TSM G+ P+ +NS++ SG A+ + M
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM- 295
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G + TY +L+ G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P+ + ++ + K+D+ + G + +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I + D+ D + + M +
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIV--YNSLIHSLCIFDKWDKAKELILEMLDR 473
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
G+ F S D C R ++L DL ++ K TY L+ GY
Sbjct: 474 GICLDTIFFNSIIDSH---CKEGRVIESEKLFDLM---VRIGVKPDIITYSTLIDGY--- 524
Query: 405 GLSGKLD 411
L+GK+D
Sbjct: 525 CLAGKMD 531
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L+LE LD+ + CLD + +I K V + +F M G+KPD
Sbjct: 462 KAKELILEM-LDRGI-----CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+++LI +G + A L MVS KP+ TY+ I+G+ + ++ +
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPDCVTYNTLINGYCKISRMEDALVLFRE 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++G S ++ TY ++ G + R + Y + G + +L GLC
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
D + L ++ ++ ++GR DE ++ L+ P+V
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 145/357 (40%), Gaps = 15/357 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
D+F +NS +I ++ ++A+ L L++ L+ N Y I K
Sbjct: 494 DVFCYNS------LIIGFCKAKRMEEARTYLMEMLERRLRPNAHT---YGAFIDGYSKAG 544
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A F M + G+ P+ ++ +LI G+V A S+F ++S + + +TY
Sbjct: 545 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTY 603
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G S G + ++ G N TY SLI GS K + D + EEM
Sbjct: 604 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCI 663
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P I +++GLC +++R K+ + G G N +V YC+
Sbjct: 664 KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTA 723
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ LE + P+ + ++ I+ ++ + M ++G F S
Sbjct: 724 AFQLLEEMLLRGVPPDAFI--YNVILNFCCKEEKFEKALDLFQEMLEKG--FASTVSFNT 779
Query: 363 VICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I Y + + L+ I+ + TY L+ +AG+ G+ + EM+
Sbjct: 780 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 836
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V + + M QGI PD +NSLI C + + + +
Sbjct: 463 YTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG-FCKAKRMEEARTYLMEM 521
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN+ TY AFI G+S G ++ ++++ ++ G NV Y +LI G K +
Sbjct: 522 LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNV 581
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++S ++ + ++ GL K+ L G N L
Sbjct: 582 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 641
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C+ G VD+ + LE + +P+++ +
Sbjct: 642 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 673
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 108/264 (40%), Gaps = 10/264 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIA 116
L+ +D+ +++ALI ++ + +R+ D+M+ G E+ L + L+
Sbjct: 309 LEMIDV-GLKPEPITYNALIDGFM----RQGDIEQAFRIKDEMVACGIEANLIIWNTLLN 363
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEY 175
K + A+ + M +G++PDS + SL+ C G ++ A L + M +
Sbjct: 364 GVCKAGKMEKALEIMQEMMEKGVEPDSQTY-SLLIEGHCRGQNMARAFELLDEM-KKRKL 421
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P TY I+G GN+ N + G N Y +L+ K +
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
E M GI+P + ++ G C ++++ +++L +L + N + + Y
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541
Query: 296 ELGRVDELEEQLETLTKCNQSPEV 319
+ G ++ + + C P V
Sbjct: 542 KAGEMEIADRYFNEMLSCGVLPNV 565
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 2/192 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA ++ K +N A + M +G+ PD+ ++N ++ C AL LF+ M+
Sbjct: 708 YAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 767
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E+ ++ +++ I G+ G + N I F N TY SLI + KA
Sbjct: 768 --EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 825
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R + EM ++P+ +L G + V + + ++ G + ++ +
Sbjct: 826 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 885
Query: 291 VKCYCELGRVDE 302
+ YC G V E
Sbjct: 886 IDAYCREGNVME 897
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/427 (19%), Positives = 163/427 (38%), Gaps = 58/427 (13%)
Query: 38 SSSNPLISRLLQVPVSQIKTTLDSVDIF------AFNSSQFSWDALITSLQSSSPKKAQL 91
S N +I +L ++ +++V++F F S S ++L+ L K ++
Sbjct: 141 GSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLL----KGNKV 196
Query: 92 VLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
L W++ + ++ D Y +I+ KV NV A V M +G P+ +N +
Sbjct: 197 ELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVI 256
Query: 150 ICACLCSG----------------DVVTALSLFEIMVS-------SEE------------ 174
I LC +V L ++I+++ S E
Sbjct: 257 IGG-LCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG 315
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KP TY+A I GF G+++ + +A G N+ + +L++G KA +
Sbjct: 316 LKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKAL 375
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+EMM G+ P ++EG C + + R L + ++
Sbjct: 376 EIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 435
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C G + L + P ++ ++ ++ +A R+++ + RM +QG+
Sbjct: 436 CRCGNLQGTNAILREMVMNGLKPNAVV--YTTLMTAHAKEGRVEESRMILERMREQGI-- 491
Query: 355 KSAEDV---EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
DV +I + + + +L + ++ + TY + GY +AG
Sbjct: 492 --LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549
Query: 411 DSVINEM 417
D NEM
Sbjct: 550 DRYFNEM 556
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 5/224 (2%)
Query: 69 SSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
+S S++ LI +S ++A +LE ++K N Y LI + K + A
Sbjct: 772 ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVT---YTSLIDHNCKAGMMGEA 828
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
++ M+ + + P + + SL+ G++ +LFE MV+ + +P+ TY I
Sbjct: 829 KRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA-KGIEPDKMTYYVMID 887
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ GNV K + G ++V Y++LI K +F V + E+ G
Sbjct: 888 AYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRL 947
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+P + G +D L+ ++ GW N LV
Sbjct: 948 GLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLV 991
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+Q A H+ M + P+ + SLI +G + A L+ + + P
Sbjct: 787 SGKLQE---ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW-LEMQERNVMP 842
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+KTY + + G+ ++GN+ ++ + +A G + TY +I + + +
Sbjct: 843 TAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLK 902
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+E++ G+ S+ + +++ LC + + V L + G+++ + + +
Sbjct: 903 DEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIA 962
Query: 298 GRVDELEEQLETLTK 312
G +DE E L ++ K
Sbjct: 963 GNMDEAAEVLRSMVK 977
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 10/277 (3%)
Query: 128 MH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH + M G +PD +FN LI A G V A+ F M + PN TY +
Sbjct: 330 MHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKM-RQQGLHPNIVTYGTVM 388
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G VD + I+ G + N + +LIHG +D + EM+ GI
Sbjct: 389 DALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGIC 448
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +L LC + R K+ ++ + + L+ YC G+VDE +
Sbjct: 449 PNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKL 508
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE + P + ++ II Y + R++D +M +G++ ++
Sbjct: 509 LEGMVLDGVKPNEVT--YNTIINGYCKNGRIEDACSLFRQMASKGVN-PGIVIYSTILHG 565
Query: 367 YF---RCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
F R AA L L++ IK KL TY+ ++ G
Sbjct: 566 LFQTRRIAAAKELYLWM--IKCGIKLPIGTYNIILQG 600
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 10/228 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI---ALSGKVQNVPFAMHVFTSMEAQ 137
L+ KA + + LD+ + N C+ Y CL+ SGK + A+ +F M
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPN--CI-TYNCLLHGYCSSGKPKE---AIGIFRKMCRD 270
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G++PD +N+L+ +G + A +F+ MV + +KP+S Y + G+++ G +
Sbjct: 271 GVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVK-KGHKPDSSIYGTLLHGYATEGYLVQ 329
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
M++ + G + + LI K D + +M G+ P+I V++
Sbjct: 330 MHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMD 389
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
LC K+D S L+ G N + + L+ C + D+ EE
Sbjct: 390 ALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEE 437
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +GI P++ FN+L+ G V A ++F++MV + + + TY I G+ G
Sbjct: 442 MIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVD-VQCDVITYTTLIDGYCLDG 500
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
VD K + G N TY ++I+G K + + +M S G+ P I I
Sbjct: 501 KVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYS 560
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+L GL R++ K +++ G K+ +++ C+
Sbjct: 561 TILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQ 603
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 5/222 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY---KPNSKTYDAFISGFS 190
M A G P++ +N L+ AL L M++ + P+ +Y I+G
Sbjct: 158 MPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLL 217
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G +D + + G S N TY L+HG + + +M G+ P +
Sbjct: 218 REGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVV 277
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC + + ++ G K + ++ L+ Y G + ++ + L+ +
Sbjct: 278 TYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVM 337
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P+ + F+ +I YA +D+ + +M +QGL
Sbjct: 338 VRNGTQPD--HYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 3/223 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F SM +GIKP + + LI G + S ++MV + P+ ++ F S ++
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG-LSPDHHIFNIFFSAYA 385
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G +D + G S NV Y +LI K D + + +M++ G+ P+I
Sbjct: 386 KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 445
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ ++ GLC K +R + + +L G N L+ C +GRV E ++ +
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 505
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P+ ++ +I Y L+ R D+ E M GLS
Sbjct: 506 EHVGVRPDAF--SYTPLISGYCLTGRTDEAEKVFDGMVSIGLS 546
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QGI P++ FN+LIC G V+ L ++M +P++ +Y ISG+ G
Sbjct: 470 MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM-EHVGVRPDAFSYTPLISGYCLTG 528
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
D K + ++ G S TY +L+HG A D + EM+ G+ P +
Sbjct: 529 RTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYN 588
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L GL ++ K ++ G K + ++ C+ VDE + ++L
Sbjct: 589 TILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSL 645
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 24/293 (8%)
Query: 95 WRLD-----KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
WR+D ++LKG C G+ +V + M G PD+ + L
Sbjct: 121 WRMDHIAINQLLKG--------LCHGKRVGEAMDV-----LLQRMPELGCMPDTVSYTIL 167
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+ AL L +M + PN +Y I+GF + G VD + I
Sbjct: 168 LKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMID 227
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G +V TY ++I G KA+ FD + +++M+ G P+ ++ G + K
Sbjct: 228 RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKE 287
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
V L+ + G K + L+ C+ GR E +++ + P+V + +
Sbjct: 288 VVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKV--STYGIL 345
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLF 379
I YA L ++ + M + GLS + +Y +C D+ +D+F
Sbjct: 346 IHGYATKGALSEMHSFLDLMVENGLS-PDHHIFNIFFSAYAKCGMIDKAMDIF 397
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 8/281 (2%)
Query: 41 NPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLD 98
N LI L V V + + +D ++ FS+ LI+ + +A+ V + +
Sbjct: 483 NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVS 542
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
L E Y L+ + A +F M +G+ P +N+++ +
Sbjct: 543 IGLSPTEV---TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 599
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
A L+ M++S K + TY+ ++G VD K + + + G +N+ T+
Sbjct: 600 FSEAKELYLNMINSGT-KCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 658
Query: 219 SLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+I LK R D++D F + + G++P++ V E L L+ S +
Sbjct: 659 IMIGALLKGGRKEDAMDLF-AAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEK 717
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G N M LV+ G + L L + N S E
Sbjct: 718 NGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 758
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVS--SEEYKPNSKT 181
A+ +F + FN L+ A CS A+S F MV S++ PN T
Sbjct: 33 ALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCT 92
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDFDSVDRFY 237
Y I F +G+++ + + G+ ++ Q + L HG R +++D
Sbjct: 93 YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGK---RVGEAMDVLL 149
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ M LG +P +L+GLC ++ + L +
Sbjct: 150 QRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMM 187
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 5/247 (2%)
Query: 95 WRLDKMLKGNESCLDEYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+RL ++++G+ D+Y LI K A +F S+E +GIKP++ FNSLI
Sbjct: 272 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 331
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
SG V A E MVS+ P++ TY +FI + + +
Sbjct: 332 LCKSGKVDIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 390
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ Y +IH LK R++ V R + EM+S G P + + C +L+ ++ L
Sbjct: 391 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 450
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRL 330
+ G ++ L+ + +G+ D L+ +T P +F ++R+
Sbjct: 451 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 510
Query: 331 YALSDRL 337
+ D L
Sbjct: 511 RLVEDVL 517
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 14/242 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV AM + M G+ PD+ +N LI G + +A L +M + +
Sbjct: 231 GKVHK---AMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIAD 286
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+A I+ G D + + G N T+ SLI+G K+ D +F E
Sbjct: 287 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLE 346
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK---INENMA-QKLVKCY 294
+M+S G P +E LC + SF+ +L K +N + KL+K
Sbjct: 347 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKER 406
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G V ++ + + CN P+V+ + S +R Y + RL++ E + M K G++
Sbjct: 407 -NYGLVARTWGEMVS-SGCN--PDVVTYTTS--MRAYCIEGRLNEAENVLMEMSKNGVTV 460
Query: 355 KS 356
+
Sbjct: 461 DT 462
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 7/195 (3%)
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N++I + D+ +AL +MV S ++P++ T+++ I G+ VD +
Sbjct: 13 TYNAVIRSLCRRADLASALRYLSLMVRSG-WRPDAYTFNSLIVGYCRTNQVDVARDLFDK 71
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
GF+ +V +Y +LI G + D + EM P + + +++GLC +
Sbjct: 72 MPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGR 127
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ L+ + GW+ + +V C + E EE L+ + + +P V+
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVT--C 185
Query: 325 SGIIRLYALSDRLDD 339
+ +I Y R+ D
Sbjct: 186 TAVINAYCKEGRMSD 200
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA+ E + KG C+ +I K + A+ V M+ +G KP+ +
Sbjct: 161 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 220
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+L+ G V A++L M P++ TY+ I G G++++ +
Sbjct: 221 NALVQGFCNEGKVHKAMALLNKMRVC-GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 279
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + TY +LI+ K D ++ + + GI P+ ++ GLC K+D
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339
Query: 267 RVKSFLKFLLGGG 279
FL+ ++ G
Sbjct: 340 IAWKFLEKMVSAG 352
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 5/193 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M G +PD+ FNSLI + V A LF+ M + + +Y A I
Sbjct: 30 ALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM-PLRGFAQDVVSYAALI 88
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G +D + + ++ Y +L+ G KA + M LG
Sbjct: 89 EGFCETGRIDEAVELFGEMDQP----DMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWR 144
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS V++ C RK + L+ + G ++ YC+ GR+ +
Sbjct: 145 PSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRV 204
Query: 307 LETLTKCNQSPEV 319
LE + P V
Sbjct: 205 LELMKLRGCKPNV 217
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ LF++M E+ PNS TY + + GFS G + + S+N Y
Sbjct: 529 ELTDVFGLFDVM-KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIY 587
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+L+ K++ + M+ G IP + + +L GL + D+ K + +
Sbjct: 588 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAK---EIFMN 644
Query: 278 GGWK---INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
WK +E + + ++ + G D E + L + N P
Sbjct: 645 SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRP 687
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 10/240 (4%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+A I ++ + ++ + + +G+ + T+ SLI G + D +++M
Sbjct: 13 TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G + ++EG C ++D L G + + +M LVK C+ GR
Sbjct: 73 PLRGFAQDVVSYAALIEGFCETGRIDEAVE----LFGEMDQPDMHMYAALVKGLCKAGRG 128
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS--FKSAE 358
+E L + + P ++ ++ + + E + M ++GL+ +
Sbjct: 129 EEGLLMLRRMKELGWRPST--RAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCT 186
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
V C R + R+ L L ++G K TY+ LV G+ G K +++N+M+
Sbjct: 187 AVINAYCKEGRMSDALRV-LELMKLRGC-KPNVWTYNALVQGFCNEGKVHKAMALLNKMR 244
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 7/223 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V++ A V M QG+ P VF+++I SG+V AL ++E MV++ KPN
Sbjct: 315 GRVED---AWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAAR-VKPN 370
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y A I GF+ G + K + + A N+ TY S++ G + +E
Sbjct: 371 VVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWE 430
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ +G +P+ ++ GLC +L K ++G G + ++K C G
Sbjct: 431 EMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSG 490
Query: 299 RVD-ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
VD L + L K + P+V+ + +IR L +D
Sbjct: 491 MVDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMD 533
>gi|125528002|gb|EAY76116.1| hypothetical protein OsI_04043 [Oryza sativa Indica Group]
Length = 390
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IAL G+ +P A+ F S P + N+L+ ACL SG+ A +F+ +
Sbjct: 111 IALFGQAGLLPDAVSTFKS------SPSTRSLNALLFACLVSGNHAEAARVFQTFPDAYS 164
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN+ T++A I F+ G + G N T+ + I G K FD V
Sbjct: 165 VKPNTDTFNAIIKSFAESGTTRSFYSVLDEMCKKGVKPNATTFTTAIAGFYKEERFDDVG 224
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+P+ ++GLC + K+ L ++ G K + L+ +
Sbjct: 225 KVIELMKKHGCGESLPVFNVRVQGLCKLGRSGDAKALLNEMVKKGTKPSWLTYNHLIHGF 284
Query: 295 CELGRVDELEEQLETLTK 312
C+ G ++E + + + K
Sbjct: 285 CKEGDLEEAKRLYKEMAK 302
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ACL++ N A VF + +A +KP++ FN++I + SG + S+ + M
Sbjct: 141 FACLVS-----GNHAEAARVFQTFPDAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEM 195
Query: 170 VSSEEYKPNSKTYDAFISGF------SSLGNV-DAMNKWYAANIAAGFSVNVQ------- 215
+ KPN+ T+ I+GF +G V + M K F+V VQ
Sbjct: 196 CK-KGVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGR 254
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
TY LIHG K D + R Y+EM G++
Sbjct: 255 SGDAKALLNEMVKKGTKPSWLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYM 314
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC D + W + + LV RVDE + +E +
Sbjct: 315 LIYYLCKGGDFDTAVGVYNEIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKM 370
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 17/233 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
D ++ + +++A+I S +S + + VL+ K +K N + + IA K
Sbjct: 161 DAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEMCKKGVKPNATT---FTTAIAGFYKE 217
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPN 178
+ V M+ G VFN + C SGD A +L MV + KP+
Sbjct: 218 ERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGRSGD---AKALLNEMVK-KGTKPS 273
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GF G+++ + Y G + Y LI+ K DFD+ Y
Sbjct: 274 WLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYMLIYYLCKGGDFDTAVGVYN 333
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL------LGGGWKINEN 285
E+ + +P ++ ++ GL ++D K ++ + GWK E+
Sbjct: 334 EIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKMKEKFPDKAEGWKEVED 386
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 8/276 (2%)
Query: 128 MHVFTS-MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH F M G+ PD +FN + CA + A+ +F+ M + PN TY A I
Sbjct: 326 MHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKM-RQQRLSPNIVTYGALI 384
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + I G + ++ + SL++G ++ + + E++ GI
Sbjct: 385 DALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIR 444
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ LC ++ + + +L G + + LV +C GR+DE +
Sbjct: 445 LDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKL 504
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR-MGKQGLSFKSAEDVEMVIC 365
L+ + P+ + ++ ++ Y + R+DD YS+ R M +GL+ ++
Sbjct: 505 LDVIVSIGLKPDKVT--YNTLLHGYCKARRIDDA-YSLFREMLMKGLT-PDVVTYNTILH 560
Query: 366 SYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAG 400
F+ + +L+L I ++ TY+ ++ G
Sbjct: 561 GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIING 596
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 5/207 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F + QGI+ D+ FN+L+C G V+ A L ++M+ +P+ +Y+ +
Sbjct: 431 AEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVG-VRPDVISYNTLV 489
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G +D K ++ G + TY +L+HG KAR D + EM+ G+
Sbjct: 490 DGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLT 549
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L GL + K ++ ++N ++ C+ VDE +
Sbjct: 550 PDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKM 609
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYAL 333
+L S ++ L F+ I + AL
Sbjct: 610 FHSLC----SKDLQLDIFTANIMIGAL 632
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 4/222 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSS 191
M G PD ++ L+ AL L +M + + PN TY I G
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
VD + I G N TY LIHG L + V + +EM + G+ P I
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYI 274
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+L+ LC + ++ ++ G K N + L+ Y G + E+ L+ +
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMV 334
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
SP+ H F+ + YA +D+ + +M +Q LS
Sbjct: 335 GNGVSPD--HHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLS 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 108/258 (41%), Gaps = 12/258 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DIF F+S L+ L + +KA+ + LD+ ++ + + C + G+V
Sbjct: 411 DIFVFSS-------LVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
A + M G++PD +N+L+ +G + A L +++VS KP+ T
Sbjct: 464 ME---AQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG-LKPDKVT 519
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ + G+ +D + + G + +V TY +++HG + F Y M+
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 579
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ +I ++ GLC +D L +++ A ++ + GR +
Sbjct: 580 NSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKE 639
Query: 302 ELEEQLETLTKCNQSPEV 319
+ + T++ P+V
Sbjct: 640 DAMDLFATISAYGLVPDV 657
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 5/214 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P+ + ++I LC +V A +F+ M+ + +PN+ TY I G+ S+G +
Sbjct: 200 PNVVTYTTVIDG-LCKAQMVDRAKGVFQHMID-KGVRPNNHTYTCLIHGYLSIGKWKEVV 257
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ G + Y L+ K ++ ++ GI P++ I +L G
Sbjct: 258 QMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGY 317
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L + SFL ++G G + ++ + Y + +DE + + + SP +
Sbjct: 318 ATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNI 377
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +I R+DD +M +G++
Sbjct: 378 VT--YGALIDALCKLGRVDDAVLKFNQMIDEGMT 409
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 3/209 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K + + A +F M +G+ PD +N+++ +G A L+ M+
Sbjct: 520 YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 579
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARD 229
+S + N TY+ I+G VD K + + + +++ T +I LK R
Sbjct: 580 NSRT-QMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRK 638
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D++D F + + G++P + + E L L+ + + G N M
Sbjct: 639 EDAMDLF-ATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNA 697
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPE 318
LV+ G ++ L L + N S E
Sbjct: 698 LVRWLLHRGDINRAGAYLSKLDEKNFSLE 726
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 45/241 (18%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVS--SEEYKPNSKT 181
A+ +F M FN L+ A CS +SLF M+ S + P+S T
Sbjct: 35 ALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFT 94
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVN-VQTYESLIHGSLKARDFD-SVDRFYEE 239
Y I F +G + + + G+ VN + L+ G A+ D + D
Sbjct: 95 YTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRR 154
Query: 240 MMSLGIIPSI---PILEK-----------------------------------VLEGLCA 261
M G P + IL K V++GLC
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
+ +DR K + ++ G + N + L+ Y +G+ E+ + L+ ++ P+ +
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYI 274
Query: 322 H 322
+
Sbjct: 275 Y 275
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 9/297 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ V + F ++++I SL ++ ++A+L+ ++ L N+ Y LI
Sbjct: 353 LNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDV---TYTILIDG 409
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYK 176
G+ + A + F M GI +NS+I C C G + A LF+ MV + K
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMI-NCQCKFGKMKMAELLFKEMVD-KGLK 467
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P TY + ISG+ G V K Y G + N T+ +LI G + +
Sbjct: 468 PTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKL 527
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++EM+ L I+P+ ++EG C R L ++ G + + L+ C
Sbjct: 528 FDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCS 587
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
GRV E +E + L +Q + L ++ +++ + R+ + + M +GL
Sbjct: 588 TGRVSEAKEFINDLHHKHQRLDELC--YTALLQGFCKEGRIKEALVARQEMVGRGLQ 642
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 9/219 (4%)
Query: 108 LDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LDE Y L+ K + A+ M +G++ D + LI L D + L
Sbjct: 608 LDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRI----L 663
Query: 166 FEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
FE++ + + +P++ Y I GF GN+ +++ I G+ N TY +L++G
Sbjct: 664 FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNG 723
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
KA + ++ M+ IP+ L+ L ++ +L G + N
Sbjct: 724 LFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA-N 782
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L++ YC++G+ E + L+ + P+ + +
Sbjct: 783 TVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITY 821
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/300 (17%), Positives = 116/300 (38%), Gaps = 7/300 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A+ V S+ +G+K D + +L+ + + + + M+ Y P+
Sbjct: 272 KSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELG-YVPSE 330
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
I G +G+++ + G N+ Y S+I+ K + + +
Sbjct: 331 AAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSV 390
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G+ P+ +++G R KLD + ++ G ++ C C+ G+
Sbjct: 391 MAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGK 450
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+ E + + P V ++ +I Y + M +G++ +
Sbjct: 451 MKMAELLFKEMVDKGLKPTVAT--YTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTF 508
Query: 360 VEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ +C + A + LF + ++ TY+ L+ G+ R G + + +++EM
Sbjct: 509 TALICGLCQINKMAEASK--LFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEM 566
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 2/194 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A +F M P+ + + G++ AL L M+
Sbjct: 717 YTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML 776
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
N+ TY+ I G+ +G K I G + TY + I+ K +
Sbjct: 777 QGS--FANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNV 834
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ +E M+ G+ P + ++ C +LDR ++ G K ++ L
Sbjct: 835 DAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSL 894
Query: 291 VKCYCELGRVDELE 304
+ + R+ +++
Sbjct: 895 MVQLAQRARLTQVQ 908
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 8/248 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
T LQ + K A + + LD M++ N C A GKV AM VF+ M
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ---AMLVFSKM 400
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNSLIHSLCIFDK 459
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
D + + G ++ + S+I K ++ ++ M+ +G+ P I
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++G C K+D L ++ G K + L+ YC++ R+++ +
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 315 QSPEVLLH 322
SP+++ +
Sbjct: 580 VSPDIITY 587
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + PN + I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILI 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ G VD ++ G + + TY ++I K+ + R++E+M+ +
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC K D+ K + +L G ++ ++ +C+ GRV E E+
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + P+++ +S +I Y L+ ++D+ + M G+
Sbjct: 502 FDLMVRIGVKPDIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 545
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +GI D+ FNS+I + G V+ + LF++MV KP+ TY I
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLI 521
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K A+ ++ G + TY +LI+G K + + EM S G+
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641
Query: 307 LETL 310
+ L
Sbjct: 642 FQNL 645
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G P+ +N L+ AL L ++M + P+ +Y I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G++D Y + G NV TY S+I KA+ D M+ G++P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G C+ + FLK + G + + L+ C+ GR E + +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++TK PE+ + +++ YA L ++ + M + G+ + ++IC+Y
Sbjct: 329 SMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI-HPNHYVFSILICAYA 385
Query: 369 RCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 386 KQGKVDQAMLVFSKMR 401
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V TSM G+ P+ +NS++ SG A+ + M
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM- 295
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G + TY +L+ G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P+ + ++ + K+D+ + G + +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I + D+ D + + M +
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIV--YNSLIHSLCIFDKWDKAKELILEMLDR 473
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
G+ F S D C R ++L DL ++ K TY L+ GY
Sbjct: 474 GICLDTIFFNSIIDSH---CKEGRVIESEKLFDLM---VRIGVKPDIITYSTLIDGY--- 524
Query: 405 GLSGKLD 411
L+GK+D
Sbjct: 525 CLAGKMD 531
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L+LE LD+ + CLD + +I K V + +F M G+KPD
Sbjct: 462 KAKELILEM-LDRGI-----CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+++LI +G + A L MVS KP+ TY+ I+G+ + ++ +
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPDCVTYNTLINGYCKISRMEDALVLFRE 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++G S ++ TY ++ G + R + Y + G + +L GLC
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
D + L ++ ++ ++GR DE ++ L+ P+V
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMV--SSEEYKPNSKTY 182
A HVF + +G A L CA + A+S + M ++E PN TY
Sbjct: 38 ARHVFDELLRRG---RGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTY 94
Query: 183 DAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFD 231
I GF++LGNV I GF V+ + L+ G R D
Sbjct: 95 GILIGSCCCAGRLDLGFAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSD 144
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++D M LG IP++ +L+GLC + L+ +
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMM 188
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 9/282 (3%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ I +L + S K L+L+ M+ NE + GK++ A VF
Sbjct: 247 TYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIE---VATKVF 303
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + P+S +N+LI +G++ AL L ++MV S +PN TY A ++G
Sbjct: 304 DEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMV-SHGLRPNEVTYGALLNGLYK 362
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ G V+ +Y ++I G K + + ++M+ + + P +
Sbjct: 363 NAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVT 422
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ G K++ K + + G N + L+ YC++G L+E L
Sbjct: 423 FSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGY---LKEALNAYA 479
Query: 312 KCNQSPEVLLHFFSGI-IRLYALSDRLDDVEYSVGRMGKQGL 352
N S V HF + + + +L++ EY + M + GL
Sbjct: 480 VMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGL 521
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 147/361 (40%), Gaps = 54/361 (14%)
Query: 37 VSSSNPLISRLLQVPVSQIKTTLDSVDIF------AFNSSQFSWDALITSLQSSSPKKAQ 90
+ +SNP + LL + + D+V F N S ++ + ++ SL K+ +
Sbjct: 100 ICNSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSL----VKEQK 155
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALS-----GKVQNVPFAMHVFTSMEAQGIKPDSAV 145
+ + W K + C D I L+ GK +N F + ME G+ P +
Sbjct: 156 VDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGF---LLRKMEESGVYPTAVT 212
Query: 146 FNSLI---CA------------CLCSGDVVTALSLFEIMV--------SSEEY------- 175
+N+L+ C C+ S + + + + + S++ Y
Sbjct: 213 YNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMR 272
Query: 176 ----KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
PN TY+ ISGF G ++ K + N TY +LI G +
Sbjct: 273 RNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIG 332
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
R + M+S G+ P+ +L GL + V S L+ + GG +++ ++
Sbjct: 333 EALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMI 392
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G ++E + L+ + K + +P+V+ FS +I + ++++ + + +M K G
Sbjct: 393 DGLCKNGMLEEAVQLLDDMLKVSVNPDVVT--FSVLINGFFRVGKINNAKEIMCKMYKTG 450
Query: 352 L 352
L
Sbjct: 451 L 451
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++E + P+ AV+ SL+ L G AL +FE M++ ++ +P++ ++ I +S
Sbjct: 656 AIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLN-KDVEPDTVAFNVIIDQYSRK 714
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G +N + + N+ TY L+HG K Y++M+ G +P
Sbjct: 715 GKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSW 774
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ G C + D L+++ G I+ L+ +CE +E+++ E + +
Sbjct: 775 HSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCER---NEMKKAFELVKQ 831
Query: 313 CNQ---SPEVLLH--FFSGIIR 329
NQ P V + F+G+IR
Sbjct: 832 MNQFMVIPNVDTYNALFNGLIR 853
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D+ +FN+ + + SG++ A++L MV++ ++ P++ TY I+G G + A
Sbjct: 594 DNVIFNTKLTSTCRSGNLSDAIALINEMVTN-DFLPDNFTYTNLIAGLCKKGKIVAALLL 652
Query: 202 YAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
I G S N Y SL+ G LK + +EEM++ + P +++
Sbjct: 653 SGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYS 712
Query: 261 ARRKLDRVKSFL 272
+ K +V L
Sbjct: 713 RKGKTSKVNDIL 724
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 5/190 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++AL L ++S KA VL+ L+ G+ +Y LI +V N+ AM +
Sbjct: 843 TYNALFNGLIRTSDFHKAHRVLQVLLES---GSVPTNKQYITLINGMCRVGNIKGAMKLQ 899
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M+ GI + ++++ S + A+ + ++M+ + P T+ + +
Sbjct: 900 DEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQ-IIPTVATFTTLMHVYCK 958
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
NV + + ++V Y LI G D ++ + YEEM + P+ I
Sbjct: 959 EANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSI 1018
Query: 252 LEKVLEGLCA 261
+++ CA
Sbjct: 1019 YIVLIDSFCA 1028
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 52 VSQIKTTL---DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE-SC 107
V IK + D + +S + A++ L +S KK + + W LD ML+
Sbjct: 889 VGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANS--KKIENAI-WVLDLMLEMQIIPT 945
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ + L+ + K NV A+ + + ME +K D +N LI +GD+ A L+E
Sbjct: 946 VATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYE 1005
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN 194
M + + PN+ Y I F + GN
Sbjct: 1006 EMKQRDLW-PNTSIYIVLIDSFCA-GN 1030
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYAC 113
+ + L+ + + S S+ A+I L + + + L LD MLK + + + ++
Sbjct: 369 VSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQL---LDDMLKVSVNPDVVTFSV 425
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI +V + A + M G+ P+ ++++LI G + AL+ + +M S
Sbjct: 426 LINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSG 485
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ + T + ++ F G ++ + G N T++ +I+G + D
Sbjct: 486 -HVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKA 544
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+++M S G PS+ +L+GLC ++ F L
Sbjct: 545 FSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRL 586
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
FS+ LI L + +A +L +D G++ + Y L++ K+ + A+ +
Sbjct: 88 FSYSILIAGLCRGQKVDEAAELLNEMIDG---GHQPNVVTYGSLLSGLCKMGKLKEAVDL 144
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F+ M +G PD V+N LI GD+ A LFE M+ + P TY++ +SGFS
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEML-EKGCIPTVFTYNSLLSGFS 203
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + + + G N+ T+ +L+ G K D R + EM SLG P +
Sbjct: 204 RKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G+C++ K + L+ ++ G + L+ Y + G +D + +
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323
Query: 311 TKCNQSPEVL 320
K P+
Sbjct: 324 PKSGLEPDAF 333
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 5/255 (1%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+N S++ L+ L S + V D + G Y L+ + Q
Sbjct: 13 YNHGTLSYNYLLEVLAKSG--RCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEE 70
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A VF M AQG P+ ++ LI A LC G V A L M+ ++PN TY +
Sbjct: 71 ARSVFRGMAAQGCSPNVFSYSILI-AGLCRGQKVDEAAELLNEMIDGG-HQPNVVTYGSL 128
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+SG +G + ++ + G + Y LI G K D R +EEM+ G
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP++ +L G + + RV+S K +L G N L+ +C++G + E
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248
Query: 306 QLETLTKCNQSPEVL 320
+ P+V+
Sbjct: 249 LFLEMRSLGCPPDVV 263
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 61/140 (43%)
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
++ F+ S Y + +Y+ + + G D + Y + AG N TY L+
Sbjct: 1 MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+A+ F+ + M + G P++ ++ GLC +K+D L ++ GG +
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120
Query: 283 NENMAQKLVKCYCELGRVDE 302
N L+ C++G++ E
Sbjct: 121 NVVTYGSLLSGLCKMGKLKE 140
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 73 SWDALITSLQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S++ L+ + S P +AQ +L + + G + Y LI K + A+ +F
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLR---EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLF 320
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ G++PD+ ++++I CLC +G V A +F+ M+++ P++ + G
Sbjct: 321 YEIPKSGLEPDAFSYSTII-DCLCRAGKVGAAFVVFKDMIANGS-APDAAVVIPLVIGLC 378
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ + + A + + Y L++ KA+ D V + E+ G P +
Sbjct: 379 RGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVE 438
Query: 251 ILEKVLEGLCARRKLDR 267
I + +LE L RR D+
Sbjct: 439 ISKVILETL--RRSDDK 453
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 12/225 (5%)
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A +W + + ++ +Y L+ K+ D V Y +M+ G +P+ +L
Sbjct: 2 AFFQWAGSQVH--YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLL 59
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
LC ++ + +S + + G N L+ C +VDE E L +
Sbjct: 60 RSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ 119
Query: 317 PEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF--RCAA 372
P V+ + SG+ ++ L + +D RM +G V V+ F +
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVD----LFSRMVYRGCPPDGV--VYNVLIDGFSKKGDM 173
Query: 373 YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ LF + ++ TY+ L++G+ R G G++ S+ +M
Sbjct: 174 GEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM 218
>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 553
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA LI GK + A+ VF M G++P +N L+ A SG V A +F+ M
Sbjct: 318 YALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQARIVFKSM- 376
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++Y P+ +Y +S + + +++ K++ I GF NV TY +LI G KA D
Sbjct: 377 RRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKANDI 436
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ V YEEM+ GI + IL +++ D ++ K
Sbjct: 437 EKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFK 479
>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 693
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 11/261 (4%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVP-FAMHVFTSMEAQGIKPDSAVFNSLICACL 154
D+ML +G E L ++ +I+ S V ++P AM F M + G++PD++V + +I A
Sbjct: 180 FDEMLQRGVEPNLITFSTIIS-SASVCSLPDKAMEWFEKMPSFGVEPDASVASFMIHAYA 238
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
SG+ AL L+ +E+++ ++ + A I L N D Y G N+
Sbjct: 239 HSGNADMALKLYG-RAKAEKWRVDTAAFSALIKMCGMLENFDGCLSVYNDMKVLGAKPNM 297
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +L++ +A+ YEEM+S G P+ P +L+ C R + K
Sbjct: 298 VTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKE 357
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEE---QLETLTKCNQSPEVLLHFFSGIIRLY 331
+ G G I ++ KL+ ++G D E ++++ C FS +I +Y
Sbjct: 358 MKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWT----FSSMITMY 413
Query: 332 ALSDRLDDVEYSVGRMGKQGL 352
+ S ++ + E + M + G
Sbjct: 414 SRSGKVSEAEGMLNEMIQSGF 434
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V+ M+ G+ + ++N L+ C G A +F M SS +P+S T+ + I
Sbjct: 351 ALGVYKEMKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWTFSSMI 410
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ +S G V I +GF + SLI KA+ D V + +++++ LGI+
Sbjct: 411 TMYSRSGKVSEAEGMLNEMIQSGFQPTIFVMTSLICCYGKAKRTDDVVKIFKQLLDLGIV 470
Query: 247 PS 248
P+
Sbjct: 471 PN 472
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 3/241 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LI + K NV A V +M G++P+ +NSL+ +VV A LF++M+
Sbjct: 304 FSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMI 363
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ +Y I+G+ + +D + + I G + N +Y +LIH +
Sbjct: 364 T-RGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKL 422
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+++M + G +P + +LEG C + L + + + G K N M L
Sbjct: 423 REARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTIL 482
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G ++ + L P+V ++ II LD+ + +M +
Sbjct: 483 IDSMCKSGNLNHARKLFSELFVHGLQPDV--QIYTTIINGLCKEGLLDEALEAFRKMEED 540
Query: 351 G 351
G
Sbjct: 541 G 541
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V A+ +F+ M+A+GI P + SLI LCS S +
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQG-LCSFSRWKEASAMLNEM 292
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S P+ T+ I F GNV G NV TY SL+HG +
Sbjct: 293 TSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEV 352
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++ M++ G P + ++ G C +++D K ++ G N L
Sbjct: 353 VEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ +C+LG++ E E + + P++
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDL 441
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 3/283 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M A+G +PD + ++I G+ A L + M +P+ TY I
Sbjct: 180 ALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM-GEVGCQPDVVTYSTLI 238
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
V+ ++ A G S V +Y SLI G + EM SL I+
Sbjct: 239 DSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIM 298
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++ C + + LK + G + N L+ Y V E +
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P+V +S +I Y + R+D+ + M QGL+ + ++
Sbjct: 359 FDVMITRGCKPDVF--SYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
+ +LF D Y TY L+ G+ + G GK
Sbjct: 417 CQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGK 459
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI V+ + A +F M QG+ P++ + +LI A G + A LF+ M
Sbjct: 374 YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDM- 432
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ TY + GF G + + + A N+ Y LI K+ +
Sbjct: 433 HTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNL 492
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ + + E+ G+ P + I ++ GLC LD + + G NE
Sbjct: 493 NHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNE 546
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 5/220 (2%)
Query: 134 MEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
ME G+ P++ N LI C CL V S+ ++ +P T+ I+G
Sbjct: 117 MELAGLSPNTCTLNILINCFCLMQ-HVDLGFSVLAKVIKLG-LQPTIITFTTLINGLCKA 174
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G + + +A G +V TY ++I+G K + + ++M +G P +
Sbjct: 175 GEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTY 234
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ LC R ++ ++ G L++ C R E L +T
Sbjct: 235 STLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTS 294
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
N P+++ FS +I ++ + + + + M + G+
Sbjct: 295 LNIMPDIVT--FSLLIDIFCKEGNVLEAQGVLKTMTEMGV 332
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ + A +F M G PD ++ L+ G + A LF M
Sbjct: 409 YTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPN Y I GN++ K ++ G +VQ Y ++I+G K
Sbjct: 469 GTY-LKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLL 527
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
D + +M G P+ ++ G + R + + G+ +E
Sbjct: 528 DEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADE 581
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 127/303 (41%), Gaps = 5/303 (1%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDE 110
++I+ + +I NS ++ ++ +K L + DK K G L+
Sbjct: 739 AEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLES 798
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CL+ A+ +F M++ G P++ +N L+ A S + L+ M
Sbjct: 799 YNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM- 857
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +PN+ T++ IS N++ Y ++ FS TY LI G LKA
Sbjct: 858 RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +EEM+ G P+ I ++ G ++D K ++ G + + L
Sbjct: 918 EQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTIL 977
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V+C C GR+DE + E L P+ + + F II S RLD+ M +
Sbjct: 978 VECLCITGRIDEAVQYFEELKLTGLDPDTVSYNF--IINGLGKSRRLDEALSLFSEMKNR 1035
Query: 351 GLS 353
G+S
Sbjct: 1036 GIS 1038
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 14/356 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F + +S++ LI L +A V + + + G + + Y+ L+ G+ +
Sbjct: 196 GFILNAYSYNGLIHLLLPGFCNEALKVYKRMISE---GMKPSMKTYSALMVALGRRGDTR 252
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
M++ M++ G++P+ + I A + + A +F+ M E P+ TY
Sbjct: 253 KIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEM-DDEGCGPDVITYTVL 311
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I + G +D + Y A+ S + TY +L+ K D ++V RF+ EM G
Sbjct: 312 IDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY 371
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++E LC +DR L + G N + ++ + R+DE E
Sbjct: 372 APDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALE 431
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
LE + P + I Y S + M K+G+ +
Sbjct: 432 LLENMESLGVKPTAFSYVL--FIDYYGKSGDPAKAIDTFETMKKRGI----MPSIAACNA 485
Query: 366 SYFRCAAYDRL----DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
S + A R+ D+F D K TY+ L+ Y +AG K +++EM
Sbjct: 486 SLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 115/274 (41%), Gaps = 39/274 (14%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C+ AL G+ + + A +F M+ +G PD + LI A +G + A L+ M +S
Sbjct: 276 CIRAL-GRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRAS 334
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ P+ TY + F +G+++ + +++ G++ +V TY LI K+ D D
Sbjct: 335 S-HSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDR 393
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--------- 283
+ M + GI P++ ++ GL R+LD L+ + G K
Sbjct: 394 AFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453
Query: 284 ---------------ENMAQK-----LVKC------YCELGRVDELEEQLETLTKCNQSP 317
E M ++ + C E GR+ E E+ L KC SP
Sbjct: 454 YYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSP 513
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ + ++ +++ Y+ + ++D + M +G
Sbjct: 514 DSVT--YNMLMKCYSKAGQIDKATQLLSEMISKG 545
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 7/236 (2%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F+ + ++ LI L ++ ++A + E LD N Y LI GK +
Sbjct: 897 FSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI---YNILINGFGKSGEID 953
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
FA +F M +GI+PD + L+ CLC +G + A+ FE + + P++ +Y+
Sbjct: 954 FACELFKKMVKEGIRPDLKSYTILV-ECLCITGRIDEAVQYFEELKLTG-LDPDTVSYNF 1011
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G +D ++ G S ++ TY +LI A D + YEE+ +G
Sbjct: 1012 IINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ PS+ ++ G D+ S K ++ G N +L Y G V
Sbjct: 1072 LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 3/221 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I GK + A+ F +M+ +GI P A N+ + +G + A +F +
Sbjct: 448 YVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLH 507
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+S TY+ + +S G +D + + I+ G +V SLI+ KA
Sbjct: 508 KCG-LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRV 566
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ + + + +L + P++ +L GL K+ + + G N L
Sbjct: 567 DAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSL 626
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+ C + VD + +T N +P+VL + G+IR
Sbjct: 627 LDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+++ G + PFA+ T + G ++ +N LI L G AL +++ M+S E
Sbjct: 176 LSIKGGIGRAPFALRKMTEV---GFILNAYSYNGLI-HLLLPGFCNEALKVYKRMIS-EG 230
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KP+ KTY A + G+ + + G N+ TY I +AR D
Sbjct: 231 MKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAW 290
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
++EM G P + +++ LCA KLD+ K
Sbjct: 291 GIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAK 325
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 7/206 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A +F ++ + P +N L+ G ++ AL LF M S PN+
Sbjct: 562 KAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG-CPPNT 620
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+++ + S VD K + + +V TY ++I+G ++ D F+ +
Sbjct: 621 ITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQ 680
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M + P L ++ G+ ++ D +K ++F+ + N +L++C
Sbjct: 681 MKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEA 739
Query: 299 RVDELEEQLETLTKCN---QSPEVLL 321
++E E L CN Q V+L
Sbjct: 740 EIEEAISFAEILV-CNSVCQDDHVML 764
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 17/305 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+V++ A++ M Q G PD FN+L+ +G V A+ + ++M+ E Y P
Sbjct: 273 GRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ-EGYDP 328
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY++ ISG LG V ++ I S N TY +LI K +
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ S GI+P + +++GLC R + + G + +E L+ C
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 298 GRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G++DE + +Q+E L+ C +S + ++ +I + ++++ + E M G+S
Sbjct: 449 GKLDEALNMLKQME-LSGCARS----VITYNTLIDGFCKANKIREAEEIFDEMEVHGVSR 503
Query: 355 KSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
S ++ +C R D L I K + TY+ L+ + R G K
Sbjct: 504 NSVTYNTLIDGLCKSRRVE--DASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAAD 561
Query: 413 VINEM 417
++ M
Sbjct: 562 IVQAM 566
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 133/287 (46%), Gaps = 12/287 (4%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWR 96
N L++ L + +K ++ +D+ ++ ++++++I+ L + K+A L+
Sbjct: 299 NTLVNGLCKA--GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ + N Y LI+ K V A + + ++GI PD FNSLI +
Sbjct: 357 ITRDCSPNTVT---YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQ 215
+ A+ LFE M S+ +P+ TY+ I S G +D A+N ++ G + +V
Sbjct: 414 RNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVI 471
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + ++EM G+ + +++GLC R+++ + +
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G K ++ L+ +C G + + + ++ +T P+++ +
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ LI SL S L + +++ L G + Y LI K + A +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME--LSGCARSVITYNTLIDGFCKANKIREAEEI 492
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ME G+ +S +N+LI S V A L + M+ E KP+ TY++ ++ F
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIM-EGQKPDKFTYNSLLTHFC 551
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++ A + G ++ TY +LI G KA + + + GI +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPH 611
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLL 276
V++GL +RK + + +L
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREML 637
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 6/233 (2%)
Query: 92 VLEWRLDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
V+ W +D LK + + L+ ++ V A M GIKPD + FN LI
Sbjct: 140 VVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIA---HAKMSVWGIKPDVSTFNVLI 196
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
A + + A+ + E M S P+ KT+ + G+ G++D + + G
Sbjct: 197 KALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGC 255
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVK 269
S + + ++HG K + F +EM + G P ++ GLC +
Sbjct: 256 SWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +L G+ + ++ C+LG V E E L+ + + SP + +
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 1/181 (0%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+N AM +F M ++G +PD +N LI + G + AL++ + M S + +
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR-SVI 471
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I GF + + + G S N TY +LI G K+R + + ++M
Sbjct: 472 TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQM 531
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G P +L C + + ++ + G + + L+ C+ GRV
Sbjct: 532 IMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 301 D 301
+
Sbjct: 592 E 592
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KPD+ +N ++ L G+ + + + +S KP+ T++ I +
Sbjct: 149 GLKPDTHFYNRML-NLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G + +T+ +++ G ++ D D R E+M+ G S + ++
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVH 267
Query: 258 GLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C +++ +F++ + G+ ++ LV C+ G V E ++ + +
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 317 PEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
P+V + SG+ +L + + ++ ++ + R
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQMITR 359
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M G +P+ +N+L+ + + SG + A +L ++M+ + KP+ T++ I F
Sbjct: 328 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR-RDCKPSHFTFNLMIDMF 386
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G +D + + G ++ TY +I G+ +A D + E M G P +
Sbjct: 387 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDV 446
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC ++D + L GG+ ++ L+ C+ R+D+ E+ L
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ + +P+V+ ++ +I + +D+LD
Sbjct: 507 MERNGSAPDVVA--YTILIHGFCKADQLD 533
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 4/237 (1%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+I + KV + A +F M +G PD +N +I + + A L E M +
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+ TY++ +SG VD + Y G+ ++V T +LI G K+R D
Sbjct: 442 -CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDA 500
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
++ EM G P + ++ G C +LD+ +F +L G ++
Sbjct: 501 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 560
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
C+ RV + L+T+ + +P+ ++ ++ +I SD D+ Y + ++ KQ
Sbjct: 561 LCKSARVRDGCMLLKTMLERGVTPDAIV--YTSVIDGLCKSDSYDEA-YELYKLMKQ 614
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 39/276 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL---------------- 154
Y+ LI K ++ A + ME +GI P +AV+N++I
Sbjct: 170 YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ 229
Query: 155 --CSGDVVTALSLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNVDA 197
C+ V+T L + + S PN TY+ I+GF LGN+D
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + S +V TY LI G K + +EM+ G P+ +++
Sbjct: 290 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
L K + + +L K + ++ +C++G++D E + +T P
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 409
Query: 318 EVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
++ + SG R ++R+DD + RM + G
Sbjct: 410 DIYTYNIMISGACR----ANRIDDARQLLERMTEAG 441
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 7/255 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFA 127
S F+++ +I K QL L + L +++ D Y I +SG + + A
Sbjct: 375 SHFTFNLMIDMFC----KVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDA 430
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ M G PD +NS++ + V A ++E++ + Y + T I
Sbjct: 431 RQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG-YFLDVVTCSTLID 489
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G +D K G + +V Y LIHG KA D F+ EM+ G +P
Sbjct: 490 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 549
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ V++ LC ++ LK +L G + + ++ C+ DE E
Sbjct: 550 TVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELY 609
Query: 308 ETLTKCNQSPEVLLH 322
+ + + +P V+ +
Sbjct: 610 KLMKQTGCAPTVVTY 624
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 13/171 (7%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D+ A+ F+ YK + T + +S F + + S + TY
Sbjct: 111 DLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITY 170
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI+G KARDF R +EM GI+P + +++GLC ++D +
Sbjct: 171 STLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYR---- 226
Query: 278 GGWKINENMAQK------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ N A LV C+ R+ + LE + + +P V+ +
Sbjct: 227 ---DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 274
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 12/374 (3%)
Query: 36 SVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
S+ + N LI+ L ++ + + LD + + + ++ ++ L A +V
Sbjct: 173 SIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIV-- 230
Query: 95 WRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W + KM++ + E + Y+ +I K + V A+ +F M + GI P +NSLI
Sbjct: 231 W-MKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGM 289
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
SG A LF+ M+ KP+ T+ + G V + I +
Sbjct: 290 CNSGQWKQASILFKEMLE-WNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPD 348
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ TY SLIHG K+ + EM+S I P + ++ C + + +S +
Sbjct: 349 IVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIIN 408
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
++ G + N L+ YC ++DE + + + +P+VL ++ +I+ Y
Sbjct: 409 LMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVL--SYNILIKGYCK 466
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
S+R+D+ + M +GL+ S ++ +C R Y +LF
Sbjct: 467 SERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGR--PYAAKELFKKMGSHGCPPDL 524
Query: 392 ATYDFLVAGYRRAG 405
TY L++G+ + G
Sbjct: 525 ITYSTLLSGFCKHG 538
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 3/186 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G KP FN+LI G +V A+ + ++ S Y+P T+ ++G +G A
Sbjct: 169 GFKPSIITFNTLINGLCIEGRIVEAMEQLDYIM-SRGYQPTVYTHTMIVNGLCKIGKTSA 227
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-DSVDRFYEEMMSLGIIPSIPILEKVL 256
W + V +Y +I K R ++VD FY M S+GI P++ ++
Sbjct: 228 AIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFY-HMRSIGISPTVVTYNSLI 286
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G+C + + K +L K + LV C+ G V E + +
Sbjct: 287 YGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAME 346
Query: 317 PEVLLH 322
P+++ +
Sbjct: 347 PDIVTY 352
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +G PD +N LI S + A LF+ M S + PNS T+ I
Sbjct: 438 ARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEM-SHKGLTPNSITHTTLI 496
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG G A + + + G ++ TY +L+ G K D +E + +
Sbjct: 497 SGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLK 556
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+ I + +L G+C KL+ K L
Sbjct: 557 PNHVICKILLGGMCKAGKLEDAKELFSSL 585
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Query: 104 NESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
N+ C + Y LI K + + A +F M +G+ P+S +LI +G
Sbjct: 447 NKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPY 506
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A LF+ M S P+ TY +SGF G++D + A + N + L
Sbjct: 507 AAKELFKKM-GSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKIL 565
Query: 221 IHGSLKARDFDSVDRFYEEM 240
+ G KA + + +
Sbjct: 566 LGGMCKAGKLEDAKELFSSL 585
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 19/243 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G PD + ++ +I + V A SLFE M P+ TY I
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEM-KRNGIVPSVYTYTILI 502
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + KW+ + G + NV TY +LIH LKA+ D +E M+ G
Sbjct: 503 DSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCK 562
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--------GWKINENMAQ--------KL 290
P++ +++G C ++++ + G +K++ N + L
Sbjct: 563 PNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGAL 622
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ RV E E L+T+ P ++ + +I + +L D + +M ++
Sbjct: 623 VDGLCKANRVKEAHELLDTMLAHGCEPNQIV--YDAVIDGFCKIGKLQDAQEVFTKMSER 680
Query: 351 GLS 353
G S
Sbjct: 681 GYS 683
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 123/316 (38%), Gaps = 36/316 (11%)
Query: 16 YLLMPLRFDRLL----CNTNTNSTSV--------SSSNPLISRLLQVPVSQIKTT----- 58
Y P FD+LL CN N + + L+ RLL V +
Sbjct: 135 YSHTPQVFDKLLDLLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNM 194
Query: 59 ----LDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
L + F + SQ +++ALI L++ A LV L + L +A
Sbjct: 195 ALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAY 254
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSS 172
+ GK + A + EA+ PD+ +N ++ LC + A+ + M SS
Sbjct: 255 SLCKGGKCRE---AFDLID--EAEDFVPDTVFYNRMVSG-LCEASLFEEAMDILHRMRSS 308
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
PN TY +SG G + + + I G N + + SLIH K+RD+
Sbjct: 309 SCI-PNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSY 367
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRK------LDRVKSFLKFLLGGGWKINENM 286
+ +++M+ G P + + +C+ + LD V+ +L G +N+
Sbjct: 368 AYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVN 427
Query: 287 AQKLVKCYCELGRVDE 302
+C C G+ D+
Sbjct: 428 VSNFARCLCGAGKFDQ 443
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 53/288 (18%)
Query: 88 KAQLVLEWR--LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
KA L+ + R D+ML KG + Y LI K + +P A +F M +G KP+
Sbjct: 507 KAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVV 566
Query: 145 VFNSLI---C-------ACL------------------------CSG-DVVTALSLFEIM 169
+ +LI C AC C G +V+T +L + +
Sbjct: 567 TYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGL 626
Query: 170 VSSEEYK---------------PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ K PN YDA I GF +G + + + G+S N+
Sbjct: 627 CKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNL 686
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY S I K D V + +M+ P++ I ++++GLC K D +
Sbjct: 687 YTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLK 746
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N ++ + + G++++ E + +P + +
Sbjct: 747 MEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITY 794
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A + +M A G +P+ V++++I G + A +F M
Sbjct: 619 YGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM- 677
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S Y PN TY +FI +D + K + + + NV Y ++ G K
Sbjct: 678 SERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT 737
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +M G P++ +++G K+++ + + G N + L
Sbjct: 738 DEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C G +DE + L+ + + +L H
Sbjct: 798 INHCCSNGLLDEAYKLLDEMKQTYWPKHILSH 829
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ D +FN++I +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 198 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ +++M+ I P I ++ G C +LD+ K +F+
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + + L+K +C+ RV++ E
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD +NSLI + A +FE MVS + + P+ TY+ I
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 333 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC---LDE 110
IK ++D DIF +NS LI KA+ + E+ + K C LD
Sbjct: 282 IKRSIDP-DIFTYNS-------LINGFCMHDRLDKAKQMFEFMVSK------DCFPDLDT 327
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 388 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G + L
Sbjct: 447 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTL 506
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 507 IRAHLRDGDKAASAELIREMRSC 529
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 9 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 124
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I +++ LC R +D + K + G + N L+ C C GR + + L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 309 TLTKCNQSPEVL 320
+ + +P ++
Sbjct: 245 DMIEKKINPNLV 256
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 3/229 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI K + A +F M G+ P+ N+L+ G + A+ F M
Sbjct: 419 YNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM- 477
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ K N+ TY A I F ++ N++ + + + AG S + Y +LI G +A
Sbjct: 478 QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKL 537
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M G P I ++ G C + KLD LK + G K + L
Sbjct: 538 DRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTL 597
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + + G ++ + K P V+ + +I Y L+ LD+
Sbjct: 598 ISHFSKTGDFSTAHRLMKKMVKEGLVPTVVT--YGALIHAYCLNGNLDE 644
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 7/247 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM---EAQG--IKPDSAVFNSLICACLCSGDVVTALSL 165
+ LI K + V A+ VF M E+ G ++PD +N+LI G L L
Sbjct: 343 FGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGL 402
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
E M S PN+ TY+ I G+ ++A + + G NV T +L+ G
Sbjct: 403 VERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMC 462
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + F+ EM G+ + ++ C +++ +L G +
Sbjct: 463 KHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAI 522
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
+ L+ + G++D L + + SP+++ F+ +I + ++LD+ +
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIV--SFNVLINGFCRKNKLDEAYEMLK 580
Query: 346 RMGKQGL 352
M G+
Sbjct: 581 EMENAGI 587
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 10/219 (4%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
++ +GK+ F V + M+ G PD FN LI + A + + M +
Sbjct: 531 LSQAGKLDRASF---VLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM-ENAG 586
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KP+ TY+ IS FS G+ ++ + G V TY +LIH + D
Sbjct: 587 IKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAM 646
Query: 235 RFYEEMMSLGIIPSIPILEKVL-EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ + +M S +P ++ +L LC + ++D S + + G K N N + K
Sbjct: 647 KIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKG 706
Query: 294 YCELGRVDELEEQLETLTK--CNQ---SPEVLLHFFSGI 327
E + + E ++ +T+ CN + E+L + S +
Sbjct: 707 LQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAV 745
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
K LKGN Y LI V N+ AM +F M G PD+ V+ +LI +G
Sbjct: 480 KGLKGNAVT---YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ A + M + + P+ +++ I+GF +D + AG + TY
Sbjct: 537 LDRASFVLSKMKEAG-FSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYN 595
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+LI K DF + R ++M+ G++P++ ++ C LD
Sbjct: 596 TLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLD 643
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + GK+ N A+ V ++E QG KP+ +N+++ AC SG AL ++E M+
Sbjct: 146 YNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERML 205
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +P + TY A IS + G ++ + + + G NV TY SLI KA +
Sbjct: 206 -ADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRW 264
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM P+ +L CA+ GG WK +++ +++
Sbjct: 265 QLALELLDEMHRDNCKPNTVTFNALLSA-CAQ--------------GGQWKAAQDVFEQM 309
Query: 291 VKCYCE 296
C C+
Sbjct: 310 PSCGCK 315
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 6/179 (3%)
Query: 82 QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
+S P+ A V E +ML G + Y LI+ GK + A+ +F M +G +
Sbjct: 190 RSGQPEHALRVYE----RMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCE 245
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
+ ++SLI AC +G AL L + M + KPN+ T++A +S + G A
Sbjct: 246 RNVITYSSLISACEKAGRWQLALELLDEM-HRDNCKPNTVTFNALLSACAQGGQWKAAQD 304
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + G + +Y LI + + + +EM G P + + V+E L
Sbjct: 305 VFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEAL 363
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 38/320 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ G Q + A+ + M G+ + +++L+ C+ + ++ AL ++ ++
Sbjct: 76 YTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLL 135
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN TY+ I +GN + A G V+TY +++ ++
Sbjct: 136 R-EGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQP 194
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R YE M++ G P+ ++ K++ + ++ G + N L
Sbjct: 195 EHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSL 254
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + GR E L+ + + N P + F+ ++ A Q
Sbjct: 255 ISACEKAGRWQLALELLDEMHRDNCKPNTVT--FNALLSACA-----------------Q 295
Query: 351 GLSFKSAEDV--EMVIC-------SY-FRCAAYDRLDLF------LDHIKG-SYKLRRAT 393
G +K+A+DV +M C SY +A+DR + + LD ++G ++
Sbjct: 296 GGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGV 355
Query: 394 YDFLVAGYRRAG-LSGKLDS 412
Y+ ++ R+G LS +L +
Sbjct: 356 YNVVIEALTRSGVLSAQLKA 375
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 79 TSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
T+L S+ K ++ R+ D + +G E + Y+ LI+ K A+ + M
Sbjct: 217 TALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHR 276
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
KP++ FN+L+ AC G A +FE M S KP++ +Y IS F D
Sbjct: 277 DNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSC-GCKPDAVSYAILISAF------D 329
Query: 197 AMNKW 201
N+W
Sbjct: 330 RGNQW 334
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
FS+ LI L + +A +L +D G++ + Y L++ K+ + A+ +
Sbjct: 88 FSYSILIAGLCRGQKVDEAAELLNEMIDG---GHQPNVVTYGSLLSGLCKMGKLKEAVDL 144
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F+ M +G PD V+N LI GD+ A LFE M+ + P TY++ +SGFS
Sbjct: 145 FSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEML-EKGCIPTVFTYNSLLSGFS 203
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + + + G N+ T+ +L+ G K D R + EM SLG P +
Sbjct: 204 RKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G+C++ K + L+ ++ G + L+ Y + G +D + +
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEI 323
Query: 311 TKCNQSPEVL 320
K P+
Sbjct: 324 PKSGLEPDAF 333
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 141/353 (39%), Gaps = 9/353 (2%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+N S++ L+ L S + V D + G Y L+ + Q
Sbjct: 13 YNHGTLSYNYLLEVLAKSG--RCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEE 70
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A VF M AQG P+ ++ LI A LC G V A L M+ ++PN TY +
Sbjct: 71 ARSVFRGMAAQGCSPNVFSYSILI-AGLCRGQKVDEAAELLNEMIDGG-HQPNVVTYGSL 128
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+SG +G + ++ + G + Y LI G K D R +EEM+ G
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP++ +L G + + RV+S K +L G N L+ +C++G + E
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
+ P+V+ ++ +IR + + + + M + G+ ++I
Sbjct: 249 LFLEMRSLGCPPDVVS--YNTLIRGMCSKGKPHEAQRLLREMIRSGVG-PDIVSYNILID 305
Query: 366 SYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + A D + LF + K + +Y ++ RAG G V +M
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDM 358
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%)
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
++ F+ S Y + +Y+ + + G D + Y +AAG N TY L+
Sbjct: 1 MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+A+ F+ + M + G P++ ++ GLC +K+D L ++ GG +
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQP 120
Query: 283 NENMAQKLVKCYCELGRVDE 302
N L+ C++G++ E
Sbjct: 121 NVVTYGSLLSGLCKMGKLKE 140
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 73 SWDALITSLQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S++ LI + S P +AQ +L + + G + Y LI K + A+ +F
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLR---EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLF 320
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ G++PD+ ++++I CLC +G V A +F+ M+++ P++ + G
Sbjct: 321 YEIPKSGLEPDAFSYSTII-DCLCRAGKVGAAFVVFKDMIANGS-APDAAVVIPLVIGLC 378
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ + + A + + Y L++ KA+ D V + E+ G P +
Sbjct: 379 RGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVE 438
Query: 251 ILEKVLEGLCARRKLDR 267
I + +LE L RR D+
Sbjct: 439 ISKVILETL--RRSDDK 453
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 6/229 (2%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
S PK+A L+ R D G E + Y+ L+ K A +F SM +G++P
Sbjct: 257 SGQPKEAIGTLKKMRSD----GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D A + +L+ G V+ + LF++MV KP+ TY+ I G G +D K
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKL 371
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
A+ ++ G ++ TY +LI+G + D ++EM+S G+ P+I +L+GL
Sbjct: 372 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 431
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
R+ K + G ++ + ++ C+ DE + L
Sbjct: 432 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 480
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
Q + AM V +M G+ PD +NS++ SG A+ + M S+ +PN T
Sbjct: 223 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM-RSDGVEPNVVT 281
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y + ++ G K + + G ++ TY +L+ G K ++ ++ M+
Sbjct: 282 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV 341
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+G+ P I +++G C K+D L ++ G K + L+ YC + R+D
Sbjct: 342 RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMD 401
Query: 302 ELEEQLETLTKCNQSPEVLLH 322
+ + + SP ++ +
Sbjct: 402 DALALFKEMVSSGVSPNIITY 422
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 2/223 (0%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D M K G E + Y L+ K V + +F M G+KPD +N+LI C +
Sbjct: 303 DSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 362
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A L MVS KP+ TY I+G+ + +D + +++G S N+ T
Sbjct: 363 GKMDEATKLLASMVSVG-VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 421
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++ G R + Y + G + +L GLC D + L
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 481
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ ++ + GR+DE ++ + P+V
Sbjct: 482 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 524
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +G KPD +N++I + LC +V F + PN+ TY +
Sbjct: 357 AIRLFKKMEQKGCKPDVVAYNTIIDS-LCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +LG +D + + + N T+ L+ G + +E M G+
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVE 475
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I ++ G C R K++ + + ++G G + + L+ YC R+D+ +
Sbjct: 476 PNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L ++ +P + ++ I++ RL D + +M G+
Sbjct: 536 LTQMSVKKLTPNTVT--YNTIMKGLCYVGRLLDAQELFKKMCSSGM 579
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 5/262 (1%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
K ++ +E + + G+E + Y LI N A+HVF ME G KP+ +N
Sbjct: 178 KIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYN 237
Query: 148 SLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
++I + LC +V A+ MV P++ TY++ + G LG ++ + +
Sbjct: 238 TIIDS-LCKDRLVNDAMDFLSEMVG-RGIPPDAITYNSIVHGLCCLGQLNEATRLFKRME 295
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G +V TY +I K R + F EM+ GI P + +L GLC +L+
Sbjct: 296 QNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLN 355
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FF 324
K + G K + ++ C+ V++ E L + P + +
Sbjct: 356 EAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415
Query: 325 SGIIRLYALSDRLDDVEYSVGR 346
G L L + + VGR
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGR 437
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 7/224 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F ME G KPD +N +I + V A MV + P+ TY +
Sbjct: 287 ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVD-QGIPPDVVTYTTIL 345
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G LG ++ + + G +V Y ++I K R + F EM+ GI
Sbjct: 346 HGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIP 405
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +L G C +LD K ++G N LV C+ G V E
Sbjct: 406 PNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWV 465
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV----EYSVGR 346
ET+T+ P + + ++ ++ Y L ++++ E VG+
Sbjct: 466 FETMTEKGVEPNI--YTYNALMNGYCLRCKMNEARKVFEIMVGK 507
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 106/248 (42%), Gaps = 13/248 (5%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ + K++ +++ M+ G+ N LI CLC + V F +
Sbjct: 95 EFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILI-NCLCRLNHVD----FAVS 149
Query: 170 VSSEEYK----PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
V + +K P+ T+ I+G + G + + Y + +G +V +Y +LI+G
Sbjct: 150 VWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLC 209
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ + + +++M G P++ +++ LC R ++ FL ++G G +
Sbjct: 210 NSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAI 269
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL-DDVEYSV 344
+V C LG+++E + + + P+V+ + II DRL +D +
Sbjct: 270 TYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTY---NIIIDSLYKDRLVNDAADFL 326
Query: 345 GRMGKQGL 352
M QG+
Sbjct: 327 SEMVDQGI 334
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 1/179 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +G PD +N LI S + A +L M S ++ PN+ TY+ +
Sbjct: 497 ARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQM-SVKKLTPNTVTYNTIM 555
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + + ++G + TY L++G K D + ++ M +
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I + ++EG+ KL+ K L G + ++K + G DE E
Sbjct: 616 PDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYE 674
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 10/326 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I K +++ A +F ME +GI+PD +NSLI +CLC
Sbjct: 243 LKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLI-SCLC 301
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 302 NYGRWSDASRLLSNMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
L L EY + K + + +C + D DLF K
Sbjct: 481 LEKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKGVKPNVI 536
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
Y +++G+ R GL + D++ EMK
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMK 562
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A+ + ME I+ D ++N++I
Sbjct: 208 VDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCK 267
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ A +LF M ++ +P+ TY++ IS + G ++ + I + NV
Sbjct: 268 YKHIDDAFALFNKM-ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVV 326
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ Y+EM+ I P I ++ G C +LD K + +
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+K +C+ RV+E E +++
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +P A+ V M G +PD +SL+ S + A++L + MV
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
YKP++ T++ I G + G ++ TY ++++G K D
Sbjct: 178 EM-GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI 236
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D ++M I + I +++GLC + +D + + G + + L
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSL 296
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P V+ FS +I + +L + E M K+
Sbjct: 297 ISCLCNYGRWSDASRLLSNMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 351 GL 352
+
Sbjct: 355 SI 356
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEI 168
E+ L++ K++ + + M+ I D +N LI C C + AL++
Sbjct: 82 EFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILI-NCFCRRSQLPLALAVLGK 140
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ Y+P+ T + ++G+ + + G+ + T+ +LIHG
Sbjct: 141 MMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 199
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
++M+ G P + V+ GLC R +D S LK + G + + +
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259
Query: 289 KLVKCYCELGRVDE 302
++ C+ +D+
Sbjct: 260 TIIDGLCKYKHIDD 273
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 2/216 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ D +FN++I +
Sbjct: 137 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 196
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 197 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 255
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ +++M+ I P I ++ G C +LD+ K +F+
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+ + + L+K +C+ RV++ E ++
Sbjct: 316 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMS 351
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD +NSLI + A +FE MVS + + P+ TY+ I
Sbjct: 273 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLI 331
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 332 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 391
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+ +
Sbjct: 392 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 451
Query: 307 LETLTKCNQSPEVLLH 322
+L+ P V+ +
Sbjct: 452 FCSLSLKGVKPNVVTY 467
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC---LDE 110
IK ++D DIF +NS LI KA+ + E+ + K C LD
Sbjct: 281 IKRSIDP-DIFTYNS-------LINGFCMHDRLDKAKQMFEFMVSK------DCFPDLDT 326
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 327 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 386
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 387 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 445
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G + L
Sbjct: 446 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTL 505
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 506 IRAHLRDGDKAASAELIREMRSC 528
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 3/199 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKT 181
++ ++ + M G +P +SL+ C G ++ A++L + MV Y+P++ T
Sbjct: 59 DLVISLALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTIT 116
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I G + G N+ TY +++G K D D +M
Sbjct: 117 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 176
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ I + I +++ LC R +D + K + G + N L+ C C GR
Sbjct: 177 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS 236
Query: 302 ELEEQLETLTKCNQSPEVL 320
+ + L + + +P ++
Sbjct: 237 DASQLLSDMIEKKINPNLV 255
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 18/286 (6%)
Query: 75 DALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
DA+I ++P+ A L + ++ E L Y + + K +N+ A +F M
Sbjct: 145 DAVIVLNNMTNPETALLAFGFFRKRLKPSREVIL--YNVTLKVFRKCRNLDRAEKLFDEM 202
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSL 192
+G+KPD+ F+++I S A+ FE M E+ P+ TY A I +
Sbjct: 203 LERGVKPDNITFSTIISCARVSSLPNKAVEWFEKM---PEFGCHPDDVTYSAMIDAYGRA 259
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
GNVD K Y + ++ T+ +LI + +FD YEEM +LG+ P++ I
Sbjct: 260 GNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIY 319
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L+ + ++ + K+ K + G + + L++ Y GR E+ L +
Sbjct: 320 NTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAY---GRARYAEDALIVYKE 376
Query: 313 CNQS------PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P+ FS +I +Y+ S ++ + E + M + G
Sbjct: 377 MKEKGSGNCMPDSWT--FSSLITIYSCSGKVSEAEAMLNAMLEAGF 420
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 103/245 (42%), Gaps = 19/245 (7%)
Query: 83 SSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
SS P KA +EW +KM + G Y+ +I G+ NV A+ ++ + +
Sbjct: 224 SSLPNKA---VEW-FEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRI 279
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D F++LI SG+ L+++E M + KPN Y+ + A W
Sbjct: 280 DPVTFSTLIRIYGMSGNFDGCLNVYEEM-KALGVKPNLVIYNTLLDAMGR-----AKRPW 333
Query: 202 YAANIAA-----GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---IIPSIPILE 253
A NI G + TY +L+ +AR + Y+EM G +P
Sbjct: 334 QAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFS 393
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ K+ ++ L +L G++ N + L++CY + R DE+ + L +
Sbjct: 394 SLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLEL 453
Query: 314 NQSPE 318
+ +P+
Sbjct: 454 DITPD 458
>gi|226490900|ref|NP_001141371.1| uncharacterized protein LOC100273462 [Zea mays]
gi|194704218|gb|ACF86193.1| unknown [Zea mays]
gi|414880165|tpg|DAA57296.1| TPA: hypothetical protein ZEAMMB73_527047 [Zea mays]
Length = 393
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IAL G+ +P A+ F S P + N+LI AC+ SG+ A +F+ +
Sbjct: 114 IALFGQAHLLPDAISTFQS------SPSTRSLNALIFACIVSGNHTEAARVFQTFPDAHG 167
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN++T++A I F+ G + + + G N T+ + + G K FD +
Sbjct: 168 VKPNTETFNAIIKSFAESGTIRSFYSVFDEMCKKGLKPNSITFTTALAGFYKEEKFDDIK 227
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+P+ ++ LC + ++ + ++ G K N L+ +
Sbjct: 228 KVLELMKKNGCGESLPVYNVRVQSLCKLGRSGEARALVDEMMKKGTKPNWVTYNHLIYGF 287
Query: 295 CELGRVDE 302
C+ G ++E
Sbjct: 288 CKEGDLEE 295
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 42/236 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+AC+++ N A VF + +A G+KP++ FN++I + SG + + S+F+ M
Sbjct: 144 FACIVS-----GNHTEAARVFQTFPDAHGVKPNTETFNAIIKSFAESGTIRSFYSVFDEM 198
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-------FSVNVQ------- 215
+ KPNS T+ ++GF D + K G ++V VQ
Sbjct: 199 CK-KGLKPNSITFTTALAGFYKEEKFDDIKKVLELMKKNGCGESLPVYNVRVQSLCKLGR 257
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
TY LI+G K D + R Y+EM G++
Sbjct: 258 SGEARALVDEMMKKGTKPNWVTYNHLIYGFCKEGDLEEAKRLYKEMGRKGLVGDSDFYFM 317
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC LD + W + + LV R+DE + +E +
Sbjct: 318 LIYYLCKGDDLDTALGLYNEIAAKNWVPCFSTMKMLVNGLAGSSRIDEAKGIIEKM 373
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPN 178
+ ++ A + M G+ P + + ++++ LCS + +AL LF+ M S P+
Sbjct: 889 RAGDIGTAYELLKEMPRHGV-PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPD 947
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY + G VD + ++ G S NV TY SL+HG KA D +
Sbjct: 948 VFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 1007
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M G P+I +++G C ++D L+ ++ GG + N L+ +C+ G
Sbjct: 1008 RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG 1067
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ ++ +E + + P L ++ ++ ++ D ++
Sbjct: 1068 KAEDAIGLVEVMVEKGYVPN--LFTYNSLLDMFCKKDEVE 1105
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 106/231 (45%), Gaps = 7/231 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI+ + + A +F M +G+K + V S++ +G A+ F M
Sbjct: 164 YSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM- 222
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ P+S TY+ I+G S +D + + GF+ NV +Y +++HG KA
Sbjct: 223 -SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRV 281
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ E+M++ G P + V+ GLC ++D + ++ G + N L
Sbjct: 282 ENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTL 341
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
V +C +G +D E + +T+ P + ++ I+ ++ R +D+E
Sbjct: 342 VDGFCRVGDLDGAVELVRKMTERGYRPNAIT--YNNIMHVFC---RRNDME 387
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 12/300 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y +I K+ + A H+ M G +P+ + L+ A C C G A+ L E+M
Sbjct: 1021 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC-GKAEDAIGLVEVM 1079
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + Y PN TY++ + F V+ + ++ I G NV +Y ++I G KA
Sbjct: 1080 VE-KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 1138
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
E+M+S +P I +++ +C ++D + G N
Sbjct: 1139 VHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNS 1198
Query: 290 LVKCYCELGRVDELEEQLETLT-KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
LV C+ R D+ E L +T K SP+++ ++ +I S R+D +M
Sbjct: 1199 LVHGLCKSRRFDQAEYLLREMTRKQGCSPDIIT--YNTVIDGLCKSKRVDRAYKLFLQML 1256
Query: 349 KQGLSFKSAEDV--EMVICSYFRCAAYDRLDLFLD-HIKGSYKLRRATYDFLVAGYRRAG 405
GL + +DV +VI S + D + L+ +K + TY L+ G+ + G
Sbjct: 1257 SDGL---APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTG 1313
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 110/258 (42%), Gaps = 8/258 (3%)
Query: 97 LDKMLKGNESCLDEYACLIALSG---KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
L++M++ C + ACL L K + A + PD ++ LI A
Sbjct: 428 LEQMIR--RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ + A S ++MV + Y P+ TY++ + G ++ + AAG +
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCY-PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY +IH K + DS + E M +P + ++ GLC +D+ +
Sbjct: 545 VVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQ 604
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+LG G N L+ C++ +V++ E LE + K + +P+ + ++ +I
Sbjct: 605 EMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSIT--YTCLINGLCN 662
Query: 334 SDRLDDVEYSVGRMGKQG 351
+ RL++ + M +G
Sbjct: 663 ASRLEEAWRVLREMKDKG 680
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 2/195 (1%)
Query: 127 AMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ +F ME G PD +++++ + + SG V A L E MVS + PN TY +
Sbjct: 931 ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVS-KGCSPNVVTYSSL 989
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G G +D +G S N+ TY ++I G K D EEM+ G
Sbjct: 990 LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 1049
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ +L+ C K + ++ ++ G+ N L+ +C+ V+ +
Sbjct: 1050 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 1109
Query: 306 QLETLTKCNQSPEVL 320
L ++ + P V+
Sbjct: 1110 LLSSMIQKGCVPNVV 1124
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 5/223 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPN 178
K V A+ + M +G PD + ++I LC D V A + + M+ +PN
Sbjct: 277 KANRVENALWLLEQMVTRGCPPDVVSYTTVING-LCKLDQVDEACRVMDKMIQ-RGCQPN 334
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY + GF +G++D + G+ N TY +++H + D + + +
Sbjct: 335 VITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQ 394
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+ G P ++ G C KL L+ ++ G + + L+ C+
Sbjct: 395 MMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAA 454
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+D +E L + +P+V+ +S +I + RL + E
Sbjct: 455 AIDSAQELLRMSIGMDCAPDVVA--YSILIHALCKAKRLPEAE 495
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 2/211 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IA K V + + M + PD FN++I A + V A LF ++
Sbjct: 1126 YNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 1185
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S PN TY++ + G D A G S ++ TY ++I G K++
Sbjct: 1186 ES-GCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKR 1244
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + + +M+S G+ P V+ LC R +D + L+ +L G+
Sbjct: 1245 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 1304
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ +C+ G +D+ E L+ L P+V+
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPDVV 1335
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 8/253 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMH 129
S++ +I L ++ ++L L++ML N C+ + + +I K V A
Sbjct: 1125 SYNTVIAGLCKATKVHEGVLL---LEQMLSNN--CVPDIVTFNTIIDAMCKTYRVDIAYE 1179
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++ G P+ +NSL+ S A L M + P+ TY+ I G
Sbjct: 1180 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 1239
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
VD K + ++ G + + TY +I K R D + E M+ G P
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 1299
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C LD+ L+ LL G + + + GR+ + E LET
Sbjct: 1300 ITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLET 1359
Query: 310 LTKCNQSPEVLLH 322
+ + P+ + +
Sbjct: 1360 MLRAGLVPDTVTY 1372
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV + A + M ++G P+ ++SL+ +G + A +L + M S P
Sbjct: 961 SGKVDD---ACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG-CSP 1016
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G LG +D + G NV TY L+ K +
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 1076
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E M+ G +P++ +L+ C + +++R L ++ G N ++ C+
Sbjct: 1077 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 1136
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+V E LE + N P+++ F+ II + R+D
Sbjct: 1137 TKVHEGVLLLEQMLSNNCVPDIVT--FNTIIDAMCKTYRVD 1175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 1/182 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
QG PD +N++I S V A LF M+S + P+ TY IS +D
Sbjct: 1223 QGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS-DGLAPDDVTYSIVISSLCKWRFMD 1281
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
N + GF TY +LI G K + D + ++S G P + +
Sbjct: 1282 EANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 1341
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L R +L + L+ +L G + L+K +C+ ++ + E + +C
Sbjct: 1342 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCE 1401
Query: 317 PE 318
P+
Sbjct: 1402 PD 1403
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 5/193 (2%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL F+ S E Y ++ T + + L + Y + S N+ T+ LI
Sbjct: 827 ALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCC--SPNMFTFTILI 884
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL-LGGGW 280
HG +A D + +EM G+ ++ + V++GLC+ RKLD K + G
Sbjct: 885 HGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSC 944
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
+ +V + G+VD+ +E + SP V+ +S ++ + +LD+
Sbjct: 945 PPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVT--YSSLLHGLCKAGKLDEA 1002
Query: 341 EYSVGRMGKQGLS 353
+ RM + G S
Sbjct: 1003 TALLQRMTRSGCS 1015
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 8/248 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
T LQ + K A + + LD M++ N C A GKV AM VF+ M
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ---AMLVFSKM 400
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNSLIHSLCIFDK 459
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
D + + G ++ + S+I K ++ ++ M+ +G+ P I
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++G C K+D L ++ G K + L+ YC++ R+++ +
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 315 QSPEVLLH 322
SP+++ +
Sbjct: 580 VSPDIITY 587
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + PN + I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILI 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ G VD ++ G + + TY ++I K+ + R++E+M+ +
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC K D+ K + +L G ++ ++ +C+ GRV E E+
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + P+++ +S +I Y L+ ++D+ + M G+
Sbjct: 502 FDLMVRIGVKPDIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 545
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +GI D+ FNS+I + G V+ + LF++MV KP+ TY I
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLI 521
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K A+ ++ G + TY +LI+G K + + EM S G+
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641
Query: 307 LETL 310
+ L
Sbjct: 642 FQNL 645
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G P+ +N L+ AL L ++M + P+ +Y I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G++D Y + G NV TY S+I KA+ D M+ G++P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G C+ + FLK + G + + L+ C+ GR E + +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++TK PE+ + +++ YA L ++ + M + G+ + ++IC+Y
Sbjct: 329 SMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI-HPNHYVFSILICAYA 385
Query: 369 RCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 386 KQGKVDQAMLVFSKMR 401
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V TSM G+ P+ +NS++ SG A+ + M
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM- 295
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G + TY +L+ G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P+ + ++ + K+D+ + G + +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I + D+ D + + M +
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIV--YNSLIHSLCIFDKWDKAKELILEMLDR 473
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
G+ F S D C R ++L DL ++ K TY L+ GY
Sbjct: 474 GICLDTIFFNSIIDSH---CKEGRVIESEKLFDLM---VRIGVKPDIITYSTLIDGY--- 524
Query: 405 GLSGKLD 411
L+GK+D
Sbjct: 525 CLAGKMD 531
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L+LE LD+ + CLD + +I K V + +F M G+KPD
Sbjct: 462 KAKELILEM-LDRGI-----CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+++LI +G + A L MVS KP+ TY+ I+G+ + ++ +
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPDCVTYNTLINGYCKISRMEDALVLFRE 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++G S ++ TY ++ G + R + Y + G + +L GLC
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
D + L ++ ++ ++GR DE ++ L+ P+V
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMV--SSEEYKPNSKTY 182
A HVF + +G A L CA + A+S + M ++E PN TY
Sbjct: 38 ARHVFDELLRRG---RGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTY 94
Query: 183 DAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFD 231
I GF++LGNV I GF V+ + L+ G R D
Sbjct: 95 GILIGSCCCAGRLDLGFAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSD 144
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++D M LG IP++ +L+GLC + L+ + G
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
Length = 800
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 10/258 (3%)
Query: 97 LDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
LD+M KG + +D Y LI V + A VF ME +G++PD FN L+ A
Sbjct: 432 LDEM-KGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFS 490
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G AL L+E M S++ KPN+ T++ I G G V ++ N+ ++
Sbjct: 491 RRGLANEALKLYEYM-KSQDLKPNAITHNVMIEGLCIGGKVTEAEAFFC-NME---DKSI 545
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
Y ++I G +A+ + + E+ G++ + K+LE LC + DR LK
Sbjct: 546 DNYGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIYKLLEKLCEEGEKDRALWLLKT 605
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+L + +++M K++ G + E + L K +P++ ++ +I +
Sbjct: 606 MLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILRKSGLTPDIFT--YTTMINVCCRQ 663
Query: 335 DRLDDVEYSVGRMGKQGL 352
+RL + M +G+
Sbjct: 664 NRLSEARNLFQDMKHRGI 681
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 145 VFNSLICACLCSGDVVTAL-SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
V+++L+ + + +G + A+ +LF+I + P+ T++ ++ + G VDA Y
Sbjct: 166 VYDALVKSYVTAGMLDEAINALFQI--KRRGFLPHIFTFNYLMNKLIANGKVDAALAIYK 223
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G + N TY +I + ++EM G+IP+ +EGLCA +
Sbjct: 224 QLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQ 283
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ D L+ G I+ +++ +C ++D E L + K
Sbjct: 284 RSDFGYQVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEK 332
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 9/189 (4%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ ++ +++ G+ P+ ++ +I A G +V A ++F+ M PN+ Y
Sbjct: 215 VDAALAIYKQLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVI-PNAYAYT 273
Query: 184 AFISGFSSLGNVD----AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+I G + D + W NI ++V Y ++I G D + +
Sbjct: 274 TYIEGLCANQRSDFGYQVLQAWKEGNIP----IDVYAYVAVIRGFCNEMKMDRAEVVLGD 329
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M +I +++ G C L + + + G K N + +++ +CE G
Sbjct: 330 MEKQELISDARCYSELIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGM 389
Query: 300 VDELEEQLE 308
++ E+ +
Sbjct: 390 HSQVVEEFK 398
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 131/317 (41%), Gaps = 12/317 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K+ + A VF M +KP+ +N++I GD+ +A +F+ M+
Sbjct: 197 YTTMIRGYCKMGMIENAKKVFDVMT---VKPNLLAYNTMINGFCKKGDMESARLVFDRMM 253
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S E+ PN TY I G+ G ++ K + G N TY ++I+G
Sbjct: 254 SGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRV 313
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M G ++ + +L+GLC K D+ +L+ ++ + + +
Sbjct: 314 DEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVV 373
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C++G+ DE L+ + P V F+ + R+ + LD + +M Q
Sbjct: 374 INGFCKIGKSDEAISLLKEMRARGLKPTVF--SFNAVFRILVENGELDRAILLLKQM-PQ 430
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+ +IC C A R+ DL I+ + L Y L+ GY G
Sbjct: 431 MDCLPNFVSYNTIICGL--CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGN 488
Query: 407 SGKLDSVINEMKFAEYM 423
+ + +EM +Y+
Sbjct: 489 VENVMQIAHEMVTKKYV 505
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 8/192 (4%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF--NSLICACLCSGDVVTALSLFEIMVS 171
LI G NV A +F +A+ I+ + ++ NSL+ + + A F +V
Sbjct: 129 LIKAYGDRGNVKAA--IFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIVK 186
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
P+ TY I G+ +G ++ K + N+ Y ++I+G K D +
Sbjct: 187 ENVVPPDVSTYTTMIRGYCKMGMIENAKKVFD---VMTVKPNLLAYNTMINGFCKKGDME 243
Query: 232 SVDRFYEEMMS-LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
S ++ MMS +P+ +++G C + +L+ K + ++ G + NE +
Sbjct: 244 SARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAM 303
Query: 291 VKCYCELGRVDE 302
+ C GRVDE
Sbjct: 304 IYGLCINGRVDE 315
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
V+E ++ +K E ++ + C I S + A+ + M A+G+KP FN++
Sbjct: 358 VMEANMNPDVKSYEVVINGF-CKIGKSDE------AISLLKEMRARGLKPTVFSFNAVFR 410
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS-SLGNVDAMNKWYAANIAAGF 210
+ +G++ A+ L + M + PN +Y+ I G + G + + I +G
Sbjct: 411 ILVENGELDRAILLLKQM-PQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRSGH 469
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+++ Y L+ G + + ++V + EM++ + + +++ LCA+ K+
Sbjct: 470 NLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKV 524
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 15/268 (5%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKV 121
DI +FN+ LI + S + L +E LD++ K G + Y LI+ +
Sbjct: 298 DIVSFNT-------LINAKVKSCATVSGLAIEL-LDEVGKFGLRPDIITYNTLISACSRE 349
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
N+ A+ VF+ ME+ +PD +N++I G + A LFE + S + P++ T
Sbjct: 350 SNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFE-KLKSNGFSPDAVT 408
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y++ + FS GN + + + GF + TY ++IH K D R Y +M
Sbjct: 409 YNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMK 468
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
S G P +++ L K++ + +L G K + L+ Y ++GR
Sbjct: 469 SSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRV 528
Query: 302 ELEEQLETLTKCNQSPE-----VLLHFF 324
E EE + + + V+L FF
Sbjct: 529 EAEETFNRMRESGIKADHLAYSVMLDFF 556
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 131/308 (42%), Gaps = 5/308 (1%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+I GK++ A + ++ + K D V+N+LI A SG A ++F M+ E
Sbjct: 795 IIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR-E 853
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P ++ + + G + + ++ + ++ +A + V
Sbjct: 854 GPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEV 913
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ Y M + G P++ + ++ LC +++ V+ L + G+K + + ++K
Sbjct: 914 QKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKL 973
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
Y + + + + +P+ ++ +I +Y R ++ + +M GL
Sbjct: 974 YSSIEEFQNMGVIYQMIQDAGLAPDE--ETYNTLITMYCRDHRPEEGLSLMHKMKSLGLE 1031
Query: 354 FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDS 412
K + +I ++ + YD+ + + ++ + YKL R+ Y ++ YR +G K ++
Sbjct: 1032 PKR-DTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAEN 1090
Query: 413 VINEMKFA 420
++ MK A
Sbjct: 1091 LLEIMKEA 1098
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 66/352 (18%), Positives = 128/352 (36%), Gaps = 54/352 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI------CACLCS-------- 156
Y ++ + + N +F M +G +PD FN+LI CA +
Sbjct: 267 YNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDE 326
Query: 157 -------GDVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
D++T A+ +F M S +P+ TY+A IS + G
Sbjct: 327 VGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHM-ESNRCQPDLWTYNAMISVYGRCG 385
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + GFS + TY SL++ K + + V EEM+ +G
Sbjct: 386 FALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYN 445
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ + D + + G + L+ + +++E + + +
Sbjct: 446 TIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDA 505
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF----- 368
P LH +S +I YA R + E + RM + G+ K+ V+ +F
Sbjct: 506 GVKP--TLHTYSALICAYAKVGRRVEAEETFNRMRESGI--KADHLAYSVMLDFFLRFNE 561
Query: 369 --RCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ AA L+ + I+ + Y+ ++ R + ++ V+ + K
Sbjct: 562 IKKAAA-----LYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTK 608
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 1/185 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK A+ ++ M++ G PD+ + LI + + A + M+
Sbjct: 444 YNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEML 503
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP TY A I ++ +G + + +G + Y ++ L+ +
Sbjct: 504 DAG-VKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEI 562
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ G P + E +L L D ++ ++ G +++ L
Sbjct: 563 KKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHDISSVL 622
Query: 291 VKCYC 295
VK C
Sbjct: 623 VKGGC 627
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 12/211 (5%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E D Y +IA K Q A +F + + G K D + ++ ++ SGD A
Sbjct: 1029 GLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKA 1088
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+L EIM + +PN+ T + + G + ++ G ++ Y S+I
Sbjct: 1089 ENLLEIMKEA-GIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVID 1147
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
LK D + EM I P I + +++ + L L G+ +
Sbjct: 1148 AYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGFDL 1207
Query: 283 --------NENMAQKLVKCYCELGRVDELEE 305
+E++ ++ +C LGR++ +E+
Sbjct: 1208 PIRLLGEKSESLVSEVDQC---LGRLEHVED 1235
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 6/213 (2%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++F SM GI DS FN LI A G + AL +F M + PN TY I+
Sbjct: 433 NLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEM-RGQGVSPNVVTYATVIAA 491
Query: 189 FSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII- 246
+G + DAM K + I+ G N Y SLI G D EMM GI
Sbjct: 492 LCRMGRLADAMEKL-SQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPR 550
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I ++ LC ++ + ++ G + + L+ YC +G++D+
Sbjct: 551 PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGV 610
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L+ + P+V+ +S +I Y S R+DD
Sbjct: 611 LDAMVSAGTEPDVVT--YSTLINGYFKSGRIDD 641
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 159/385 (41%), Gaps = 49/385 (12%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFA 127
++++++ +L ++ + KA+LVL D ++ +E + + Y+CL G+ + A
Sbjct: 309 TYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCL----GRWKE---A 361
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M +G+ PD FNSL+ + A +F ++++ +KP+ +Y +
Sbjct: 362 AKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFH-SIATKGHKPDIISYSILLH 420
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+++ G MN + + G + + LI+ K D + EM G+ P
Sbjct: 421 GYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSP 480
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ V+ LC +L L ++ G K N + L++ +C G + + +E +
Sbjct: 481 NVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELV 540
Query: 308 ETLTKCNQSPEVLLHFFSGIIR-----------------LYALSDRLDDVEYS------- 343
+ P + FFS II + + DR D ++
Sbjct: 541 SEMMD-QGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYC 599
Query: 344 -VGRMGKQ------GLSFKSAEDV---EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRA 392
VG+M K +S + DV +I YF+ D L LF + + K
Sbjct: 600 LVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTV 659
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEM 417
TY ++ G RAG + + +EM
Sbjct: 660 TYSLVLDGLFRAGRTSAAKKMFHEM 684
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 8/271 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN--VPFAMH 129
FS++ +I SL S ++Q L+ L +M KG+ D + + + G + A +
Sbjct: 237 FSYNTVIKSLCGGS--RSQEALDMLL-RMTKGDGCSPDVVSYTMVIHGLFMEGEISKACN 293
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M +G+ P+ +NS++ A LC + L + +P+ TY A I G+
Sbjct: 294 LFNEMVQKGVVPNVVTYNSIVHA-LCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGY 352
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S LG K + G ++ T+ SL+ K + + + + G P I
Sbjct: 353 SCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDI 412
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L G + + + + G + + L+ + + G +DE
Sbjct: 413 ISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTE 472
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ SP V+ + + + R+ L+D ++
Sbjct: 473 MRGQGVSPNVVTYATVIAALCRMGRLADAME 503
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 2/196 (1%)
Query: 127 AMHVFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + + M QGI +P+ F+S+I + G V+ A +F +++ + +P+ T+++
Sbjct: 536 AKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD-RPDIFTFNSL 594
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G+ +G +D A ++AG +V TY +LI+G K+ D + EM+ +
Sbjct: 595 IDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRV 654
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+ VL+GL + K ++ G ++ + +++ C DE
Sbjct: 655 KPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAIT 714
Query: 306 QLETLTKCNQSPEVLL 321
L N E+ +
Sbjct: 715 LFHKLGAMNLKFEIAI 730
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)
Query: 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
S +D Y CL+ GK+ A V +M + G +PD +++LI SG + L L
Sbjct: 593 SLIDGY-CLV---GKMDK---AFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLIL 645
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F M+ + KP + TY + G G A K + I +G ++++ TY ++ G
Sbjct: 646 FREMLC-KRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLC 704
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ D + ++ ++ + I IL ++ L ++ + + G N +
Sbjct: 705 RNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNAS 764
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
++ + G V+E + ++ K +P L + IIR+
Sbjct: 765 TYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRL--LNDIIRM 807
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F + G++ D V N+ + CLC ALS+ +S P++ +Y+ I
Sbjct: 188 FARLLRAGLRTDGIVTNTFL-KCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSL 246
Query: 190 SSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ +A++ G S +V +Y +IHG + + EM+ G++P+
Sbjct: 247 CGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPN 306
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ ++ LC R +D+ + L+ + + +E ++ Y LGR E + +
Sbjct: 307 VVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFK 366
Query: 309 TLTKCNQSPEVL 320
+T+ P+++
Sbjct: 367 EMTREGLIPDIV 378
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 23/277 (8%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML--KGNESCLDEYACLIALSGKVQ 122
F + + S++A++ S + K ++EW ++ML G S + Y +I ++
Sbjct: 225 FNYRPFKHSYNAILHSFLVLNQYK---LIEWVYEQMLLDGGFSSDILTYNIVIYAKYRLG 281
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV----------------VTALSLF 166
V + + M+ G PD +N L+ A + GD+ AL L
Sbjct: 282 KVDQVLTLLGEMDRNGFSPDFHTYNILLHA-ISKGDIGKGDLDKEDLGKEKEQFKALKLL 340
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M + +P + I GFS G +DA ++ G +V Y +I G +
Sbjct: 341 NYMRETG-IEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVV 399
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
AR+ + +EEM+S ++P++ ++ GLC K D S K + G N +
Sbjct: 400 ARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVV 459
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
LV C GRV + E ++ +T+ + +L F
Sbjct: 460 YITLVSCLRNAGRVADAREVIKQMTETGKYAHLLSRF 496
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 127/308 (41%), Gaps = 3/308 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V M+ +G+K + ++ +I + D A ++FE MV
Sbjct: 488 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 547
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E KP+ Y+ I+ F +GN+D + +T+ +I+G K+ D
Sbjct: 548 -KEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDM 606
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G +P++ ++ GL +R++++ L + G NE+ K+
Sbjct: 607 RRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 666
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ Y +G + E L N+ EV + + +++ S R+ M +
Sbjct: 667 MQGYASVGDTGKAFEYFTRLQ--NEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 724
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
+ S ++ R ++ DL K K TY ++ +AG +
Sbjct: 725 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 784
Query: 411 DSVINEMK 418
I EM+
Sbjct: 785 TQTIEEME 792
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 708 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 763
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 764 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 823
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++G+ P + +L L +R + V + K ++ G ++ A
Sbjct: 824 EEMKAVGLKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 883
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
+C C++ G EL E L+ + S H F
Sbjct: 884 RCLCKIEGSGGELTETLQKTFPPDWSSHHHHHGF 917
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
K N+ E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+
Sbjct: 304 KINKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEE 363
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
ALS M E + + TY + GFS GN +A + W+ ++N Y +I
Sbjct: 364 ALSCVRKM-KEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKII 422
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + + + + EM GI I I +++G
Sbjct: 423 YAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDG 459
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 144/328 (43%), Gaps = 25/328 (7%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + L Y+ +I K+++ A VF M +G+KPD ++N++I A G++
Sbjct: 514 EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDR 573
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ + M ++P ++T+ I+GF+ G++ + + G V T+ +LI
Sbjct: 574 AIQTVKEM-QKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALI 632
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G ++ R + +EM G+ + K+++G + + + L G +
Sbjct: 633 NGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLE 692
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
++ + L+K C+ GR+ + +TK + + + F I + + R D E
Sbjct: 693 VDIFTYEALLKACCKSGRM----QSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE 748
Query: 342 YS--VGRMGKQGL--------SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLR 390
+ + +M K+G+ SF SA CS + +R ++ ++ K
Sbjct: 749 AADLIQQMKKEGVKPDIHTYTSFISA-------CS--KAGDMNRATQTIEEMEALGVKPN 799
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G+ RA L K S EMK
Sbjct: 800 IKTYTTLIKGWARASLPEKALSCYEEMK 827
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G+KP++ V+ LI G+V A +F+ M + P+ Y++ I
Sbjct: 346 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLI 404
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G V+ K++A G N TY LIHG LK D +S ++ + M+ G+
Sbjct: 405 FGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 464
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ I +LE +++V S K +L G ++ + L+ G ++
Sbjct: 465 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 524
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
L + K P+V H +S +I
Sbjct: 525 LSEIEKNGSVPDV--HVYSSLI 544
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 86/228 (37%), Gaps = 35/228 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI N+ A V + +E G PD V++SLI + D A + + M
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM- 563
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN Y+A I G G++ + + +A G N TY SLI GS K D
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623
Query: 231 DSVDRFYEEMMSLGIIP----------------------------------SIPILEKVL 256
+ Y EM++ GI P SI ++
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 683
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+G C R K+ L ++G G N + ++ E G++ E+
Sbjct: 684 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 731
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A + M +KP+ V+ +LI + G+ A + + MV
Sbjct: 190 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 249
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TYD + G +G +D + + + TY +I G + +
Sbjct: 250 AAG-VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNK 308
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R EM + GI P++ ++ GLC + ++ L+ + G K N + L
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC G V E + +TK N P+ L+ ++ +I + R+++ +M ++
Sbjct: 369 ISGYCREGNVSLACEIFDKMTKVNVLPD--LYCYNSLIFGLSKVGRVEESTKYFAQMQER 426
Query: 351 GL 352
GL
Sbjct: 427 GL 428
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ +I L QS P+KA +LE K LK N YA LI+ + NV A +
Sbjct: 328 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV---YAPLISGYCREGNVSLACEI 384
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M + PD +NSLI G V + F M PN TY I G+
Sbjct: 385 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYL 443
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G++++ + + G N Y L+ K+ D + V ++ M+ G++
Sbjct: 444 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVM 499
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ +LI+ L +++ +KA +L+ K + N C Y LI K ++ +A +VF
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC---YNALIDGLCKSGDISYARNVFN 596
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
S+ A+G+ P+ + SLI GD+ A L+ M+++ P++ Y +G SS
Sbjct: 597 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSA 655
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G+++ G + ++ ++ +L+ G K + +M G++P+ +
Sbjct: 656 GDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 714
Query: 253 EKVLEGLCARRKLDRVKSFL 272
E ++ GL KL V +
Sbjct: 715 ENIISGLSEAGKLSEVHTIF 734
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K ++ A + M G+KP+ ++ L+ + S D+ S F+ M+
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 494
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +++ Y I SS GN++A + + G +V Y SLI G K D
Sbjct: 495 D-QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR 553
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EM G+ P+I +++GLC + ++ +L G N L
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613
Query: 291 VKCYCELGRV 300
+ C++G +
Sbjct: 614 IDGSCKVGDI 623
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 4/200 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG+VQ+ A V M +G+ P N+L+ L + + + E MV + P
Sbjct: 60 SGRVQD---AAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG-ISP 115
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY I + + D K G +N TY LI G ++ + F
Sbjct: 116 DVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFK 175
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++M G++P ++ GLC R+ + K+ L + K N + L+ +
Sbjct: 176 KDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMRE 235
Query: 298 GRVDELEEQLETLTKCNQSP 317
G DE + ++ + P
Sbjct: 236 GNADEAFKMIKEMVAAGVQP 255
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 3/213 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD+ +N +I + A L M + PN TY I G G + +
Sbjct: 289 RPDTITYNLIIEGHFRHHNKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKAS 347
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G N Y LI G + + +++M + ++P + ++ GL
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+++ + + G NE L+ Y + G ++ E+ ++ + P
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 467
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+++ ++ Y SD ++ V + M QG+
Sbjct: 468 VIYI--DLLESYFKSDDIEKVSSTFKSMLDQGV 498
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 2/213 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M G+ P+ V+++LI + G+ A + + M S+ +PN TYD I G
Sbjct: 335 LLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEM-SAAGVQPNKITYDNLIRGL 393
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
LG + ++ G+ + TY +I G L+ + + EM GI P++
Sbjct: 394 CKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNV 453
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC + +R L+ ++ G K N + L+ YC G E L+
Sbjct: 454 YTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKK 513
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+T+ N +P+ L + S II L + + +EY
Sbjct: 514 MTRENLTPD-LYCYNSLIIGLSNVGKMDEAIEY 545
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 16/263 (6%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L++M KG S + Y I ++G ++ A + M A G+KP++ V+ LI
Sbjct: 441 LNEMRKGGISP-NVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYC 499
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A + M + E P+ Y++ I G S++G +D ++Y + GF N
Sbjct: 500 REGSFSLACETLKKM-TRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPND 558
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY LIHG A + + ++ +M++ G+ P+ I ++LEG L++V S LK
Sbjct: 559 FTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKS 618
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+L G + + ++ G + L + K P+ L++ SG +
Sbjct: 619 MLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAA- 677
Query: 333 LSDRLDDVEYSVG---RMGKQGL 352
D+E +VG M K+G+
Sbjct: 678 ------DMEKAVGLLDEMAKKGI 694
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 5/203 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG +Q A+ V + +E G+ PDS ++ SLI + D+ A+ L + M + + +P
Sbjct: 641 SGHMQA---AVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEM-AKKGIEP 696
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
Y+A I GF ++ + + I G N TY +LI G KA D Y
Sbjct: 697 GISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLY 756
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM++ G+ P + + G L + + ++ G+ I + LV +C+
Sbjct: 757 NEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSF-NTLVHGFCKR 815
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
G++ E + L + + P +L
Sbjct: 816 GKLQETVKFLHVMMDKDIVPSLL 838
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 3/177 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M K G E + Y LI K ++ A ++F S+ +G+ P+ + +LI
Sbjct: 686 LDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCK 745
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+GD+ A+ L+ M++ E P++ Y +G S+ G++ IA G+++ +
Sbjct: 746 AGDIRDAIDLYNEMLT-EGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-IS 803
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
++ +L+HG K +F MM I+PS+ +E ++ GL KL +
Sbjct: 804 SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIF 860
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 4/242 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY I + + ++++ K G S+NV TY +LI G +A + +
Sbjct: 241 PDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGY 300
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM G++P ++ GLC R + D+ K L + G N + L+ +
Sbjct: 301 KKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMR 360
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G DE + ++ ++ P + + +IR R+ + +M K G
Sbjct: 361 QGNADEAFKIVKEMSAAGVQPNKIT--YDNLIRGLCKLGRMGRASRILKQMTKIGY-MAD 417
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
+VI + R + L L+ + KG TY ++ G + G S + ++
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477
Query: 416 EM 417
+M
Sbjct: 478 QM 479
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 4/242 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+ +++LI L S+ K +E+ + + KG + Y LI N+ A +
Sbjct: 524 YCYNSLIIGL--SNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLL 581
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M G+ P+ ++ ++ S ++ S + M+ + P+++ Y I SS
Sbjct: 582 HQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE-KGLMPDNRLYGIVIHNLSS 640
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G++ A + G + Y SLI G KA D + +EM GI P I
Sbjct: 641 SGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISC 700
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-DELEEQLETL 310
+++G C + ++ ++ G N L+ YC+ G + D ++ E L
Sbjct: 701 YNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEML 760
Query: 311 TK 312
T+
Sbjct: 761 TE 762
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G+KP++ V+ LI G+V A +F+ M + P+ Y++ I
Sbjct: 473 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLI 531
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G V+ K++A G N TY LIHG LK D +S ++ + M+ G+
Sbjct: 532 FGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 591
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ I +LE +++V S K +L G ++ + L+ G ++
Sbjct: 592 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 651
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
L + K P+V H +S +I
Sbjct: 652 LSGIEKNGSVPDV--HVYSSLI 671
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 86/228 (37%), Gaps = 35/228 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI N+ A V + +E G PD V++SLI + D A + + M
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM- 690
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN Y+A I G G++ + + +A G N TY SLI GS K D
Sbjct: 691 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 750
Query: 231 DSVDRFYEEMMSLGIIP----------------------------------SIPILEKVL 256
+ Y EM++ GI P SI ++
Sbjct: 751 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 810
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+G C R K+ L ++G G N + ++ E G++ E+
Sbjct: 811 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 858
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A + M +KP+ V+ +LI + G+ A + + MV
Sbjct: 317 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 376
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TYD + G +G +D + + + TY +I G +
Sbjct: 377 AAG-VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 435
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R EM + GI P++ ++ GLC + ++ L+ + G K N + L
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC G V E + +TK N P+ L+ ++ +I + R+++ +M ++
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPD--LYCYNSLIFGLSKVGRVEESTKYFAQMQER 553
Query: 351 GL 352
GL
Sbjct: 554 GL 555
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ +I L QS P+KA +LE K LK N YA LI+ + NV A +
Sbjct: 455 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV---YAPLISGYCREGNVSLACEI 511
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M + PD +NSLI G V + F M PN TY I G+
Sbjct: 512 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYL 570
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++++ + + G N Y L+ K+ D + V ++ M+ G++
Sbjct: 571 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 630
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
I ++ L + ++ L + G + ++ L+ C+ ++ L+ +
Sbjct: 631 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 690
Query: 311 TKCNQSPEVL 320
+K P ++
Sbjct: 691 SKKGVDPNIV 700
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ +LI+ L +++ +KA +L+ K + N C Y LI K ++ +A +VF
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC---YNALIDGLCKSGDISYARNVFN 723
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
S+ A+G+ P+ + SLI GD+ A L+ M+++ P++ Y +G SS
Sbjct: 724 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSA 782
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G+++ G + ++ ++ +L+ G K + +M G++P+ +
Sbjct: 783 GDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 841
Query: 253 EKVLEGLCARRKLDRVKSFL 272
E ++ GL KL V +
Sbjct: 842 ENIISGLSEAGKLSEVHTIF 861
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K ++ A + M G+KP+ ++ L+ + S D+ S F+ M+
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 621
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +++ Y I SS GN++A + + G +V Y SLI G K D
Sbjct: 622 D-QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 680
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EM G+ P+I +++GLC + ++ +L G N L
Sbjct: 681 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740
Query: 291 VKCYCELGRV 300
+ C++G +
Sbjct: 741 IDGSCKVGDI 750
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 8/301 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG+VQ+ A V M +G+ P N+L+ L + + + E MV + P
Sbjct: 187 SGRVQD---AAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG-ISP 242
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY I + + D K G +N TY LI G ++ + F
Sbjct: 243 DVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFK 302
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++M G++P ++ GLC R+ + K+ L + K N + L+ +
Sbjct: 303 KDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMRE 362
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G DE + ++ + P + + ++R ++D + +M + +
Sbjct: 363 GNADEAFKMIKEMVAAGVQPNKIT--YDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI 420
Query: 358 EDVEMVICSYFR-CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
++I +FR + D L + TY ++ G ++G K ++ E
Sbjct: 421 T-YNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE 479
Query: 417 M 417
M
Sbjct: 480 M 480
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 40/316 (12%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F++ ALI L +S +A+ +L+ LK N + YA LI + N A +
Sbjct: 315 FTYGALINGLCKSRRSNEAKALLDEMSCAELKPN---VVVYANLIDGFMREGNADEAFKM 371
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE---------------- 174
M A G++P+ +++L+ G + A L + MV
Sbjct: 372 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 431
Query: 175 ------------------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
PN TY I G G + + G N
Sbjct: 432 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 491
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LI G + + +++M + ++P + ++ GL +++ + +
Sbjct: 492 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQ 551
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G NE L+ Y + G ++ E+ ++ + P +++ ++ Y SD
Sbjct: 552 ERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYI--DLLESYFKSDD 609
Query: 337 LDDVEYSVGRMGKQGL 352
++ V + M QG+
Sbjct: 610 IEKVSSTFKSMLDQGV 625
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ +IA GK++ A VF ++ G +++ +++L+ A +G+ A + MV
Sbjct: 638 HVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMV 697
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN+ + + F G ++++Y G + N +T+ + H + +
Sbjct: 698 AAG-LQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNL 756
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD-RVKSFLKFLLGGGWKINENMAQK 289
+ Y +M G PSI + K L L +R ++ + +K + G +++ ++
Sbjct: 757 EEARSMYRQMREAGFSPSIQVF-KALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNH 815
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ Y +LG + + + + SP+ F+ +I LY+ + + + + + M K
Sbjct: 816 MISLYSKLGSYRKAALVFKGMQEIGCSPDATT--FNTLIMLYSRNQMVQEAQALLREMIK 873
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSG 408
G + + +I +Y R AY+ +L I + K Y+ ++ YR+AG
Sbjct: 874 TG-NAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHR 932
Query: 409 KLDSVINEMK 418
K++ VI +MK
Sbjct: 933 KIEEVIEQMK 942
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A G++PD+ +N+LI AC + + A+ +FE M + P+ TY+A IS + G V
Sbjct: 178 AAGLRPDTITYNTLISACSLNNRLSDAILIFEEM-QRQGCDPDIWTYNAMISVYGRAGRV 236
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+A + + GF+ + TY S++H + + V+R MM S I
Sbjct: 237 EAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI-RGMMRDARCSSDEITYNT 295
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCELGRVDELEEQLETLTKCN 314
+ + + + R L + + +++ L+ + G V+E E + K
Sbjct: 296 MIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQ 355
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P L FS +I YA +D D E++ M + G+
Sbjct: 356 VRP--TLQAFSAMICAYAKADMFSDAEHTYSCMLRAGV 391
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 37/225 (16%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E +D Y +I+L K+ + A VF M+ G PD+ FN+LI + V A
Sbjct: 805 GLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEA 864
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+L M+ + PN TY IS + L + + + G + Y +I+
Sbjct: 865 QALLREMIKTGN-APNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMIN 923
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
KA + ++ E+M + G PS+ + +++
Sbjct: 924 VYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDS------------------------ 959
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
Y + G + EE LETL + SP+ +H+ S I
Sbjct: 960 -----------YGKGGATGKAEEVLETLPEIGMSPDA-IHYTSII 992
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 34/228 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA------------------ 152
Y +I++ G+ V A +F M+ QG PD+ +NS++ A
Sbjct: 223 YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 282
Query: 153 -CLCSGDVVTALSLFE---------------IMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
CS D +T ++ + + E P+S T+ I G V+
Sbjct: 283 DARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVN 342
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + +Q + ++I KA F + Y M+ G+ P + +L
Sbjct: 343 EAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVML 402
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ ++ K ++G G K ++ +V+ + + + E+E
Sbjct: 403 DVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIE 450
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 9/373 (2%)
Query: 48 LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC 107
L+ + Q D + F+ Q S+ LI L +A L L R+D L +
Sbjct: 152 LKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVV 211
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y+ +I K +NV A +++ M ++ I + +++LI G + A+ LF
Sbjct: 212 M--YSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFN 269
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M +SE P+ T++ + F G V A + G ++ TY SL+ G
Sbjct: 270 KM-TSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLV 328
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + M G+ ++ V+ G C + +D+ K + N
Sbjct: 329 NEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITY 388
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L+ C+ GR+ E ++ + Q P+++ +S I+ + +D + ++
Sbjct: 389 NSLIDGLCKSGRISYALELIDLMHDRGQQPDIIT--YSSILDALCKNHLVDKAIALLIKL 446
Query: 348 GKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
QG+ ++ +C R D ++F D + Y L TY ++ G+ G
Sbjct: 447 KDQGIRPNMYTYTILIDGLCKGGRLE--DARNIFEDLLVKGYNLTVNTYTVMIQGFCSHG 504
Query: 406 LSGKLDSVINEMK 418
L + S++++MK
Sbjct: 505 LFDEALSLLSKMK 517
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 141/344 (40%), Gaps = 43/344 (12%)
Query: 100 MLKGNESCLD-EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-G 157
+L+ N + D E+ ++ K ++ + +F ME +GIKP+ FN LI C C G
Sbjct: 61 LLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILI-NCFCQLG 119
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+ A S+ ++ Y+P++ T + FI GF G + ++ +A GF ++ +Y
Sbjct: 120 LIPFAFSVLAKILKMG-YEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSY 178
Query: 218 ESLIHGSLKA---------------------------------RDFDSVDRF--YEEMMS 242
+LI+G K +D + D F Y EM+S
Sbjct: 179 GTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVS 238
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I +I ++ G C KL + + LV +C+ GRV E
Sbjct: 239 RRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKE 298
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ L + K P+++ ++ ++ Y L + ++ + + M +G++ + +
Sbjct: 299 AKNGLAMMMKQGIKPDIVT--YNSLMDGYCLVNEVNMAKSILNTMSHRGVT-ATVRSYNI 355
Query: 363 VICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
VI + + D+ + LF + TY+ L+ G ++G
Sbjct: 356 VINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSG 399
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + +A+ + M +G +PD ++S++ A LC +V I +
Sbjct: 388 YNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDA-LCKNHLVDKAIALLIKL 446
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY I G G ++ + + G+++ V TY +I G F
Sbjct: 447 KDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLF 506
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
D +M IP E ++ L + + D+ + L+ ++ G
Sbjct: 507 DEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 14/251 (5%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ 137
T LQ + K A + + LD M++ G ++ L+ K + V AM VF+ M Q
Sbjct: 233 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ 292
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ P++ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 293 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC----- 346
Query: 198 MNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
NKW A + G +N + S+I K ++ ++ M+ +G+ P I
Sbjct: 347 -NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 405
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C K+D L ++ G K + L+ YC++ R+ + +
Sbjct: 406 YSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREME 465
Query: 312 KCNQSPEVLLH 322
SP+++ +
Sbjct: 466 SSGVSPDIITY 476
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 125/282 (44%), Gaps = 7/282 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
++++++ SS K +V L KM G E + Y L+ K A +
Sbjct: 159 MTYNSIVHGFCSSGQPKEAIVF---LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 215
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F SM +G+KP+ + +L+ G +V L ++MV + + PN + + ++
Sbjct: 216 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILVCAYA 274
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
V+ ++ G + N TY ++I K+ + ++E+M+ G+ P
Sbjct: 275 KQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI 334
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ ++ GLC K +R + + +L G +N ++ +C+ GRV E E+ + +
Sbjct: 335 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 394
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P+++ +S +I Y L+ ++D+ + M G+
Sbjct: 395 VRIGVKPDIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 434
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 5/244 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAF 185
A HVF + +GI PD +N L+ AL L IM + P+ +Y
Sbjct: 36 ARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+GF G++D Y + S NV TY S+I KA+ D M+ G+
Sbjct: 95 INGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGV 154
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P ++ G C+ + FLK + G + + L+ C+ GR E +
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARK 214
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
+++TK PE+ + +++ YA L ++ + M + G+ + +++C
Sbjct: 215 IFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILVC 271
Query: 366 SYFR 369
+Y +
Sbjct: 272 AYAK 275
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 36/189 (19%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 301 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 360
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LF++MV KP+ TY I G+ G +
Sbjct: 361 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKM 419
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K A+ ++ G + TY +LI+G K + EM S G+ P I +
Sbjct: 420 DEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNII 479
Query: 256 LEGLCARRK 264
L+GL R+
Sbjct: 480 LQGLFQTRR 488
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 128/332 (38%), Gaps = 26/332 (7%)
Query: 94 EWRLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
E LDK LD+ Y +IA K Q V AM V T+M G+ PD
Sbjct: 101 EGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMT 160
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+NS++ SG A+ + M S+ +P+ TY++ + G K + +
Sbjct: 161 YNSIVHGFCSSGQPKEAIVFLKKM-RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 219
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
G + TY +L+ G + + M+ GI P+ + ++ + K+
Sbjct: 220 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKV 279
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+ + G N ++ C+ GRV++ E + SP ++ ++
Sbjct: 280 EEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIV--YN 337
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLS-----FKSAEDVEMVICSYFRCAAYDRL-DLF 379
+I ++ + E + M +G+ F S D C R ++L DL
Sbjct: 338 SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH---CKEGRVIESEKLFDLM 394
Query: 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD 411
++ K TY L+ GY L+GK+D
Sbjct: 395 ---VRIGVKPDIITYSTLIDGY---CLAGKMD 420
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ D +FN++I +
Sbjct: 175 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 234
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 235 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 293
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ Y++M+ I P I ++ G C +LD+ K +F+
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 353
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + L+K +C+ RV++ E
Sbjct: 354 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 383
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD +NSL+ + A +FE MVS + + P+ TY+ I
Sbjct: 311 AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLI 369
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 370 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 429
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+ +
Sbjct: 430 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 489
Query: 307 LETLTKCNQSPEVLLH 322
+L+ P V+ +
Sbjct: 490 FCSLSLKGVKPNVVTY 505
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE--- 110
IK ++D DIF +NS L+ KA+ + E+ + K C +
Sbjct: 319 IKRSIDP-DIFTYNS-------LVNGFCMHDRLDKAKQMFEFMVSK------DCFPDVVT 364
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 365 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 424
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 425 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 483
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G N L
Sbjct: 484 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 543
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 544 IRAHLRDGDKAASAELIREMRSC 566
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 3/211 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + + A+ + M G +P +SL+ C G ++ A++L + M
Sbjct: 85 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQM 143
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V Y+P++ T+ I G + G N+ TY +++G K D
Sbjct: 144 VEMG-YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 202
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M + I + I +++ LC R +D + K + G + N
Sbjct: 203 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ C C GR + + L + + +P ++
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLV 293
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 9/254 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y +I+ + + A+ ++ M +G+ P++ +N+LI G
Sbjct: 331 KGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGI 390
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL +F+ M N++TY+ I G + +++ + + G S V TY +LI
Sbjct: 391 ALKIFDWM-EGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLI 449
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+LK ++ RF M P +++ G C KLD SF +L G
Sbjct: 450 VENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGIS 509
Query: 282 INENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
N+ ++ YC+ G++D L E++E C+ S E ++ II + +R
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEE-NGCSASIET----YNAIISGLSKGNRFS 564
Query: 339 DVEYSVGRMGKQGL 352
+ E +M +QGL
Sbjct: 565 EAEKFCAKMTEQGL 578
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 3/215 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM VF M G P +N+LI L G + A + F M+ +P+ +TY I
Sbjct: 426 AMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNA-TRFLYMMKESNCEPDERTYCELI 484
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF G +D+ ++ + G S N TY ++I G K D +E M G
Sbjct: 485 SGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCS 544
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
SI ++ GL + + F + G + N L+ C+ + +
Sbjct: 545 ASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKI 604
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ K N P H ++ +I ++D E
Sbjct: 605 FHEMEKKNCLPNA--HTYTSLIYGLCQEGKVDAAE 637
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 9/248 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ +Q+++ A+I L L R+++ G + ++ Y +I+ K
Sbjct: 507 GISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE--NGCSASIETYNAIISGLSKGNRFS 564
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDA 184
A M QG++P++ + SLI LC A +F M + PN+ TY +
Sbjct: 565 EAEKFCAKMTEQGLQPNTITYTSLING-LCKNTATNLAFKIFHEM-EKKNCLPNAHTYTS 622
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G G VDA + G + TY +L+ G + + + E M G
Sbjct: 623 LIYGLCQEGKVDAAERL----TENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKG 678
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ PS+ I +L C K+D + G++ + + + L+ C + R +E
Sbjct: 679 LSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEAL 738
Query: 305 EQLETLTK 312
++L K
Sbjct: 739 NIFQSLLK 746
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 8/207 (3%)
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
V + YA ++G ++ T+ ++I+ K + ++ + P
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
++ G C RKLD+ ++ G N L+ C GR+ E + LE +T+
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297
Query: 315 QSPEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P V ++ + + +L D R+DD V MGK+G S S + +I FR
Sbjct: 298 IEPTV----YTYTVPISSLCDIGRVDDAINLVRSMGKKGCS-PSVQTYTAIISGLFRAGK 352
Query: 373 YD-RLDLFLDHIKGSYKLRRATYDFLV 398
+ + ++ +K TY+ L+
Sbjct: 353 MELAIGMYHKMLKEGLVPNTVTYNALI 379
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKVQ A+ VF + + PD+ + SLI + + A +F+ MV + PN
Sbjct: 211 GKVQE---AVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVK-DGCNPN 266
Query: 179 SKTYDAFISGFSSLGNV-DAMNKW--------------YAANIAA--------------- 208
S TY I+G + G + +AM+ Y I++
Sbjct: 267 SVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVR 326
Query: 209 -----GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G S +VQTY ++I G +A + Y +M+ G++P+ ++ LC
Sbjct: 327 SMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEG 386
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ ++ G G N +++K + +++ + K SP V+ +
Sbjct: 387 RFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTY 445
>gi|169865619|ref|XP_001839408.1| pentatricopeptide repeat protein [Coprinopsis cinerea okayama7#130]
gi|116499527|gb|EAU82422.1| pentatricopeptide repeat protein [Coprinopsis cinerea okayama7#130]
Length = 1694
Score = 75.5 bits (184), Expect = 5e-11, Method: Composition-based stats.
Identities = 60/284 (21%), Positives = 120/284 (42%), Gaps = 46/284 (16%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ ALI ++ ++ ++ W + M G L + +I+ + + +A+ +F
Sbjct: 1326 AYGALILHIKDTTDDATNSLMLWN-EAMRVGVTPNLYLFNNIISKLSRARKADYALELFH 1384
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+M QGI P S + ++I AC GDVV+A +LF MV +KP Y+ + +++
Sbjct: 1385 TMREQGIVPSSITYGAVIGACARVGDVVSAETLFREMVEQTNFKPRVPPYNTMMQVYTTT 1444
Query: 193 GNVDAMNKWYAANI-AAGFSVNVQTYESL--IHGSLKARDFDSVDRFYEEM--------- 240
WY + AG TY+ L ++GS++ D S++R +EE+
Sbjct: 1445 KPDRERALWYYEEMKKAGVHPTAHTYKLLLDLYGSVEPLDIASMERVFEELKRNPRIQLQ 1504
Query: 241 -------------------MSLGIIPSIP--------------ILEKVLEGLCARRKLDR 267
++ SIP + E ++ L A ++ D
Sbjct: 1505 GTHFASLVNAYGCVLKDLDKAIATFDSIPSHLVNGKPLIADAVVYEAMVNALVANKRTDL 1564
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+ +F++ + + +A L+K Y +G +D+ E+++
Sbjct: 1565 IPAFMERMSQDQVHMTAYVANFLIKGYANVGDIDQARSIFESMS 1608
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 5/283 (1%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G +PD +N+LI G V A L E + PN +Y I + G
Sbjct: 339 NGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIK-RGLSPNKLSYTPLIHVYCKQGKCL 397
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ G +++ Y +L+HG + A + D ++M+ G++P + ++
Sbjct: 398 RAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLM 457
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC + +L K L +L ++ ++ LV + G++DE ++ E
Sbjct: 458 NGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMD 517
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDR 375
P V+ ++ +I+ Y ++D V RM K G +I Y + ++
Sbjct: 518 PGVV--GYNAMIKGYCKFGMMNDALTCVQRM-KDGDHSPDEFTYSTIIDGYVKQNDLHNA 574
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
L LF +K K TY L+ G+ R G S + + EM+
Sbjct: 575 LKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMR 617
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 9/240 (3%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG-- 119
DI + + +AL+ +L Q + A+ V E +M+K + C D Y+ I + G
Sbjct: 162 DIHNYLPDVIACNALLNALIQQKKVEIARKVYE----EMVK-RDGCWDNYSVCIMVRGLC 216
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V + +G P+ +N+L+ GDV A LF+ + + + P +
Sbjct: 217 KERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKEL-KMKGFLPTT 275
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+TY I+G N A++ G VNVQ Y S++ +K V +
Sbjct: 276 ETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRW 335
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+ G P I ++ G C K+ + L+ + G N+ L+ YC+ G+
Sbjct: 336 ITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGK 395
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACL 154
L +ML N S LD + + G +++ A +F A+G+ P +N++I
Sbjct: 473 LVEMLHQNLS-LDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYC 531
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + AL+ + M ++ P+ TY I G+ ++ K + + NV
Sbjct: 532 KFGMMNDALTCVQRM-KDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNV 590
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G + D ++ +EEM S G+ P++ ++ C K+ + SF +
Sbjct: 591 VTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFEL 650
Query: 275 LL 276
+L
Sbjct: 651 ML 652
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN Y+ + G+ G+V+ N + GF +TY +I+G K +F +VD
Sbjct: 238 PNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGL 297
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM G+ ++ + +++ V L+++ G + + L+ C
Sbjct: 298 LVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCR 357
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
G+V E EE LE K SP L ++ +I +Y
Sbjct: 358 DGKVHEAEELLEHAIKRGLSPNKL--SYTPLIHVY 390
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 36/236 (15%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG+ L Y L+ V A+ V M +G+ PD+ V+N L+ LC ++
Sbjct: 409 KGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNG-LCKKGRLS 467
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ------ 215
A L + + + ++ + GF G +D K + IA G V
Sbjct: 468 AAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMI 527
Query: 216 -----------------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
TY ++I G +K D + + + +M+
Sbjct: 528 KGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCK 587
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P++ ++ G C R + + + G K N L+ C+C+ G++ +
Sbjct: 588 PNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISK 643
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 3/158 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M QGI P+ FN+++C G V+ A L ++M +P+ +Y+A I
Sbjct: 468 AGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM-ERVGTRPDIISYNALI 526
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G D +K ++ G N TY +L+HG + D ++EM+S GI
Sbjct: 527 RGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGIT 586
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKI 282
P + +L GL R+ K ++ G W I
Sbjct: 587 PVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSI 624
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Query: 128 MHVFTS-MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH F M GI P+ +FN + CA + A+ +F M + PN Y I
Sbjct: 363 MHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKM-RQQGLSPNVVNYATLI 421
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + I G + N+ + SL++G ++ + EM++ GI
Sbjct: 422 DALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIH 481
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ LC ++ + + + + G + + L++ +C +G+ DE +
Sbjct: 482 PNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKL 541
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
L+ + P ++ ++ Y R+DD YSV
Sbjct: 542 LDIMLSVGLKPNECT--YNTLLHGYCRDGRIDDA-YSV 576
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 11/231 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAF 185
A ++F M QGI P+ + +++ LC VV A +F+ M+ + +PN TY
Sbjct: 223 AYNLFLDMTDQGIPPNVVTY-TIVIDGLCKAQVVDRAEGVFQQMID-KGVRPNIVTYTCL 280
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G+ S+G + + A G + TY L+ K + ++ M+ GI
Sbjct: 281 IHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGI 340
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + I +L G + L + SFL ++G G N + + +C + + E
Sbjct: 341 KPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIV---FCAFAKKAMIGE 397
Query: 306 QLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
++ K Q SP V+ ++ +I R+DD E +M +G++
Sbjct: 398 AMDIFNKMRQQGLSPNVV--NYATLIDALCKLGRVDDAELKFNQMINEGVA 446
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 3/226 (1%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+H+ + + P+ +N++I G V A +LF M + + PN TY I
Sbjct: 189 LHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDM-TDQGIPPNVVTYTIVID 247
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G VD + I G N+ TY LIHG L + V R +EM + G+ P
Sbjct: 248 GLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEP 307
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L+ LC + K + ++ G K + ++ ++ Y G + E+ L
Sbjct: 308 DCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFL 367
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP + F+ + +A + + +M +QGLS
Sbjct: 368 DLMVGNGISPN--HYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLS 411
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 5/233 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K +L E +++ + N + C + G+V A + ME G +PD +
Sbjct: 467 KAGELFFEM-VNQGIHPNVVFFNTIMCNLCTEGRVMK---AQRLIDLMERVGTRPDIISY 522
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+LI G A L +IM+S KPN TY+ + G+ G +D + +
Sbjct: 523 NALIRGHCLVGKTDEASKLLDIMLSVG-LKPNECTYNTLLHGYCRDGRIDDAYSVFQEML 581
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ G + V TY +++HG K R F Y M++ G SI +L GL +D
Sbjct: 582 SNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVD 641
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ L +++ ++ + GR ++ T++ P+V
Sbjct: 642 EALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDV 694
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 128/334 (38%), Gaps = 14/334 (4%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+ V + +DK ++ N + Y CLI + + + M A G++PD +
Sbjct: 257 RAEGVFQQMIDKGVRPN---IVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYG 313
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
L+ G A LF+ M+ + KP+ Y + G+++ G + M+ + +
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIR-KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVG 372
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G S N + + K + +M G+ P++ +++ LC ++D
Sbjct: 373 NGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDD 432
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
+ ++ G N + LV C + + ++ E + P V+ FF+ I
Sbjct: 433 AELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVV--FFNTI 490
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFLD-HI 383
+ R+ + + M + G + D+ +I + D LD +
Sbjct: 491 MCNLCTEGRVMKAQRLIDLMERVG----TRPDIISYNALIRGHCLVGKTDEASKLLDIML 546
Query: 384 KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
K TY+ L+ GY R G SV EM
Sbjct: 547 SVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEM 580
>gi|30699392|ref|NP_178029.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806390|sp|A3KPF8.1|PP131_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79080, chloroplastic; Flags: Precursor
gi|126352286|gb|ABO09888.1| At1g79080 [Arabidopsis thaliana]
gi|332198080|gb|AEE36201.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 576
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ V M + GI PD++ + L+ G+V A+ L E M Y N+
Sbjct: 118 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKM-EDHGYPSNT 176
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G LG+++ ++ + G + N TY L+ + K R D + +E
Sbjct: 177 VTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDE 236
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ G P++ +L G C + D + + L G+K N L++C C GR
Sbjct: 237 IIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGR 296
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+E L + +++P V+ ++ +I A R + + M K F+
Sbjct: 297 WEEANSLLAEMDGGDRAPSVVT--YNILINSLAFHGRTEQALQVLKEMSKGNHQFR 350
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + ++ +++A I SL + K +
Sbjct: 352 TATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGSLCEHNSKVQE---A 407
Query: 95 WRLDKMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + + L + C D Y +I + N A + M G PD+ +++LI
Sbjct: 408 FYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRG 467
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G A+ + IM SE KP ++A I G + D + + +
Sbjct: 468 LCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMP 527
Query: 213 NVQTYESLIHG 223
N TY L+ G
Sbjct: 528 NETTYAILVEG 538
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G NV L++ KA R E M+S GIIP ++ LC R +
Sbjct: 98 VTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNV 157
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
++ + G+ N LV+ C LG +++ + +E L + +P + F
Sbjct: 158 GYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSF 216
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ D +FN++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 273 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ Y++M+ I P I ++ G C +LD+ K +F+
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + L+K +C+ RV++ E
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD +NSL+ + A +FE MVS + + P+ TY+ I
Sbjct: 349 AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+ +
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527
Query: 307 LETLTKCNQSPEVLLH 322
+L+ P V+ +
Sbjct: 528 FCSLSLKGVKPNVVTY 543
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE--- 110
IK ++D DIF +NS L+ KA+ + E+ + K C +
Sbjct: 357 IKRSIDP-DIFTYNS-------LVNGFCMHDRLDKAKQMFEFMVSK------DCFPDVVT 402
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 463 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G N L
Sbjct: 522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 581
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 582 IRAHLRDGDKAASAELIREMRSC 604
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 3/211 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + + A+ + M G +P +SL+ C G ++ A++L + M
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQM 181
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V Y+P++ T+ I G + G N+ TY +++G K D
Sbjct: 182 VEMG-YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M + I + I +++ LC R +D + K + G + N
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ C C GR + + L + + +P ++
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 6/277 (2%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
S++K LD + S++ LI + S + L L+ + G + Y
Sbjct: 266 SKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYN 325
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
LI+ + N+ A+ VF+ ME+ +PD +N++I A LF+ + S
Sbjct: 326 TLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKEL-ES 384
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + P++ TY++ + FS GN + + + GF + TY ++IH K D
Sbjct: 385 KGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQ 444
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+ Y +M S G P +++ L K++ + + +L G K + L+
Sbjct: 445 AMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALIC 504
Query: 293 CYCELGRVDELEEQLETLTKCNQSPE-----VLLHFF 324
Y + G+ +E EE + + P+ V+L FF
Sbjct: 505 AYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFF 541
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK V A +V + M G+KP +++LICA +G A F M
Sbjct: 464 YTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMR 523
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S KP+ Y + F + Y I GF+ + YE ++H ++ +
Sbjct: 524 RSG-IKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMW 582
Query: 231 DSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D VDR +M L G+ P + I +++G C D LK + G++++ +
Sbjct: 583 DVVDRIIRDMEELSGMNPQV-ISSVLVKGGC----YDHAAKMLKVAISNGYELDHEI 634
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 133/312 (42%), Gaps = 11/312 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ GK++ A + S+ + K D V+N+LI A SG A ++F M+
Sbjct: 777 YIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMM 836
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA---AGFSVNVQTYESLIHGSLKA 227
S T D+ +L +N+ Y G ++ + + +A
Sbjct: 837 RDGP----SPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQA 892
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ V + Y M + G P++ + +L LC +++ V++ L + G++ + +
Sbjct: 893 GNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQIC 952
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++K Y + + + + + P+ ++ +I +Y R ++ + +M
Sbjct: 953 NSILKLYLGIEDFKSMGIIYQKIQDASLKPDE--ETYNTLIIMYCRDRRPEEGFSLMNKM 1010
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGL 406
GL K + +I ++ + Y++ + + ++ + YKL RA Y ++ YR +G
Sbjct: 1011 RSLGLEPK-LDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGD 1069
Query: 407 SGKLDSVINEMK 418
K ++++ MK
Sbjct: 1070 HRKAENLLAIMK 1081
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E LD Y LI K + A +F + + G K D A ++ ++ SGD A
Sbjct: 1014 GLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKA 1073
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+L IM S +P T + + G + G ++ Y S+I
Sbjct: 1074 ENLLAIMKESG-IEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVID 1132
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIP 247
LK DF + EM GI P
Sbjct: 1133 AYLKKGDFKAGIEKLTEMKEAGIEP 1157
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 7/193 (3%)
Query: 130 VFTSMEAQGIKPDSAVFN---SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ M+A G P V+ L+C C DV T L E ++P+ + ++ +
Sbjct: 901 IYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEME----EAGFQPDLQICNSIL 956
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + + +M Y A + +TY +LI + R + +M SLG+
Sbjct: 957 KLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLE 1016
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ +R ++ + + L G+K++ ++K Y G + E
Sbjct: 1017 PKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENL 1076
Query: 307 LETLTKCNQSPEV 319
L + + P +
Sbjct: 1077 LAIMKESGIEPTI 1089
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 131/315 (41%), Gaps = 33/315 (10%)
Query: 121 VQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
+QN F A +F+ M G++ ++ ++ + C D+ + ++ +E+ N
Sbjct: 713 IQNELFDVASQIFSDMRFNGVESSECLYQGMV-SVYCRMDLPE--TAHHLLYHAEK---N 766
Query: 179 SKTYDAFISGFSSLGNVDAMNK---WYAANIAAGF------SVNVQTYESLIHGSLKARD 229
D IS + + V+ K W A G ++ + + +LIH +
Sbjct: 767 GIILDNDISVYIDI--VETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGC 824
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++ + MM G P++ + +L+ L R+L+ + ++ L G KI+++
Sbjct: 825 YERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILL 884
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ + + G + E+++ + P +H + ++RL R+ DVE + M +
Sbjct: 885 TLEAFAQAGNLFEVQKIYNGMKAAGYFP--TMHVYRIMLRLLCKCKRVRDVETMLCEMEE 942
Query: 350 QGLSFKSAEDVEMVICS-----YFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRR 403
G ++ IC+ Y + + + I+ S K TY+ L+ Y R
Sbjct: 943 AGFQ------PDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCR 996
Query: 404 AGLSGKLDSVINEMK 418
+ S++N+M+
Sbjct: 997 DRRPEEGFSLMNKMR 1011
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK + AM +F+ M G +PD++V+N+LI A L S D +V LS F
Sbjct: 130 YSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYF 189
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M E KPN TY+ F+ VD +N + + S ++ TY ++ K
Sbjct: 190 EKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGK 249
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++ M S I P I +++ ++ D+++ K LL
Sbjct: 250 NGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLL 299
>gi|3152594|gb|AAC17075.1| Contains repeats similar to RECA protein gb|L26100 from
Acinetobacter calcoaceticus [Arabidopsis thaliana]
Length = 566
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ V M + GI PD++ + L+ G+V A+ L E M Y N+
Sbjct: 108 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKM-EDHGYPSNT 166
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G LG+++ ++ + G + N TY L+ + K R D + +E
Sbjct: 167 VTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDE 226
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ G P++ +L G C + D + + L G+K N L++C C GR
Sbjct: 227 IIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGR 286
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+E L + +++P V+ ++ +I A R + + M K F+
Sbjct: 287 WEEANSLLAEMDGGDRAPSVVT--YNILINSLAFHGRTEQALQVLKEMSKGNHQFR 340
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + ++ +++A I SL + K +
Sbjct: 342 TATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGSLCEHNSKVQE---A 397
Query: 95 WRLDKMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + + L + C D Y +I + N A + M G PD+ +++LI
Sbjct: 398 FYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRG 457
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G A+ + IM SE KP ++A I G + D + + +
Sbjct: 458 LCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMP 517
Query: 213 NVQTYESLIHG 223
N TY L+ G
Sbjct: 518 NETTYAILVEG 528
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G NV L++ KA R E M+S GIIP ++ LC R +
Sbjct: 88 VTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNV 147
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
++ + G+ N LV+ C LG +++ + +E L + +P + F
Sbjct: 148 GYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSF 206
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M G+ D+ +N+LI GD+ AL L + M+SS P+ T D +
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG-LCPDIVTCDTLL 472
Query: 187 SGFSSLGNV-DAMNKWY----------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A++ G +VQTY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++++I SS A+ +L+ L++ + + + Y LI K A +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAEEL 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ ++S+I C + + A +++++ PN T++ I G+
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ +EM+S G+ P I
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+ +L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE E + P+ + +S +I RLD+ MG + S +
Sbjct: 527 FLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PNVVT 583
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+I Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 584 FTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD-IFQEM 642
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K + A+++ ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFFSGIIR 329
+ G N L+ YC R+D+ E L +T+ + L+H F +
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 446 LNAALDLLQEM 456
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C +++D L + G + L+ + +G ++ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
L+ + P+++
Sbjct: 453 LQEMISSGLCPDIV 466
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GS 574
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 575 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING 634
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 10/295 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ LI +PFA+ F + G+ PD FN+L+ LC D V+ AL+LF M
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHG-LCVEDRVSEALNLFHQM 175
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +PN T+ ++G G + + G TY +++ G K D
Sbjct: 176 FET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234
Query: 230 FDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
S +M + IIP++ I +++ LC + ++ + G +
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYN 294
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
++ +C GR + E+ L+ + + SP+V+ ++ +I + + + E M
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT--YNALINAFVKEGKFFEAEELYDEML 352
Query: 349 KQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
+G+ + M+ C R A + + +L KG T++ L+ GY
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM-FYLMATKGCSP-NLITFNTLIDGY 405
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M G+ D+ +N+LI GD+ AL L + M+SS P+ T D +
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG-LCPDIVTCDTLL 472
Query: 187 SGFSSLGNV-DAMNKWY----------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A++ G +VQTY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++++I SS A+ +L+ L++ + + + Y LI K A +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAEEL 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ ++S+I C + + A +++++ PN T++ I G+
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ +EM+S G+ P I
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+ +L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE E + P+ + +S +I RLD+ MG + S +
Sbjct: 527 FLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PNVVT 583
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+I Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 584 FTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD-IFQEM 642
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K + A+++ ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFFSGIIR 329
+ G N L+ YC R+D+ E L +T+ + L+H F +
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 446 LNAALDLLQEM 456
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C +++D L + G + L+ + +G ++ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
L+ + P+++
Sbjct: 453 LQEMISSGLCPDIV 466
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GS 574
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 575 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING 634
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 10/295 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ LI +PFA+ F + G+ PD FN+L+ LC D V+ AL+LF M
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHG-LCVEDRVSEALNLFHQM 175
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +PN T+ ++G G + + G TY +++ G K D
Sbjct: 176 FET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234
Query: 230 FDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
S +M + IIP++ I +++ LC + ++ + G +
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYN 294
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
++ +C GR + E+ L+ + + SP+V+ ++ +I + + + E M
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT--YNALINAFVKEGKFFEAEELYDEML 352
Query: 349 KQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
+G+ + M+ C R A + + +L KG T++ L+ GY
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM-FYLMATKGCSP-NLITFNTLIDGY 405
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M G+ D+ +N+LI GD+ AL L + M+SS P+ T D +
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG-LCPDIVTCDTLL 472
Query: 187 SGFSSLGNV-DAMNKWY----------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A++ G +VQTY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++++I SS A+ +L+ L++ + + + Y LI K A +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAEEL 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ ++S+I C + + A +++++ PN T++ I G+
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ +EM+S G+ P I
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+ +L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE E + P+ + +S +I RLD+ MG + S +
Sbjct: 527 FLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PNVVT 583
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+I Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 584 FTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD-IFQEM 642
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K+ + A+ + ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFFSGIIR 329
+ G N L+ YC R+D+ E L +T+ + L+H F +
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 446 LNAALDLLQEM 456
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C +++D L + G + L+ + +G ++ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
L+ + P+++
Sbjct: 453 LQEMISSGLCPDIV 466
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GS 574
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 575 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING 634
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 10/295 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ LI +PFA+ F + G+ PD FN+L+ LC D V+ AL+LF M
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHG-LCVEDRVSEALNLFHQM 175
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +PN T+ ++G G + + G TY +++ G K D
Sbjct: 176 FET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGD 234
Query: 230 FDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
S +M + IIP++ I +++ LC + ++ + G +
Sbjct: 235 TVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYN 294
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
++ +C GR + E+ L+ + + SP+V+ ++ +I + + + E M
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVT--YNALINAFVKEGKFFEAEELYDEML 352
Query: 349 KQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
+G+ + M+ C R A + + +L KG T++ L+ GY
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM-FYLMATKGCSP-NLITFNTLIDGY 405
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M G+ D+ +N+LI GD+ AL L + M+SS P+ T D +
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG-LCPDIVTCDTLL 472
Query: 187 SGFSSLGNV-DAMNKWY----------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A++ G +VQTY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++++I SS A+ +L+ L++ + + + Y LI K A +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAEEL 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ ++S+I C + + A +++++ PN T++ I G+
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ +EM+S G+ P I
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+ +L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE E + P+ + +S +I RLD+ MG + S +
Sbjct: 527 FLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PNVVT 583
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+I Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 584 FTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD-IFQEM 642
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K + A+++ ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFFSGIIR 329
+ G N L+ YC R+D+ E L +T+ + L+H F +
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 446 LNAALDLLQEM 456
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C +++D L + G + L+ + +G ++ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
L+ + P+++
Sbjct: 453 LQEMISSGLCPDIV 466
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GS 574
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 575 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING 634
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 10/282 (3%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G+ PD F +L+ LC D V+ AL+LF M + +PN T+
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHG-LCVEDRVSEALNLFHQMFET-TCRPNVVTF 187
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G + + G TY +++ G K D S +M
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 243 LG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ IIP++ I +++ LC + ++ + G + ++ +C GR
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS 307
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ E+ L+ + + SP+V+ ++ +I + + + E M +G+ +
Sbjct: 308 DAEQLLQEMLERKISPDVVT--YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365
Query: 362 MV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
M+ C R A + + +L KG T++ L+ GY
Sbjct: 366 MIDGFCKQNRLDAAEHM-FYLMATKGCSP-NLITFNTLIDGY 405
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M G+ D+ +N+LI GD+ AL L + M+SS P+ T D +
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG-LCPDIVTCDTLL 472
Query: 187 SGFSSLGNV-DAMNKWY----------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A++ G +VQTY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++++I SS A+ +L+ L++ + + + Y LI K A +
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAEEL 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ ++S+I C + + A +++++ PN T++ I G+
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYC 406
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ +EM+S G+ P I
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIV 466
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+ +L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 467 TCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGK 526
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE E + P+ + +S +I RLD+ MG + S +
Sbjct: 527 FLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PNVVT 583
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+I Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 584 FTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALD-IFQEM 642
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K + A+++ ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFFSGIIR 329
+ G N L+ YC R+D+ E L +T+ + L+H F +
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 446 LNAALDLLQEM 456
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C +++D L + G + L+ + +G ++ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
L+ + P+++
Sbjct: 453 LQEMISSGLCPDIV 466
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 516 ILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GS 574
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T+ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 575 KSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING 634
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 635 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 115/282 (40%), Gaps = 10/282 (3%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G+ PD F +L+ LC D V+ AL F M + +PN T+
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHG-LCVEDRVSEALDFFHQMFET-TCRPNVVTF 187
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G + + G TY +++ G K D S +M
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 243 LG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ IIP++ I +++ LC + ++ + G + ++ +C GR
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS 307
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ E+ L+ + + SP+V+ ++ +I + + + E M +G+ +
Sbjct: 308 DAEQLLQEMLERKISPDVVT--YNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365
Query: 362 MV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
M+ C R A + + +L KG T++ L+ GY
Sbjct: 366 MIDGFCKQNRLDAAEHM-FYLMATKGCSP-NLITFNTLIDGY 405
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G+KP++ V+ LI G+V A +F+ M + P+ Y++ I
Sbjct: 451 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM-TKVNVLPDLYCYNSLI 509
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G V+ K++A G N TY LIHG LK D +S ++ + M+ G+
Sbjct: 510 FGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 569
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ I +LE +++V S K +L G ++ + L+ G ++
Sbjct: 570 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 629
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
L + K P+V H +S +I
Sbjct: 630 LSGIEKNGSVPDV--HVYSSLI 649
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 86/228 (37%), Gaps = 35/228 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI N+ A V + +E G PD V++SLI + D A + + M
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM- 668
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN Y+A I G G++ + + +A G N TY SLI GS K D
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728
Query: 231 DSVDRFYEEMMSLGIIP----------------------------------SIPILEKVL 256
+ Y EM++ GI P SI ++
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 788
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+G C R K+ L ++G G N + ++ E G++ E+
Sbjct: 789 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 836
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +KP+ V+ +LI + G+ A + + MV++ +PN TYD +
Sbjct: 311 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG-VQPNKITYDNLV 369
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G +D + + + TY +I G + R EM + GI
Sbjct: 370 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 429
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ GLC + ++ L+ + G K N + L+ YC G V E
Sbjct: 430 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 489
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ +TK N P+ L+ ++ +I + R+++ +M ++GL
Sbjct: 490 FDKMTKVNVLPD--LYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 5/250 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ +I L QS P+KA +LE K LK N YA LI+ + NV A +
Sbjct: 433 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV---YAPLISGYCREGNVSLACEI 489
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M + PD +NSLI G V + F M PN TY I G+
Sbjct: 490 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM-QERGLLPNEFTYSGLIHGYL 548
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++++ + + G N Y L+ K+ D + V ++ M+ G++
Sbjct: 549 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 608
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
I ++ L + ++ L + G + ++ L+ C+ ++ L+ +
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668
Query: 311 TKCNQSPEVL 320
+K P ++
Sbjct: 669 SKKGVDPNIV 678
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ +LI+ L +++ +KA +L+ K + N C Y LI K ++ +A +VF
Sbjct: 645 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC---YNALIDGLCKSGDISYARNVFN 701
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
S+ A+G+ P+ + SLI GD+ A L+ M+++ P++ Y +G SS
Sbjct: 702 SILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSA 760
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G+++ G + ++ ++ +L+ G K + +M G++P+ +
Sbjct: 761 GDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 819
Query: 253 EKVLEGLCARRKLDRVKSFL 272
E ++ GL KL V +
Sbjct: 820 ENIISGLSEAGKLSEVHTIF 839
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 41/242 (16%)
Query: 97 LDKMLKGNESCLDEYAC---LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
DKM K N L + C LI KV V + F M+ +G+ P+ ++ LI
Sbjct: 490 FDKMTKVN--VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPN----------------------------------- 178
L +GD+ +A L + M+ + KPN
Sbjct: 548 LKNGDLESAEQLVQRMLDTG-LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 606
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ Y I SS GN++A + + G +V Y SLI G K D + +
Sbjct: 607 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 666
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G+ P+I +++GLC + ++ +L G N L+ C++G
Sbjct: 667 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 726
Query: 299 RV 300
+
Sbjct: 727 DI 728
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ TY+ I+G G V+ + G + TY +LI+G K+R +
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM + P++ + +++G D +K ++ G + N+ LV+ C++
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
G++D L+ + + + P+ + + G R ++ D
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKD 415
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 3/213 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD+ +N +I A L M + PN TY I G G + +
Sbjct: 394 RPDTITYNLIIEGHFRHHSKKDAFRLLSEM-ENAGISPNVYTYSIMIHGLCQSGEPEKAS 452
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G N Y LI G + + +++M + ++P + ++ GL
Sbjct: 453 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 512
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+++ + + G NE L+ Y + G ++ E+ ++ + P
Sbjct: 513 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 572
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+++ ++ Y SD ++ V + M QG+
Sbjct: 573 VIYI--DLLESYFKSDDIEKVSSTFKSMLDQGV 603
>gi|401398381|ref|XP_003880292.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
gi|325114702|emb|CBZ50258.1| pentatricopeptide repeat-containing protein At5g55840, related
[Neospora caninum Liverpool]
Length = 1844
Score = 75.1 bits (183), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 82/177 (46%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
++G++P++ + + A + +G VV AL LFE M + PN+ Y I GF+ +
Sbjct: 984 SRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVLPNTIMYSTIIKGFAQSKQL 1043
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K YA G ++N+ T+ S++ + D E+M+S GI P + +
Sbjct: 1044 DKALKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKAAMLLEDMLSQGIKPDLITFSTI 1103
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++G C ++++ LK + K + + L+ + GRV E E + +
Sbjct: 1104 IKGYCVHGEMNKALHLLKAMRERQIKPDGVLYNSLLDGCVKTGRVSLCEYLWEEMQR 1160
Score = 45.1 bits (105), Expect = 0.070, Method: Composition-based stats.
Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 6/247 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + + + A+ ++ M+ G+ + FNS++ AC G + A L E M+
Sbjct: 1030 YSTIIKGFAQSKQLDKALKMYAEMQQNGVAINIVTFNSIVDACARVGAMDKAAMLLEDML 1089
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ KP+ T+ I G+ G ++ A + Y SL+ G +K
Sbjct: 1090 -SQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERQIKPDGVLYNSLLDGCVKTGRV 1148
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINENMAQK 289
+ +EEM I PS L +++ +L + +K L G+ IN ++
Sbjct: 1149 SLCEYLWEEMQREEIPPSNFTLTILIKMHGRLYQLQKAFELVKELPRKYGFTINAHVYTC 1208
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ C + R L ++ + N P+ L G I+ + + ++ VE ++ +
Sbjct: 1209 LMAA-CIVNREYSLALEVYDCMERNAVRGDPKTLTTIVGGCIKGRMIREAVNIVERALDQ 1267
Query: 347 MGKQGLS 353
M G S
Sbjct: 1268 MAPSGGS 1274
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 1/182 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ +F SMEA+G+ P+ V+++LI + + AL + M P++
Sbjct: 317 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAFCTPDT 375
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G G+V+A ++ + AG +V TY L+ G KA + D+ +++
Sbjct: 376 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDD 435
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S P++ ++ GLC RR+L + + + + G + + LV C+ G+
Sbjct: 436 MSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495
Query: 300 VD 301
++
Sbjct: 496 LE 497
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 3/226 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M +G+ D+ + +LI L +G + A S+++ M
Sbjct: 238 YTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTM- 296
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S+ P+ T I G G + A + + + A G + N Y +LIHG KAR
Sbjct: 297 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 356
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M P +++GLC ++ ++F +L G K + L
Sbjct: 357 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 416
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALS 334
V +C+ G D + ++ + SP V+ + SG+ + L+
Sbjct: 417 VSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLT 462
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 125/303 (41%), Gaps = 12/303 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV AM F + G D + +++ + + A++L E +++ P
Sbjct: 143 SGKVLA---AMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALME-KITANGCTP 198
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY+A ++G +G ++ + G + +V TY SLI G K + + +
Sbjct: 199 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 258
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM G++ ++ GL K+ + S K + G + ++ C+
Sbjct: 259 KEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKA 318
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
GR+ +++ +P ++ +S +I + ++D + +M K +F +
Sbjct: 319 GRIGAAVRIFKSMEARGLAPNEVV--YSALIHGLCKARKMDCALEMLAQMKK---AFCTP 373
Query: 358 EDVEMVICSYFRCAAYD---RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+ + I C + D F + ++ K TY+ LV+G+ +AG + V
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVF 433
Query: 415 NEM 417
++M
Sbjct: 434 DDM 436
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD +N LI + + A ++ M P+ KT++ + G G V A
Sbjct: 92 PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G ++++ TY +++ K + E++ + G P+I +L GLC
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211
Query: 261 ARRKLDRVKSFLKFLLGGG 279
+L+ L+ ++ G
Sbjct: 212 KMGRLEEAIDLLRKIVDNG 230
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 8/248 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKG----NESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
T LQ + K A + + LD M++ N C A GKV AM VF+ M
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ---AMLVFSKM 400
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD+ + ++I SG V A+ FE M+ E P + Y++ I
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNSLIHSLCIFDK 459
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
D + + G ++ + S+I K ++ ++ M+ +G+ P I
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++G C K+D L ++ G K + L+ YC++ R+++ +
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 315 QSPEVLLH 322
SP+++ +
Sbjct: 580 VSPDIITY 587
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM +G+KP+ + +L+ G +V L ++MV + + PN + I
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH-PNHYVFSILI 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ G VD ++ G + + TY ++I K+ + R++E+M+ +
Sbjct: 382 CAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLS 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC K D+ K + +L G ++ ++ +C+ GRV E E+
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKL 501
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + P+++ +S +I Y L+ ++D+ + M G+
Sbjct: 502 FDLMVRIGVKPDIIT--YSTLIDGYCLAGKMDEATKLLASMVSVGM 545
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +GI D+ FNS+I + G V+ + LF++MV KP+ TY I
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYSTLI 521
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K A+ ++ G + TY +LI+G K + + EM S G+
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GL R+ K + G ++ + ++ C+ DE
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRM 641
Query: 307 LETL 310
+ L
Sbjct: 642 FQNL 645
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G P+ +N L+ AL L ++M + P+ +Y I+G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G++D Y + G NV TY S+I KA+ D M+ G++P+
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G C+ + FLK + G + + L+ C+ GR E + +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++TK PE+ + +++ YA L ++ + M + G+ + ++IC+Y
Sbjct: 329 SMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI-HPNHYVFSILICAYA 385
Query: 369 RCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 386 KQGKVDQAMLVFSKMR 401
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +IA K Q + AM V TSM G+ P+ +NS++ SG A+ + M
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM- 295
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY++ + G K + + G + TY +L+ G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ GI P+ + ++ + K+D+ + G + +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRV++ E + SP ++ ++ +I + D+ D + + M +
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIV--YNSLIHSLCIFDKWDKAKELILEMLDR 473
Query: 351 GLS-----FKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
G+ F S D C R ++L DL ++ K TY L+ GY
Sbjct: 474 GICLDTIFFNSIIDSH---CKEGRVIESEKLFDLM---VRIGVKPDIITYSTLIDGY--- 524
Query: 405 GLSGKLD 411
L+GK+D
Sbjct: 525 CLAGKMD 531
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L+LE LD+ + CLD + +I K V + +F M G+KPD
Sbjct: 462 KAKELILEM-LDRGI-----CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+++LI +G + A L MVS KP+ TY+ I+G+ + ++ +
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPDCVTYNTLINGYCKISRMEDALVLFRE 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++G S ++ TY ++ G + R + Y + G + +L GLC
Sbjct: 575 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNL 634
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
D + L ++ ++ ++GR DE ++ L+ P+V
Sbjct: 635 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMV--SSEEYKPNSKTY 182
A HVF + +G A L CA + A+S + M ++E PN TY
Sbjct: 38 ARHVFDELLRRG---RGASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTPNLCTY 94
Query: 183 DAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFD 231
I GF++LGNV I GF V+ + L+ G R D
Sbjct: 95 GILIGSCCCAGRLDLGFAALGNV----------IKKGFRVDAIAFTPLLKGLCADKRTSD 144
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++D M LG IP++ +L+GLC + L+ + G
Sbjct: 145 AMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 2/229 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M +G+ D+ + +LI L +G + A S+++ M
Sbjct: 59 YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM- 117
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S P+ T I G S G + A + + + A G + N Y +LIHG KAR
Sbjct: 118 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 177
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M P +++GLC ++ ++F +L G K + L
Sbjct: 178 DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ +C+ G D L T N + +H ++ I+ A + ++++
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCT-IDIHTYTAIVDWLAKNKKIEE 285
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + + A+ + M+ PD+ +N LI SGDV A + F+ M+
Sbjct: 164 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARD 229
+ KP+ TY+ ISGF GN DA + A G ++++ TY +++ K +
Sbjct: 224 EAG-CKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKK 282
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ E++ + G P+I +L GLC +L+ L+ ++ G
Sbjct: 283 IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 332
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M +G+ D+ + +LI L +G + A S+++ M
Sbjct: 340 YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM- 398
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S P+ T I G S G + A + + + A G + N Y +LIHG KAR
Sbjct: 399 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 458
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M P +++GLC ++ ++F +L G K + L
Sbjct: 459 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 518
Query: 291 VKCYCELGRVD 301
+ +C+ G D
Sbjct: 519 ISGFCKAGNTD 529
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 1/156 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ +F SMEA+G+ P+ V+++LI + + AL + M P++
Sbjct: 419 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAFCTPDT 477
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G G+V+A ++ + AG +V TY LI G KA + D+ +++
Sbjct: 478 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 537
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
M S ++ ++ GLC RR+L + + + +
Sbjct: 538 MSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHM 573
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 36/196 (18%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++L E +++ P TY+A ++G +G ++ + G + +V TY SLI
Sbjct: 5 AVALME-KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 63
Query: 222 HG-----------------SLKARDFDSV------------------DRFYEEMMSLGII 246
G +L+ D+V Y+ M S G +
Sbjct: 64 DGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCV 123
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + L +++GL ++ K + G NE + L+ C+ ++D E
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183
Query: 307 LETLTKCNQSPEVLLH 322
L + K +P+ + +
Sbjct: 184 LAQMKKAFCTPDTITY 199
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 36/196 (18%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++L E +++ P TY+A ++G +G ++ + G + +V TY SLI
Sbjct: 286 AVALME-KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 344
Query: 222 HG-----------------SLKARDFDSV------------------DRFYEEMMSLGII 246
G +L+ D+V Y+ M S G +
Sbjct: 345 DGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCV 404
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + L +++GL ++ K + G NE + L+ C+ ++D E
Sbjct: 405 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 464
Query: 307 LETLTKCNQSPEVLLH 322
L + K +P+ + +
Sbjct: 465 LAQMKKAFCTPDTITY 480
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 3/250 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ALI L + K + +E + + +G+E + Y +I K N A+ VF
Sbjct: 160 TFNALINGLCNEG--KIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFK 217
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
ME G KPD +N++I + LC +V F + PN TY+ + GF L
Sbjct: 218 KMEQNGCKPDVVTYNTIIDS-LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCIL 276
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G ++ + + + + T L+ G K +E M G+ P+I
Sbjct: 277 GQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTY 336
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++G C +R ++ K + ++ G + L+ +C+ R+DE + L +
Sbjct: 337 NALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYH 396
Query: 313 CNQSPEVLLH 322
+P+ + +
Sbjct: 397 KALNPDTVTY 406
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C++ + + A +F M + + PD+ L+ G V A +FE M
Sbjct: 266 YNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETM- 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + +PN TY+A + G+ ++ K + I G + V +Y LI+G K+R
Sbjct: 325 TEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRM 384
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D EM + P +++GLC + + K + G N L
Sbjct: 385 DEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSIL 444
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C+ G +DE + L+++ + P ++ H
Sbjct: 445 LDGFCKHGHLDEALKLLKSMQEKKLEPNIVHH 476
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK----PNSKTYDAFISGF 189
M+ G+ + N LI CLC + V F + + + +K P + T++A I+G
Sbjct: 114 MDLFGVTHNVYSLNVLI-NCLCRLNHVD----FAVSILGKMFKLGIHPTASTFNALINGL 168
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G + + + + G NV +Y ++I+G K + +++M G P +
Sbjct: 169 CNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDV 228
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+++ LC R ++ FL +L G N +V +C LG+++E
Sbjct: 229 VTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNE 281
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 12/219 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
+A+LV E +K ++ N S +D Y CL L + A VF M QG P
Sbjct: 316 EARLVFETMTEKGVEPNISTYNALMDGY-CLQRLMNE------AKKVFEIMIRQGCAPGV 368
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
+N LI S + A SL M + P++ TY + G G +
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYH-KALNPDTVTYSTLMQGLCQFGRPKEALNIFK 427
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G N+ TY L+ G K D + + M + P+I ++EG+
Sbjct: 428 EMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAG 487
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
KL+ K L G + ++K + G DE
Sbjct: 488 KLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDE 526
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++F M + G+ P+ ++ L+ G + AL L + M ++ +PN + I
Sbjct: 422 ALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSM-QEKKLEPNIVHHTILI 480
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G ++ + ++ A G ++TY +I G LK D + +M G +
Sbjct: 481 EGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL 540
Query: 247 PS 248
P+
Sbjct: 541 PN 542
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 5/232 (2%)
Query: 77 LITSLQSSSPKKAQLV--LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
++T+L + K+ + LE R + +G ++ L Y L+ +V+++ A + M
Sbjct: 221 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 280
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG- 193
G+KPD + +LI C G++ TA+ + + M S E + TY A ISG S G
Sbjct: 281 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGR 339
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+VDA + + AG + TY +I K D + + +EM + G P I
Sbjct: 340 SVDA-ERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYN 398
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
V+ G C+ ++ L +L G N+ L+ +C+ G+V + EE
Sbjct: 399 VVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEE 450
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 6/206 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G++Q+ AM +F M +G+ P++ V +LI A GDV L L M ++ K
Sbjct: 197 TGRIQD---AMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM-ATRGVKA 252
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A ++GF + ++ A N G + TY +LI G K + D+
Sbjct: 253 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMK 312
Query: 238 EEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM G+ ++ GL A R +D + L ++ G + + ++ +C+
Sbjct: 313 QEMSDEGVALDDVTYTALISGLSKAGRSVD-AERILCEMMEAGLQPDNTTYTMVIDAFCK 371
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
G V + L+ + ++P ++ +
Sbjct: 372 NGDVKTGFKHLKEMQNKGKNPGIVTY 397
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L ++ +VP A + + G+ P++ FN L+ + SG + +A ++F+ M+ +
Sbjct: 88 LMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML-RRGVQ 146
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P T++ +SG +++ N AG + +V TY + I G K
Sbjct: 147 PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEM 206
Query: 237 YEEMMSLGIIPSIPILEKVLEGLC 260
+EEM G+ P+ +L +++ C
Sbjct: 207 FEEMCERGLNPNTVVLTTLIDAHC 230
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/121 (15%), Positives = 50/121 (41%)
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+Y + AG + + L+ +++ S ++EM+ G+ P++ ++ G+C
Sbjct: 101 FYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMC 160
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ + + G + ++ C+ GR+ + E E + + +P +
Sbjct: 161 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 220
Query: 321 L 321
+
Sbjct: 221 V 221
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 3/232 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ +V FA+ V M GI+PD+ FN+LI G++ A+ LF MV ++P+
Sbjct: 139 RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV-RRGHQPDV 197
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I+G GN + G N+ Y ++I K + E
Sbjct: 198 ISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSE 257
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI P + +L G C+ L+ ++G N LV C+ G
Sbjct: 258 MVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGM 317
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
V E E +TK P + ++ ++ Y L++++D+ + + M +G
Sbjct: 318 VSEARCVFEAMTKKGAEPNA--YTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 3/230 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
S+ +I L S L L ++++ KG + L Y +I K V AM + +
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEE--KGCKPNLVAYTTIIDSLCKDTLVNDAMDLLS 256
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +GI PD +++++ G + A LF MV PN+ T+ + G
Sbjct: 257 EMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMV-GRNVMPNTVTFTILVDGLCKE 315
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G V + A G N TY +L+ G D + + M+ G P +
Sbjct: 316 GMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSY 375
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G C RR+LD KS L + + L++ C++GR E
Sbjct: 376 NILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQE 425
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + + P++ F L+ G V A +FE M + + +PN+ TY+A +
Sbjct: 286 ATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAM-TKKGAEPNAYTYNALM 344
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ +D K + G + V +Y LI+G K R D EM +
Sbjct: 345 DGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELT 404
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +++GLC + + K + G + L+ C+ G +DE +
Sbjct: 405 PDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKL 464
Query: 307 LETLTKCNQSPEVLLH 322
L+++ + P+++L+
Sbjct: 465 LKSMQESKIEPDIVLY 480
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 34/210 (16%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV------------------- 170
VF +M +G +P++ +N+L+ + + A + +IMV
Sbjct: 324 VFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYC 383
Query: 171 ---------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S +E P++ TY + G +G + ++G ++
Sbjct: 384 KRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLM 443
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L+ G K D + + M I P I + ++EG+ KL+ K L
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL 503
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
G + ++K + G DE E
Sbjct: 504 FADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 125/308 (40%), Gaps = 11/308 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG L Y+ +IA + +V A+ + SM +G+ PD+ ++ +LI
Sbjct: 261 KGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTE 320
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
S+ + M + KP+ Y A I+GF ++ + A +N TY +LI
Sbjct: 321 GKSMLDEMYTMG-LKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALI 379
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG K D + + + EM +GI P I ++EG + +++ L +
Sbjct: 380 HGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLT 439
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N M +V C G + E + + P +++ ++ I++ R ++
Sbjct: 440 ANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVI--YTTIVKGLVKEGRFEEAI 497
Query: 342 YSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFL 397
+G M QGLS DV VI + + + +L + I K TY
Sbjct: 498 KILGVMKDQGLS----PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAF 553
Query: 398 VAGYRRAG 405
+ GY RAG
Sbjct: 554 IHGYCRAG 561
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 5/253 (1%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
++ K+ LD + ++ ALI ++ S A V E + +K N Y
Sbjct: 319 TEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTF---TY 375
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI K+ ++ A +F+ M GIKPD +N LI ++ A L I +
Sbjct: 376 YALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL-IEIK 434
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
E N+ A ++G G++ N+ + I+ G N+ Y +++ G +K F+
Sbjct: 435 KENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFE 494
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ M G+ P + V+ G C K++ KS+L ++ G K N +
Sbjct: 495 EAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFI 554
Query: 292 KCYCELGRVDELE 304
YC G + E
Sbjct: 555 HGYCRAGEMQAAE 567
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + G+KP+ ++ +++ + G A+ + +M + P+ Y+ I
Sbjct: 461 ANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVM-KDQGLSPDVFCYNTVI 519
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ + IA G NV TY + IHG +A + + +R + EM+ GI
Sbjct: 520 IGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIA 579
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKF 274
P+ I +++G C + + K+F KF
Sbjct: 580 PNDVICTDLIDGYC--KDGNTTKAFAKF 605
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 53/276 (19%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK+Q AM VF+ + +G+ PD + SLI GD+ A L + M + P
Sbjct: 630 NGKLQE---AMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCK-KGINP 685
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A I+G LG + + + G + N TY ++I G K+ + + +
Sbjct: 686 NIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLF 745
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKFLLGG------------------ 278
M +G+ P + +++G C ++ S FL + G
Sbjct: 746 HGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLG 805
Query: 279 ----GWKINENMAQK-----------LVKCYCELGRVDELEEQLETLTKCNQSPEV---- 319
+++ E+M L++ +C +G + E E+ + K N P V
Sbjct: 806 KLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYT 865
Query: 320 -LLHFFSGIIR---LYALSDRL-------DDVEYSV 344
LLH ++ I R +++L D + DD+ +SV
Sbjct: 866 SLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSV 901
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 6/194 (3%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N + +++ALI L + KA+ + + +K L N Y+ +IA K N+
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSV---TYSTIIAGYCKSANL 738
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F M+ G+ PDS V+ +LI C +G+ ALSLF MV EE ++ ++A
Sbjct: 739 TEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMV--EEGIASTPAFNA 796
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I GF LG + + + + N TY LI + ++ + EM
Sbjct: 797 LIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRN 856
Query: 245 IIPSIPILEKVLEG 258
++P++ +L G
Sbjct: 857 VMPNVLTYTSLLHG 870
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 9/219 (4%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTAL 163
+ Y CLI KVQN+ A + ++ + + ++ A+ N L C C GD+ A
Sbjct: 407 IQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGL-CHC---GDLTRAN 462
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
LF+ M+S KPN Y + G G + K G S +V Y ++I G
Sbjct: 463 ELFQEMISWG-LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIG 521
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
KA + + EM++ G+ P++ + G C ++ + +L G N
Sbjct: 522 FCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPN 581
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ + L+ YC+ G + + + P+V H
Sbjct: 582 DVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTH 620
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/389 (20%), Positives = 145/389 (37%), Gaps = 42/389 (10%)
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120
S D+F +N+ +I ++ ++ + L + K LK N + Y I +
Sbjct: 509 SPDVFCYNT------VIIGFCKAGKMEEGKSYLVEMIAKGLKPN---VYTYGAFIHGYCR 559
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+ A F M GI P+ + LI G+ A + F M+ + P+ +
Sbjct: 560 AGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLD-QGVLPDVQ 618
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T+ I G S G + ++ + G +V TY SLI K D + +++M
Sbjct: 619 THSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDM 678
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
GI P+I ++ GLC ++ + + + G N ++ YC+ +
Sbjct: 679 CKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANL 738
Query: 301 DELEEQLETLTKCNQSPEVLLH--FFSGIIRL----YALSDRLDDVEYSVG--------- 345
E + + P+ ++ G + ALS L VE +
Sbjct: 739 TEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALI 798
Query: 346 ----RMGKQGLSFKSAED----------VEMVICSYFRCAA---YDRLDLFLDHIKGSYK 388
++GK +++ ED V I + C + LF++ K +
Sbjct: 799 DGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVM 858
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEM 417
TY L+ GY R G ++ S+ +EM
Sbjct: 859 PNVLTYTSLLHGYNRIGRRSEMFSLFDEM 887
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 3/206 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+ QG+ PD +N++I +G + S M++ + KPN TY AFI
Sbjct: 496 AIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIA-KGLKPNVYTYGAFI 554
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G + A + + + +G + N LI G K + + M+ G++
Sbjct: 555 HGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL 614
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GL KL LL G + L+ C+ G + E
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRL 330
+ + K +P ++ + +G+ +L
Sbjct: 675 HDDMCKKGINPNIVTYNALINGLCKL 700
>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Glycine max]
Length = 507
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 7/206 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F ME G+KP + FN L+ S V A +F+ M P+ K+Y +
Sbjct: 173 AIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKM-RKLRLDPDIKSYTILL 231
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+S N+ +N+ GF ++V Y +++ KA+ FD Y EM + G+
Sbjct: 232 EGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEMKARGVR 291
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS + ++ GL + ++LD F + G+ +V YC R+D+
Sbjct: 292 PSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYRM 351
Query: 307 LETLTKCNQSPE------VLLHFFSG 326
+ + KC P VL H G
Sbjct: 352 VGEMKKCGIGPNSRTFDIVLHHLIKG 377
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 9/242 (3%)
Query: 58 TLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLI 115
T + ++ + ++ L+ L +S S ++A V DKM K + + Y L+
Sbjct: 176 TFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVF----DKMRKLRLDPDIKSYTILL 231
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+ QN+ V ME +G + D + ++ A + A+ L+ M +
Sbjct: 232 EGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEM-KARGV 290
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+P+ Y I+G S +D +++ + A+GF TY +++ + D R
Sbjct: 291 RPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEAPTYNAVVGAYCWSLRMDDAYR 350
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINENMAQKLVKC 293
EM GI P+ + VL L R+++ S + + GG G + + + + +V+
Sbjct: 351 MVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTYEIMVRM 410
Query: 294 YC 295
+C
Sbjct: 411 FC 412
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A+ ++ M+A+G++P V+ +LI + AL FE+
Sbjct: 262 YGIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSK 321
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S + P + TY+A + + +D + G N +T++ ++H +K R
Sbjct: 322 ASG-FVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRI 380
Query: 231 D------------------SVDRF-------------------YEEMMSLGIIPSIPILE 253
+ SV + ++EM GI+P + +
Sbjct: 381 EEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFS 440
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ LC KLD + + +L G + M L + + G
Sbjct: 441 TLVCALCHESKLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAG 485
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 38/230 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ VFT M++ G+ P FNSL+ L G A +++ M+S+ P++ T++ I
Sbjct: 168 SIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILI 227
Query: 187 SGFSSLGNVD------------------------------AMNKWYAANIAAG------- 209
GF G VD A A N+ G
Sbjct: 228 RGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVD 287
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ NV TY +LI G R+ + +EEM++ G+ + +++GLC RK +++K
Sbjct: 288 LNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIK 347
Query: 270 SFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ G G + + L+ C+C G +D+ + E +++ P+
Sbjct: 348 DILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPD 397
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 11/220 (5%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVV 160
G E + Y L+ + V A +V M + + P+ + +LI ++
Sbjct: 250 GCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE 309
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYES 219
AL++FE MV+ + K N+ TY+ I G + + G FS + T+ +
Sbjct: 310 KALAVFEEMVN-QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNT 368
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+H A + D + +E M L I P ++ LC ++ + L LL
Sbjct: 369 LMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERK 428
Query: 280 WKINENMAQKLVKCY-------CELGRVDELEEQLETLTK 312
++ + + LV Y CE G+ + E+ L +
Sbjct: 429 ILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMR 468
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 11/215 (5%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-------DVVTALSLFEIMVSSEEY 175
N+ A+ VF M I+PDSA +++L+ + LC G D++ L +I++S +
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALVRS-LCQGGHYEKAEDLLDKLLERKILLSGDGC 436
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
KP Y+ G K + + G + + +Y++LI G K F+S
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYE 495
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
M+ P E ++ GL K L+ +L + N + ++
Sbjct: 496 LLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLL 555
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
E GR E ++ + N L F +G +RL
Sbjct: 556 EQGRASESASLIQLMLDKNIRQN--LSFSTGCVRL 588
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK + AM +F+ M G +PD++V+N+LI A L S D +V LS F
Sbjct: 130 YSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYF 189
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M E KPN TY+ F+ VD +N + + S ++ TY ++ K
Sbjct: 190 EKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGK 249
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++ M S I P I +++ ++ D+++ K LL
Sbjct: 250 NGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLL 299
>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 5/268 (1%)
Query: 87 KKAQLVLEWRLDKML--KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K+ ++ + L K++ +G L Y+ LI K + +F+ +G+K D
Sbjct: 190 KRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVV 249
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
VF+S I + G + TA +++ M+ + PN TY I G G + Y
Sbjct: 250 VFSSTIDVYVKFGYLTTAFDVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGIYCQ 308
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G +V TY SLI G K + S YE+M+ +G P + I +++GLC +
Sbjct: 309 ILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGL 368
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ F LG + N + L+ +C L R DE + + P+V
Sbjct: 369 MLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVAT--I 426
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ ++R+ + RL + + RM K GL
Sbjct: 427 TTLMRVTVMEGRLKEGLFLFFRMFKMGL 454
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 11/235 (4%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
K L L +R+ KM G E + L+ K + +F M+ I D AV N
Sbjct: 440 KEGLFLFFRMFKM--GLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCN 497
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+I L G V S F + + +P+ TY+ I G+ SL +D + +
Sbjct: 498 VVI-NLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKF 556
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
F N T LIH K D D R + +++GLC R ++D
Sbjct: 557 TPFGPNAVTLTILIHTLCKNSDMDGALRIISPSII--------SYSIIIDGLCKRGRVDE 608
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ + + L++ C++GR+ E E + + P+ LL
Sbjct: 609 ATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPDDLLQ 663
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 3/218 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K+ + A+++ ME IKP+ +++++I
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLW 260
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +L+ M + P+ TY+ I GF S G + + + NV
Sbjct: 261 KDGRHSDAHNLYTEMQEKGIF-PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNV 319
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K R F + Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 320 VTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYV 379
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ G + L+ YC R+D+ E L +T+
Sbjct: 380 MATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTE 417
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 149/360 (41%), Gaps = 22/360 (6%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++ +I SS +AQ +L+ L++ + N + Y+ LI K + A +
Sbjct: 285 FTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPN---VVTYSALINAYVKERKFFEAEEL 341
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +GI P++ +NS+I + A +F +M +++ P+ T++ I G+
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM-ATKGCSPDVFTFNTLIDGYC 400
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + G + TY +LIHG D ++ ++M+S G+ P I
Sbjct: 401 GAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIV 460
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCEL-------GR 299
+L+GLC KL K + ++ N + V+ Y L G+
Sbjct: 461 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGK 520
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
E EE + + P + +S +I RLD+ MG + S
Sbjct: 521 FLEAEELYKEMPHRGIVPNTIT--YSSMINGLCKQSRLDEATQMFDSMGSKSFS-PDVVT 577
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
++ Y + D L+LF + + TY L+ G+R+ G ++G LD + EM
Sbjct: 578 FNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALD-IFQEM 636
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +++T M+ +GI PD +N +I SG A L + M+ + PN TY A I
Sbjct: 268 AHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE-RKINPNVVTYSALI 326
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + + Y + G N TY S+I G K D+ + + M + G
Sbjct: 327 NAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCS 386
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +++G C +++D L + G + L+ +C +G ++ +
Sbjct: 387 PDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDL 446
Query: 307 LETLTKCNQSPEVL 320
+ + P+++
Sbjct: 447 SQQMISSGVCPDIV 460
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI P++ ++S+I + A +F+ M S
Sbjct: 510 ILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSM-GS 568
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + P+ T++ +SG+ G VD + + G + TY +LIHG K + +
Sbjct: 569 KSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNING 628
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L L ++ +L R + L+ L
Sbjct: 629 ALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 39/264 (14%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICAC------------------------------ 153
+PFA+ F + G +PD F++L+
Sbjct: 128 LPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNG 187
Query: 154 LC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFS 211
LC G VV A++L + MV + +PN TY + G +G+ V A+N +
Sbjct: 188 LCREGRVVEAVALLDRMV-EDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIK 246
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV Y ++I G K Y EM GI P + +++G C+ + +
Sbjct: 247 PNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRL 306
Query: 272 LKFLLGGGWKINENMA--QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
L+ +L KIN N+ L+ Y + + E EE + + P + ++ +I
Sbjct: 307 LQEML--ERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTIT--YNSMID 362
Query: 330 LYALSDRLDDVEYSVGRMGKQGLS 353
+ +RLD E+ M +G S
Sbjct: 363 GFCKQNRLDAAEHMFYVMATKGCS 386
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 38/278 (13%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ LI ++Q V FA V + G +PD+ F+SLI A+ F+ M
Sbjct: 121 HFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEM 180
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNK--- 200
V+S Y+PN TY+ I GF +G +D + K
Sbjct: 181 VASG-YQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239
Query: 201 ------WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
++ G +V TY L+HG + + + EMMSL I+P +
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++ LC L + +K ++ G + N L+ YC +V E + +
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P V+ ++ +I Y + R+D+ M +GL
Sbjct: 360 CMPNVV--SYNILINGYCKAQRIDEARELFDEMSFRGL 395
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + I PD FN L+ G + A + +IM+ + +PN TY++ +
Sbjct: 278 ASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIE-KGVEPNYATYNSLM 336
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ V + A I G NV +Y LI+G KA+ D ++EM G+I
Sbjct: 337 NGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLI 396
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P+ ++ GLC + + K + G + L+ C+LG +D
Sbjct: 397 PNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLD 451
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 5/196 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAF 185
A+ +F+ ++ +G++PD + S++ LC+ D A +LF M+S P+ T++
Sbjct: 243 ALDIFSEIKGKGVRPDVFTY-SILMHGLCNSDQKEEASALFNEMMSLN-IMPDVVTFNIL 300
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLG 244
+ G + I G N TY SL++G L+ + F++ ++ M++ G
Sbjct: 301 VDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEA-RMVFDAMITKG 359
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+P++ ++ G C +++D + + G N L+ C+ GR E
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419
Query: 305 EQLETLTKCNQSPEVL 320
E + + SP+++
Sbjct: 420 ELFKDMQAQGCSPDLV 435
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 3/228 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K++ A SM +G++P+ FN +I LC + S + +
Sbjct: 21 YNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING-LCRDGRLKETSEVLVEM 79
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + Y P+ TY+ ++G+ GN +A + G S NV TY SLI+ KA +
Sbjct: 80 SRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNL 139
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+++M G+ P+ ++ G + LD L + G+ + L
Sbjct: 140 NRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNAL 199
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ +C LGR++E L+ + P+V+ +S II +A + LD
Sbjct: 200 INGHCVLGRMEEAIGLLQDMVGKGVLPDVV--SYSTIISGFARNQELD 245
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 31/241 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y+ +I+ + Q + A + M + + PD+ ++SLI LC +T A +F+ M
Sbjct: 231 YSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQG-LCEQRRLTEACDMFQEM 289
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ + P+ TY I+ + G+++ + I GF + TY LI+G K
Sbjct: 290 LTIK-LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQAR 348
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
R ++ IPS ++E C I A
Sbjct: 349 SKEARRLLLKLFYDDSIPSAVTYNTLIENCC--------------------NIEFKSAVA 388
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSP-----EVLLHF---FSGIIRLYALSDRLDDVE 341
LVK +C G +DE ++ E++ N P V++H +++ Y L + V+
Sbjct: 389 LVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVD 448
Query: 342 Y 342
+
Sbjct: 449 F 449
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
RF++EM G +P++ +++G C ++ D FL+ + G + N ++
Sbjct: 4 RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGL 63
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C GR+ E E L +++ P+ + ++ ++ Y M + GLS
Sbjct: 64 CRDGRLKETSEVLVEMSRKGYVPDEVT--YNTLVNGYCKEGNFHQALVLHAEMVRNGLS- 120
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLD--HIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
+ +I S + +R F D H++G R TY ++ G+ + GL +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNER-TYTTIINGFAQQGLLDEAYR 179
Query: 413 VINEM 417
V+NEM
Sbjct: 180 VLNEM 184
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A+H+ M +G PD+ +N LI A L + +
Sbjct: 301 YTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLL-LKL 359
Query: 171 SSEEYKPNSKTYD---------------AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
++ P++ TY+ A + GF G +D ++ + + I N
Sbjct: 360 FYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEA 419
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
Y +IHG + + + Y+EM+ + +P
Sbjct: 420 IYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVP 451
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 39/260 (15%)
Query: 177 PNSKTYDAFISGFSSLGNVD-------AMN-KWYAANIAA-------------------- 208
PN TY+ I G+ L D +M K N+
Sbjct: 16 PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75
Query: 209 -------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
G+ + TY +L++G K +F + EM+ G+ P++ ++ +C
Sbjct: 76 LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L+R F + G NE ++ + + G +DE L +T+ P ++
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFL 380
++ +I + + R+++ + M +G+ +I + R DR + +
Sbjct: 196 --YNALINGHCVLGRMEEAIGLLQDMVGKGV-LPDVVSYSTIISGFARNQELDRAFQMKV 252
Query: 381 DHIKGSYKLRRATYDFLVAG 400
+ I S TY L+ G
Sbjct: 253 EMIGKSVLPDAVTYSSLIQG 272
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 23/268 (8%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K QL+ E M KG Y+ +I V A +F M+ G+ PD +
Sbjct: 271 KAFQLIKEM----MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI + +G + A LFE M S P TY A I + V N + +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG----------------IIPSIP 250
AG N TY +L+ G KA + Y +++ + P++
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC K+D L +L G + N + L+ +C+ G++D +E +
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLD 338
TKC P V H ++ +I RLD
Sbjct: 506 TKCGYLPSV--HTYTSLIDRMFKDGRLD 531
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 53/341 (15%)
Query: 94 EWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+W ++M G + Y LI K + VP A +F M G +P+ + +L+
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402
Query: 153 CLCSGDVVTALSLFEIMVSSEE---------------YKPNSKTYDAFISGFSSLGNVDA 197
+G++ A ++ ++ + + PN TY A + G VD
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ A +++G N Y++LI G KA DS + +M G +PS+ +++
Sbjct: 463 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLID 522
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ +LD L +L N ++ C +G ++ + L + + SP
Sbjct: 523 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
V+ + AL D L G+ GK LS LD
Sbjct: 583 NVVTY--------TALIDGL-------GKAGKIDLS----------------------LD 605
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + TY L+ AGL K ++ EMK
Sbjct: 606 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 17/246 (6%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG K + + + + M +G P+ ++FNSL+ + D A L M +
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 207
Query: 175 YKPNSKTYDAFIS---GFSSLGNVDAMN---KWYAANIAAGF---SVNVQTYESLIHGSL 225
P Y+ FI G L + D ++ K Y +AA VNV + + G
Sbjct: 208 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K FD + +EMM G +P KV+ LC K+++ + + G +
Sbjct: 268 K---FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C+ G +++ + E + SP V+ ++ +I Y + ++
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT--YTALIHAYLKAKQVPQANDIFH 382
Query: 346 RMGKQG 351
RM G
Sbjct: 383 RMVDAG 388
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 107/290 (36%), Gaps = 35/290 (12%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD ML G E Y LI K + A VF M G P + SLI
Sbjct: 467 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 526
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A+ + M+ + PN TY A I G +G + K + G S NV
Sbjct: 527 DGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL--- 272
TY +LI G KA D + +M G P+ ++ LCA LD+ + L
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 645
Query: 273 ------KFLLG-------------GGWKINENMAQ-----------KLVKCYCELGRVDE 302
K+L G I E M L+ C+ + GR++
Sbjct: 646 KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEI 705
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E + + + S + ++ +I+ L+ ++++ M ++G
Sbjct: 706 AMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGF 755
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 33/187 (17%)
Query: 175 YKPNSKTYDAFISGFSSLGNVD--------------AMNKWYAANIAAG----------- 209
Y+P+ TY+A + SS G VD M+++ A
Sbjct: 36 YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95
Query: 210 -------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
F ++ +I G ++A FD F M IP++ +L G +
Sbjct: 96 DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 155
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLL 321
++L K + ++ G N ++ LV YC + L +T C P V+
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215
Query: 322 HFFSGII 328
+ F G I
Sbjct: 216 NIFIGSI 222
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 36/201 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI GK + ++ +FT M +G P+ + LI LC+ ++
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH-LCAAGLLD 636
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFS-----SLGNVDAMNKWYAANIAAGFSV---- 212
L + + + Y I GFS SLG ++ M + IA + +
Sbjct: 637 KARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 696
Query: 213 ----------------------NVQT----YESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+V+T Y SLI A + R Y EM G +
Sbjct: 697 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 756
Query: 247 PSIPILEKVLEGLCARRKLDR 267
P + + +++GL +K D
Sbjct: 757 PELSVFVCLIKGLVEVKKWDE 777
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 11/243 (4%)
Query: 36 SVSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+V S N +++ L +V +++ ++ + ++ + + +++ LI K ++
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLI----DGYCKMGRIGKM 209
Query: 95 WRLDKMLK---GNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
++ D +LK C +E I + G K +NV AM VF M+ QG++P+ +N L
Sbjct: 210 YKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNIL 269
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I G V A++L + MVSS + +PN T++ I+GF V+ + G
Sbjct: 270 INGLCSDGKVDEAVALRDQMVSS-DLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQG 328
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
N TY +LI K + Y M+ GI P + ++ GLC + + +
Sbjct: 329 VDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAAR 388
Query: 270 SFL 272
S +
Sbjct: 389 SLM 391
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 4/186 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYK 176
KV + A V M+ G+ P+ +N+LI C G + A ++ + MV+ +
Sbjct: 167 KVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVA-KGIC 225
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+ I GF NV + + G NV TY LI+G D
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++M+S + P++ ++ G C + ++ + + G N L+ YC+
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345
Query: 297 LGRVDE 302
GR+++
Sbjct: 346 DGRMED 351
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALSLFEIMVSSEEYKPNSKTY 182
V+ M + I+ + FN ++ LC +GDV+ + ++ + PN TY
Sbjct: 142 VYREMIKRKIELNVISFN-IVVNGLCKVGKLNRAGDVIEDMKVWGV-------SPNVITY 193
Query: 183 DAFISGFSSLGNVDAMNKWYA---ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ I G+ +G + M K A +A G N TY LI G K + R + E
Sbjct: 194 NTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGE 253
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G+ P++ ++ GLC+ K+D + ++ + N L+ +C+
Sbjct: 254 MQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKT 313
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
V+E + K P + ++ +I Y R++D
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMT--YTTLIDAYCKDGRMED 351
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLIA + +V A + M ++ + D +N LI + G+ A+ L + M
Sbjct: 371 YNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMF 430
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARD 229
+ P+ TY+ + G+ GN+ A G NV T+ LI G LK R
Sbjct: 431 E-KGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGR- 488
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + EM+ G++P+ E + E
Sbjct: 489 LEDANGLLNEMLERGLVPNRTTYEIIKE 516
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 129/305 (42%), Gaps = 17/305 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+V++ A++ M Q G PD FN+L+ +G V A+ + ++M+ E Y P
Sbjct: 273 GRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ-EGYDP 328
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY++ ISG LG V + I S N TY +LI K +
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ S GI+P + +++GLC R + + G + +E L+ C
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 298 GRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G++DE + +Q+E L+ C +S + ++ +I + +++ + E M G+S
Sbjct: 449 GKLDEALNMLKQME-LSGCARS----VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 355 KSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
S ++ +C R D L I K + TY+ L+ + R G K
Sbjct: 504 NSVTYNTLIDGLCKSRRVE--DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 413 VINEM 417
++ M
Sbjct: 562 IVQAM 566
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWR 96
N L++ L + +K ++ +D+ ++ ++++++I+ L + K+A VL+
Sbjct: 299 NTLVNGLCKA--GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ + N Y LI+ K V A + + ++GI PD FNSLI +
Sbjct: 357 ITRDCSPNTVT---YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQ 215
+ A+ LFE M S+ +P+ TY+ I S G +D A+N ++ G + +V
Sbjct: 414 RNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVI 471
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + ++EM G+ + +++GLC R+++ + +
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+ G K ++ L+ +C G + + + ++ +T P+++ + SG+ +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GIKPD + FN LI A + + A+ + E M S P+ KT+ + G+ G
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTVMQGYIEEG 238
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPIL 252
++D + + G S + + ++HG K + F +EM + G P
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ GLC + + +L G+ + ++ C+LG V E E L+ +
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 313 CNQSPEVLLH 322
+ SP + +
Sbjct: 359 RDCSPNTVTY 368
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ LI SL S L + +++ L G + Y LI K A +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME--LSGCARSVITYNTLIDGFCKANKTREAEEI 492
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ME G+ +S +N+LI S V A L + M+ E KP+ TY++ ++ F
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM-EGQKPDKYTYNSLLTHFC 551
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++ A + G ++ TY +LI G KA + + + GI +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH 611
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLL 276
V++GL +RK + + +L
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREML 637
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 3/211 (1%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+N AM +F M ++G +PD +N LI + G + AL++ + M S + +
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR-SVI 471
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I GF + + G S N TY +LI G K+R + + ++M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G P +L C + + ++ + G + + L+ C+ GRV
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 301 DELEEQLET--LTKCNQSPEVLLHFFSGIIR 329
+ + L + + N +P G+ R
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KPD+ +N ++ L G+ + + + +S KP+ T++ I +
Sbjct: 149 GLKPDTHFYNRML-NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G + +T+ +++ G ++ D D R E+M+ G S + ++
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVH 267
Query: 258 GLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C +++ +F++ + G+ ++ LV C+ G V E ++ + +
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 317 PEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
P+V + SG+ +L + + ++ ++ + R
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 11/259 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQN 123
F + F+++++I KK +V R+ D + KG + DE+ ++G Q+
Sbjct: 395 GFEPNDFTYNSII----DGYCKKGMVVDANRILKDAVFKGFKP--DEFTYCSLVNGFCQD 448
Query: 124 --VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
AM VF +G++P V+N+LI G ++ AL L M + + KP+ T
Sbjct: 449 GDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM-AEKGCKPDIWT 507
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I+G +G + N I G ++ TY +L+ G + DS M
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
S G+ P + +L GLC K + V K + G N +++ C +V+
Sbjct: 568 SQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVN 627
Query: 302 ELEEQLETLTKCNQSPEVL 320
E + L + +P+V+
Sbjct: 628 EAVDLLGEMKSKGLTPDVV 646
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 2/204 (0%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ L+ L ++ K++ V+E KG + Y +I + V A+ +
Sbjct: 577 TYNTLLNGLCKTA--KSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLG 634
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+++G+ PD F +LI GD+ A LF M + + TY+ IS FS
Sbjct: 635 EMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQ 694
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
N+ + ++ G + TY LI G K + + +F E + G IPS+
Sbjct: 695 LNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTF 754
Query: 253 EKVLEGLCARRKLDRVKSFLKFLL 276
+VL LC K+ + ++
Sbjct: 755 GRVLNCLCVEHKVQEAVGIIHLMV 778
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 93/217 (42%), Gaps = 3/217 (1%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G KPD + SL+ GD A+++F+ + + +P+ Y+ I G G +
Sbjct: 429 KGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLG-KGLRPSIIVYNTLIKGLCQQGLIL 487
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ G ++ TY +I+G K + + ++ G IP I ++
Sbjct: 488 PALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLV 547
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+G C + KLD + + G + L+ C+ + +E+ E + +T+ +
Sbjct: 548 DGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCA 607
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P ++ ++ II S ++++ +G M +GL+
Sbjct: 608 PNIIT--YNTIIESLCNSKKVNEAVDLLGEMKSKGLT 642
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + PD FN L+ A G V+ + LF+ V PN T++ FI
Sbjct: 279 ARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFD-KVLKRGVCPNLFTFNIFI 337
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++D + G +V TY ++I G + + +M++ G
Sbjct: 338 QGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+ +++G C + + LK + G+K +E LV +C+ G D+
Sbjct: 398 PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQ 453
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F + +G+ P+ FN I G + A+ L VS E +P+ TY+ I G
Sbjct: 317 LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGC-VSREGLRPDVVTYNTVICGL 375
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
V + + GF N TY S+I G K +R ++ + G P
Sbjct: 376 CRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ G C D+ + K LG G + + + L+K C+ G + + +
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE 495
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ + P++ + +G+ ++ LSD
Sbjct: 496 MAEKGCKPDIWTYNLIINGLCKMGCLSD 523
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 100/244 (40%), Gaps = 5/244 (2%)
Query: 58 TLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116
T + +D+F + S +S++A++ L + +A V DK + ES + Y I
Sbjct: 177 TFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKV---ESDVYTYTIRIK 233
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
+ A+ + +M G ++ + +++ GD A LF+ M+
Sbjct: 234 SFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC-LC 292
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ T++ + G V + + + G N+ T+ I G K D R
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ G+ P + V+ GLC + ++ + L ++ GG++ N+ ++ YC+
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412
Query: 297 LGRV 300
G V
Sbjct: 413 KGMV 416
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 86/237 (36%), Gaps = 40/237 (16%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F +F++ +L+ Q P +A V + D + KG + Y LI + +
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFK---DGLGKGLRPSIIVYNTLIKGLCQQGLI 486
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-----------GDVVTALSLFEIMVS-- 171
A+ + M +G KPD +N LI LC GD +T + +I
Sbjct: 487 LPALQLMNEMAEKGCKPDIWTYN-LIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNT 545
Query: 172 ----------------------SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
S+ P+ TY+ ++G + + + + A G
Sbjct: 546 LVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG 605
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ N+ TY ++I ++ + EM S G+ P + ++ G C LD
Sbjct: 606 CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLD 662
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 40/279 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-----------CACL----- 154
Y +I K ++ A +FT M+ G PD +NSLI C C+
Sbjct: 59 YNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMK 118
Query: 155 ---CSGDVVTALSL------FEIMVSSEEY---------KPNSKTYDAFISGFSSLGNVD 196
C DV+T +L FE M + E+ KPN TY FI F G +
Sbjct: 119 DADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 178
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
K++ + N TY SLI + KA + + EE++ GI ++ +L
Sbjct: 179 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+GLC ++ + + +L G N+ LV + + ++ ++ L+ + +
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298
Query: 317 PEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLS 353
P++LL+ G I L+ L + RL++ + +G + + G++
Sbjct: 299 PDLLLY---GTI-LWGLCNESRLEEAKLLIGEIKESGIN 333
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 5/186 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F M + P+ + SLI A +G++ AL L E ++ + K N TY A +
Sbjct: 180 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG-IKLNVVTYTALL 238
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + + A + AG + N +TY +L+HG +KA++ + +EM I
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE---- 302
P + + +L GLC +L+ K + + G N + L+ Y + G+ E
Sbjct: 299 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTL 358
Query: 303 LEEQLE 308
LEE L+
Sbjct: 359 LEEMLD 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 5/199 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV + F M A GIK +N +I GD+ A SLF M + + P+
Sbjct: 33 KVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPDI 91
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY++ I G LG +D + A +V TY +LI+ K F E
Sbjct: 92 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 151
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + G+ P++ ++ C L F + NE L+ C+ G
Sbjct: 152 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 211
Query: 300 VDE----LEEQLETLTKCN 314
+ E +EE L+ K N
Sbjct: 212 LAEALKLVEEILQAGIKLN 230
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++ GI ++ ++ +L+ A SG AL+L E M+ + G
Sbjct: 326 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD-------------LVDGLCKN 372
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ K + + G + Y +LI G++K + + M+ +G+ +
Sbjct: 373 NCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAY 432
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEEQLE 308
++ GL ++ + ++ L ++G G +E + L+K Y LG+VDE LE Q E
Sbjct: 433 TALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNE 489
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 56/146 (38%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P ++ +A + S +G D K++ AAG +V TY +I K D +
Sbjct: 19 PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M G P I +++G LD + + + L+ C+C+
Sbjct: 79 FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK 138
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
R+ + E L + P V+ +
Sbjct: 139 FERMPKAFEFLHEMKANGLKPNVVTY 164
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N A + M +G+ P +N+LI G +AL + +M
Sbjct: 347 YTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLM- 405
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN++TY+ I GF N+ + NV TY LIHG K D
Sbjct: 406 ESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDL 465
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
S + M G++P ++ LC R ++ +S + L G K NE + L
Sbjct: 466 GSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTL 525
Query: 291 VKCYCELGRVDE 302
+ YC++G+V +
Sbjct: 526 IDGYCKVGKVSD 537
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 3/231 (1%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM + M + ++P+ +N LI GD+ +A L +M S P+ T
Sbjct: 428 KNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG-LVPDEWT 486
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y FI G V+ + + G N Y +LI G K ++M+
Sbjct: 487 YSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKML 546
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
S G +P+ +++G C + + + ++ + + L+ + D
Sbjct: 547 SAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFD 606
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + + + P+V + ++ I Y RL D E + +M +G+
Sbjct: 607 QAHDMFDQMLSTGSHPDVFI--YTAFIHAYCSHGRLKDAEVLICKMNAKGI 655
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 4/235 (1%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA +L L++ L+ N + Y LI K ++ A + + M G+ PD ++
Sbjct: 432 KAMSLLHKMLERKLQPN---VVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYS 488
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
I G V A SLFE + + K N Y I G+ +G V ++
Sbjct: 489 VFIDTLCKRGLVEEARSLFESL-KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS 547
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
AG N TY SLI G K ++F + M+ I P+ +++ L + D+
Sbjct: 548 AGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQ 607
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+L G + + + YC GR+ + E + + P+ +L+
Sbjct: 608 AHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLY 662
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T + ++G+ LGNV + + + AG S++ TY SLI G + ++ D+ +
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDR-VKSFLKFLLGGGWKINENMAQKLVKCYC 295
+ M + G + + ++ G C R++D +K F + W ++ C
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTV-IIFALC 320
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+LGR E + +T+ + P V H ++ +I DD + + M ++GL
Sbjct: 321 QLGRKTEALNMFKEMTEKHCQPNV--HTYTVLICSLCEDSNFDDAKKILNGMLEKGL 375
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +NV A +F SM +G + + +LI + V AL LF M
Sbjct: 242 YTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMH 301
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P +TY I LG + NV TY LI + +F
Sbjct: 302 EDNCW-PTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNF 360
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + M+ G+IPS+ +++G C + L + N +L
Sbjct: 361 DDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNEL 420
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C + + L + + P V+ +
Sbjct: 421 ILGFCRGKNIHKAMSLLHKMLERKLQPNVVTY 452
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 122/362 (33%), Gaps = 72/362 (19%)
Query: 87 KKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
K+A+L++ D M+K + E D Y LI K A +F M + G PD +
Sbjct: 571 KEARLLV----DIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFI 626
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+ + I A CS + + ++++ P++ Y FI + G++D
Sbjct: 627 YTAFIHA-YCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRM 685
Query: 206 IAAGFSVNVQTYESLIHGSLKAR-----------------------------DFDSVDRF 236
G + TY LI A+ D++
Sbjct: 686 HEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDL 745
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M G P+ K + GLC L+ + G NE++ L+ C C+
Sbjct: 746 FGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQ 805
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
LG E L+ + + P H S + L L D +D
Sbjct: 806 LGLYGEAIRWLDIMIENRHLP----HLDSCKLLLCGLYDEGND----------------- 844
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
E + V CS+ +C Y + L+ G + GLS K +
Sbjct: 845 -EKAKRVFCSFLQC---------------EYNYDEMVWKVLIDGLLKKGLSDKCSDLFGI 888
Query: 417 MK 418
M+
Sbjct: 889 ME 890
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 5/226 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++F M + +P+ + LIC+ + A + M+ + P+ TY+A I
Sbjct: 328 ALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLE-KGLIPSVVTYNALI 386
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G + + + + S N +TY LI G + ++ +M+ +
Sbjct: 387 DGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQ 446
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ G C L L + G +E + C+ G V+E
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSL 506
Query: 307 LETLT-KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
E+L K ++ EV+ +S +I Y ++ D + + +M G
Sbjct: 507 FESLKEKGIKANEVI---YSTLIDGYCKVGKVSDGRFLLDKMLSAG 549
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 4/218 (1%)
Query: 104 NESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
N+ CL Y LI + + V A+ +F+ M P + +I A G
Sbjct: 267 NKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKT 326
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
AL++F+ M + + +PN TY I N D K + G +V TY +L
Sbjct: 327 EALNMFKEM-TEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNAL 385
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I G K S M S P+ +++ G C + + + S L +L
Sbjct: 386 IDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ N L+ C+ G + + L + + P+
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPD 483
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 124/319 (38%), Gaps = 40/319 (12%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S ++ L+TS+ + L L ++D G + A +I + V FA
Sbjct: 69 STVDFNRLLTSIAKTKHHSTLLSLSRQMDSF--GIPPDVYTLAIVINSLCHLNRVDFAFS 126
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ G +PD+ F +LI G + AL LF+ M+ E ++PN TY I+G
Sbjct: 127 ALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI-GEGFQPNVVTYGTLINGL 185
Query: 190 SSLGN--------------------------VDAMNK---------WYAANIAAGFSVNV 214
+GN +D++ K ++ I G S N+
Sbjct: 186 CKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLIHG K ++ V EM+ I+P + L V++ LC + +
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + N L+ +C VD + +T+ + V+ ++ +I Y
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVI--SYNTLINGYCKI 363
Query: 335 DRLDDVEYSVGRMGKQGLS 353
+D Y M +Q L+
Sbjct: 364 QSVDKAMYLFEEMSRQELT 382
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M +G++P+ +N+L+ +V A+ +F+ MV ++ N +Y+ I
Sbjct: 299 AHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH-KDCVANVISYNTLI 357
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +VD + + N TY +LIHG + EM++ G I
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI 417
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + + LC R LD+ + LK + G W + + ++ C G +++ +
Sbjct: 418 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 307 LETLTKCNQSPEV 319
L+ P V
Sbjct: 478 FSNLSSKGLQPNV 490
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 6/215 (2%)
Query: 129 HVFTSMEA---QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD N+++ A G V A + ++M+ +PN TY+A
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNAL 321
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G VD K + + NV +Y +LI+G K + D +EEM +
Sbjct: 322 MDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+ ++ GLC +L S ++ G + + L C+ +D+
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
L+ + N P++ ++ G+ R L D D
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q+V AM++F M Q + P++ +N+LI G + A+SLF MV
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY ++D A + + ++Q Y +++ G +A +
Sbjct: 413 ARGQI-PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 471
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + + S G+ P++ ++ GLC +
Sbjct: 472 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 2/222 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D M+ +G E + Y L+ V A+ VF +M + + +N+LI
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V A+ LFE M S +E PN+ TY+ I G +G + + +A G ++
Sbjct: 363 IQSVDKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLV 421
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L K R D + + P I I +L+G+C +L+ + L
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 481
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G + N ++ C+ G + E + + K SP
Sbjct: 482 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSP 523
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 5/247 (2%)
Query: 95 WRLDKMLKGNESCLDEYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+RL ++++G+ D+Y LI K A +F S+E +GIKP++ FNSLI
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
SG A E MVS+ P++ TY +FI + + +
Sbjct: 296 LCKSGKADIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 354
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ Y +IH LK R++ V R + EM+S G P + + C +L+ ++ L
Sbjct: 355 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 414
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRL 330
+ G ++ L+ + +G+ D L+ +T P +F ++R+
Sbjct: 415 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 474
Query: 331 YALSDRL 337
+ D L
Sbjct: 475 RLVEDVL 481
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 14/242 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV AM + M A G+ PD+ +N LI G + +A L +M + +
Sbjct: 195 GKVHK---AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIAD 250
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+A I+ G D + + G N T+ SLI+G K+ D +F E
Sbjct: 251 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 310
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK---INENMA-QKLVKCY 294
+M+S G P +E LC + SF+ +L K +N + KL+K
Sbjct: 311 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKER 370
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G V ++ + + CN P+V+ + S +R Y + RL++ E + M K G++
Sbjct: 371 -NYGLVARTWGEMVS-SGCN--PDVVTYTTS--MRAYCIEGRLNEAENVLMEMSKNGVTV 424
Query: 355 KS 356
+
Sbjct: 425 DT 426
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA+ E + KG C+ +I K + A+ V M+ +G KP+ +
Sbjct: 125 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 184
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+L+ G V A++L M + P++ TY+ I G G++++ +
Sbjct: 185 NALVQGFCNEGKVHKAMTLLNKMRAC-GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 243
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + TY +LI+ K D ++ + + GI P+ ++ GLC K D
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303
Query: 267 RVKSFLKFLLGGG 279
FL+ ++ G
Sbjct: 304 IAWKFLEKMVSAG 316
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 6/165 (3%)
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
++P++ T+++ I G+ VD + GF+ +V +Y +LI G +A D
Sbjct: 6 WRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAV 65
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ EM P + + +++GLC + + L+ + GW+ + +V
Sbjct: 66 ELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFR 121
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C + E EE L+ + + +P V+ + +I Y R+ D
Sbjct: 122 CRERKAKEAEEMLQEMFEKGLAPCVVT--CTAVINAYCKEGRMSD 164
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 78/209 (37%), Gaps = 5/209 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI + V A +F M +G D + +LI +G + A+ LF E
Sbjct: 16 LIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELF-----GE 70
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P+ Y A + G + + G+ + + Y +++ + R
Sbjct: 71 MDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEA 130
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ +EM G+ P + V+ C ++ L+ + G K N LV+
Sbjct: 131 EEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQG 190
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLH 322
+C G+V + L + C +P+ + +
Sbjct: 191 FCNEGKVHKAMTLLNKMRACGVNPDAVTY 219
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ LF++M E+ PNS TY + + GFS G + + S+N Y
Sbjct: 493 ELTDVFGLFDVM-KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIY 551
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+L+ K++ + M+ G IP + + +L GL + D+ K + +
Sbjct: 552 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAK---EIFMN 608
Query: 278 GGWK 281
WK
Sbjct: 609 SRWK 612
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 168/374 (44%), Gaps = 18/374 (4%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
VS+ + L +++ F + + +LIT+ ++ + L + ++ ++ G E L Y
Sbjct: 160 VSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEV--GCEPTLITY 217
Query: 112 ACLIALSGKVQNVPFA--MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++ + GK+ +P+A + + M+ G+ PD +N+LI C AL LFE
Sbjct: 218 NAILNVYGKM-GMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFE-E 275
Query: 170 VSSEEYKPNSKTYDAFISGFS-SLGNVDAMN--KWYAANIAAGFSVNVQTYESLIHGSLK 226
+ ++P++ TY+A + + S +AM K +N F +V TY SL+ ++
Sbjct: 276 IKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESN---SFRPSVVTYNSLVSAYVR 332
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ +M+ GI P + +L G K + + + G K N
Sbjct: 333 GGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICT 392
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+K Y + G+ +E+ + + + C SP+++ ++ ++ ++ + +V
Sbjct: 393 FNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVT--WNTLLAVFGQNGMDSEVSGVFEE 450
Query: 347 MGKQGLSFKSAEDV-EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
M + F D +I +Y RC ++D+ + + ++ +TY+ ++A R
Sbjct: 451 MKRS--RFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARG 508
Query: 405 GLSGKLDSVINEMK 418
GL + + V+ EMK
Sbjct: 509 GLWEQSEKVLAEMK 522
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 106/284 (37%), Gaps = 82/284 (28%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKMLKGNESCLDEYACLIALSGKVQ-- 122
+F S ++++L+++ + LVL+ ++ DK +K D Y LSG V
Sbjct: 315 SFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKP-----DVYTYTTLLSGFVNAG 369
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLIC-------------------ACLCSGDVVTAL 163
AM VF M G KP+ FN+LI C CS D+VT
Sbjct: 370 KEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWN 429
Query: 164 SL----------------FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+L FE M S + P T++ IS + G+ D Y +
Sbjct: 430 TLLAVFGQNGMDSEVSGVFEEMKRSR-FAPERDTFNTLISAYGRCGSFDQAMAAYKRMLE 488
Query: 208 AGFSVNVQTYE-----------------------------------SLIHGSLKARDFDS 232
AG S ++ TY SL+H R+ +
Sbjct: 489 AGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVER 548
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL--DRVKSFLKF 274
++ EE+ S G I + +L K L + ++ L + ++FL+F
Sbjct: 549 MNALAEEIYS-GTIKTHAVLLKTLVLVNSKVDLLVETERAFLEF 591
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 1/189 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L+ ++ KV + F +GI PD N+++ V A + M S
Sbjct: 571 LVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESG 630
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ +Y++ + +S N + + + G +V +Y +I+ + D
Sbjct: 631 -LTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEA 689
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R EEM +P + + A +++++ G K N N +V
Sbjct: 690 KRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDW 749
Query: 294 YCELGRVDE 302
YC+L DE
Sbjct: 750 YCKLKLRDE 758
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G+ PD + S+I GD+ A LF+ MVSS KPN T++ I GF +G
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG-IKPNDFTFNVLIDGFGKVG 334
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ + Y + G +V T+ SLI G + + + + +EEM + P++
Sbjct: 335 NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYA 394
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ LC ++ ++FL+ L + ++ +C+ G+VDE
Sbjct: 395 VLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDE 443
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 1/221 (0%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D ++KG + Y +I+ K+ ++ A +F M + GIKP+ FN LI G
Sbjct: 275 DMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVG 334
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ +A+ ++E M+ P+ T+ + I G+ G V+ K + S NV TY
Sbjct: 335 NMRSAMVMYEKMLLLGCL-PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
LI+ K F + S ++P I V++G C K+D + +
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ ++ L+ C GR+ E + + N P+
Sbjct: 454 KKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPD 494
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/294 (18%), Positives = 120/294 (40%), Gaps = 6/294 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + GIK V+N+L+ + V A+ LF + + P+ +++ I
Sbjct: 163 AKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY-FVPDVYSFNILI 221
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYEEMMSLGI 245
G +G +D +++ G ++ +Y +LI+G + + D E+M+ G+
Sbjct: 222 RGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGV 281
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++ G C + ++ G K N+ L+ + ++G +
Sbjct: 282 SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMV 341
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
E + P+V+ F+ +I Y ++ M + LS + ++I
Sbjct: 342 MYEKMLLLGCLPDVVT--FTSLIDGYCREGEVNQGLKLWEEMKVRNLS-PNVYTYAVLIN 398
Query: 366 SYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + FL H+K S + + Y+ ++ G+ +AG + + ++ EM+
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQ 452
>gi|297844018|ref|XP_002889890.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335732|gb|EFH66149.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 6/295 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDA 184
A+ VF M GI P+ FN +I +GD+ AL L M +S PN+ TY++
Sbjct: 237 ALSVFYRMLKCGIWPNVVSFNMMIDGACKTGDMRFALQLLGKMGVMSGNFVSPNAVTYNS 296
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+GF G +D + + G N +TY +L+ +A D R +EM S G
Sbjct: 297 VINGFCKAGRLDLAERIRGEMVKLGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKG 356
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ + I ++ L + L+ ++ +I+ +V+ C G V E
Sbjct: 357 LVANTVIYNSIVYWLFMEGDTEGAMMVLRDMVRKRMQIDGFTRAIVVRGLCRNGYVAEAV 416
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
E +++ +++ H + ++ + +L V+ +G M GL + +I
Sbjct: 417 EFHRQISEKKLVEDIVCH--NTLMHHFVRDKKLVCVDQILGSMLVHGLGLDTIL-FGTLI 473
Query: 365 CSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y + +R +D++ IK + Y+ +V G + G++G ++V+N M+
Sbjct: 474 DGYLKEGKLERAIDIYDGMIKMNKTPNLVIYNSIVNGLSKRGMAGAAEAVVNAME 528
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 23/289 (7%)
Query: 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
S S +NPLISR+L+ S K L+ + N++ A + +S L+++W
Sbjct: 52 SSSLTNPLISRVLRQFRSSPKLALEFYNWVLENNTV----AKSENRFEASCVMIHLLVDW 107
Query: 96 RLDKMLKGNESCLDEYACLIALSG-KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
R + L L+++ G K+ + + S +A G D VF+SL+ AC
Sbjct: 108 RR------FDDALSIMVNLMSVEGEKLSPLHVLSGLIRSYQACGSSLD--VFDSLVRACT 159
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+GD A + E +E + + + F+ +L +D Y + G+ NV
Sbjct: 160 QNGDAQGAYEVIE-QTRTEGFWVSVHALNNFMGCLLNLNEIDWFWMVYKEMDSLGYVENV 218
Query: 215 QTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL- 272
T+ +I+ K F+++ FY M+ GI P++ +++G C + L
Sbjct: 219 NTFNLVIYSFCKENKLFEALSVFYR-MLKCGIWPNVVSFNMMIDGACKTGDMRFALQLLG 277
Query: 273 KFLLGGGWKINENMA--QKLVKCYCELGRVDELE----EQLETLTKCNQ 315
K + G ++ N ++ +C+ GR+D E E ++ CN+
Sbjct: 278 KMGVMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGEMVKLGVDCNE 326
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ SM G+ D+ +F +LI L G + A+ +++ M+ + PN Y++ ++G
Sbjct: 452 QILGSMLVHGLGLDTILFGTLIDGYLKEGKLERAIDIYDGMIKMNK-TPNLVIYNSIVNG 510
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
S G A A + A S + TY +L++GSLK + + D M S
Sbjct: 511 LSKRGMAGAAE----AVVNAMESKDTVTYNTLLNGSLKIGNVEEADNILSRMQKQDGEKS 566
Query: 249 IPIL--EKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ ++ ++ LC ++ K LK ++ G
Sbjct: 567 VSLVTYNILINHLCKFGCYEKAKEVLKIMVERG 599
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G+ PD + S+I GD+ A LF+ MVSS KPN T++ I GF +G
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG-IKPNDFTFNVLIDGFGKVG 334
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ + Y + G +V T+ SLI G + + + + +EEM + P++
Sbjct: 335 NMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYA 394
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ LC ++ ++FL+ L + ++ +C+ G+VDE
Sbjct: 395 VLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDE 443
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 1/221 (0%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D ++KG + Y +I+ K+ ++ A +F M + GIKP+ FN LI G
Sbjct: 275 DMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVG 334
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ +A+ ++E M+ P+ T+ + I G+ G V+ K + S NV TY
Sbjct: 335 NMRSAMVMYEKMLLLGCL-PDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
LI+ K F + S ++P I V++G C K+D + +
Sbjct: 394 AVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQE 453
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ ++ L+ C GR+ E + + N P+
Sbjct: 454 KKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPD 494
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/294 (18%), Positives = 120/294 (40%), Gaps = 6/294 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + GIK V+N+L+ + V A+ LF + + P+ +++ I
Sbjct: 163 AKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY-FVPDVYSFNILI 221
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYEEMMSLGI 245
G +G +D +++ G ++ +Y +LI+G + + D E+M+ G+
Sbjct: 222 RGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGV 281
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++ G C + ++ G K N+ L+ + ++G +
Sbjct: 282 SPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMV 341
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
E + P+V+ F+ +I Y ++ M + LS + ++I
Sbjct: 342 MYEKMLLLGCLPDVVT--FTSLIDGYCREGEVNQGLKLWEEMKVRNLS-PNVYTYAVLIN 398
Query: 366 SYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + FL H+K S + + Y+ ++ G+ +AG + + ++ EM+
Sbjct: 399 ALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQ 452
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ GK A+ VF++M+ G PD+ V+N LI G V AL L E M
Sbjct: 120 YSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM- 178
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ +TY+ I SS G + ++ S +V TY +L++G K R
Sbjct: 179 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 238
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D ++EM + +P + +++ L +++ L+ G N + L
Sbjct: 239 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNAL 298
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C G+VD+ E + + +C+ P+ + +
Sbjct: 299 ISGFCRSGQVDKGYELFQDMIECSCFPDSITY 330
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 67/178 (37%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD +N+LI +GD AL +F + KPN+ ++D + +
Sbjct: 9 PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + AG +V +LIH + + R M + + + +++ L
Sbjct: 69 VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ + + G + + L+ C + G+VDE E LE + + P+
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 115/300 (38%), Gaps = 7/300 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPN 178
K+ A+ VF M G++ D V N+LI C C G + A L M ++ + +
Sbjct: 59 KMSRATDALAVFQEMLGAGLQADVNVCNTLI-HCTCRLGMLRQARRLLHHM-TAHAFVLD 116
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY + G + ++ AG + Y LI K D E
Sbjct: 117 VFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLE 176
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M GI+P V++ L + + ++ SF + + L+ +L
Sbjct: 177 DMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLR 236
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R DE + + + P+ L F +I A + R++D R+ K G ++
Sbjct: 237 RTDEACDLFDEMQANKCMPD--LTTFGTLIDTLAKAGRMEDALEQSARLVKMG-HVPNSY 293
Query: 359 DVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + R D+ +LF D I+ S TY LV G+ R G + ++ EM
Sbjct: 294 IYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM 353
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L + LI K + A+ + G P+S ++N+LI SG V LF+
Sbjct: 257 LTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQ 316
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+S TY + GFS G+ + + G + + TY LI A
Sbjct: 317 DMIECSCF-PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMA 375
Query: 228 RDFDSVDRFYEEMMSLGIIPSI 249
+ ++EM++ G P +
Sbjct: 376 GQVEDAYTLFKEMIAKGFNPDM 397
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI +L + + L RL KM S + Y LI+ + V +F
Sbjct: 259 TFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYI--YNALISGFCRSGQVDKGYELFQ 316
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M PDS + L+ G A+ L + MV E + P TY+ I S
Sbjct: 317 DMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVR-EGHTPALATYNVLIRSLSMA 375
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESL 220
G V+ + IA GF+ ++QTY +L
Sbjct: 376 GQVEDAYTLFKEMIAKGFNPDMQTYSAL 403
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 131/333 (39%), Gaps = 59/333 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +V M ++G PDS+ ++ +I + V A LF+ M P+ TY +
Sbjct: 106 AYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEM-KRNGITPDVYTYTTLL 164
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F +G ++ W+ G + NV TY +LIH LK R + +E M+S G +
Sbjct: 165 DRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCV 224
Query: 247 PSIPILEKVLEGLC------------ARRKLDRV-------------------------- 268
P+I +++G C AR K D+V
Sbjct: 225 PNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGA 284
Query: 269 --------------KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+ L+ + G + N+ + L+ +C++G++DE +E +
Sbjct: 285 LVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHG 344
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAA 372
SP V + +S +I RLD + +M + + EMV +C +
Sbjct: 345 CSPNV--YTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDE 402
Query: 373 YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
RL L ++ KG Y TY ++ G+ +AG
Sbjct: 403 AYRLMLMMEE-KGCYP-NVVTYTAMIDGFGKAG 433
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 6/228 (2%)
Query: 97 LDKMLKGNESCLDEYACLI--ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+D K E+ E AC I + ++P F ++++ +P+ + +L+
Sbjct: 234 IDGHCKAGET---EKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLC 290
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ V A L E M S E +PN YDA I GF +G +D + + + G S NV
Sbjct: 291 KAHKVKEARDLLETM-SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNV 349
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI K + D + +M+ P++ I ++++GLC K D +
Sbjct: 350 YTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLM 409
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N ++ + + GRVD E L+ +T +P + +
Sbjct: 410 MEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITY 457
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 8/259 (3%)
Query: 4 ACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQV-PVSQIKTTLDSV 62
AC++ + K+ + + + + ++ +V + L+ L + V + + L+++
Sbjct: 246 ACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM 305
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGK 120
+ +Q +DALI + +AQ V KML G + Y+ LI K
Sbjct: 306 SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFT----KMLGHGCSPNVYTYSSLIDKLFK 361
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+ + A+ V T M P+ ++ ++ G A L +M+ + PN
Sbjct: 362 DKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLM-LMMEEKGCYPNVV 420
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY A I GF G VD + + G + N TY LI+ A D + EEM
Sbjct: 421 TYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480
Query: 241 MSLGIIPSIPILEKVLEGL 259
I + KV+EG
Sbjct: 481 KQTYWPKHIGMYRKVIEGF 499
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 9/210 (4%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G P +FNSL+ A SGD A L + MV Y+P Y+ I G S
Sbjct: 2 MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVIC-GYQPGYVVYNILIGGICSTE 60
Query: 194 NVDAM------NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
++ +M + Y + G +N + F+ EMMS G IP
Sbjct: 61 DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP 120
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
KV+ LC K+++ + + G + L+ +C++G +++
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
+ + + +P V+ ++ +I Y + +L
Sbjct: 181 DEMQQDGCAPNVVT--YTALIHAYLKTRKL 208
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A + +M +G +P+ ++++LI G + A +F M+
Sbjct: 282 YGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKML 341
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + I +D K + + NV Y ++ G K
Sbjct: 342 G-HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKT 400
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R M G P++ +++G ++DR L+ + G N + L
Sbjct: 401 DEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVL 460
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ C G +D+ + LE + +
Sbjct: 461 INHCCAAGLLDDAHKLLEEMKQ 482
>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 553
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 6/220 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L++ GK + A+ VF M G++P +N L+ A SG V A ++F+ M
Sbjct: 313 YALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSM- 371
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ +Y +S + + +++ K++ I F NV TY +LI G K D
Sbjct: 372 RRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIKGYAKINDL 431
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ V + YEEM+ GI + IL +++ D + K + G + QK
Sbjct: 432 EMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPD----QKA 487
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
L + DE E+ L + S L +GI++L
Sbjct: 488 KNVLLSLPKTDEEREEANELV-GHFSENNSLSKVNGIVKL 526
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 13/219 (5%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
++A V E LD ++ + ++SG V+ A VF SM PD +
Sbjct: 327 EEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQ---AQTVFKSMRRDRYFPDLCSY 383
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
+++ A + + D+ A F+ ++ ++++PN TY I G++ + +++ + K Y +
Sbjct: 384 TTMLSAYVNADDMEGAEKFFKRLIQ-DDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEML 442
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G N +++ K+ DFDS +++EM S GI P +K L + K D
Sbjct: 443 VRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPD----QKAKNVLLSLPKTD 498
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ L+G +EN + V +L VDE EE
Sbjct: 499 EEREEANELVG---HFSENNSLSKVNGIVKL--VDEDEE 532
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 9/284 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRL-DKM-LKGNESCLDEYACLIALSGKVQNVPFAMH 129
F+++ LI L K AQL + L D+M +G + Y LI V AM
Sbjct: 127 FTYNILINGLC----KDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMD 182
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA-LSLFEIMVSSEEYKPNSKTYDAFISG 188
+ ME +GI P++ + +LI G+V A L L E+ + E PN TY I G
Sbjct: 183 ILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHG 242
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G + ++ I +G N TY +LIHG + F EM+++G
Sbjct: 243 LCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELD 302
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I +++GLC +LD + ++ G + L++ C+ G +DE ++
Sbjct: 303 VVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQ 362
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P + ++ +I + +DR D V M GL
Sbjct: 363 EMRAKGIVPNSVT--YTTLINGFTQADRTDHALQLVNEMKSNGL 404
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 5/240 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV--FTSMEAQGIKPDSA 144
KK Q+ + + ++ S D + I ++G ++ M V M+A+G P
Sbjct: 103 KKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVV 162
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+ +LI +G V A+ + + M PN+ TY A I G G V+
Sbjct: 163 TYTTLIHGFCTAGRVDAAMDILDEM-EHRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221
Query: 205 NIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
G NV TY LIHG + F+ F +EM+ G P+ ++ GLC +
Sbjct: 222 MKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQK 281
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L ++ G +++ + L+ C++G +D E + + +P+V +
Sbjct: 282 GSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTY 341
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 85/227 (37%), Gaps = 40/227 (17%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD ++ + ++ ALI L ++A LVL+ + L+GNE C + +
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLK---EMKLRGNECCPNVVTYTQLI 240
Query: 118 SGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLI-------------------CACLCS 156
G Q F M M G P++A + +LI A C
Sbjct: 241 HGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCE 300
Query: 157 GDVVTALSLF---------------EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
DVV SL +I++ + P+ TY + I G G +D
Sbjct: 301 LDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGL 360
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
A G N TY +LI+G +A D + EM S G++P+
Sbjct: 361 MQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPA 407
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 23/268 (8%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K QL+ E M KG Y+ +I V A +F M+ G+ PD +
Sbjct: 440 KAFQLIKEM----MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI + +G + A LFE M S P TY A I + V N + +
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 554
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG----------------IIPSIP 250
AG N TY +L+ G KA + Y +++ + P++
Sbjct: 555 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 614
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC K+D L +L G + N + L+ +C+ G++D +E +
Sbjct: 615 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 674
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLD 338
TKC P V H ++ +I RLD
Sbjct: 675 TKCGYLPSV--HTYTSLIDRMFKDGRLD 700
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 16/245 (6%)
Query: 94 EWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+W ++M G + Y LI K + VP A +F M G +P+ + +L+
Sbjct: 512 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 571
Query: 153 CLCSGDVVTALSLFEIMVSSEE---------------YKPNSKTYDAFISGFSSLGNVDA 197
+G++ A ++ ++ + + PN TY A + G VD
Sbjct: 572 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 631
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ A +++G N Y++LI G KA DS + +M G +PS+ +++
Sbjct: 632 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLID 691
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ +LD L +L N ++ C +G ++ + L + + SP
Sbjct: 692 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 751
Query: 318 EVLLH 322
V+ +
Sbjct: 752 NVVTY 756
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 17/226 (7%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG K + + + + M +G P+ ++FNSL+ + D A L M +
Sbjct: 318 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 376
Query: 175 YKPNSKTYDAFIS---GFSSLGNVDAMN---KWYAANIAAGF---SVNVQTYESLIHGSL 225
P Y+ FI G L + D ++ K Y +AA VNV + + G
Sbjct: 377 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 436
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K FD + +EMM G +P KV+ LC K+++ + + G +
Sbjct: 437 K---FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 493
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L+ +C+ G +++ + E + SP V+ ++ +I Y
Sbjct: 494 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT--YTALIHAY 537
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A + +M + G +P+ V+++LI +G + +A +F + +
Sbjct: 616 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF-LQM 674
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y P+ TY + I G +D K + + + NV TY ++I G + +
Sbjct: 675 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 734
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + M G P++ +++GL
Sbjct: 735 EKALKLLSLMEEKGCSPNVVTYTALIDGL 763
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 33/187 (17%)
Query: 175 YKPNSKTYDAFISGFSSLGNVD--------------AMNKWYAANIAAG----------- 209
Y+P+ TY+A + SS G VD M+++ A
Sbjct: 205 YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 264
Query: 210 -------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
F ++ +I G ++A FD F M IP++ +L G +
Sbjct: 265 DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 324
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLL 321
++L K + ++ G N ++ LV YC + L +T C P V+
Sbjct: 325 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 384
Query: 322 HFFSGII 328
+ F G I
Sbjct: 385 NIFIGSI 391
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 14/272 (5%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA--MH 129
++++ ++SL + K A+ + ++ KG+ L Y+ L L G FA +
Sbjct: 371 TFNSFMSSLCKHGRSKDAEEIFQY---MTTKGHMPDLVSYSIL--LHGYATEGRFADMNN 425
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F SM +GI + FN LI A G + A+ +F M + +P+ TY IS F
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEM-QGQGVRPDVVTYSTLISAF 484
Query: 190 SSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-P 247
+G + DAM K ++ I+ G N Y SLIHG D EMMS GI P
Sbjct: 485 CRMGRLADAMEK-FSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRP 543
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+I ++ LC ++ ++ G + L+ YC +G++++ L
Sbjct: 544 NIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + P+V+ ++ ++ Y S ++DD
Sbjct: 604 DAMVSVGIEPDVVT--YNTLVSGYCKSGKIDD 633
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)
Query: 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
S +D Y CL+ GK++ A V +M + GI+PD +N+L+ SG + L L
Sbjct: 585 SLIDGY-CLV---GKMEK---AFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F M+ ++ KP + TY + G G A K + I +G +V++ TY+ L+ G
Sbjct: 638 FREMLH-KKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLC 696
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ D + ++ ++ I IL V+ L R+ + + G N +
Sbjct: 697 RNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVS 756
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
++ + G V+E + ++ K +P L + IIR+
Sbjct: 757 TYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRL--LNDIIRM 799
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 127/320 (39%), Gaps = 10/320 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y ++ K + + A V M +G++PD + ++I CSG
Sbjct: 293 KGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKE 352
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ +F M +S+ P T+++F+S G + + G ++ +Y L+
Sbjct: 353 SAKMFRKM-TSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILL 411
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG F ++ + M GI+ + ++ R +D + G G +
Sbjct: 412 HGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVR 471
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ L+ +C +GR+ + E+ + P ++ + +I + + L +
Sbjct: 472 PDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVV--YHSLIHGFCMHGDLVKAK 529
Query: 342 YSVGRMGKQGLSFKSAEDVEMVI---CSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFL 397
V M +G+ + +I C+ R A+D +L + HI + T++ L
Sbjct: 530 ELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVI-HIGDRPTI--VTFNSL 586
Query: 398 VAGYRRAGLSGKLDSVINEM 417
+ GY G K V++ M
Sbjct: 587 IDGYCLVGKMEKAFGVLDAM 606
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 2/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + + M ++GI + VF S I LC+ G V+ A +F +++ + +P T+++
Sbjct: 528 AKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD-RPTIVTFNSL 586
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G+ +G ++ A ++ G +V TY +L+ G K+ D + EM+ +
Sbjct: 587 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKV 646
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+ VL+GL + K ++ G ++ + + L+K C DE
Sbjct: 647 KPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDE 703
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 118/308 (38%), Gaps = 14/308 (4%)
Query: 54 QIKTTLDSVDIFAFNSSQF-------SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNES 106
K T ++VD+ S S++ +I SL S + L + R+ K +G
Sbjct: 203 HAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAK--EGGRC 260
Query: 107 CLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
D + + G K V A ++ M +G++PD +NS++ A LC +
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDA-LCKARAMDKAE 319
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
L + + +P+ TY A I G+S G+ K + + G + T+ S +
Sbjct: 320 LVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSL 379
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K + ++ M + G +P + +L G + + + + G N
Sbjct: 380 CKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANC 439
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
+ L+ + + G +DE + P+V+ +S +I + RL D
Sbjct: 440 HCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT--YSTLISAFCRMGRLADAMEKF 497
Query: 345 GRMGKQGL 352
+M GL
Sbjct: 498 SQMISIGL 505
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 109/279 (39%), Gaps = 15/279 (5%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV-SSEEYKPNSKTYDAFISGFSSL 192
M G P++ +N++I + AL + + M P+ +++ I GF
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G V + G +V TY S++ KAR D + +M+ G+ P
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTY 337
Query: 253 EKVLEGL-CARRKLDRVKSFLKF----LLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ G C+ + K F K L+ G N M+ C+ GR + EE
Sbjct: 338 TAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSS-----LCKHGRSKDAEEIF 392
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+ +T P+++ +S ++ YA R D+ M +G+ + ++I ++
Sbjct: 393 QYMTTKGHMPDLV--SYSILLHGYATEGRFADMNNLFHSMADKGI-VANCHCFNILISAH 449
Query: 368 FRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAG 405
+ D L ++G + TY L++ + R G
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMG 488
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 26/289 (8%)
Query: 37 VSSSNPLISRLLQ-------VPVSQIKTTLDSVDIFAFNSSQ---------FSWDALITS 80
V+ +P S+L Q + +I +LDS + + SQ DA+I
Sbjct: 91 VNPRSPRASKLRQHSYDARYASLVKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVL 150
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++P+ A L + ++ E L Y + + K +N+ A +F M +G+K
Sbjct: 151 NNMTNPETALLAFGFFRKRLKPSREVIL--YNVTLKVFRKCRNLDXAEKLFDEMLERGVK 208
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAM 198
PD+ F+++I S A+ FE M E+ P+ TY A I + GNVD
Sbjct: 209 PDNITFSTIISCARVSSLPNKAVEWFEKM---PEFGCHPDDVTYSAMIDAYGRAGNVDMA 265
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
K Y + ++ T+ +LI + +FD YEEM +LG+ P++ I +L+
Sbjct: 266 LKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDA 325
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ ++ + K+ K + G +++ L++ Y GR E+ L
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAY---GRARYAEDAL 371
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ G+ + A+ V+ M+ +G++ ++N+L+ C G A ++FE M
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+S T+ + I+ +S G V A + AGF N+ SLI KA
Sbjct: 414 SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRT 473
Query: 231 DSVDRFYEEMMSLGIIP 247
D V R ++ ++ L I P
Sbjct: 474 DEVVRTFDRLLELDITP 490
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 54/279 (19%)
Query: 83 SSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
SS P KA +EW +KM + G Y+ +I G+ NV A+ ++ + +
Sbjct: 224 SSLPNKA---VEW-FEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRI 279
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D F++LI SG+ L+++E M + KPN Y+ + A W
Sbjct: 280 DPVTFSTLIRIYGMSGNFDGCLNVYEEM-KALGVKPNLVIYNTLLDAMGR-----AKRPW 333
Query: 202 YAANIAA-----GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A NI G ++ TY +L+ +AR + Y+EM G+ S+ +L L
Sbjct: 334 QAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSV-VLYNTL 392
Query: 257 EGLCA-------------------------------------RRKLDRVKSFLKFLLGGG 279
+CA K+ ++ L +L G
Sbjct: 393 LAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAG 452
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ N + L++CY + R DE+ + L + + +P+
Sbjct: 453 FEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPD 491
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 5/247 (2%)
Query: 95 WRLDKMLKGNESCLDEYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+RL ++++G+ D+Y LI K A +F S+E +GIKP++ FNSLI
Sbjct: 414 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
SG A E MVS+ P++ TY +FI + + +
Sbjct: 474 LCKSGKADIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP 532
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ Y +IH LK R++ V R + EM+S G P + + C +L+ ++ L
Sbjct: 533 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVL 592
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRL 330
+ G ++ L+ + +G+ D L+ +T P +F ++R+
Sbjct: 593 MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRM 652
Query: 331 YALSDRL 337
+ D L
Sbjct: 653 RLVEDVL 659
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 14/242 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV AM + M A G+ PD+ +N LI G + +A L +M + +
Sbjct: 373 GKVHK---AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIAD 428
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+A I+ G D + + G N T+ SLI+G K+ D +F E
Sbjct: 429 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 488
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK---INENMA-QKLVKCY 294
+M+S G P +E LC + SF+ +L K +N + KL+K
Sbjct: 489 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKER 548
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G V ++ + + CN P+V+ + S +R Y + RL++ E + M K G++
Sbjct: 549 -NYGLVARTWGEMVS-SGCN--PDVVTYTTS--MRAYCIEGRLNEAENVLMEMSKNGVTV 602
Query: 355 KS 356
+
Sbjct: 603 DT 604
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 1/211 (0%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+KA+ E + KG C+ +I K + A+ V M+ +G KP+ +
Sbjct: 303 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 362
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+L+ G V A++L M + P++ TY+ I G G++++ +
Sbjct: 363 NALVQGFCNEGKVHKAMTLLNKMRAC-GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 421
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + TY +LI+ K D ++ + + GI P+ ++ GLC K D
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
FL+ ++ G + ++ C++
Sbjct: 482 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 512
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 47/311 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIK-PDSAVFNSLICACLCSGDVVTALSLFEIM 169
+A L+A + P A+ +F M P + +N++I + D+ AL +M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V S ++P++ T+++ I G+ VD + GF+ +V +Y +LI
Sbjct: 180 VRSG-WRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLI-------- 230
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
EGLC ++D L G + + +M
Sbjct: 231 ---------------------------EGLCEAGRIDEAVE----LFGEMDQPDMHMYAA 259
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LVK C R +E L + + P ++ ++ + + E + M +
Sbjct: 260 LVKGLCNAERGEEGLLMLRRMKELGWRPST--RAYAAVVDFRCRERKAKEAEEMLQEMFE 317
Query: 350 QGLS--FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+GL+ + V C R + R+ L L ++G K TY+ LV G+ G
Sbjct: 318 KGLAPCVVTCTAVINAYCKEGRMSDALRV-LELMKLRGC-KPNVWTYNALVQGFCNEGKV 375
Query: 408 GKLDSVINEMK 418
K +++N+M+
Sbjct: 376 HKAMTLLNKMR 386
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 32/227 (14%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M G +PD+ FNSLI + V A LF+ M + + +Y I
Sbjct: 172 ALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM-PLRGFAQDVVSYATLI 230
Query: 187 SGFSSLGNVDA-------MNK----WYAANIAA--------------------GFSVNVQ 215
G G +D M++ YAA + G+ + +
Sbjct: 231 EGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTR 290
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y +++ + R + +EM G+ P + V+ C ++ L+ +
Sbjct: 291 AYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELM 350
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G K N LV+ +C G+V + L + C +P+ + +
Sbjct: 351 KLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 397
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ LF++M E+ PNS TY + + GFS G + + S+N Y
Sbjct: 671 ELTDVFGLFDVM-KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIY 729
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+L+ K++ + M+ G IP + + +L GL + D+ K + +
Sbjct: 730 TALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAK---EIFMN 786
Query: 278 GGWK---INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
WK +E + + ++ + G D E + L + N P
Sbjct: 787 SRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRP 829
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/354 (20%), Positives = 144/354 (40%), Gaps = 8/354 (2%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
F+ Q S+ LI L S +A L L +++ +L + Y +I K + V
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVI-MYTAIIDSFCKDKLVID 212
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +++ M + I P+ FNSLI G + A+ L M S PN T++ I
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEM-SLNNVNPNVYTFNILI 271
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V + I G NV TY SL+ G ++ + + + G+
Sbjct: 272 DGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVT 331
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ GLC + +D K + N L+ C+ GR+ ++ +
Sbjct: 332 PNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--I 364
++ + Q ++ ++ ++ + ++D + +M +G+ + +V +
Sbjct: 392 IDEINNRGQPANIIT--YNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGL 449
Query: 365 CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
C R R ++ D + Y L Y ++ G + G + S++++M+
Sbjct: 450 CKNGRLKDAQR--IYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQME 501
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 45/261 (17%)
Query: 52 VSQIKTT---LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
V Q+K L+ + + N + ++++ LI L + KKA VL + + G E
Sbjct: 242 VGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQ---GVEPN 298
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLF 166
+ Y L+ V+ V A HVF ++ +G+ P+ ++ +I LC +V A+ LF
Sbjct: 299 VVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING-LCKNKMVDEAVKLF 357
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM--------NKWYAANIAA---------- 208
+ M + PN+ TY + I G G + + N+ ANI
Sbjct: 358 KEM-HLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCK 416
Query: 209 -----------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G ++ TY +L+ G K R Y++++ G +I +
Sbjct: 417 NHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRM 476
Query: 252 LEKVLEGLCARRKLDRVKSFL 272
++ GLC D S L
Sbjct: 477 YTVMINGLCKEGFFDEALSLL 497
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 13/231 (5%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSS--PKKAQLVLEWRLDKMLKGNESCLD 109
V++ K +++ + + S+ +I L + + +L E L M +
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVT--- 371
Query: 110 EYACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
Y+ LI SG++ +V + + +G + +NSL+ + V A++L
Sbjct: 372 -YSSLIDGLCKSGRISDV---WDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALL 427
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M E +P+ TY + G G + + Y + G+ +N++ Y +I+G K
Sbjct: 428 TKM-KDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCK 486
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
FD +M G +P E ++ L K + L+ ++
Sbjct: 487 EGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIA 537
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 111/294 (37%), Gaps = 43/294 (14%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
F ++ +++SL + K + +++ LKG + + + LI + + FA +
Sbjct: 54 FEFNKILSSLVKMNHFKIAISFSQQME--LKGIQPEMFTFNILINCFSHLCQLNFAFSMV 111
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+ G +PD+ N+L+ +G V AL+ F V + + + +Y I+G
Sbjct: 112 AKILKLGYQPDTVTVNTLLRGLCLNGKVKEALN-FHDHVIRKRFHLDQVSYGTLINGLCK 170
Query: 192 LGN-------------------------------------VDAMNKWYAANIAAGFSVNV 214
G +DA + Y+ I NV
Sbjct: 171 SGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYD-LYSEMIVKKIYPNV 229
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
T+ SLI+G EM + P++ +++GLC ++ + S L
Sbjct: 230 VTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSV 289
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
++ G + N L+ Y + V++ + T++ +P V H +S +I
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNV--HSYSVMI 341
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 9/295 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + ME + + PD N ++ A +GDV A++L + MVS + KP TY++ + G
Sbjct: 181 VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVS-KGIKPGLVTYNSVLKGL 239
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G D + + A A G + +V+++ LI G +A + + RFY+EM + P +
Sbjct: 240 LRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDV 299
Query: 250 PILEKVLEGLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ L GL RR ++D +L+ + G + + ++ +C G + E +
Sbjct: 300 -VSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRD 358
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
+ P+V+ ++ ++ RL D E + M ++G+ +I Y
Sbjct: 359 EMVAFGCLPDVVT--YNTLLNGLCKERRLSDAEELLNEMKERGVP-PDLCTFTTLIHGYC 415
Query: 369 RCAAYDRLDLFLDHIKGSYKLRR--ATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
R ++ F D I +LR TY+ L+ G R G GK + + ++M E
Sbjct: 416 RDGNIEKALQFFDTIS-DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE 469
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 15/303 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF +M+A G+ PD FN LI +G++ AL ++ M P+ ++ I
Sbjct: 248 AREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM-RGRRVTPDVVSFSCLI 306
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F+ G +D ++ G + Y +I G +A R +EM++ G +
Sbjct: 307 GLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCL 366
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L GLC R+L + L + G + L+ YC G +++ +
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR---LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+T++ P+++ + G+ R L ++ DD+ F +
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE--------IFPNHVTYS 478
Query: 362 MVICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
++I S+ D FLD + TY+ ++ GY R+G K + +M+
Sbjct: 479 ILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD 538
Query: 421 EYM 423
+ M
Sbjct: 539 KVM 541
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+ KG + Y +I + NV M + PD +N+LI +
Sbjct: 497 LDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVK 556
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A +L +IM +E +P++ TY+ ISGFS GN+ + Y A G +
Sbjct: 557 EGKMHEAFNLLKIM-ENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRY 615
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
TY S+I+G + A + + ++EM+ G+ P
Sbjct: 616 TYMSMINGHVVAGNSKKSFQLHDEMLQKGLAP 647
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A+ F ++ Q ++PD +N+LI GD+ A L++ M S E + PN TY
Sbjct: 419 NIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIF-PNHVTY 477
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G VD + + G N+ TY S+I G ++ + +F +M
Sbjct: 478 SILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRH 537
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++P + ++ G K+ + LK +
Sbjct: 538 DKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIM 570
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 106/272 (38%), Gaps = 36/272 (13%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
+ +L R K ++G D ++CLI L + + A M G+ PD
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGV 335
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVS-------------------------SEE----- 174
++ +I +G ++ AL + + MV+ +EE
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395
Query: 175 ----YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ T+ I G+ GN++ +++ ++ TY +LI G + D
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDL 455
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +++M S I P+ +++ C + ++D +FL ++ G N +
Sbjct: 456 GKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSI 515
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+K YC G V + ++ L + P+++ +
Sbjct: 516 IKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 38/230 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++ VFT M++ G+ P FNSL+ L G A +++ M+S+ P++ T++ I
Sbjct: 168 SIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILI 227
Query: 187 SGFSSLGNVD------------------------------AMNKWYAANIAAG------- 209
GF G VD A A N+ G
Sbjct: 228 RGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVD 287
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ NV TY +LI G R+ + +EEM++ G+ + +++GLC RK +++K
Sbjct: 288 LNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIK 347
Query: 270 SFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ G G + + L+ C+C G +D+ + E +++ P+
Sbjct: 348 DILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPD 397
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 11/220 (5%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVV 160
G E + Y L+ + V A +V M + + P+ + +LI ++
Sbjct: 250 GCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE 309
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYES 219
AL++FE MV+ + K N+ TY+ I G + + G FS + T+ +
Sbjct: 310 KALAVFEEMVN-QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNT 368
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+H A + D + +E M L I P ++ LC ++ + L LL
Sbjct: 369 LMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERK 428
Query: 280 WKINENMAQKLVKCY-------CELGRVDELEEQLETLTK 312
++ + + LV Y CE G+ + E+ L +
Sbjct: 429 ILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMR 468
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 11/215 (5%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-------DVVTALSLFEIMVSSEEY 175
N+ A+ VF M I+PDSA +++L+ LC G D++ L +I++S +
Sbjct: 378 NLDDALKVFERMSELKIQPDSATYSALV-RSLCQGGHYEKAEDLLDKLLERKILLSGDGC 436
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
KP Y+ G K + + G + + +Y++LI G K F+S
Sbjct: 437 KPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYE 495
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
M+ +P E ++ GL K L+ +L + N + ++
Sbjct: 496 LLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLL 555
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
E GR E ++ + N L F +G +RL
Sbjct: 556 EQGRTSESASLIQLMLDKNIRQN--LSFSTGCVRL 588
>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
Length = 645
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 107 CLDEYACLIALSGKVQNVPFAMHV----FTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
C DE+ C I + G MHV ++ G+ ++A +N+LI G++ A
Sbjct: 358 CPDEFTCSIVVRGLCDG--GQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEA 415
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+ M + +PN +Y + I G S G + Y +A G NV TY +LIH
Sbjct: 416 LATCTRM-TEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIH 474
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
G K D+ R ++EM+ GI P+ + +++GLC + +RV+ ++F++
Sbjct: 475 GHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLC---RENRVQEAVRFVM 525
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 38/263 (14%)
Query: 95 WRL-DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W L D+ML+ G + Y LI V A V+ M AQ I P+ + ++ICA
Sbjct: 171 WELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICA 230
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G + A LF+ M +PN TY+ +SG +V++ Y + +G +
Sbjct: 231 LCEEGCIGDAERLFDAM-KEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNP 289
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK------------------ 254
N + +LI G KA+ F + EM G+ P++P+
Sbjct: 290 NAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALY 349
Query: 255 -----------------VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
V+ GLC ++ FL+ + G +N L+ YC +
Sbjct: 350 QEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRI 409
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
G ++E +T+ P V+
Sbjct: 410 GNLEEALATCTRMTEVGIEPNVV 432
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
Query: 112 ACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC L G K + A +F M +G+ P +N+LI AC G V A +++ M
Sbjct: 153 ACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQM 212
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V +++ PN TY I G + + + A AG N TY L+ G + D
Sbjct: 213 V-AQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDD 271
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+S Y+E++ G+ P+ I +++G C ++ K
Sbjct: 272 VNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMF 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 4/185 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG Q A+ ++ M G+ PD S++ LC G + F V +
Sbjct: 339 SGNAQE---ALALYQEMTRLGLCPDEFTC-SIVVRGLCDGGQMHVADRFLQGVQEDGVNL 394
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y+A I + +GN++ G NV +Y SLI G K Y
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM++ GI P++ ++ G +D K ++ G N LV C
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRE 514
Query: 298 GRVDE 302
RV E
Sbjct: 515 NRVQE 519
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ N+ A+ T M GI+P+ ++SLI G + A++++ MV
Sbjct: 399 YNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMV 458
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + +PN TY A I G + G +DA + + I G S N T L+ G +
Sbjct: 459 A-KGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRV 517
Query: 231 DSVDRFYEEMMSL 243
RF E L
Sbjct: 518 QEAVRFVMEYSGL 530
>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14770, mitochondrial; Flags: Precursor
Length = 940
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 96 RLDKMLKGNESCL--------DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R D + K +E+ L Y LIA K+ A V MEA+G PD+ FN
Sbjct: 660 RADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFN 719
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ V ALS + +M+ + PN TY+ I G S G + ++KW + +
Sbjct: 720 SLMHGYFVGSHVRKALSTYSVMMEAG-ISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKS 778
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY +LI G K + Y EM++ G++P ++ K+ +
Sbjct: 779 RGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQ 838
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ LK + G N + ++ C+L
Sbjct: 839 ARELLKEMGKRGVSPNTSTYCTMISGLCKL 868
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +++ M +GI D V+ L+ +GD+ A F++++ + PN TY A +
Sbjct: 315 ALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQV-PNVVTYTALV 373
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ + + NV TY S+I+G +K + +M ++
Sbjct: 374 DGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVV 433
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P+ V++GL K + K + G + N + LV +GR+ E++
Sbjct: 434 PNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 491
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G PD F+S+I LC G V L + PN TY +
Sbjct: 249 YRDMVMSGFDPDVVTFSSIINR-LCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLF 307
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
Y+ + G V++ Y L+ G KA D ++ ++ ++ +P++
Sbjct: 308 KANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC L + + +L N ++ Y + G ++E L +
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKM 427
Query: 311 TKCNQSP 317
N P
Sbjct: 428 EDQNVVP 434
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 74 WDAL-ITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVF 131
WD + L S K ++ +W M KG E + + ++ K + + ++
Sbjct: 539 WDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLW 598
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M++ GIKP S + +++ LC +G + A+ + M+ E + PN TY F+ S
Sbjct: 599 DKMKSCGIKP-SLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSS 656
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
DA+ K + ++ G ++ Q Y +LI K +M + G IP
Sbjct: 657 KHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTV 716
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G + + S ++ G N +++ + G + E+++ L +
Sbjct: 717 TFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEM 776
Query: 311 TKCNQSPE 318
P+
Sbjct: 777 KSRGMRPD 784
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++M G+ PDS ++NSLI +G V +SL + + P+ + I
Sbjct: 79 AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 138
Query: 187 SGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
F +G + +A ++ S++ TY ++I G + D +F EM+ +G
Sbjct: 139 HSFCKVGRLS-----FAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMG 193
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
I+P +++G C R K+ +
Sbjct: 194 ILPDTVSYNTLIDGFCKVGNFVRAKALV 221
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAM 128
F++ +I L + K ++ +E + L G N LD + G+++ V
Sbjct: 437 FTYGTVIDGLFKAG--KEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK--- 491
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFIS 187
+ M ++G+ D + SLI GD AL+ E M E P + +Y+ IS
Sbjct: 492 GLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM--QERGMPWDVVSYNVLIS 549
Query: 188 GFSSLGNVDAMNKW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V A W Y G ++ T+ +++ K D + + + +++M S GI
Sbjct: 550 GMLKFGKVGA--DWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK 607
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
PS+ V+ LC K++ L ++
Sbjct: 608 PSLMSCNIVVGMLCENGKMEEAIHILNQMM 637
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+++ M A G+ PD N LI + G + A+SL V S ++ TY+ ISG
Sbjct: 118 IYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS----IDTVTYNTVISGL 173
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G D ++ + + G + +Y +LI G K +F +E+ L +I
Sbjct: 174 CEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHT 233
Query: 250 PIL 252
+L
Sbjct: 234 ILL 236
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 120/304 (39%), Gaps = 13/304 (4%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A+ + ME GI PD +NSLI SG A + M E Y P+
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY-PDV 256
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++A I G V ++Y I ++ TY LI+G D + +
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G P + ++ G C +K++ + G N L++ YC G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLSFKSA 357
++ EE + C P ++ + + L+ L D +++ + M K G+ A
Sbjct: 377 LNVAEEIFRRMVFCGVHPNIITYN----VLLHGLCDNGKIEKALVILADMQKNGM---DA 429
Query: 358 EDVEMVICSYFRCAA---YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+ V I C A D D++ TY ++ G + GL + D++
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALF 489
Query: 415 NEMK 418
+MK
Sbjct: 490 RKMK 493
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 7/313 (2%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
+++ L++ K++ ++++ M+ GI + N L+ C C CS + ALS
Sbjct: 83 DFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCS-QLSLALSFLGK 141
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ ++P+ T+ + ++GF V + + G+ NV Y ++I G K++
Sbjct: 142 MIKLG-HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSK 200
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D+ M GI P + ++ GLC+ + + + +
Sbjct: 201 QVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFN 260
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ + GRV E EE E + + + P+++ +S +I + RLD+ E G M
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVT--YSLLIYGLCMYSRLDEAEEMFGFMV 318
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+G F ++I Y + + + LF + + TY L+ GY RAG
Sbjct: 319 SKG-CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377
Query: 408 GKLDSVINEMKFA 420
+ + M F
Sbjct: 378 NVAEEIFRRMVFC 390
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 118/300 (39%), Gaps = 40/300 (13%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGKV AM +F M+ G KP ++ +N+LI G ++ L E+M E KP
Sbjct: 143 SGKVDE---AMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKP 199
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +TY+ I + + ++ +A+G +V TY ++ + + + +R
Sbjct: 200 NDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLI 259
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M + P+ ++ G C + FL + G N + L+K Y +
Sbjct: 260 LKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDA 319
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
+ ++E L + + P+V+ FS I+ ++ + +D+ E
Sbjct: 320 TDTNGVDEALTLMEEFGIKPDVVT--FSTIMNAWSSAGLMDNCE---------------- 361
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++F D +K + Y L GY RAG K +S++ M
Sbjct: 362 -------------------EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM 402
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 7/228 (3%)
Query: 96 RLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
RL ++ N+ +E C I +SG K N+ A+ M+ G+ P+ VFNSLI
Sbjct: 257 RLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGY 316
Query: 154 LCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
L D + E + EE+ KP+ T+ ++ +SS G +D + + + AG
Sbjct: 317 L---DATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIE 373
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++ Y L G ++A + M G+ ++ I ++ G CA K+DR S
Sbjct: 374 PDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSL 433
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ + G N + L+ Y E + + EE L T+ + PE+
Sbjct: 434 CEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEM 481
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +V M A GI+PD +N++ A +G+ A L + + + KPN +T I
Sbjct: 220 AWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLI-LKMQYNKVKPNERTCGIII 278
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG+ GN+ ++ G N + SLI G L A D + VD M GI
Sbjct: 279 SGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIK 338
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ + +D + ++ G + + + L K Y G+ + E
Sbjct: 339 PDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESL 398
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L +++K V++ F+ II + + ++D +M + G S
Sbjct: 399 LTSMSKYGVQTNVVI--FTTIISGWCAAGKMDRAFSLCEKMHEMGTS 443
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M GI+PD ++ L + +G A SL M S + N + ISG
Sbjct: 362 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM-SKYGVQTNVVIFTTIISG 420
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + G +D G S N++TYE+LI G +A+ + M G++P
Sbjct: 421 WCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPE 480
Query: 249 IPILEKVLEG 258
+ ++ V +
Sbjct: 481 MSTMQLVADA 490
>gi|195620494|gb|ACG32077.1| membrane-associated salt-inducible protein [Zea mays]
Length = 393
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 6/188 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
IAL G+ +P A+ F S P + N+LI AC+ SG+ +F+ +
Sbjct: 114 IALFGQAHLLPDAISTFQS------SPSTRSLNALIFACIVSGNHTEXARVFQTFPDAHG 167
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN++T++A I F+ G + + + G N T+ + + G K FD +
Sbjct: 168 VKPNTETFNAIIKSFAESGTIRSFYSVFDEMCKKGLKPNSITFTTALAGFYKEEKFDDIK 227
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+P+ ++ LC + ++ + ++ G K N L+ +
Sbjct: 228 KVLELMKKNGCGESLPVYNVRVQSLCKLGRSGEARALVDEMMKKGTKPNWVTYNHLIYGF 287
Query: 295 CELGRVDE 302
C+ G ++E
Sbjct: 288 CKEGDLEE 295
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 40/235 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+AC++ SG F +A G+KP++ FN++I + SG + + S+F+ M
Sbjct: 144 FACIV--SGNHTEXARVFQTFP--DAHGVKPNTETFNAIIKSFAESGTIRSFYSVFDEMC 199
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-------FSVNVQ-------- 215
+ KPNS T+ ++GF D + K G ++V VQ
Sbjct: 200 K-KGLKPNSITFTTALAGFYKEEKFDDIKKVLELMKKNGCGESLPVYNVRVQSLCKLGRS 258
Query: 216 --------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
TY LI+G K D + R Y+EM G++ +
Sbjct: 259 GEARALVDEMMKKGTKPNWVTYNHLIYGFCKEGDLEEAKRLYKEMGRKGLVGDSDFYFML 318
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ LC LD + W + + LV R+DE + +E +
Sbjct: 319 IYYLCKGDDLDTALGLYNEIAAKNWVPCFSTMKMLVNGLAGSSRIDEAKGIIEKM 373
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 3/217 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + + Y L+ S KV+N+ F M ++G++PD +N+ I A L G
Sbjct: 436 QGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSE 495
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESL 220
A L E+M+S ++ TY+ F+ G GN+ DA W ++ G + TY L
Sbjct: 496 AFQLTEVMIS-RGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKM-VSDGLQPDCITYTCL 553
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
IH + ++ M+ G+ PS + C R L + + +L G
Sbjct: 554 IHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGV 613
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ NE L+ C +GR + + + + SP
Sbjct: 614 RPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSP 650
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 69 SSQFSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+S F+++ LIT + S K L LE + ++ + Y +I + NV
Sbjct: 300 ASAFTFNPLITGYFARGSVEKAGALQLEMENEGIV----PTVVTYNTIIHGMFRSGNVEA 355
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M A G+ PD +NSLI +G++ AL LF + + P+ TY+ +
Sbjct: 356 ARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAG-LAPSVLTYNILL 414
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ LG+++ ++ + G +V TY L++GS K R+ V F++EM+S G+
Sbjct: 415 DGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQ 474
Query: 247 P 247
P
Sbjct: 475 P 475
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A +F M G+ P + + I A G++ +A F+ M+
Sbjct: 550 YTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKML 609
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN TY+ I +G + + + + G S N TY LI G+ K ++
Sbjct: 610 E-EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNW 668
Query: 231 DSVDRFYEEMMSLGIIP 247
+ R Y EM GI P
Sbjct: 669 EEAIRLYSEMHQHGIHP 685
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +GI P +N++I SG+V A F + + + P+ TY++ I+G+ G
Sbjct: 328 MENEGIVPTVVTYNTIIHGMFRSGNVEAARMKF-VEMRAMGLLPDLITYNSLINGYCKAG 386
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ + AG + +V TY L+ G + D + RF +EM+ G P +
Sbjct: 387 NLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYT 446
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGG 279
++ G R L V+ F +L G
Sbjct: 447 ILMNGSRKVRNLAMVREFFDEMLSKG 472
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K + FN LI G V A +L ++ + +E P TY+ I G GNV+A
Sbjct: 299 KASAFTFNPLITGYFARGSVEKAGAL-QLEMENEGIVPTVVTYNTIIHGMFRSGNVEAAR 357
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A G ++ TY SLI+G KA + + ++ G+ PS+ +L+G
Sbjct: 358 MKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGY 417
Query: 260 CARRKLDRVKSFLKFLLGGG 279
C L+ + F + ++ G
Sbjct: 418 CRLGDLEEARRFKQEMVEQG 437
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A ++ M + G++PD + LI A G + A +F+ M+ S P++
Sbjct: 524 KSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSG-LPPSA 582
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY FI + GN+ + W+ + G N TY LIH + + + + E
Sbjct: 583 VTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHE 642
Query: 240 MMSLGIIPSIPILEKVLEGLC 260
M+ G+ P+ +++G C
Sbjct: 643 MLERGLSPNKYTYTLLIDGNC 663
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 35/225 (15%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFISG 188
V+ M GI+P +N+L+ + G V A L E+ P+ TY+ I+G
Sbjct: 218 VYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVING 277
Query: 189 FSSLGNVDA----MNKWYAANIAAGFSVN------------------------------V 214
+ G ++ +++ + A+ F+ N V
Sbjct: 278 LARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTV 337
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY ++IHG ++ + ++ + EM ++G++P + ++ G C L
Sbjct: 338 VTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGD 397
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L G + L+ YC LG ++E + + + P+V
Sbjct: 398 LKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDV 442
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 124/319 (38%), Gaps = 40/319 (12%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S ++ L+TS+ + L L ++D G + A +I + V FA
Sbjct: 69 STVDFNRLLTSIAKTKHHSTLLSLSRQMDSF--GIPPDVYTLAIVINSLCHLNRVDFAFS 126
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ G +PD+ F +LI G + AL LF+ M+ E ++PN TY I+G
Sbjct: 127 ALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMI-GEGFQPNVVTYGTLINGL 185
Query: 190 SSLGN--------------------------VDAMNK---------WYAANIAAGFSVNV 214
+GN +D++ K ++ I G S N+
Sbjct: 186 CKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLIHG K ++ V EM+ I+P + L V++ LC + +
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + N L+ +C VD + +T+ + V+ ++ +I Y
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVI--SYNTLINGYCKI 363
Query: 335 DRLDDVEYSVGRMGKQGLS 353
+D Y M +Q L+
Sbjct: 364 QSVDKAMYLFEEMSRQELT 382
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M +G++P+ +N+L+ +V A+ +F+ MV ++ N +Y+ I
Sbjct: 299 AHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH-KDCVANVISYNTLI 357
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +VD + + N TY +LIHG + EM++ G I
Sbjct: 358 NGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQI 417
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + + LC R LD+ + LK + G W + + ++ C G +++ +
Sbjct: 418 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 307 LETLTKCNQSPEV 319
L+ P V
Sbjct: 478 FSNLSSKGLQPNV 490
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 6/215 (2%)
Query: 129 HVFTSMEA---QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD N+++ A G V A + ++M+ +PN TY+A
Sbjct: 263 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNAL 321
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G VD K + + NV +Y +LI+G K + D +EEM +
Sbjct: 322 MDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+ ++ GLC +L S ++ G + + L C+ +D+
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
L+ + N P++ ++ G+ R L D D
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARD 476
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q+V AM++F M Q + P++ +N+LI G + A+SLF MV
Sbjct: 353 YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 412
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY ++D A + + ++Q Y +++ G +A +
Sbjct: 413 ARGQI-PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGEL 471
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + + S G+ P++ ++ GLC +
Sbjct: 472 EDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 503
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 2/222 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D M+ +G E + Y L+ V A+ VF +M + + +N+LI
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V A+ LFE M S +E PN+ TY+ I G +G + + +A G ++
Sbjct: 363 IQSVDKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLV 421
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L K R D + + P I I +L+G+C +L+ + L
Sbjct: 422 TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNL 481
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G + N ++ C+ G + E + + K SP
Sbjct: 482 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSP 523
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 167/386 (43%), Gaps = 10/386 (2%)
Query: 36 SVSSSNPLISRLLQVPVSQIKTTL-DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
SV + N LIS ++ + + T L + +++ ++ L++ L + A +
Sbjct: 316 SVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAI--- 372
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
++ML+ G + L Y LI L G P M VF + + G PD +N+L+
Sbjct: 373 GTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVF 432
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+G +F+ M S Y P TY + IS +S G D + Y I AG +
Sbjct: 433 GQNGLDTEVSGVFKEMKKSG-YVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPD 491
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ TY +++ + ++ ++ + EM +L P +L +KLD++KS +
Sbjct: 492 ISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSE 551
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ + + + + LV ++ + + E+ L + S ++ + + +I +Y
Sbjct: 552 DIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDI--NVLNAMISIYGK 609
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY-KLRRA 392
+ + VE + M + ++ +A ++ Y R ++ + L IK S + R
Sbjct: 610 NGMVKKVEEILSLMKESSINLSTAT-YNSLMHMYSRLGDCEKCENILTEIKSSRARPDRY 668
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
+Y+ ++ Y R G + + +EMK
Sbjct: 669 SYNTMIYAYGRKGQMKEASRLFSEMK 694
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 146/349 (41%), Gaps = 10/349 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF--AMHV 130
++ ALI++L +S + + + R+ + G L Y ++ + K+ VP+ + +
Sbjct: 178 AYTALISALSRASRFRDAVAVFRRM--VANGVCPALVTYNVVLHVYSKIA-VPWKEVLAL 234
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
SM GI D +N+LI C A +F+ M ++ ++P+ T ++ + +
Sbjct: 235 VDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAG-FEPDKVTLNSLLDVYG 293
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
D G +V TY SLI +K + + EEM GI P +
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GL K+D +L G K N L+K + G+ E+ + +
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEI 413
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P+V+ ++ ++ ++ + +V M K G + V + I SY RC
Sbjct: 414 RSAGFVPDVVT--WNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSL-ISSYSRC 470
Query: 371 AAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+D+ ++++ I+ +TY+ +++ R G + + + EM+
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEME 519
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 77/187 (41%), Gaps = 1/187 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L+ ++ KV N+ F + + D V N++I +G V + +M S
Sbjct: 568 LVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESS 627
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
++ TY++ + +S LG+ + ++ + +Y ++I+ +
Sbjct: 628 -INLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEA 686
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R + EM G++P I ++ A + +++++ G K NE +++
Sbjct: 687 SRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQE 746
Query: 294 YCELGRV 300
YC GR+
Sbjct: 747 YCSHGRI 753
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 5/232 (2%)
Query: 77 LITSLQSSSPKKAQLV--LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
++T+L + K+ + LE R + +G ++ L Y L+ +V+++ A + M
Sbjct: 349 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 408
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG- 193
G+KPD + +LI C G++ TA+ + + M S E + TY A ISG S G
Sbjct: 409 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM-SDEGVALDDVTYTALISGLSKAGR 467
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+VDA + + AG + TY +I K D + + +EM + G P I
Sbjct: 468 SVDA-ERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYN 526
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
V+ G C+ ++ L +L G N+ L+ +C+ G+V + EE
Sbjct: 527 VVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEE 578
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 6/206 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G++Q+ AM +F M +G+ P++ V +LI A GDV L L M ++ K
Sbjct: 325 TGRIQD---AMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM-ATRGVKA 380
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A ++GF + ++ A N G + TY +LI G K + D+
Sbjct: 381 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMK 440
Query: 238 EEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM G+ ++ GL A R +D + L ++ G + + ++ +C+
Sbjct: 441 QEMSDEGVALDDVTYTALISGLSKAGRSVD-AERILCEMMEAGLQPDNTTYTMVIDAFCK 499
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
G V + L+ + ++P ++ +
Sbjct: 500 NGDVKTGFKHLKEMQNKGKNPGIVTY 525
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L ++ +VP A + + G+ P++ FN L+ + SG + +A ++F+ M+ +
Sbjct: 216 LMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML-RRGVQ 274
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P T++ +SG +++ N AG + +V TY + I G K
Sbjct: 275 PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEM 334
Query: 237 YEEMMSLGIIPSIPILEKVLEGLC 260
+EEM G+ P+ +L +++ C
Sbjct: 335 FEEMCERGLNPNTVVLTTLIDAHC 358
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/121 (15%), Positives = 50/121 (41%)
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+Y + AG + + L+ +++ S ++EM+ G+ P++ ++ G+C
Sbjct: 229 FYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMC 288
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ + + G + ++ C+ GR+ + E E + + +P +
Sbjct: 289 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 348
Query: 321 L 321
+
Sbjct: 349 V 349
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 1/222 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME G++ +++L +
Sbjct: 69 LDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M+S E +P T++ I GF G VD N+++ + S +V T
Sbjct: 129 GRFMMAKRYFNKMLS-EGIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMKSREISPDVVT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++I+G + + D ++++ EM I P++ +++G + ++D ++ +
Sbjct: 188 YNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G G K N L+ C+ G++ E + L+ + +P+
Sbjct: 248 GYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPK 289
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 16/259 (6%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWR-LDKML-KGNESCLDEYACLIA---LSGKVQNVPFA 127
S+DAL + ++ + ++ R +KML +G E + LI LSGKV A
Sbjct: 117 SYDALFKVIM----RRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDT---A 169
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
F M+++ I PD +N++I C + A F + + +P +Y I
Sbjct: 170 NRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYF-VEMKGRNIEPTVVSYTTLIK 228
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+ S+ VD + G N TY +L+ G A +EM+ I P
Sbjct: 229 GYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAP 288
Query: 248 SI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I +++ C L LK ++ L++ +C+ G+ D+ +
Sbjct: 289 KDNSIFMRLISSQCEAGNLGAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKL 348
Query: 307 LETLTKCN--QSPEVLLHF 323
L+ L + + P+ LH
Sbjct: 349 LDKLIEKDIILRPQSTLHM 367
>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 938
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 96 RLDKMLKGNESCL--------DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R D + K +E+ L Y LIA K+ A V MEA+G PD+ FN
Sbjct: 658 RADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFN 717
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ V ALS + +M+ + PN TY+ I G S G + ++KW + +
Sbjct: 718 SLMHGYFVGSHVRKALSTYSVMMEAG-ISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKS 776
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY +LI G K + Y EM++ G++P ++ K+ +
Sbjct: 777 RGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQ 836
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ LK + G N + ++ C+L
Sbjct: 837 ARELLKEMGKRGVSPNTSTYCTMISGLCKL 866
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +++ M +GI D V+ L+ +GD+ A F++++ + PN TY A +
Sbjct: 313 ALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQV-PNVVTYTALV 371
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ + + NV TY S+I+G +K + +M ++
Sbjct: 372 DGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVV 431
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P+ V++GL K + K + G + N + LV +GR+ E++
Sbjct: 432 PNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 489
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G PD F+S+I LC G V L + PN TY +
Sbjct: 247 YRDMVMSGFDPDVVTFSSIINR-LCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLF 305
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
Y+ + G V++ Y L+ G KA D ++ ++ ++ +P++
Sbjct: 306 KANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 365
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC L + + +L N ++ Y + G ++E L +
Sbjct: 366 TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKM 425
Query: 311 TKCNQSP 317
N P
Sbjct: 426 EDQNVVP 432
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 74 WDAL-ITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVF 131
WD + L S K ++ +W M KG E + + ++ K + + ++
Sbjct: 537 WDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLW 596
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M++ GIKP S + +++ LC +G + A+ + M+ E + PN TY F+ S
Sbjct: 597 DKMKSCGIKP-SLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSS 654
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
DA+ K + ++ G ++ Q Y +LI K +M + G IP
Sbjct: 655 KHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTV 714
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G + + S ++ G N +++ + G + E+++ L +
Sbjct: 715 TFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEM 774
Query: 311 TKCNQSPE 318
P+
Sbjct: 775 KSRGMRPD 782
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++M G+ PDS ++NSLI +G V +SL + + P+ + I
Sbjct: 77 AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 136
Query: 187 SGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
F +G + +A ++ S++ TY ++I G + D +F EM+ +G
Sbjct: 137 HSFCKVGRLS-----FAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMG 191
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
I+P +++G C R K+ +
Sbjct: 192 ILPDTVSYNTLIDGFCKVGNFVRAKALV 219
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAM 128
F++ +I L + K ++ +E + L G N LD + G+++ V
Sbjct: 435 FTYGTVIDGLFKAG--KEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK--- 489
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFIS 187
+ M ++G+ D + SLI GD AL+ E M E P + +Y+ IS
Sbjct: 490 GLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM--QERGMPWDVVSYNVLIS 547
Query: 188 GFSSLGNVDAMNKW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V A W Y G ++ T+ +++ K D + + + +++M S GI
Sbjct: 548 GMLKFGKVGA--DWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK 605
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
PS+ V+ LC K++ L ++
Sbjct: 606 PSLMSCNIVVGMLCENGKMEEAIHILNQMM 635
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+++ M A G+ PD N LI + G + A+SL V S ++ TY+ ISG
Sbjct: 116 IYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS----IDTVTYNTVISGL 171
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G D ++ + + G + +Y +LI G K +F +E+ L +I
Sbjct: 172 CEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHT 231
Query: 250 PIL 252
+L
Sbjct: 232 ILL 234
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 103/256 (40%), Gaps = 4/256 (1%)
Query: 97 LDKMLKGNES-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L MLKG + L Y +I + A+ V M+A G +PD + LI
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ A +F M+ PN TY A ISG+ +D + +G NVQ
Sbjct: 518 ISKMELASGMFNEMMD-RGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQ 576
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LIHG K +F + + M+ I P + V+ GLC + +
Sbjct: 577 TYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKM 636
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+ G N + L++ + GRV+E EE L K P+ + + +I + +S
Sbjct: 637 VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVT--YVKMIEVCVMSG 694
Query: 336 RLDDVEYSVGRMGKQG 351
++D +G M G
Sbjct: 695 KVDRAFDFLGEMINAG 710
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + L Y L+ K+ M + + +G++P+ ++NS+I A G+V
Sbjct: 187 RGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRD 246
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A S+ + S KP++ TY + I G+ ++D+ + + G N TY +LI
Sbjct: 247 AESIINKVFKS-GMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLI 305
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G + + F EM G++P++ + LC +++ WK
Sbjct: 306 NGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE-----------DAWK 354
Query: 282 INENMAQKLVK 292
I +M +K K
Sbjct: 355 IFIDMKKKGCK 365
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Query: 112 ACLIALS--GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT--ALSLFE 167
A ++AL G++++ A +F M+ +G KP+ + SLI SG V+ A+ LF
Sbjct: 338 APIVALCDMGRIED---AWKIFIDMKKKGCKPNVYTYTSLI-----SGQRVSRMAIGLFH 389
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M S + PN+ TY+A ++ +D+ + G N +Y LI G
Sbjct: 390 RM-SRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTI 448
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + M+ P++ +++G C D L+ + G + +E
Sbjct: 449 GDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSY 508
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+L+ +C++ +++ + P + ++ +I Y ++LD + RM
Sbjct: 509 TELISGFCKISKMELASGMFNEMMDRGLCPNEVT--YTALISGYCKDEKLDCAARMLERM 566
Query: 348 GKQG 351
+ G
Sbjct: 567 KRSG 570
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 25/235 (10%)
Query: 91 LVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
L LE +KM+K G L Y+ LI G+ V A +F+ ++ QG+ PD + +
Sbjct: 628 LALEM-FNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKM 686
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS------------------ 191
I C+ SG V A M+++ +P +TYD I G +
Sbjct: 687 IEVCVMSGKVDRAFDFLGEMINAG-CQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTST 745
Query: 192 ----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ N D ++ + F ++ Q Y++L+ ++ + + Y M+S P
Sbjct: 746 FDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCP 805
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + L L K+D K + +++ ++L+ C+L R E
Sbjct: 806 NQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKE 860
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 3/183 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
T+L S K +L R+ + +K G + Y LI K N A + M
Sbjct: 544 TALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLE 603
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ I PD ++++I +G + AL +F MV PN TY + I G V+
Sbjct: 604 EKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVK-HGCLPNLHTYSSLIQALGQEGRVE 662
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ ++ G + TY +I + + D F EM++ G P++ + ++
Sbjct: 663 EAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLI 722
Query: 257 EGL 259
+GL
Sbjct: 723 KGL 725
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 3/203 (1%)
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I +C ++ AL+ + M S K TY + + L + Y +
Sbjct: 164 MIKSCSNKAEMTQALNYLD-MFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILRE 222
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G N+ Y S+I+ K + + ++ G+ P ++ G C R LD
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ G + N L+ C GRV+E + + +T+ P V H F+ I
Sbjct: 283 FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTV--HTFTAPI 340
Query: 329 RLYALSDRLDDVEYSVGRMGKQG 351
R++D M K+G
Sbjct: 341 VALCDMGRIEDAWKIFIDMKKKG 363
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 136/320 (42%), Gaps = 10/320 (3%)
Query: 8 LSVAKSSRYLLMPLRFDRL-LCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIF- 65
L V SR +P L L N + + +V S N ++ LL+ S + D+ +F
Sbjct: 137 LVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFR 196
Query: 66 -----AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120
+ + ++++ +I + S + L +++K +G + Y LI S K
Sbjct: 197 DMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEK--EGISPNVVTYNTLIDASCK 254
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+ V AM + +M G+ + +NS+I G + L E M + P+
Sbjct: 255 KKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEM-RGKGLVPDEV 313
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ ++GF GN+ + + G S NV TY +LI+ KA + +++M
Sbjct: 314 TYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQM 373
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G+ P+ +++G C + ++ L ++ G+ + LV YC LGRV
Sbjct: 374 RVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRV 433
Query: 301 DELEEQLETLTKCNQSPEVL 320
E L + + P+V+
Sbjct: 434 QEAVGILRGMVERGLPPDVV 453
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 16/201 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G+ PD + SLI A G++ AL L + MV + P++ TY I
Sbjct: 506 AFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMV-QRGFLPDNVTYSVLI 564
Query: 187 SGFSSLGNVDAMNK-----WYAANIAAGFSVNV----------QTYESLIHGSLKARDFD 231
+G + + +Y ++ + N ++ E L+ G +
Sbjct: 565 NGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMN 624
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
DR ++ M+ P+ I ++ G + + + L + + LV
Sbjct: 625 EADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALV 684
Query: 292 KCYCELGRVDELEEQLETLTK 312
K G DEL L+ + +
Sbjct: 685 KALAREGMNDELSRLLQNILR 705
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M QGI+PD FN+++C G V+ A L ++M +P +Y I
Sbjct: 467 AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM-ERVGTRPGVISYTTLI 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G +D K ++ G + TY +L+HG +A D + EM+ GI
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKI 282
P + +L GL R+ K ++ G W I
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 6/228 (2%)
Query: 128 MH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH + M G+ PD +FN + A + A+ +F M + P+ Y A I
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKM-KQQGLSPDVVNYGALI 420
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + + G + N+ + SL++G ++ FY EM++ GI
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIR 480
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L LC + ++ + + + + G + L+ +C +GR+DE +
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKS 540
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR-MGKQGLS 353
L+ + P+ ++ ++ Y + R+DD Y V R M + G++
Sbjct: 541 LDVMLSVGLKPDEWT--YNTLLHGYCRAGRIDDA-YGVFREMLRNGIT 585
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 3/226 (1%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+H+ + + P+ + +I G V A +LF M+ +PN TY I
Sbjct: 188 LHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVID 246
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G VD + I G + TY LIHG L + V R EEM + G+ P
Sbjct: 247 GLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKP 306
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L LC + + ++ G K N + L+ Y G + E+ + L
Sbjct: 307 DCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLL 366
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + SP+ H F+ I YA +D+ + +M +QGLS
Sbjct: 367 NLMVENGLSPD--HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AMH+F M+ QG+ PD + +LI A G V A+ F M++ E PN +++ +
Sbjct: 397 AMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMN-EGVAPNIFVFNSLV 455
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ + ++Y + G +V + +++ R + M +G
Sbjct: 456 YGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR 515
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G C ++D L +L G K +E L+ YC GR+D+
Sbjct: 516 PGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575
Query: 307 LETLTKCNQSPEVLLH 322
+ + +P V+ +
Sbjct: 576 FREMLRNGITPGVVTY 591
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 135/365 (36%), Gaps = 76/365 (20%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A+ V + +DK +K + D Y CLI + + + M A G+KPD +
Sbjct: 256 RAEGVFQQMIDKGVKPDN---DTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK------- 200
SL+ +G A LF+ M+ + KPN Y I G+++ G + M+
Sbjct: 313 SLLNYLCNNGRCREARFLFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVE 371
Query: 201 ------WYAANI----------------------AAGFSVNVQTYESLIHGSLKARDFDS 232
+ NI G S +V Y +LI K D
Sbjct: 372 NGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDD 431
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+ +MM+ G+ P+I + ++ GLC K ++ K F +L G + + ++
Sbjct: 432 AVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILC 491
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C G+V + + ++ + + P V+ ++ +I + L R+D+ S+ M GL
Sbjct: 492 NLCTKGQVMKAQRLIDLMERVGTRPGVI--SYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
K TY+ L+ GY RAG
Sbjct: 550 -----------------------------------KPDEWTYNTLLHGYCRAGRIDDAYG 574
Query: 413 VINEM 417
V EM
Sbjct: 575 VFREM 579
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 3/256 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L+ M +G + + Y +I K Q V A VF M +G+KPD+ +N LI L
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + E M S+ KP+ TY + ++ + G + + I G NV
Sbjct: 287 GKWKEVVRMLEEM-SAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAI 345
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LIHG + M+ G+ P I + + +D +
Sbjct: 346 YGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMK 405
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G + L+ C+LGRVD+ + + +P + + F+ ++ D+
Sbjct: 406 QQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV--FNSLVYGLCTVDK 463
Query: 337 LDDVEYSVGRMGKQGL 352
+ + M QG+
Sbjct: 464 WEKAKEFYFEMLNQGI 479
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 88 KAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
K Q++ RL +++ G + Y LI V + A M + G+KPD
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWT 555
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+L+ +G + A +F M+ + P TY + G + + Y
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRN-GITPGVVTYSTILHGLFTTRRFSEAKELYLNM 614
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I +G N+ Y +++G K D + ++ + S
Sbjct: 615 ITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 23/268 (8%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K QL+ E M KG Y+ +I V A +F M+ G+ PD +
Sbjct: 271 KAFQLIKEM----MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI + +G + A LFE M S P TY A I + V N + +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG----------------IIPSIP 250
AG N TY +L+ G KA + Y +++ + P++
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC K+D L +L G + N + L+ +C+ G++D +E +
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLD 338
TKC P V H ++ +I RLD
Sbjct: 506 TKCGYLPSV--HTYTSLIDRMFKDGRLD 531
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 53/341 (15%)
Query: 94 EWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+W ++M G + Y LI K + VP A +F M G +P+ + +L+
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402
Query: 153 CLCSGDVVTALSLFEIMVSSEE---------------YKPNSKTYDAFISGFSSLGNVDA 197
+G++ A ++ ++ + + PN TY A + G VD
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ A +++G N Y++LI G KA DS + +M G +PS+ +++
Sbjct: 463 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLID 522
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ +LD L +L N ++ C +G ++ + L + + SP
Sbjct: 523 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
V+ + AL D L G+ GK LS LD
Sbjct: 583 NVVTY--------TALIDGL-------GKAGKIDLS----------------------LD 605
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + TY L+ AGL K ++ EMK
Sbjct: 606 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 17/246 (6%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG K + + + + M +G P+ ++FNSL+ + D A L M +
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 207
Query: 175 YKPNSKTYDAFIS---GFSSLGNVDAMN---KWYAANIAAGF---SVNVQTYESLIHGSL 225
P Y+ FI G L + D ++ K Y +AA VNV + + G
Sbjct: 208 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K FD + +EMM G +P KV+ LC K+++ + + G +
Sbjct: 268 K---FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C+ G +++ + E + SP V+ ++ +I Y + ++
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT--YTALIHAYLKAKQVPQANDIFH 382
Query: 346 RMGKQG 351
RM G
Sbjct: 383 RMVDAG 388
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 107/290 (36%), Gaps = 35/290 (12%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD ML G E Y LI K + A VF M G P + SLI
Sbjct: 467 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 526
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A+ + M+ + PN TY A I G +G + K + G S NV
Sbjct: 527 DGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL--- 272
TY +LI G KA D + +M G P+ ++ LCA LD+ + L
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 645
Query: 273 ------KFLLG-------------GGWKINENMAQ-----------KLVKCYCELGRVDE 302
K+L G I E M L+ C+ + GR++
Sbjct: 646 KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEI 705
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E + + + S + ++ +I+ L+ ++++ M ++G
Sbjct: 706 AMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGF 755
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 33/187 (17%)
Query: 175 YKPNSKTYDAFISGFSSLGNVD--------------AMNKWYAANIAAG----------- 209
Y+P+ TY+A + SS G VD M+++ A
Sbjct: 36 YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95
Query: 210 -------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
F ++ +I G ++A FD F M IP++ +L G +
Sbjct: 96 DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 155
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLL 321
++L K + ++ G N ++ LV YC + L +T C P V+
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215
Query: 322 HFFSGII 328
+ F G I
Sbjct: 216 NIFIGSI 222
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 36/201 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI GK + ++ +FT M +G P+ + LI LC+ ++
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH-LCAAGLLD 636
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFS-----SLGNVDAMNKWYAANIAAGFSV---- 212
L + + + Y I GFS SLG ++ M + IA + +
Sbjct: 637 KARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 696
Query: 213 ----------------------NVQT----YESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+V+T Y SLI A + R Y EM G +
Sbjct: 697 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 756
Query: 247 PSIPILEKVLEGLCARRKLDR 267
P + + +++GL +K D
Sbjct: 757 PELSVFVCLIKGLVEVKKWDE 777
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 140/350 (40%), Gaps = 11/350 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIALS 118
D V F S S+ LI + +A + L R+++ ++ N Y+ +I
Sbjct: 152 DKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVI---YSMIIDRL 208
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K V A ++T M +GI PD ++ L+ G + A+ L MV E P+
Sbjct: 209 CKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMV-LENINPD 267
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY + G V A + A +++V Y +L+ G + ++ R +
Sbjct: 268 IYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFY 327
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M +G+ P + ++ GLC +++D + + + + L+ C C+ G
Sbjct: 328 TMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSG 387
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ + + + + Q P+V+ ++ +I + LD +M Q +
Sbjct: 388 RISYVWDLFDEMLDRGQPPDVIT--YNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYT 445
Query: 359 DVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
++ +C R + L+ F D + Y L TY ++ G + GL
Sbjct: 446 FTILLDGLCKVGRLK--NALEFFQDLLTKGYCLNVRTYTVMINGLCKEGL 493
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 3/201 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPN 178
V+ P A+ ++ ME ++PD N +I C C G VV A S ++ Y+PN
Sbjct: 70 NVKRYPTAISLYKQMELSEVEPDYFTLN-IIINCFCHFGQVVLAFSGVSKILKLG-YQPN 127
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ T + + G G V +++ +A GF ++ +Y LI+G K + + R
Sbjct: 128 TITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLR 187
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ I P++ I +++ LC +D ++G G + LV +C +G
Sbjct: 188 RIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVG 247
Query: 299 RVDELEEQLETLTKCNQSPEV 319
+++ + L + N +P++
Sbjct: 248 QLNRAIDLLNEMVLENINPDI 268
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 9/235 (3%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V V A VF +M G+ PD ++ +I V AL+LFE + + P++
Sbjct: 316 VNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE-EIHQKNMVPDTV 374
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY + I G + + + + G +V TY +LI K D + +M
Sbjct: 375 TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM 434
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
I P++ +L+GLC +L F + LL G+ +N ++ C+ G +
Sbjct: 435 KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLL 494
Query: 301 DE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
DE L+ ++E C F +IR + D D E V M +GL
Sbjct: 495 DEALALQSRMED-NGCISDAVT----FEIMIRAFFDKDENDKAEKLVREMIARGL 544
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + + +F M +G PD +N+LI A +G + A++LF M
Sbjct: 376 YTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKM- 434
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN T+ + G +G + +++ + G+ +NV+TY +I+G K
Sbjct: 435 KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLL 494
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
D M G I E ++ + + D+ + ++ ++ G
Sbjct: 495 DEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 119/310 (38%), Gaps = 18/310 (5%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L GKV+ A+ + AQG + + LI G+ A+ L +
Sbjct: 138 LCLEGKVKE---ALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLR-RIERWS 193
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+PN Y I VD Y + G S +V TY L+ G +
Sbjct: 194 IRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAI 253
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
EM+ I P I +++ LC K+ ++ L ++ ++ + L+ Y
Sbjct: 254 DLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV-----EYSVGRMGK 349
C + V+ + T+T+ +P+V H +S +I R+D+ E M
Sbjct: 314 CLVNEVNNAKRVFYTMTQMGVTPDV--HCYSIMINGLCKIKRVDEALNLFEEIHQKNMVP 371
Query: 350 QGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
+++ S D +C R + +D D LD + + TY+ L+ + G
Sbjct: 372 DTVTYTSLID---CLCKSGRISYVWDLFDEMLDRGQPPDVI---TYNNLIDALCKNGHLD 425
Query: 409 KLDSVINEMK 418
+ ++ N+MK
Sbjct: 426 RAIALFNKMK 435
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ A+ M G KPD +N+LI G V A L E +
Sbjct: 293 YNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQAL 352
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN +Y I + G D + W G ++ TY +L+HG + A +
Sbjct: 353 G-KGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEV 411
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D E+M+ G+ P I ++ GLC + KL K L +L + + L
Sbjct: 412 DVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATL 471
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V + G +DE + E + +P ++ ++ +I+ Y + D + RM K+
Sbjct: 472 VDGFIRNGNLDEARKLFELTIEKGMNPGIV--GYNAMIKGYCKFGMMKDAMACINRMKKR 529
Query: 351 GLS 353
L+
Sbjct: 530 HLA 532
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 1/187 (0%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
QG P+ +N+LI GD+ A LF I + + + P +TY A I+GF G+
Sbjct: 213 GQGCIPNIIFYNTLIDGYCKKGDMEMANGLF-IELKLKGFLPTVETYGAIINGFCKKGDF 271
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A+++ + G +VNVQ Y ++I K E M+ G P I +
Sbjct: 272 KAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTL 331
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G C K+ L+ LG G N+ L+ YC+ G D L +T+
Sbjct: 332 ISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGH 391
Query: 316 SPEVLLH 322
P+++ +
Sbjct: 392 KPDLVTY 398
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 119/299 (39%), Gaps = 28/299 (9%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V +M + + P + +I A SG V AL L+ ++ + Y P+ ++ ++
Sbjct: 116 VLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNML 175
Query: 190 SSLGNVDAMNKWYAANIAA--------------------GFSVNVQTYESLIHGSLKARD 229
LG ++ K+ + G N+ Y +LI G K D
Sbjct: 176 VKLGRIEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGD 235
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + + E+ G +P++ ++ G C + + L + G +N +
Sbjct: 236 MEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNT 295
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRM 347
++ + G + + E +E + +C P+++ + SG R +S+ +E ++G+
Sbjct: 296 IIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGK- 354
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
GL + +I +Y + YDR + ++ + +K TY LV G AG
Sbjct: 355 ---GL-MPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAG 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG K +P A + M Q + PD+ V+ +L+ + +G++ A LFE+ +
Sbjct: 435 ILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIE- 493
Query: 173 EEYKPNSKTYDAFISGFSSLGNV-DAM---NKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
+ P Y+A I G+ G + DAM N+ ++A + TY ++I G +K
Sbjct: 494 KGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAP----DEFTYSTVIDGYVKQH 549
Query: 229 DFDSVDRFYEEMMSLGIIPSI 249
D D + + EM+ + P++
Sbjct: 550 DLDGAQKMFREMVKMKCKPNV 570
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 1/179 (0%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
W ++ +G++ L Y L+ V A+ + M +G+ PD+ ++N L+ L
Sbjct: 382 WLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG-L 440
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
C + A L + + P++ Y + GF GN+D K + I G + +
Sbjct: 441 CKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGI 500
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
Y ++I G K M + P V++G + LD + +
Sbjct: 501 VGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFR 559
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A L +E + KG + + Y LI KV ++ A + M +G+KPD +
Sbjct: 345 RADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYT 404
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI C GD+ +AL + + MV E + ++ + A ISGF G V + +
Sbjct: 405 MLIDGCCKEGDLESALEIRKEMVK-EGIELDNVAFTALISGFCREGQVIEAERTLREMLE 463
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
AG + TY +IHG K D + + +EM G +P + +L GLC + ++
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
L +L G ++ L++ +C+ G ++ ++
Sbjct: 524 ANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDK 561
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A +F + +G++P FN+LI SG++ L M+ + + P+
Sbjct: 237 KEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVF-PDV 295
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G +D NK + G N T+ +LI+G D Y++
Sbjct: 296 FTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQ 355
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P + ++ GLC L K + + G K ++ L+ C+ G
Sbjct: 356 MLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG- 414
Query: 300 VDELEEQLE 308
+LE LE
Sbjct: 415 --DLESALE 421
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 1/178 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD ++ LI G + A LF + + PN T+ I+G G D +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLF-LEMCDRGLVPNDVTFTTLINGHCVTGRADLGME 351
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
Y + G +V TY +LI+G K D + EM G+ P +++G C
Sbjct: 352 IYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCC 411
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ K ++ G +++ L+ +C G+V E E L + + P+
Sbjct: 412 KEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G PD FN L+ LC + L + +P +++ I+G+ GN+D
Sbjct: 220 GYPPDVCKFNVLMHR-LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQ 278
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + +V TY LI+G K D ++ + EM G++P+ ++
Sbjct: 279 GFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLIN 338
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C + D + +L G K + L+ C++G + E ++ + +T+ P
Sbjct: 339 GHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 318 E 318
+
Sbjct: 399 D 399
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
LE R + + +G E LD A +SG + V A M GIKPD A + +I
Sbjct: 420 LEIRKEMVKEGIE--LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
GDV T L + M + + P TY+ ++G G + N A + G
Sbjct: 478 HGFCKKGDVKTGFKLLKEM-QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGV 536
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ TY L+ G K + + D+ E
Sbjct: 537 VPDDITYNILLEGHCKHGNREDFDKLQSE 565
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/243 (17%), Positives = 91/243 (37%), Gaps = 2/243 (0%)
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y P+ ++ + ++ + G V ++ +LI+G K+ + D
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
R MM + P + ++ GLC +LD + G N+ L+ +
Sbjct: 281 RLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGH 340
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C GR D E + + + P+V+ ++ +I L + + V M ++GL
Sbjct: 341 CVTGRADLGMEIYQQMLRKGVKPDVIT--YNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
++ L++ + +K +L + L++G+ R G + + +
Sbjct: 399 DKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTL 458
Query: 415 NEM 417
EM
Sbjct: 459 REM 461
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 5/243 (2%)
Query: 112 ACLIALSGKVQNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC + L V+ F + ++ M + G+ P F +LI C GD++ A +F+ M
Sbjct: 149 ACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEM 208
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P Y I G S ++ + A G NV TY +L+ G K +
Sbjct: 209 -RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN 267
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
R Y++M+ G++P + +++GLC ++ ++ ++ N +
Sbjct: 268 AKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNS 327
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ YC++G V E L + SP+V +S +IR R ++ +M K
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFT--YSILIRGLCSVSRTEEAGNIFEKMTK 385
Query: 350 QGL 352
+G+
Sbjct: 386 EGI 388
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI V A ++F M +GI +S +NSLI C G + AL + M
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM- 418
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN T+ I G+ + N+ A Y+ + S +V TY ++I G K
Sbjct: 419 TENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSM 478
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ Y +M+ GI P+ + +L+GLC K+
Sbjct: 479 KEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKI 513
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV +V AM +F +E + PD ++ LI A ++FE M
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM- 383
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E NS TY++ I G G +D + + G NV T+ +LI G K R+
Sbjct: 384 TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNL 443
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y EM+ + P + +++G C + +L G N L
Sbjct: 444 QAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCL 503
Query: 291 VKCYCELGRV-DELE---EQLETLT-KCN 314
+ C+ G++ D LE E++E T +CN
Sbjct: 504 LDGLCKDGKISDALELFTEKIEFQTPRCN 532
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G ++ +Q L++ +K F+ + R YEEM+S G+ PS+ +++G C + L R
Sbjct: 141 VGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLR 200
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ + G + L++ C +++E E + + P V
Sbjct: 201 AQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 39/296 (13%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM +F M+ +G KP ++ FN+LI +G L L ++M E KPN +T+
Sbjct: 156 NVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTF 215
Query: 183 DAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
++ I + + + +A N Y A+G +V TY +L + + + EM
Sbjct: 216 NSLIRAWCNKKRITEAWNVVYKM-AASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQ 274
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ ++P+ ++ G C K+ FL + G N + L+K + ++ D
Sbjct: 275 NNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTD 334
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
++E L + + P+V+ FS I+ ++ SVG M K
Sbjct: 335 GVDEALTLMEEFGVKPDVVT--FSTIMNAWS----------SVGLMDK------------ 370
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
C ++F D +K + + L GY RAG K +S++ M
Sbjct: 371 ---CQ----------EIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAM 413
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 7/221 (3%)
Query: 101 LKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
++ N +E C I ++G K + A+ M G+ P+ +FNSLI L D
Sbjct: 273 MQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFL---D 329
Query: 159 VVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+ + E + EE+ KP+ T+ ++ +SS+G +D + + + AG ++
Sbjct: 330 ITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHA 389
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ L G ++A + + + M G+ P++ I ++ G C+ K++ + +
Sbjct: 390 FSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMC 449
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G N + L+ Y E + EE L+ + + +P
Sbjct: 450 EMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAP 490
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
T ME G+KPD F++++ A G + +F+ MV + +P+ + G
Sbjct: 338 EALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAG-IEPDIHAFSILAKG 396
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G + A +G NV + ++I G A + R YE+M +GI P+
Sbjct: 397 YVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPN 456
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ E ++ G ++ + + L+ + G ++ Q + + LG +E
Sbjct: 457 LKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANE 510
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 99/263 (37%), Gaps = 40/263 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +V M A G++PD +N+L A +G+ A + + + + PN +T I
Sbjct: 231 AWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMI-LEMQNNRVMPNERTCGIII 289
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR---------- 235
+G+ G + DA+ Y G N+ + SLI G L D D VD
Sbjct: 290 NGYCKEGKMKDALRFLYRMR-NYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGV 348
Query: 236 -------------------------FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+++M+ GI P I + +G + ++ +S
Sbjct: 349 KPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAES 408
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
L + G + N + ++ +C G+++ E + + P L F +I
Sbjct: 409 LLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPN--LKTFETLIWG 466
Query: 331 YALSDRLDDVEYSVGRMGKQGLS 353
Y + E + M ++G++
Sbjct: 467 YGEAKEPQKAEELLQIMEQKGVA 489
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 166/401 (41%), Gaps = 38/401 (9%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ KG + L
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL---IDRMVAKGCQPDLVT 223
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A ++ ME ++P ++N++I + AL+LF+ M
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY + IS + G ++ + I + +V T+ +LI +K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I PSI ++ G C +LD K +F++ + L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 291 VKCYCELGRVDELEEQLETLTK----------------------CNQSPEVLLHFFS-GI 327
+K +C+ RV+E E +++ C+ + E+ S G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSY-----FRCAA---YDRLD 377
+ L D G++ K + F+ + +E I +Y C A D D
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + K Y+ +++G+ R G + D++ EMK
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + +P A+ V M G +P+ +SL+ S + A++L + M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y+PN+ T++ I G +A G ++ TY +++G K D
Sbjct: 179 VTG-YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M + P + I +++GLC + +D + K + G + N L
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P+V FS +I + +L + E M K+
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFT--FSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 351 GL 352
+
Sbjct: 356 SI 357
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 479 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 534
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 595 KEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 629
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 6/213 (2%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++F SM +GI + N LI A G + A+ +F M + +PN TY IS
Sbjct: 393 NLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM-QGQGVRPNVVTYSTLISA 451
Query: 189 FSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII- 246
F +G + DAM K ++ I+ G N Y SLIHG D F EMMS G+
Sbjct: 452 FCRMGRLADAMEK-FSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHR 510
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I ++ LC ++ + ++ G + L+ YC +G++++
Sbjct: 511 PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 570
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L+ + P+V+ + + ++ Y S ++DD
Sbjct: 571 LDAMVSVGIEPDVVTN--NTLVSGYCKSGKIDD 601
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 3/223 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G++PD +N++I CSG + +F M +S+ P++ T+ +F+S
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKM-TSKGLIPDTVTFSSFMSSL 347
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G + + G ++ +Y L+HG F ++ + M GI+ +
Sbjct: 348 CKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNC 407
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ ++ R +D + G G + N L+ +C +GR+ + E+
Sbjct: 408 HCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQ 467
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P + + +I + + L + + M +GL
Sbjct: 468 MISIGIEPNTAV--YHSLIHGFCMHGDLVKAKEFISEMMSKGL 508
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 10/225 (4%)
Query: 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
S +D Y CL+ GK++ A V +M + GI+PD N+L+ SG + L L
Sbjct: 553 SLIDGY-CLV---GKMEK---AFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F M+ ++ KP + TY+ + G G A K + I +G +V++ TY+ L+ G
Sbjct: 606 FREMLH-KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLC 664
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ D + ++ ++ I IL ++ L R+ + + G N +
Sbjct: 665 RNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVS 724
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+++ + G V+E + ++ K +P L + IIR+
Sbjct: 725 TYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRL--LNDIIRM 767
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI+ ++ + AM F+ M + GI+P++AV++SLI GD+V A M+
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMM 504
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S ++PN + + I G V + I G + T+ SLI G
Sbjct: 505 SKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKM 564
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ + M+S+GI P + ++ G C K+D
Sbjct: 565 EKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKID 600
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 120/311 (38%), Gaps = 14/311 (4%)
Query: 56 KTTLDSVDIFAFNSSQFS-------WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL 108
K T ++VD+ S+ S ++ +I SL S + L + R+ K +G
Sbjct: 173 KRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAK--EGGRCSP 230
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D + + G K V A ++F M +G+ PD +NS++ A LC +
Sbjct: 231 DVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDA-LCKARAMDKAEFV 289
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ + +P+ TY+A I G+S G+ K + + G + T+ S + K
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCK 349
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ ++ M + G +P I +L G + + + + G N +
Sbjct: 350 HGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHC 409
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ + + G +DE + P V+ +S +I + RL D +
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVT--YSTLISAFCRMGRLADAMEKFSQ 467
Query: 347 MGKQGLSFKSA 357
M G+ +A
Sbjct: 468 MISIGIEPNTA 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 107/268 (39%), Gaps = 7/268 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISGFSSLGNVDAMN 199
PD+ +N++I + AL + + M P+ +++ I GF G V
Sbjct: 193 PDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 252
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + G +V TY S++ KAR D + +M+ G+ P ++ G
Sbjct: 253 NLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGY 312
Query: 260 -CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C+ + K F K + G + + C+ GR + EE + +T P+
Sbjct: 313 SCSGHWKESAKMFRK-MTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPD 371
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
++ +S ++ YA R D+ M +G+ + + ++I ++ + D L
Sbjct: 372 IV--SYSILLHGYATEGRFADMNNLFHSMADKGI-VSNCHCINILISAHAKRGMMDEAML 428
Query: 379 FLDHIKG-SYKLRRATYDFLVAGYRRAG 405
++G + TY L++ + R G
Sbjct: 429 VFTEMQGQGVRPNVVTYSTLISAFCRMG 456
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I +SG K N+P A+ M+ G+ P+ VFNSLI L D +
Sbjct: 232 NERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYL---DTTDTNGVD 288
Query: 167 EIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E + EE+ KP+ T+ ++ +SS G ++ + + + AG ++ Y L G
Sbjct: 289 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGY 348
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A + M G+ P++ I ++ G CA K+DR + + G N
Sbjct: 349 VRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNL 408
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ L+ Y E + + EE L T+ + PE+
Sbjct: 409 KTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEM 443
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 126/320 (39%), Gaps = 40/320 (12%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D +K + L+ + SGKV AM +F M+ G KP ++ +N+LI +G
Sbjct: 85 DNGMKPDSILLNAMINAFSESGKVDE---AMKIFQKMKEYGCKPTTSTYNTLIKGFGIAG 141
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
++ L E+M E KPN +TY+ I + + ++ +A+G +V TY
Sbjct: 142 RPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTY 201
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
++ + + + +R +M + P+ ++ G C + FL +
Sbjct: 202 NTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKE 261
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G N + L+K Y + + ++E L + + P+V+ FS I+ ++ + +
Sbjct: 262 LGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVT--FSTIMNAWSSAGLM 319
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFL 397
++ E ++F D +K + Y L
Sbjct: 320 ENCE-----------------------------------EIFNDMVKAGIEPDIHAYSIL 344
Query: 398 VAGYRRAGLSGKLDSVINEM 417
GY RAG K ++++ M
Sbjct: 345 AKGYVRAGQPRKAEALLTSM 364
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +V M A GI+PD +N++ A +G+ A L + + KPN +T I
Sbjct: 182 AWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLI-LKMPYNIVKPNERTCGIII 240
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG+ GN+ ++ G N + SLI G L D + VD M GI
Sbjct: 241 SGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIK 300
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ + ++ + ++ G + + + L K Y G+ + E
Sbjct: 301 PDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEAL 360
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L +++K P V++ F+ II + + ++D +M + G S
Sbjct: 361 LTSMSKYGVQPNVVI--FTTIISGWCAAGKMDRAFRLCEKMHEMGTS 405
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M GI+PD ++ L + +G A +L M S +PN + ISG
Sbjct: 324 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSM-SKYGVQPNVVIFTTIISG 382
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + G +D + G S N++TYE+LI G +A+ + M G++P
Sbjct: 383 WCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPE 442
Query: 249 IPILEKV 255
+ ++ V
Sbjct: 443 MSTMQLV 449
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 5/235 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++ALI L + S ++A+ VL+ L L N + + ++ S + ++V A V
Sbjct: 295 FTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNP---MLVESCRKEDVWEAERV 351
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M +G+ PD F+S++ +G++ AL+ FE M P++ Y I+G+
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM-KGVGLVPDTVIYTILINGYC 410
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+V K + G ++V TY +L++G + + D D ++EM+ G+ P
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFY 470
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
L ++ G C + + S + + K + L+ +C++G +++ +E
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKE 525
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 10/289 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+ NV + + ME +G+ D +N+L+ A G V A L + M + + KP
Sbjct: 238 GKLDNVGVYL---SEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCM-AGKGLKPG 293
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+A I+G G+ + + + G N T+ ++ S + D +R +
Sbjct: 294 LFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFN 353
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G++P + ++ +L R ++ + + G G + + L+ YC
Sbjct: 354 EMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC--- 410
Query: 299 RVDELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
R D++ L+ + + V+ + ++ ++ LDD + M ++G+ F
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV-FPDF 469
Query: 358 EDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ +I Y + + L LF S K TY+ L+ G+ + G
Sbjct: 470 YTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVG 518
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A+ +F +M + +KPD +N+L+ G++ A L+ M+S E + P+ ++
Sbjct: 484 NMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIF-PSYISF 542
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I+GF SLG V + + G + T ++I G L+A + + F M+S
Sbjct: 543 SILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMIS 602
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P ++ DR + + G N ++ + GR+ E
Sbjct: 603 EGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQE 662
Query: 303 LEEQLETLTKCNQSPE 318
E L + +P+
Sbjct: 663 AEMVLHKMIDKGINPD 678
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G+ PD +LI G++ ALSLFE M + KP+ TY+ +
Sbjct: 453 ADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETM-TLRSLKPDVVTYNTLM 511
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +G ++ + + I+ + ++ LI+G R ++EM GI
Sbjct: 512 DGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIK 571
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P++ +++G L + FL ++ G
Sbjct: 572 PTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ N+ A +M ++G+ PD +N+LI + + + A L M PN
Sbjct: 586 RAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNM-EERGLLPNL 644
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + GFS G + I G + + TY SLI+G + + R ++E
Sbjct: 645 VTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDE 704
Query: 240 MMSLGIIP 247
M+ G +P
Sbjct: 705 MLQRGFVP 712
>gi|297842697|ref|XP_002889230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335071|gb|EFH65489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 580
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ V M + GI PD++ + L+ G+V A+ L E M + N+
Sbjct: 121 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKM-EDHGFPSNT 179
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G LG+++ ++ + G + N TY L+ + K R D + +E
Sbjct: 180 VTYNALVRGLCMLGSLNQSLQFVERLMQRGLAPNAFTYSFLLEAAYKERGTDQAVKLLDE 239
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+++ G P++ +L G C + D + L G+K N L++C C GR
Sbjct: 240 IIAKGGQPNLVSYNVLLTGFCKEGRTDDAMKLFRELPVKGFKANVVSYNILLRCLCCDGR 299
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
DE L + +++P V+ +
Sbjct: 300 WDEANSLLAEMDGGDRAPSVVTY 322
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 7/214 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + ++ ++ A I +L + K +
Sbjct: 356 TATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYSA-IGALCEHNGKVQE---A 411
Query: 95 WRLDKMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + + L + C D Y +I + N A + M G PD+ +++LI
Sbjct: 412 FYIIQSLSNKQKCCTHDFYKSVITSMCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRG 471
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G + A+ + IM SE +KP ++A I G + D + + +
Sbjct: 472 LCLEGMFIGAMEVLSIMEESEYHKPTVDNFNAMILGLCKIRRTDLALEVFEMMVGKKRMP 531
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
N TY ++ G + + EE+ S +I
Sbjct: 532 NETTYAIIVEGIAHEDELELAKEVLEELRSRKVI 565
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 40/252 (15%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
KKA V+E + + + S Y L+ K NV +AM + ME G ++ +
Sbjct: 126 KKAIRVIELMVSSGIIPDASA---YTYLVNQLCKRGNVGYAMQLVEKMEDHGFPSNTVTY 182
Query: 147 NSLICACLCSGDVVTALSLFEIMVS----------------------------------S 172
N+L+ G + +L E ++ +
Sbjct: 183 NALVRGLCMLGSLNQSLQFVERLMQRGLAPNAFTYSFLLEAAYKERGTDQAVKLLDEIIA 242
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ +PN +Y+ ++GF G D K + GF NV +Y L+ +D
Sbjct: 243 KGGQPNLVSYNVLLTGFCKEGRTDDAMKLFRELPVKGFKANVVSYNILLRCLCCDGRWDE 302
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG---WKINENMAQK 289
+ EM PS+ ++ L + ++ LK + G +++
Sbjct: 303 ANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQAMQVLKEMSKGHHHQFRVTATSYNP 362
Query: 290 LVKCYCELGRVD 301
++ C+ G+VD
Sbjct: 363 VIARLCKEGKVD 374
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 3/220 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+Q + FA V + G +P+ A FN+LI G + L LF+ M+ E ++PN
Sbjct: 106 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG-EGFQPNV 164
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G +G+ A + + +V Y S+I K R + E
Sbjct: 165 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 224
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI PSI ++ LC + V + L ++ N + +V C+ G+
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 284
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
V E + ++ + K P V+ ++ ++ + L +D+
Sbjct: 285 VMEAHDVVDMMIKRGVEPNVVT--YNALMDGHCLRSEMDE 322
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 43/328 (13%)
Query: 33 NSTSVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQL 91
+ ++++ N LI L ++ + ++ D + F + ++ LI L A +
Sbjct: 125 HQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI 184
Query: 92 VLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L L M +GN + + Y +I K + V A ++F+ M QGI P +NSLI
Sbjct: 185 RL---LRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLI 241
Query: 151 CAC--LCSGDVVTAL-------------SLFEIMVSS-------------------EEYK 176
A LC VTAL +F +V + +
Sbjct: 242 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 301
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+A + G +D K + + GF+ +V +Y +LI+G K + +
Sbjct: 302 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 361
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCY- 294
+EEM +IP+ ++ GLC +L D + F + + G +I + ++ ++ Y
Sbjct: 362 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG--QIPDFVSYCILLDYL 419
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ R+DE L+ + N P++ ++
Sbjct: 420 CKNRRLDEAIALLKAIEGSNMDPDIQIY 447
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 5/255 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+ S F++++LI +L + K +L ++ + N + GKV
Sbjct: 229 GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVME- 287
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A V M +G++P+ +N+L+ ++ A+ +F+ MV + + P+ +Y
Sbjct: 288 --AHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC-KGFAPDVVSYST 344
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G+ + ++ + N TY +L+HG + EM++ G
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
IP +L+ LC R+LD + LK + G + + ++ C G ++
Sbjct: 405 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 464
Query: 305 EQLETLTKCNQSPEV 319
+ L+ P V
Sbjct: 465 DLFSNLSSKGLHPNV 479
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 1/191 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF +M +G PD +++LI + A+ LFE M +E PN+ TY +
Sbjct: 323 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR-KELIPNTVTYSTLM 381
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + + G + +Y L+ K R D + + +
Sbjct: 382 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMD 441
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I I V++G+C +L+ + L G N ++ C+ G + E +
Sbjct: 442 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 501
Query: 307 LETLTKCNQSP 317
+ + SP
Sbjct: 502 FGEMKRKGYSP 512
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + ++E + PD ++ +I +G++ A LF + SS+ PN TY I
Sbjct: 428 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMI 486
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+G G + +K + G+S N TY + G L+ + + +EM++ G
Sbjct: 487 NGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG 544
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 2/198 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDA 184
A+ +F SM A+G D+ ++N ++ + AL++ E ++ + K P+S DA
Sbjct: 497 AIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDA 556
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ +G D + GF+ V +Y L+ G + + +D + +E M+S G
Sbjct: 557 LVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAG 616
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P I + V+ LC+ K+D ++ + G + L+ YC+ GR D
Sbjct: 617 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 676
Query: 305 EQLETLTKCNQSPEVLLH 322
+ LE +T+ P H
Sbjct: 677 KLLEEMTEAGLEPNDTTH 694
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 8/244 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K A + M AQG PD+ F++LI G A + E ++
Sbjct: 129 YTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVI 188
Query: 171 SSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ ++ I + N V+ +K IA GF+ V + +I+G KA+D
Sbjct: 189 QRGMGNSDA-AFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKD 247
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
DS + E M+ G +P++ ++ GLC ++ + L+ ++ GG N
Sbjct: 248 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYST 307
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRM 347
++ C+ G+VD+ E + + + N P V+ H G+ + + R+++ RM
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK----AKRIEEARQLYHRM 363
Query: 348 GKQG 351
+ G
Sbjct: 364 RETG 367
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L K +V A V + A+G P +FN +I + D+ +A L E+M+ +
Sbjct: 206 LCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIE-KGCV 264
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T+ I+G V + + G S NV TY ++I+G K D
Sbjct: 265 PNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYEL 324
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++ M P++ +++GLC ++++ + + G + L+ C+
Sbjct: 325 FQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 384
Query: 297 LGRVDELEEQLETLTKCNQSP------EVLLHFFSGIIRL 330
+VDE + +T+ + S L H ++ + R+
Sbjct: 385 SFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRM 424
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A ++ M G PD +NSLI S V A LF+ + S N+
Sbjct: 349 KAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANA 408
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY G+++LG + + ++ + GFS ++ TY SLI K V EE
Sbjct: 409 VTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEE 468
Query: 240 MMSLGIIPSIPILEKVLEGL 259
M S G P + L VL GL
Sbjct: 469 MASKGFPPRVNTLSAVLGGL 488
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 8/176 (4%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
P+ L +W ++ SC C + + ++ A+ +F + A+ P+
Sbjct: 4 PELVLLFFDWARSRVGHNVFSC----NCALDMLCRLNRRQEALALFRNAMARICMPNKFT 59
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAA 204
+ LI +GD+ A+ L E M SS ++ N+ + + G G V +A+ + A
Sbjct: 60 YGILIRGFSSAGDLDIAIQLLEEMKSSG-FEGNAVVHTTLMKGLCDAGRVVEALEHFRA- 117
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+A + +V TY +L+H KA FD EM++ G P +++GLC
Sbjct: 118 -MAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLC 172
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+++ MEA IK + +FN++I + V A+ LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I+ + G ++ + + + NV T+ +LI K
Sbjct: 285 ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ +EEM+ I P ++ G C +LD K KF++ N L
Sbjct: 345 VEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ +C+ RV++ E +++
Sbjct: 405 INGFCKCKRVEDGVELFREMSQ 426
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + I PD+ +N LI + A +F+ MVS ++ PN +TY+ I+GF
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCK 412
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + + G N TY ++I G +A D DS +++M+S + I
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L GLC+ KLD K+L ++N + +++ C+ G+V E
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 2/198 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDA 184
A+ +F SM A+G D+ ++N ++ + AL++ E ++ + K P+S DA
Sbjct: 449 AIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDA 508
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ +G D + GF+ V +Y L+ G + + +D + +E M+S G
Sbjct: 509 LVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAG 568
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P I + V+ LC+ K+D ++ + G + L+ YC+ GR D
Sbjct: 569 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 628
Query: 305 EQLETLTKCNQSPEVLLH 322
+ LE +T+ P H
Sbjct: 629 KLLEEMTEAGLEPNDTTH 646
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K A + M A+G PD+ F++LI G A + E ++
Sbjct: 81 YTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVI 140
Query: 171 SSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ ++ I + N V+ +K IA GF+ V + +I+G KA+D
Sbjct: 141 QRGMGNSDA-AFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKD 199
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
DS + E M+ G +P++ ++ GLC ++ + L+ ++ GG N
Sbjct: 200 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYST 259
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C+ G+VD+ E + + + N P V+ H
Sbjct: 260 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 292
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L K +V A V + A+G P +FN +I + D+ +A L E+M+ +
Sbjct: 158 LCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIE-KGCV 216
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T+ I+G V + + G S NV TY ++I+G K D
Sbjct: 217 PNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYEL 276
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++ M P++ +++GLC ++++ + + G + L+ C+
Sbjct: 277 FQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCK 336
Query: 297 LGRVDELEEQLETLTKCNQSP------EVLLHFFSGIIRL 330
+VDE + +T+ + S L H ++ + R+
Sbjct: 337 SFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRM 376
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A ++ M G PD +NSLI S V A LF+ + S N+
Sbjct: 301 KAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANA 360
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY G+++LG + + ++ + GFS ++ TY SLI K V EE
Sbjct: 361 VTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEE 420
Query: 240 MMSLGIIPSIPILEKVLEGL 259
M S G P + L VL GL
Sbjct: 421 MASKGFPPRVNTLSAVLGGL 440
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMN 199
P+ + LI +GD+ A+ L E M S ++ N+ + + G G V +A+
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEM-KSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A +A + +V TY +L+H KA FD EM++ G P +++GL
Sbjct: 66 HFRA--MAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123
Query: 260 C 260
C
Sbjct: 124 C 124
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 3/220 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+Q + FA V + G +P+ A FN+LI G + L LF+ M+ E ++PN
Sbjct: 115 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG-EGFQPNV 173
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G +G+ A + + +V Y S+I K R + E
Sbjct: 174 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 233
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI PSI ++ LC + V + L ++ N + +V C+ G+
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 293
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
V E + ++ + K P V+ ++ ++ + L +D+
Sbjct: 294 VMEAHDVVDMMIKRGVEPNVVT--YNALMDGHCLRSEMDE 331
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 43/328 (13%)
Query: 33 NSTSVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQL 91
+ ++++ N LI L ++ + ++ D + F + ++ LI L A +
Sbjct: 134 HQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI 193
Query: 92 VLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L L M +GN + + Y +I K + V A ++F+ M QGI P +NSLI
Sbjct: 194 RL---LRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLI 250
Query: 151 CAC--LCSGDVVTAL-------------SLFEIMVSS-------------------EEYK 176
A LC VTAL +F +V + +
Sbjct: 251 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 310
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+A + G +D K + + GF+ +V +Y +LI+G K + +
Sbjct: 311 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 370
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCY- 294
+EEM +IP+ ++ GLC +L D + F + + G +I + ++ ++ Y
Sbjct: 371 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG--QIPDFVSYCILLDYL 428
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ R+DE L+ + N P++ ++
Sbjct: 429 CKNRRLDEAIALLKAIEGSNMDPDIQIY 456
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 5/255 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
+ S F++++LI +L + K +L ++ + N + GKV
Sbjct: 238 GISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVME- 296
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A V M +G++P+ +N+L+ ++ A+ +F+ MV + + P+ +Y
Sbjct: 297 --AHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC-KGFAPDVVSYST 353
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G+ + ++ + N TY +L+HG + EM++ G
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
IP +L+ LC R+LD + LK + G + + ++ C G ++
Sbjct: 414 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473
Query: 305 EQLETLTKCNQSPEV 319
+ L+ P V
Sbjct: 474 DLFSNLSSKGLHPNV 488
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 1/191 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF +M +G PD +++LI + A+ LFE M +E PN+ TY +
Sbjct: 332 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR-KELIPNTVTYSTLM 390
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + + G + +Y L+ K R D + + +
Sbjct: 391 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMD 450
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I I V++G+C +L+ + L G N ++ C+ G + E +
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 510
Query: 307 LETLTKCNQSP 317
+ + SP
Sbjct: 511 FGEMKRKGYSP 521
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + ++E + PD ++ +I +G++ A LF + SS+ PN TY I
Sbjct: 437 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL-SSKGLHPNVWTYTIMI 495
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+G G + +K + G+S N TY + G L+ + + +EM++ G
Sbjct: 496 NGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG 553
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 6/291 (2%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H S+E +PD + +LI G V A LF MV++ +PN+ TY+A + G
Sbjct: 32 HFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG 91
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+DA A F+ +V TY +L+ + D + +M G +P+
Sbjct: 92 LCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPT 151
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ ++ GLC R+L ++ + N ++ C+ ++DE ++ L+
Sbjct: 152 LVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLD 211
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICS 366
+ P+++ ++ ++ ++ + RLD + RM QG ++ +C
Sbjct: 212 RMVSEGCRPDLVA--YTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
R D ++F + + TY L+ GY RA + V+ EM
Sbjct: 270 VGR--VDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 318
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI K+ V A +F M A G +P++ +N+L+ LC D + A
Sbjct: 49 YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG-LCKQDRLDAARAVIAE 107
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ P+ TY+ ++ LG VD + G+ + ++ ++I G +AR
Sbjct: 108 ARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARR 167
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ EM+ P++ V++GLC +LD + L ++ G + +
Sbjct: 168 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 227
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
LV + GR+D L + P+V+ ++ +I R+DD
Sbjct: 228 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVT--YTVVIDKLCKVGRVDDAH 277
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 23/268 (8%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K QL+ E M KG Y+ +I V A +F M+ G+ PD +
Sbjct: 206 KAFQLIKEM----MRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI + +G + A LFE M S P TY A I + V N + +
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEM-RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 320
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG----------------IIPSIP 250
AG N TY +L+ G KA + Y +++ + P++
Sbjct: 321 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 380
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC K+D L +L G + N + L+ +C+ G++D +E +
Sbjct: 381 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLD 338
TKC P V H ++ +I RLD
Sbjct: 441 TKCGYLPSV--HTYTSLIDRMFKDGRLD 466
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 53/341 (15%)
Query: 94 EWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+W ++M G + Y LI K + VP A +F M G +P+ + +L+
Sbjct: 278 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 337
Query: 153 CLCSGDVVTALSLFEIMVSSEE---------------YKPNSKTYDAFISGFSSLGNVDA 197
+G++ A ++ ++ + + PN TY A + G VD
Sbjct: 338 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 397
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ A +++G N Y++LI G KA DS + +M G +PS+ +++
Sbjct: 398 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLID 457
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ +LD L +L N ++ C +G ++ + L + + SP
Sbjct: 458 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 517
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
V+ + AL D L G+ GK LS LD
Sbjct: 518 NVVTY--------TALIDGL-------GKAGKIDLS----------------------LD 540
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + TY L+ AGL K ++ EMK
Sbjct: 541 LFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 581
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 17/246 (6%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG K + + + + M +G P+ ++FNSL+ + D A L M +
Sbjct: 84 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 142
Query: 175 YKPNSKTYDAFIS---GFSSLGNVDAMN---KWYAANIAAGF---SVNVQTYESLIHGSL 225
P Y+ FI G L + D ++ K Y +AA VNV + + G
Sbjct: 143 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 202
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K FD + +EMM G +P KV+ LC K+++ + + G +
Sbjct: 203 K---FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 259
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C+ G +++ + E + SP V+ ++ +I Y + ++
Sbjct: 260 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT--YTALIHAYLKAKQVPQANDIFH 317
Query: 346 RMGKQG 351
RM G
Sbjct: 318 RMVDAG 323
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 107/290 (36%), Gaps = 35/290 (12%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD ML G E Y LI K + A VF M G P + SLI
Sbjct: 402 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 461
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A+ + M+ + PN TY A I G +G + K + G S NV
Sbjct: 462 DGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 520
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL--- 272
TY +LI G KA D + +M G P+ ++ LCA LD+ + L
Sbjct: 521 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEM 580
Query: 273 ------KFLLG-------------GGWKINENMAQ-----------KLVKCYCELGRVDE 302
K+L G I E M L+ C+ + GR++
Sbjct: 581 KQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEI 640
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E + + + S + ++ +I+ L+ ++++ M ++G
Sbjct: 641 AMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGF 690
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 36/201 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI GK + ++ +FT M +G P+ + LI LC+ ++
Sbjct: 513 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH-LCAAGLLD 571
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFS-----SLGNVDAMNKWYAANIAAGFSV---- 212
L + + + Y I GFS SLG ++ M + IA + +
Sbjct: 572 KARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDC 631
Query: 213 ----------------------NVQT----YESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+V+T Y SLI A + R Y EM G +
Sbjct: 632 FSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFV 691
Query: 247 PSIPILEKVLEGLCARRKLDR 267
P + + +++GL +K D
Sbjct: 692 PELSVFVCLIKGLVEVKKWDE 712
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
F ++ +I G ++A FD F M IP++ +L G +++L K
Sbjct: 38 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 97
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFSGII 328
+ ++ G N ++ LV YC + L +T C P V+ + F G I
Sbjct: 98 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 157
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 148/355 (41%), Gaps = 25/355 (7%)
Query: 1 MALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLD 60
MA AC +L+ K+ + P + L+ +S+ + +N ++ ++++ V
Sbjct: 432 MAKACELLAEMKARKLTPSPFTYSVLISGL-CHSSDLQKANEVLDQMIRNGVK------- 483
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALS 118
+ F + LI + S + ++ +E L K++ N D Y CLI
Sbjct: 484 --------PNVFMYGTLIKAYVQES--RYEMAIE--LLKIMIANGVLPDLFCYNCLIIGL 531
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
+ + V A + M +GIKP++ + + I SG++ A F+ M+SS PN
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG-IVPN 590
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y I G +GN + + G +++ Y ++IH K +
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ + G++P + + ++ G C +++ +L G N + L+ C+LG
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLG 710
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
V + E + + + + P+V+ +S II Y S L + M +G+S
Sbjct: 711 EVTKARELFDEIEEKDLVPDVVT--YSTIIDGYCKSGNLTEAFKLFDEMISKGIS 763
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 11/284 (3%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++A I L Q+ + +A LE + M KG Y L+ K + A +
Sbjct: 277 FTYNAFIGGLCQTGAVDEA---LEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F SM + G+ P+ + +LI + G++ AL + + M++ K N TY+A I G +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMIT-RGLKLNVVTYNAMIGGIA 392
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + + + AG + TY LI G LK+ D EM + + PS
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GLC L + L ++ G K N M L+K Y + R + E L+ +
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512
Query: 311 TKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P++ + G+ R + ++++ + + MG++G+
Sbjct: 513 IANGVLPDLFCYNCLIIGLCR----AKKVEEAKMLLVDMGEKGI 552
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ SM I PD + ++I A GDV+ + M +E KPN TY+AFI G
Sbjct: 229 VYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGL 286
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G VD + + G + TY L+ G K + +E M S G+ P+
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+++G ++ ++ G K+N
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 2/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K ++ A ++ M GI P+ V+N+LI G+V A LF+ +
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFD-EI 722
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ P+ TY I G+ GN+ K + I+ G S + Y LI G K +
Sbjct: 723 EEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNL 782
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + E + S+ +++ C K+ + ++ N L
Sbjct: 783 EKALSLFHEAQQKS-VGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTIL 841
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ Y + ++E E+ + N P L +
Sbjct: 842 IDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 873
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 3/243 (1%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +D FI F LG ++ + + A+I+ GF + +L+ LKA + Y
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M+ I+P + V++ C + + K L + K N + C+
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS-EMEKECKPNLFTYNAFIGGLCQT 289
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G VDE E + + + P+ H ++ ++ + R + + M GL+
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDG--HTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ + L + + I KL TY+ ++ G +AG K S+ NEM
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407
Query: 418 KFA 420
A
Sbjct: 408 LMA 410
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 142/336 (42%), Gaps = 20/336 (5%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K+ + A+++ ME IKPD +++++I
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLW 163
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF I + + P+ TY I+GF S G + + S +V
Sbjct: 164 KDGRHTDAQNLF-IEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDV 222
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
T+ LI+ +K D +S +EM+S G+ P++ +L+GLC KL K
Sbjct: 223 VTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKA 282
Query: 275 LLGGGWKINE----NMAQKLVKCYCEL-------GRVDELEEQLETLTKCNQSPEVLLHF 323
+ I+ N + V+ Y L G+ E EE E + P+ +
Sbjct: 283 MQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT-- 340
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDH 382
+S +I RLD+ MG + S + +I Y + D L+LF +
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFS-PNIVTFNTLITGYCKAGMVDDGLELFCEM 399
Query: 383 IKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+ TY L+ G+R+ G ++G LD + EM
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLD-IFQEM 434
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 308 ILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM-GS 366
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T++ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 367 KSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNING 426
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L R + L+ L
Sbjct: 427 SLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 119/316 (37%), Gaps = 43/316 (13%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G P FN+L+ LC D V+ AL LF M KPN T+
Sbjct: 31 LPFALSTFGKLTKLGFHPTLVTFNTLLHG-LCVEDRVSEALDLFHQMC-----KPNVVTF 84
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G V + G N TY +++ G K D S +M
Sbjct: 85 TTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 144
Query: 243 LGII-PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
L I P + I +++GL + ++ + G + ++ +C G+
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS 204
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL--------- 352
E + L+ + SP+V+ FSG+I L+ + + M G+
Sbjct: 205 EAQRLLQEMLVRKISPDVVT--FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262
Query: 353 -------SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
S K + +EM F+ +D+ H + TY+ L++G
Sbjct: 263 LLDGLCDSGKLKDALEM-----FKAMQKSMMDIDATHAFNGVEPDVQTYNILISG----- 312
Query: 406 LSGKLDSVINEMKFAE 421
+INE KF E
Sbjct: 313 -------LINEGKFLE 321
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y LI K N+ A+ V M+ +GI+ D V+ +LI GD+V A L
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQ 670
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+ +S PN Y + ISGF L N++A + I G ++Q Y +LI G LK
Sbjct: 671 EVGLS-----PNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLK 725
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
Y EM++ GI+P + ++ GLC + +L+ + L+
Sbjct: 726 EGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILE 772
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 3/206 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +G+KP+ ++ L+ GD A L++ M E P+ T + I
Sbjct: 487 ANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRM-RGENIAPSDFTCNIII 545
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G + GF TY +I G +K +S Y EM +G+
Sbjct: 546 NGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVS 605
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ G C +D + + G +++ + L+ +C G + +
Sbjct: 606 PNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQL 665
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRL 330
L L + SP +++ SG +L
Sbjct: 666 LSELQEVGLSPNKVVYSSMISGFRKL 691
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 6/174 (3%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L+K LK N L Y+ L+ K + +A ++ M + I P N +I +
Sbjct: 495 LEKGLKPN---LITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKA 551
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + +V E + P TY+ I GF G+V++ Y G S NV T
Sbjct: 552 GRTSESQDRLKKLVQ-EGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFT 610
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
Y +LI+G K+ + D + +EM + GI + + +++G C RK D V +
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFC--RKGDMVNA 662
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I+ K+QN+ A+H+ M +GI D ++ +LI L G ++ A L+ M+
Sbjct: 681 YSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEML 740
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY I G + G ++ K + V Y +LI G K +
Sbjct: 741 A-KGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNL 799
Query: 231 DSVDRFYEEMMSLGIIP 247
R + EM+ G++P
Sbjct: 800 QEAFRLHNEMLDKGLVP 816
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 125/337 (37%), Gaps = 57/337 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-------------------C 151
YA +I K N+ A ++ M+ + I P NSLI
Sbjct: 367 YAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAV 426
Query: 152 AC--------------LC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
AC LC G + A S++E MV + +P+ +Y+ I G G++D
Sbjct: 427 ACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMV-RKGVRPSVVSYNNMILGHCQQGDMD 485
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ N + + G N+ TY L+ G K D + Y+ M I PS ++
Sbjct: 486 SANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIII 545
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC + + LK L+ G+ ++ + + G V+ + K S
Sbjct: 546 NGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVS 605
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P V ++ +I + S+ +D + M +G +E+ + Y CA D
Sbjct: 606 PNVFT--YTNLINGFCKSNNMDLALKVMDEMKNKG--------IELDVTVY--CALIDGF 653
Query: 377 DLFLDHIKGSYKL----------RRATYDFLVAGYRR 403
D + S L + Y +++G+R+
Sbjct: 654 CRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
Query: 140 KPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
KP + V + + C GD+ +AL LF+ M + PN+ TY I GN+D
Sbjct: 325 KPMNVVVATTLMKGYCKQGDLDSALELFDKM-NENGICPNNVTYAVIIEWCCKNGNMDKA 383
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ Y S V SLI G LKAR + + ++E ++ G I ++ +L
Sbjct: 384 YEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG-IANVFTYNSLLSW 442
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LC K+ S + ++ G + + ++ +C+ G +D
Sbjct: 443 LCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMD 485
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 6/190 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSA 144
KK + L ++G ++ C I ++G K + + +G P
Sbjct: 515 KKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCM 574
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N +I + G V +AL+++ M PN TY I+GF N+D K
Sbjct: 575 TYNCIIDGFVKEGSVNSALAVYTEMCKIG-VSPNVFTYTNLINGFCKSNNMDLALKVMDE 633
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G ++V Y +LI G + D + + E+ +G+ P+ + ++ G RK
Sbjct: 634 MKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGF---RK 690
Query: 265 LDRVKSFLKF 274
L +++ L
Sbjct: 691 LQNMEAALHL 700
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 6/177 (3%)
Query: 50 VPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
V SQ+ + L V + ++ + ++I+ + +A L L R+ + +G L
Sbjct: 660 VNASQLLSELQEV---GLSPNKVVYSSMISGFRKLQNMEAALHLHKRM--INEGIPCDLQ 714
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI+ K + FA ++ M A+GI PD ++ LI G + A + E M
Sbjct: 715 IYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ P Y+ I+G GN+ + + + G + TY+ L++G +K
Sbjct: 775 -DRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVK 830
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 119/292 (40%), Gaps = 40/292 (13%)
Query: 99 KMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
K + N+ C +E + G K +NV A F M+ QG+KP+ +NSLI +
Sbjct: 262 KEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNN 321
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS-------------------LGNVDA 197
G + A+ L++ MV KPN TY+A I+GF + NV
Sbjct: 322 GKLEEAIDLWDKMVGLG-LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVIT 380
Query: 198 MNKWYAAN-----IAAGFSV-----------NVQTYESLIHGSLKARDFDSVDRFYEEMM 241
N A + GFS+ NV TY LI G + +D + EM
Sbjct: 381 FNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEME 440
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G+ + +++GLC K + L + G K N L+ YC G++
Sbjct: 441 NKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLK 500
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ K + P V+ ++ +I+ Y ++L+ + M ++GL+
Sbjct: 501 AALNVRTRMEKERKQPNVVT--YNVLIKGYCKINKLEAANGLLNEMLEKGLN 550
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 8/242 (3%)
Query: 65 FAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
+ F S S + L+++L + + + V + + + + N + + + + +GK+
Sbjct: 159 YGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNK 218
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
A+ M+A GI P+ +N+L+ C +G + A + + M++++ PN
Sbjct: 219 AEDAIE---DMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK-ICPNEV 274
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T++ I GF NV A K + G N+ TY SLI+G + +++M
Sbjct: 275 TFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM 334
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ LG+ P+I ++ G C ++ + + N ++ YC+ G +
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394
Query: 301 DE 302
+E
Sbjct: 395 EE 396
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 6/206 (2%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+V+ M + I + FN I +G + A E M + PN TY+ + G
Sbjct: 186 YVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDM-KAWGISPNVVTYNTLVDG 244
Query: 189 FSSLGNVDAMNKWYA---ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G+ M K A +A N T+ +LI G K + + + +EEM G+
Sbjct: 245 YCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGL 304
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+I ++ GLC KL+ ++G G K N L+ +C+ + E +
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLY 331
+ ++K P V+ F+ +I Y
Sbjct: 365 VFDDVSKQELVPNVIT--FNTMIDAY 388
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 121/283 (42%), Gaps = 14/283 (4%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVL 93
S++S NPL+S L+ + + ++ + +++ +++ I L ++ KA+ +
Sbjct: 164 SLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAI 223
Query: 94 E----WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
E W + + + +D Y C +GK+ M M A I P+ FN+L
Sbjct: 224 EDMKAWGISPNVVTYNTLVDGY-CKRGSAGKMYKAEAFMK---EMLANKICPNEVTFNTL 279
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I +V A FE M + KPN TY++ I+G + G ++ + + G
Sbjct: 280 IDGFCKDENVAAAKKAFEEM-QKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG 338
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
N+ TY +LI+G K + + ++++ ++P++ +++ C ++
Sbjct: 339 LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYC---ELGRVDELEEQLET 309
S +L G N + L+ C +L EL ++E
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMEN 441
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y CLIA + Q++ A + ME +G+K D +N LI LC D A L M
Sbjct: 416 YNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG-LCKNDKSRNAEKLLNEM 474
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-----SVNVQTYESLIHGS 224
+ KPN TY+ + G+ G + A A N+ NV TY LI G
Sbjct: 475 FNL-GLKPNHVTYNTLMDGYCMEGKLKA-----ALNVRTRMEKERKQPNVVTYNVLIKGY 528
Query: 225 LKARDFDSVDRFYEEMMSLGIIPS 248
K ++ + EM+ G+ P+
Sbjct: 529 CKINKLEAANGLLNEMLEKGLNPN 552
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ LI L + + A+ +L +K LKG+ + Y LI K A +
Sbjct: 415 TYNCLIAGLCRKQDLQAAKELLNEMENKGLKGD---VVTYNILIDGLCKNDKSRNAEKLL 471
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M G+KP+ +N+L+ G + AL++ M E +PN TY+ I G+
Sbjct: 472 NEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRM-EKERKQPNVVTYNVLIKGYCK 530
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ ++A N + G + N TY+
Sbjct: 531 INKLEAANGLLNEMLEKGLNPNRTTYD 557
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 13/280 (4%)
Query: 77 LIT--SLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFT 132
LIT SL + + L +RL ++K D+ Y C I K V A +F
Sbjct: 327 LITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFD 386
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
S+ +G+ + +++ LI G V A LFE M+S + PN+ T++A I G S
Sbjct: 387 SLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS-KNCSPNAYTFNALIHGLCSA 445
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
GN+ + + G V T+ LI LK DFD + ++MMS G P
Sbjct: 446 GNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTY 505
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+E C+ K+ + + + G ++ L+K Y +LG + L+++
Sbjct: 506 NAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFD 565
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ P H F +I+ +L D Y V + G+ G+
Sbjct: 566 ADCEPS--HHTFLSLIK------QLFDKRYVVEKSGETGV 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 6/261 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ ALI L + KA +L+ L++ L + L Y LIA + ++ A +
Sbjct: 294 YTYTALIKGLCRKNVHKAMGLLDEMLERNLVPD---LITYNSLIAGQCRAGHLDSAYRLL 350
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+ M+ +G+ PD + I S V A LF+ + + E N Y I G+
Sbjct: 351 SLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSL-TEEGVSANVIMYSVLIDGYCK 409
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G VD + ++ S N T+ +LIHG A + +++M+ +G+ P++
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYT 469
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ + + D L+ ++ G K ++ YC G+V E E+ + +
Sbjct: 470 FNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMK 529
Query: 312 KCNQSPEVLLHFFSGIIRLYA 332
+ P+ ++ +I+ Y
Sbjct: 530 EEGVPPDDFT--YTSLIKAYG 548
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 108/290 (37%), Gaps = 35/290 (12%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
++++ALI L S+ K L L D+M+K G + + + LI K + A
Sbjct: 433 YTFNALIHGLCSAGNLKEALSL---FDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKC 489
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M + G KP + +N+ I CS V + + E P+ TY + I +
Sbjct: 490 LQKMMSSGEKPVARTYNAFI-EVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYG 548
Query: 191 SLG----NVDAMNKWYAANIAAGFSVNVQTYESL-----------------------IHG 223
LG D + + A+ + + L + G
Sbjct: 549 KLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPG 608
Query: 224 S--LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
S K +FD V +EEM G P EK++ G+C L L + G
Sbjct: 609 SNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGIS 668
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+E + ++ C C+L + E +E + SP+ L H + I LY
Sbjct: 669 PSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQ-LEHCKTLICGLY 717
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ KV+N+ A+ + M+ +GI P VFN++I C A ++ E M+
Sbjct: 639 YEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMI 698
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P + I G G + N + G++ + ++ LI G LK
Sbjct: 699 CS-GHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLV 757
Query: 231 DSVDRFYEEMMSLG 244
+ + +EEM G
Sbjct: 758 EEFSQLFEEMEKNG 771
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D+V + LFE M P+SK Y+ ISG + N+ K G S + +
Sbjct: 618 DIV--IELFEEM-EKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVF 674
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
++I K + + E+M+ G P + + ++ GL + +R S K L G
Sbjct: 675 NAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRG 734
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSP 317
G+ +E + L+ + G V+E + E + K CN SP
Sbjct: 735 CGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSP 776
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 19/195 (9%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D YA L+ L + V + SM A+F S IC + S D +T LSL
Sbjct: 101 VDSYASLLTLIDHHKIVSDVPKIIVSMIKCCYSAPDALFVSDICRKM-SKDDITKLSL-- 157
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
K Y+ ++ + G VD MN+ Y + S+++ T+ +I+ K
Sbjct: 158 ------------KCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKM 205
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+F +M+ G+ P + G C + +D + + NE
Sbjct: 206 GFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSY 261
Query: 288 QKLVKCYCELGRVDE 302
+L+ CE GR+DE
Sbjct: 262 NQLIHGLCEAGRIDE 276
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 142/336 (42%), Gaps = 20/336 (5%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K+ + A+++ ME IKPD +++++I
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLW 163
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF I + + P+ TY I+GF S G + + S +V
Sbjct: 164 KDGRHTDAQNLF-IEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDV 222
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
T+ LI+ +K D +S +EM+S G+ P++ +L+GLC KL K
Sbjct: 223 VTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKA 282
Query: 275 LLGGGWKINE----NMAQKLVKCYCEL-------GRVDELEEQLETLTKCNQSPEVLLHF 323
+ I+ N + V+ Y L G+ E EE E + P+ +
Sbjct: 283 MQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT-- 340
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDH 382
+S +I RLD+ MG + S + +I Y + D L+LF +
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFS-PNIVTFNTLITGYCKAGMVDDGLELFCEM 399
Query: 383 IKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVINEM 417
+ TY L+ G+R+ G ++G LD + EM
Sbjct: 400 GRRGIVANAITYITLIRGFRKVGNINGSLD-IFQEM 434
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 115 IALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I +SG + F A ++ M +GI PD+ ++S+I + A +F+ M S
Sbjct: 308 ILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM-GS 366
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + PN T++ I+G+ G VD + + G N TY +LI G K + +
Sbjct: 367 KSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNING 426
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++EM+S G+ P + +L GL ++ +L + + L+ L
Sbjct: 427 SLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 119/316 (37%), Gaps = 43/316 (13%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G P FN+L+ LC D V+ AL LF M KPN T+
Sbjct: 31 LPFALSTFGKLTKLGFHPTLVTFNTLLHG-LCVEDRVSEALDLFHQMC-----KPNVVTF 84
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G V + G N TY +++ G K D S +M
Sbjct: 85 TTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 144
Query: 243 LGII-PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
L I P + I +++GL + ++ + G + ++ +C G+
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS 204
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL--------- 352
E + L+ + SP+V+ FSG+I L+ + + M G+
Sbjct: 205 EAQRLLQEMLVRKISPDVVT--FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262
Query: 353 -------SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
S K + +EM F+ +D+ H + TY+ L++G
Sbjct: 263 LLDGLCDSGKLKDALEM-----FKAMQKSMMDIDATHAFNGVEPDVQTYNILISG----- 312
Query: 406 LSGKLDSVINEMKFAE 421
+INE KF E
Sbjct: 313 -------LINEGKFLE 321
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 1/190 (0%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
S+E G++PD +N+LI +G + A L E MVS KPNS +Y+ + G+
Sbjct: 160 SIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG-LKPNSFSYNTLLHGYCKA 218
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G +D+ + ++ G + V TY +++HG + + F Y M++ G I
Sbjct: 219 GRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTY 278
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L GLC +D + L G ++N ++ + GR ++ + +
Sbjct: 279 NTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPA 338
Query: 313 CNQSPEVLLH 322
P+V+ +
Sbjct: 339 NGLVPDVVTY 348
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 115/275 (41%), Gaps = 6/275 (2%)
Query: 128 MH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH + M A GI P+ +FN A G + A+ +F M P++ +Y A I
Sbjct: 14 MHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKM-RQHGLSPDAVSYGALI 72
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + I G + N+ + SL++G ++ V+ + EM+++GI
Sbjct: 73 DALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIH 132
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L LC ++ + + + G + + L+ +C G +DE +
Sbjct: 133 PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 192
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE + P ++ ++ Y + R+D +M G++ ++
Sbjct: 193 LEGMVSVGLKPNSF--SYNTLLHGYCKAGRIDSAYSLFRKMLSNGIT-PGVVTYNTILHG 249
Query: 367 YFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAG 400
F+ + +L+L+ I K TY+ ++ G
Sbjct: 250 LFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNG 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M GI P+ FN+++C G V+ L + + +P+ +Y+ I G
Sbjct: 122 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVD-SIECMGVRPDVISYNTLIDGH 180
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G +D +K ++ G N +Y +L+HG KA DS + +M+S GI P +
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGV 240
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L GL ++ K ++ G K ++ C+ VDE + ++
Sbjct: 241 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQS 300
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L C++ ++ + F+ +I R +D
Sbjct: 301 L--CSKGLQLNIITFTIMIGALLKGGRKED 328
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 15/237 (6%)
Query: 80 SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
+L PK A+ V+ D + + ++ L+ GK + A F SM A GI
Sbjct: 168 NLVEDHPKDARKVV----DAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGI 223
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P+ + +LI A + D+ A++ E M +E PN+ TY ISG+ LG+V+A
Sbjct: 224 EPNVHSYTNLIHAYAVAQDLRGAIACVEEM-EAEGVSPNAATYSVIISGYGRLGDVEAAE 282
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+W+ ++ + N Y ++IH KA + + + M G+ ++ + +++G
Sbjct: 283 RWFQRALSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGY 342
Query: 260 CARRKLDR---VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD-------ELEEQ 306
R +D+ V LK G L+ Y +LG++D E+E+Q
Sbjct: 343 VHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQ 399
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L K+ + A+ + ME QGIK + ++ +I + GD A S+FE M
Sbjct: 373 YGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM- 431
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ KP+ TY+ ++ F G ++ + A + ++TY +I G +K D
Sbjct: 432 SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDL 491
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+M G PS ++ GL ++DR S + ++ G NE L
Sbjct: 492 RMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTL 551
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ Y +G + + + + P+V+ +
Sbjct: 552 IEGYACIGDMGLAFKYFNRIKEVGLKPDVIAY 583
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/289 (17%), Positives = 111/289 (38%), Gaps = 39/289 (13%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ +K N Y+ +I ++ + A VF M GIKPD +N L+ A +G
Sbjct: 398 DQGIKHNRKT---YSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNG 454
Query: 158 DVVTALSLFEIMVSSE----------------------------------EYKPNSKTYD 183
+ AL L M S + ++P++ TY+
Sbjct: 455 QMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYN 514
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G + G +D + AG N ++Y +LI G D +++ + +
Sbjct: 515 VIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEV 574
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P + +L+ C ++ + + G +N + L+ + + G + E
Sbjct: 575 GLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEA 634
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ ++ + +P++ H ++ I + + ++ +M +QG+
Sbjct: 635 SDIMQKMRHEGLTPDI--HSYTSFINACCKAGDMLKATETIEQMKQQGV 681
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ K + + + M A G+ ++ ++N L+ GD+ A + + M
Sbjct: 583 YASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKM- 641
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E P+ +Y +FI+ G++ + G N+Q Y +LIHG A
Sbjct: 642 RHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYP 701
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ Y+EM S G+IP P+ ++ L +R + R F
Sbjct: 702 EKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVF 742
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 127/322 (39%), Gaps = 8/322 (2%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y LI Q++ A+ MEA+G+ P++A ++ +I GDV A
Sbjct: 222 GIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAA 281
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
F+ + SE + N Y+ I + GN++ A G + Y L+
Sbjct: 282 ERWFQRAL-SENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMD 340
Query: 223 GSLKARDFD---SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
G + R D +V R + G+ P++ ++ K+D+ + G
Sbjct: 341 GYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQG 400
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
K N ++ Y +LG E ++ P+ + ++ ++ + + +++
Sbjct: 401 IKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGIT--YNILMNAFCKNGQMNR 458
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLV 398
+ RM + G + ++I + + + D ++ ATY+ ++
Sbjct: 459 ALELLARM-ESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIM 517
Query: 399 AGYRRAGLSGKLDSVINEMKFA 420
G +AG + S+I+EM A
Sbjct: 518 HGLAQAGQMDRAASIIDEMVVA 539
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 7/249 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
KP + + ++ + G+ + + + AAG NV +Y +LIH A+D
Sbjct: 189 KPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDLRGAIA 248
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
EEM + G+ P+ ++ G ++ + + + L W N+ + ++ YC
Sbjct: 249 CVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAYC 308
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD---DVEYSVGRMGKQGL 352
+ G ++ E + + + Q E L ++ ++ Y +D +V + + GL
Sbjct: 309 KAGNMERAEAIMTAMEE--QGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGL 366
Query: 353 SFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD 411
S + +I Y + D+ L + + K R TY ++ GY + G +
Sbjct: 367 S-PTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAF 425
Query: 412 SVINEMKFA 420
SV +M A
Sbjct: 426 SVFEDMSNA 434
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A ++T M +G++P + F +LI V A L+ M
Sbjct: 431 YNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREM- 489
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +E P+ T+ A I G S + +K + + TY +I G KA +
Sbjct: 490 NEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNM 549
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D E+M+ G++P ++ GLC+ ++ K F+ L K+NE L
Sbjct: 550 DKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSAL 609
Query: 291 VKCYCELGRVDE 302
+ YC GR+ E
Sbjct: 610 LHGYCGQGRLTE 621
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 2/208 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+A LI + K Q++ + M QG++PDS ++ S+I A G + ++MV
Sbjct: 641 HAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMV 700
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ E+ PN TY AF++G +G +D + + A S N TY + K +
Sbjct: 701 T-EKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNM 759
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ EM+ G++ + ++ G C +L L + G + +
Sbjct: 760 KEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTI 818
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPE 318
+ +C G V E +T+ + P+
Sbjct: 819 IYEHCRSGDVGAAVELWDTMLRKGVEPD 846
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A + + G P+ V+N+LI A LC G+ + L + S N
Sbjct: 335 KKGNIDSAYDLVVKLGRFGFLPNLFVYNALINA-LCKGEDLDKAELLYKNMHSMNLPLND 393
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I F G +D ++ I G + Y SLI+G K D + + Y +
Sbjct: 394 VTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTK 453
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDR 267
M++ G+ P+ ++ G C ++++
Sbjct: 454 MINEGLEPTATTFTTLISGYCKDLQVEK 481
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV + A H+F M I P+S + + + G++ A L M+ N+
Sbjct: 720 KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKG--LLANT 777
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I GF LG + K + G + TY ++I+ ++ D + ++
Sbjct: 778 ATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDT 837
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
M+ G+ P ++ G C LD+ +L G K
Sbjct: 838 MLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLK 879
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 113/296 (38%), Gaps = 7/296 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ V S+ +G+K D + +L+ + L MV
Sbjct: 256 YNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMV 315
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P + G GN+D+ GF N+ Y +LI+ K D
Sbjct: 316 ELG-FVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDL 374
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + Y+ M S+ + + +++ C R LD +S+ ++ G + L
Sbjct: 375 DKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSL 434
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ G + E + N+ E F+ +I Y +++ M ++
Sbjct: 435 INGHCKFGDLSAAEFLYTKMI--NEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEK 492
Query: 351 GLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
++ ++ +CS A + LF + ++ K TY+ ++ GY +A
Sbjct: 493 EIAPSVYTFTALIYGLCSTNEMAEASK--LFDEMVERKIKPTEVTYNVMIEGYCKA 546
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/351 (20%), Positives = 132/351 (37%), Gaps = 47/351 (13%)
Query: 70 SQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
S +++ ALI L S++ +A + + +++ +K E Y +I K N+ A
Sbjct: 497 SVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEV---TYNVMIEGYCKAHNMDKAF 553
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G+ PD+ + LI LCS V+A F + + K N Y A + G
Sbjct: 554 ELLEDMLHNGLVPDTYTYRPLISG-LCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHG 612
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G + I G ++++ + LI G++K +D + ++M G+ P
Sbjct: 613 YCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPD 672
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
I +++ + L ++ N + C++G +D E
Sbjct: 673 SVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFE 732
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS--VGRMGKQGLSFKSAEDVEMVICS 366
+ N SP + V Y + + K+G + K A D
Sbjct: 733 KMLTANISP--------------------NSVTYGCFLDSLTKEG-NMKEATD------- 764
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
L + +KG ATY+ L+ G+ + G + V++EM
Sbjct: 765 -----------LHHEMLKGLLA-NTATYNILIRGFCKLGRLIEATKVLSEM 803
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 4/206 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L K+ VP A+ V ME+ GIK ++ ++ LI + D A S+FE M+
Sbjct: 431 YGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMI 490
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ Y+ + F +GN+D + + + +T+ +I G A D
Sbjct: 491 KS-GLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDM 549
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ M G P++ ++ GL + +++R S L + G NE+ +
Sbjct: 550 KRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTII 609
Query: 291 VKCYCELGRVDELEEQLETLTKCNQS 316
++ Y G ++ + E TK +S
Sbjct: 610 MRGYAASG---DIGKAFEYFTKIKES 632
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 55 IKTTLDSVDIFAFNS---SQFSWDALITSL-QSSSPKKAQLVLEWRLDKM-LKGNESCLD 109
+K LD++D+ + + +++ALI L + ++A VL DKM + G
Sbjct: 549 MKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVL----DKMSIAGIAPNEH 604
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y ++ ++ A FT ++ G+K D ++ +L+ AC SG + +AL++ M
Sbjct: 605 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 664
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVNVQTYESLIHGS 224
S ++ N+ Y+ I G++ G+V W AA++ G N+ T+ S I+
Sbjct: 665 -SFQKIPRNTFIYNILIDGWARRGDV-----WEAADLMKQMKEDGIPPNIHTFTSYINAC 718
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
KA D + +EM +G+ P++ +++G DR + + G K +E
Sbjct: 719 CKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDE 778
Query: 285 NMAQKLV 291
LV
Sbjct: 779 AAYHCLV 785
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 118/310 (38%), Gaps = 40/310 (12%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ K + A F +M A+GI+P++ VF SL+ A + D+ ALS E M
Sbjct: 255 EFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEM 314
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
SE + TY I+G+ + ++ +K + ++N Y ++IH ++ +
Sbjct: 315 -KSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIHAHCQSGN 373
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + EM GI I + ++ G +AQ
Sbjct: 374 MDRAEELVREMEEDGIDAPIDVYHSMMHGY-------------------------TVAQD 408
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
KC E L +C P ++ + +I LY ++ M
Sbjct: 409 EKKCLI----------VFERLKECGFRPSIIS--YGCLINLYVKIGKVPKALAVSKEMES 456
Query: 350 QGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
G+ + + M+I + + + +F D IK + RA Y+ LV + + G
Sbjct: 457 HGIKHNN-KTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMD 515
Query: 409 KLDSVINEMK 418
+ + MK
Sbjct: 516 RAIRIFERMK 525
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 6/213 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M G P +N+LI + V A+S+ + M S PN TY +
Sbjct: 552 ALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKM-SIAGIAPNEHTYTIIM 610
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+++ G++ +++ +G ++V YE+L+ K+ S EM I
Sbjct: 611 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIP 670
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ I +++G R + +K + G N + + C+ G + E
Sbjct: 671 RNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENV 730
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYA---LSDR 336
++ + P V F+ +I+ +A L DR
Sbjct: 731 IQEMADVGLKPNV--KTFTTLIKGWAKVSLPDR 761
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 54/292 (18%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 91 LVLEWRLDKMLKGNESCLDE------------YACLIALSGKVQNVPFAMHVFT------ 132
LV + + + ++G SC++E Y+ LIA GK + A +F
Sbjct: 294 LVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKL 353
Query: 133 -----------------------------SMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
ME GI V++S++ + D L
Sbjct: 354 DNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCL 413
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
+FE + ++P+ +Y I+ + +G V + G N +TY LI+G
Sbjct: 414 IVFERLKEC-GFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLING 472
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ DF + +E+M+ G+ P I ++E C +DR + + + +
Sbjct: 473 FIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPS 532
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYAL 333
+ +++ + G + + L+ + + +P V+ + G+IR + +
Sbjct: 533 NRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQV 584
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 166/401 (41%), Gaps = 38/401 (9%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ KG + L
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL---IDRMVAKGCQPDLVT 837
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A ++ ME ++P ++N++I + AL+LF+ M
Sbjct: 838 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 896
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY + IS + G ++ + I + +V T+ +LI +K
Sbjct: 897 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 956
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I PSI ++ G C +LD K +F++ + L
Sbjct: 957 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016
Query: 291 VKCYCELGRVDELEEQLETLTK----------------------CNQSPEVLLHFFS-GI 327
+K +C+ RV+E E +++ C+ + E+ S G+
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSY-----FRCAA---YDRLD 377
+ L D G++ K + F+ + +E I +Y C A D D
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + K Y+ +++G+ R G + D++ EMK
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + +P A+ V M G +P+ +SL+ S + A++L + M
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y+PN+ T++ I G +A G ++ TY +++G K D
Sbjct: 793 VTG-YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M + P + I +++GLC + +D + K + G + N L
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P+V FS +I + +L + E M K+
Sbjct: 912 ISCLCNYGRWSDASRLLSDMIERKINPDVFT--FSALIDAFVKEGKLVEAEKLYDEMVKR 969
Query: 351 GL 352
+
Sbjct: 970 SI 971
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 122/301 (40%), Gaps = 5/301 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++ + + ME GI+ D FN +I C V ALS+ M+ Y+P+
Sbjct: 200 KLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKL-GYEPDR 258
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++GF V + G+ ++ Y ++I K + + F++E
Sbjct: 259 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 318
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+ GI P++ ++ GLC + L ++ N L+ + + G+
Sbjct: 319 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 378
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V E +E E + + + P+++ +S +I L DR+D+ M +G
Sbjct: 379 VLEAKELFEEMVRMSIDPDIVT--YSSLINGLCLHDRIDEANQMFDLMVSKG-CLADVVS 435
Query: 360 VEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + + D + LF + + TY+ L+ G+ +AG K ++M
Sbjct: 436 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 495
Query: 419 F 419
F
Sbjct: 496 F 496
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K V A +F M I PD ++SLI + A +F++MV
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 425
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + +Y+ I+GF V+ K + G N TY +LI G +A D
Sbjct: 426 S-KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D F+ +M GI P I +L GLC +L++ + + ++ +
Sbjct: 485 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ C+ G+V+E +L+ P+++ ++ ++ L +VE +M ++
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT--YTTMMSGLCTKGLLHEVEALYTKMKQE 602
Query: 351 GL 352
GL
Sbjct: 603 GL 604
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 2/224 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+DKM++ G + + Y +I K + V A F +E +GI+P+ + +L+
Sbjct: 281 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 340
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S A L M+ ++ PN TY A + F G V + + + ++
Sbjct: 341 SSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 399
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI+G D ++ ++ M+S G + + ++ G C ++++ + +
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 459
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
G N L++ + + G VD+ +E + SP++
Sbjct: 460 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 503
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 2/207 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KMLK G E L+ + V A+ + M G KPD +N++I +
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ V A F+ + + +PN TY A ++G + + + I + NV
Sbjct: 306 TKRVNDAFDFFK-EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 364
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L+ +K +EEM+ + I P I ++ GLC ++D +
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
+ G + L+ +C+ RV++
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVED 451
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 1093 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 1148
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 1149 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 1208
Query: 238 EEMMSLG 244
+EM S G
Sbjct: 1209 KEMRSCG 1215
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 5/265 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
++ + + F+ S +++ +I ++ KA +L+ + K + NE + LI
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT---FNILIDG 308
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +NV A VF M+ QG++P+ +NSLI +G + AL L + M S KP
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKP 367
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A I+GF + + G + NV T+ +LI KA D
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M+ G+ P++ ++ G C + + K + G G K + LV C+
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH 322
G + L+ + + +P L +
Sbjct: 488 GETRKAVRLLDEMFEVGLNPSHLTY 512
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M + I + F+ +I G A + E M + + P+ TY+ I G+
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTIIDGY 274
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G + + +A N T+ LI G + + + + +EEM G+ P++
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNV 334
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC+ KLD + G G K N L+ +C+ + E E L+
Sbjct: 335 VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD 394
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ K +P V+ F+ +I Y + R+DD
Sbjct: 395 IGKRGLAPNVIT--FNTLIDAYGKAGRMDD 422
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + NV A + ME G+K D +N L+ A G+ A+ L + M
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMF 501
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY+A I G+ GN A G N+ TY LI G
Sbjct: 502 EVG-LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKL 560
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ +R EM+ G+IP+
Sbjct: 561 EEANRLLNEMLEKGLIPN 578
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 7/261 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
V+ K + + + ++++LI L S+ L L+ ++ M G + + Y
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM--GLKPNVVTY 372
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI K + + A + + +G+ P+ FN+LI A +G + A L +M+
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ PN TY+ I GF GNV K G ++ TY L+ K +
Sbjct: 433 TG-VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
R +EM +G+ PS +++G + + G + N L+
Sbjct: 492 KAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLI 551
Query: 292 KCYCELGRVDE----LEEQLE 308
K +C G+++E L E LE
Sbjct: 552 KGFCNKGKLEEANRLLNEMLE 572
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 3/211 (1%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+S + + L+ A + +G++ AL F+ ++ ++ + + + G + +
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFD-RAGDYGFRLSALSCNPMLVSLVKEGRIGVVESV 216
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
Y I VNV T++ +I+G K F E+M + G PS+ +++G C
Sbjct: 217 YKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCK 276
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
K+ + + LK ++ NE L+ +C V ++ E + + P V+
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ +I + +LD+ +M GL
Sbjct: 337 --YNSLINGLCSNGKLDEALGLQDKMSGMGL 365
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 96 RLDKMLKGN--ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+L K ++GN ++ L Y L+ K A+ + M G+ P +N+LI
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G+ AL++ +M + + N TY+ I GF + G ++ N+ + G N
Sbjct: 520 FREGNSTAALNVRTLM-EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 578
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
TY+ L RD EMM G IP I
Sbjct: 579 RTTYDIL-------RD---------EMMEKGFIPDI 598
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 7/253 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQ 122
F + + S++A++ SL + K ++EW +ML C D Y L+ ++
Sbjct: 218 FNYRPFKHSYNAILLSLLAIREYK---LIEWVHQQMLV-EGYCPDTLTYNILMCAKYRLG 273
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ + M G PD +N L+ + AL L M + P+ +
Sbjct: 274 KLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHM-KEIGFDPSILHF 332
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G S GN+DA N ++ I GF +V Y +I G + A + + ++EM++
Sbjct: 333 TTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIA 392
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G +P++ ++ GLC K + + LK + G K N + LV G++ E
Sbjct: 393 RGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSE 452
Query: 303 LEEQLETLTKCNQ 315
E ++ + + Q
Sbjct: 453 AREVIKEMAENGQ 465
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 1/193 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G PD+ +N L+CA G + L + M S + P+ TY+ +
Sbjct: 246 VHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSG-FSPDFHTYNILLHVL 304
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
A K GF ++ + +LI G +A + D+ + F++EM+ G +P +
Sbjct: 305 GKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDV 364
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ G +L++ + ++ G N +++ C G+ +E L+
Sbjct: 365 VCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKE 424
Query: 310 LTKCNQSPEVLLH 322
+ P L++
Sbjct: 425 MGSRGCKPNFLVY 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 2/195 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M + G Y L+ + GK A+ + M+ G P F +LI
Sbjct: 282 LDEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSR 341
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G++ F+ M+ + + P+ Y I+G+ G ++ + + IA G NV
Sbjct: 342 AGNLDACNYFFDEMIKNG-FVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVF 400
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY S+I G A F+ +EM S G P+ + ++ L KL + +K +
Sbjct: 401 TYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEM 460
Query: 276 LGGGWKINENMAQKL 290
G ++ Q +
Sbjct: 461 AENGQYVHRLKVQGM 475
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 28/306 (9%)
Query: 5 CRVLSVAKSSRYLLMPLRF--DRLLCNTNTNS----TSVSSSNPLISRLLQVPVSQIKTT 58
CR LS A S+ +M L + D ++ NT N VS + L+ R++++ T
Sbjct: 136 CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLIT 195
Query: 59 LDS-VDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L++ V+ N LI + + + ++ L+ M K ++ L
Sbjct: 196 LNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL--------- 246
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYK 176
AM + ME + IK D AV S+I LC G + A +LF M + +K
Sbjct: 247 ---------AMELLRKMEERNIKLD-AVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFK 295
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ TY+ I GF + G D K I S NV T+ LI +K D+
Sbjct: 296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EMM GI P+ +++G C +L+ + ++ G + L+ YC+
Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCK 415
Query: 297 LGRVDE 302
R+D+
Sbjct: 416 ANRIDD 421
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+GKV + A+ + M G +P+ + ++ SG A+ L M
Sbjct: 203 LCLNGKVSD---AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + GF ++ TY +LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL LK ++ G N L+ +
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ R++E + ++ + P+++ F+ +I Y ++R+DD
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMT--FNILINGYCKANRIDD 421
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 3/234 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ + + +A + G +PD+ +FN+L+ V AL L + MV +KP
Sbjct: 135 RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM-GHKPTL 193
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++G G V + GF N TY +++ K+ +
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M I +++GLC LD + + G+K + L+ +C GR
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
D+ + L + K SP V+ FS +I + +L + + + M ++G++
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVT--FSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M ++G PD FN LI + + L LF M S N+ TY+ +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM-SLRGVIANTVTYNTLV 445
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ K + ++ ++ +Y+ L+ G + + + ++ +
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I I ++ G+C K+D L G K++ ++ C + + +
Sbjct: 506 LDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADIL 565
Query: 307 LETLTKCNQSPEVLLH 322
+T+ +P+ L +
Sbjct: 566 FRKMTEEGHAPDELTY 581
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ ++ +N+L+ SG +
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MV S +P+ +Y + G G ++ + + + +++ Y +I
Sbjct: 457 AKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIII 515
Query: 222 HGSLKARDFD 231
HG A D
Sbjct: 516 HGMCNASKVD 525
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F+ ME G+ P+ +N++I SG + A E MV E+ P+ TY FI
Sbjct: 275 AIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVK-EKVSPSLITYSVFI 333
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G L +D N GF N Y +LI G K + + ++M+S GI
Sbjct: 334 NGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGIS 393
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
P+ L +++G C ++ + ++ L+ ++G G IN+ ++ C
Sbjct: 394 PNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLC 442
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 128/298 (42%), Gaps = 17/298 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ + +G P+ N+LI +G++ L L M+ + TY+ I
Sbjct: 485 AVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLE-RGLVFDRITYNTLI 543
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG G V + + G ++ T+ L+HG A D R + E G +
Sbjct: 544 SGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV 603
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---EL 303
P++ +++G C K++ ++ L L+ ++N + L++ YC G ++ L
Sbjct: 604 PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL 663
Query: 304 EEQLET---LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
+ +++ L C + L+H I +DD ++ + M K+GL +
Sbjct: 664 RDDMKSRGVLLSC-ATYSSLMHGLCNI-------GLVDDAKHLLDEMRKEGL-LPNVVCY 714
Query: 361 EMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I Y + +++++ L + + + TY ++ G+ + G + + ++NEM
Sbjct: 715 TTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEM 772
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 49/307 (15%)
Query: 126 FAMHVFTSMEAQGIKPD----SAVFNSLICAC-----------LCSGDVVTALSLFEIMV 170
FA VF+ + +G+ P + + +SL+ A +C G ++ + LF M+
Sbjct: 204 FAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMI 263
Query: 171 SSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+AF G ++G M K G + NV TY ++IHG K+
Sbjct: 264 ------------NAFCKGHREDDAIGLFSKMEKL-------GVAPNVVTYNNIIHGLCKS 304
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D RF E+M+ + PS+ + GL K+D LK + G+ NE +
Sbjct: 305 GRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVY 364
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L+ YC++G + E + + + SP + + +I+ + SD++ E + M
Sbjct: 365 NTLIDGYCKMGNISEALKIRDDMLSKGISPNSVT--LNSLIQGFCKSDQIGQAENVLEEM 422
Query: 348 GKQGLSFKSAEDVEMVI---CSYFR--CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYR 402
+GL MVI C FR A + ++ L +++ + L LV+G
Sbjct: 423 IGRGLPINQG-SFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTT----LVSGLC 477
Query: 403 RAGLSGK 409
+AG G+
Sbjct: 478 KAGKQGE 484
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 2/206 (0%)
Query: 98 DKMLKGNES-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+K S L Y+ I K++ + A V M G P+ V+N+LI
Sbjct: 315 EKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKM 374
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G++ AL + + M+S + PNS T ++ I GF + I G +N +
Sbjct: 375 GNISEALKIRDDMLS-KGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGS 433
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ +I+ F + F EM+ + P+ +L ++ GLC K LL
Sbjct: 434 FSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLL 493
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G G+ N + L+ C+ G + E
Sbjct: 494 GKGFVPNIVTSNALIHGLCKAGNMQE 519
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 38/256 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K V + M +GI+PD FN L+ LC+ D + S
Sbjct: 539 YNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHG-LCNADKIDEASRLWHEC 597
Query: 171 SSEEYKPNSKTYDAFISGF----------------------------SSL-------GNV 195
Y PN TY I G+ +SL GN+
Sbjct: 598 KKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+A + + G ++ TY SL+HG D +EM G++P++ +
Sbjct: 658 NAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G ++++V L+ + N+ ++ +C+LG+ E + L +T+
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGI 777
Query: 316 SPEVLLH--FFSGIIR 329
P+ + + F +G+ +
Sbjct: 778 LPDAVTYNAFTNGLCK 793
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 1/145 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A + M+++G+ A ++SL+ G V A L + M E PN Y
Sbjct: 656 NMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEM-RKEGLLPNVVCY 714
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G+S LG ++ +N + N TY +I G K + EM
Sbjct: 715 TTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTE 774
Query: 243 LGIIPSIPILEKVLEGLCARRKLDR 267
GI+P GLC K++
Sbjct: 775 KGILPDAVTYNAFTNGLCKEGKVEE 799
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A H+ M +G+ P+ + ++I G + + + M SS PN TY I
Sbjct: 695 AKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM-SSHNIHPNKFTYTIMI 753
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
GF LG K G + TY + +G K + + +EM S
Sbjct: 754 DGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSS 809
>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
Length = 495
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 102 KGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
KG++ D Y+ +SG K + +P A +V M G P+ FN+L+ +G +
Sbjct: 207 KGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKL 266
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A ++FE MV +P + TY I+G + +D N ++ + G NV TY +
Sbjct: 267 DEANAMFEYMVE-RNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTA 325
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G A + + M S G P++ +V+ LC +++R
Sbjct: 326 LIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLF------- 378
Query: 280 WKINENMAQKLVKC 293
N+ M + KC
Sbjct: 379 ---NDAMGSRTAKC 389
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 20/281 (7%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE-YACLIALSGKVQNV 124
F + F+++A + +L + KA+ + D ML + CL Y I L G +
Sbjct: 33 FEHTVFTYNAYLNALVKGGHGSKARKIF----DDMLY--KECLPNIYTYGIVLRGLCDDA 86
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKT 181
A+ + ME++ + P + + N L+ +CLC +G V A L++ + S+E + +
Sbjct: 87 KTDAALELLQDMESKMLTPTTFIVNMLV-SCLCKNGKVDAAYELYKRL--SDECSLDRIS 143
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ G +D + ++ TY L++G +A + EEM+
Sbjct: 144 YNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMI 203
Query: 242 ----SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++P + V+ G C R+L + L+ ++ G N L+ C
Sbjct: 204 EGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLT 263
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G++DE E + + N P + ++ +I +A + R+D
Sbjct: 264 GKLDEANAMFEYMVERNCEPTAVT--YTVLITGHARALRID 302
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ PD +N++I + + TA + M+ S PN T++ + G G +D
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG-CSPNVVTFNTLLDGLCLTGKLDEA 269
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
N + + TY LI G +A D + ++ +M+ G+ P++ ++ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LC K++ LK + G + N +++ C+ G+++
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIE 372
>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
Length = 495
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 102 KGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
KG++ D Y+ +SG K + +P A +V M G P+ FN+L+ +G +
Sbjct: 207 KGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKL 266
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A ++FE MV +P + TY I+G + +D N ++ + G NV TY +
Sbjct: 267 DEANAMFEYMVE-RNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTA 325
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G A + + M S G P++ +V+ LC +++R
Sbjct: 326 LIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLF------- 378
Query: 280 WKINENMAQKLVKC 293
N+ M + KC
Sbjct: 379 ---NDAMGSRTAKC 389
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 20/281 (7%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE-YACLIALSGKVQNV 124
F + F+++A + +L + KA+ + D ML + CL Y I L G +
Sbjct: 33 FQHTVFTYNAYLNALVKGGHGSKARKIF----DDML--YKECLPNIYTYGIVLRGLCDDA 86
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKT 181
A+ + ME++ + P + + N L+ +CLC +G V A L++ + S+E + +
Sbjct: 87 KTDAALELLQDMESKMLTPTTFIVNMLV-SCLCKNGKVDAAYELYKRL--SDECSLDRIS 143
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ G +D + ++ TY L++G +A + EEM+
Sbjct: 144 YNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMI 203
Query: 242 ----SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++P + V+ G C R+L + L+ ++ G N L+ C
Sbjct: 204 EGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLT 263
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
G++DE E + + N P + ++ +I +A + R+D
Sbjct: 264 GKLDEANAMFEYMVERNCEPTAVT--YTVLITGHARALRID 302
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ PD +N++I + + TA + M+ S PN T++ + G G +D
Sbjct: 211 VVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSG-CSPNVVTFNTLLDGLCLTGKLDEA 269
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
N + + TY LI G +A D + ++ +M+ G+ P++ ++ G
Sbjct: 270 NAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGG 329
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LC K++ LK + G + N +++ C+ G+++
Sbjct: 330 LCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIE 372
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 10/213 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L++ K + A+ + M G++ D+ +N+L+ C +G A+ ++E +V
Sbjct: 196 YSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLV 255
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + G LG + ++ +A + TY LIHG ++ D
Sbjct: 256 RDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDV 315
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--Q 288
DS R Y +M+ G++ + + +++G C ++ R KF G+ +
Sbjct: 316 DSAARVYSDMVKAGLVLDVSVYNSLIKGFC---EVGRTGEAWKFWDSTGFSGIRQITTYN 372
Query: 289 KLVKCYCELGRVDELEE---QLETLTKCNQSPE 318
+ K + G V E E QLE C SP+
Sbjct: 373 IMTKGLLDSGMVSEATELLKQLENDASC--SPD 403
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 4/207 (1%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSME---AQGIKPDSAVFNSLICACLC 155
K L+ + SC + L + +A F +E G + D ++S+I
Sbjct: 392 KQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCK 451
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G A +++ MV + KPNS Y+A I+GF + ++ K Y + G +
Sbjct: 452 DGRTHDANEVYKNMVK-DGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTII 510
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + +EM+ G P I ++ GLC +K+D +
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEI 570
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
L G +++ + L+ C G+VDE
Sbjct: 571 LDAGLQVDVMVHNILIHGLCSAGKVDE 597
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V+ +M G KP+S V+N+LI + A+ ++ I ++S P TY+ I
Sbjct: 458 ANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIY-IEMTSNGCCPTIITYNTLI 516
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + GF +++TY SLI G + + D R ++E++ G+
Sbjct: 517 DGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQ 576
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--QKLVKCYCELGRVDE-- 302
+ + ++ GLC+ K+D ++F +L + N+ L+ + E+G +D+
Sbjct: 577 VDVMVHNILIHGLCSAGKVD--EAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAA 634
Query: 303 -----------------LEEQLETLTKCNQSPEVLL 321
+++ L CN++PE +L
Sbjct: 635 SLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVL 670
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 1/182 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD F +LI +G A + E +S E + + +Y + I+ F G N+
Sbjct: 402 PDKVTFGTLIHGLCENGYANRAFEILEDARNSGE-ELDVFSYSSMINRFCKDGRTHDANE 460
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
Y + G N Y +LI+G + + + Y EM S G P+I +++GLC
Sbjct: 461 VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLC 520
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
K S K +L G+K + L++ C +VD + + +V+
Sbjct: 521 KAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580
Query: 321 LH 322
+H
Sbjct: 581 VH 582
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 5/203 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V + A+ ++ M + G P +N+LI LC + S +
Sbjct: 477 YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDG-LCKAEKYQEASSLTKEM 535
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+KP+ +TY + I G VD + + + AG V+V + LIHG A
Sbjct: 536 LERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKV 595
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D Y EM P++ +++G +D+ S +L G K +
Sbjct: 596 DEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTR 655
Query: 291 VKCYCELGRVDE----LEEQLET 309
+K C R E L E L T
Sbjct: 656 IKGLCSCNRTPEGVLLLNEVLAT 678
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 37/200 (18%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-- 196
I P+ +N ++ + GDV A+SLF + P+ TY +SG + +D
Sbjct: 154 IAPNLQTYNIILRSLCARGDVDRAVSLFSSL-RRRGVAPDRVTYSTLMSGLAKHDQLDNA 212
Query: 197 ----------------------------------AMNKWYAANIAAGFSVNVQTYESLIH 222
AM W G S N+ TY+ ++
Sbjct: 213 LDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLD 272
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K F + MM+ ++ GLC +D ++ G +
Sbjct: 273 GLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVL 332
Query: 283 NENMAQKLVKCYCELGRVDE 302
+ ++ L+K +CE+GR E
Sbjct: 333 DVSVYNSLIKGFCEVGRTGE 352
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL----- 117
D+F +N T L K+ L+ ++MLK N CL A L
Sbjct: 160 DVFTYN----------TVLHVMVRKEVVLLALGIYNRMLKLN--CLPNIATFSILIDGMC 207
Query: 118 -SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
SGK QN A+ +F M + I P+ + ++I + LC I +
Sbjct: 208 KSGKTQN---ALQMFDEMTQRRILPNKITY-TIIISGLCQAQKADVAYRLFIAMKDHGCI 263
Query: 177 PNSKTYDAFISGFSSLGNVD---AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
P+S TY+A + GF LG VD + K++ + + ++ Q Y LI G +AR F+
Sbjct: 264 PDSVTYNALLHGFCKLGRVDEALGLLKYFEKD---RYVLDKQGYSCLIDGLFRARRFEDA 320
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+Y +M I P + + +++GL K L + G + + L+K
Sbjct: 321 QVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKG 380
Query: 294 YCELGRVDE 302
YC+LG +DE
Sbjct: 381 YCDLGLLDE 389
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 129/329 (39%), Gaps = 7/329 (2%)
Query: 93 LEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L W++ K +K G D + LI K+ + A+ F M+ KPD +N+++
Sbjct: 109 LYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVL 168
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
+ V+ AL ++ M+ PN T+ I G G + +
Sbjct: 169 HVMVRKEVVLLALGIYNRMLKLNCL-PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRI 227
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N TY +I G +A+ D R + M G IP +L G C ++D
Sbjct: 228 LPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALG 287
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
LK+ + +++ L+ R ++ + +T+ N P+V+L ++ +++
Sbjct: 288 LLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVIL--YTIMMKG 345
Query: 331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKL 389
+ + + D + M ++GL +I Y D L L+ K
Sbjct: 346 LSKAGKFKDALRLLNEMTERGL-VPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFS 404
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G R+GL G + NEM+
Sbjct: 405 SACTYTILICGMCRSGLVGDAQQIFNEME 433
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 14/225 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+CLI + + A + M IKPD ++ ++ +G AL L M
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEM- 362
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P++ Y+A I G+ LG +D + + TY LI G ++
Sbjct: 363 TERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLV 422
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK-------------SFLKFLLG 277
+ + EM G PS+ +++G C +++ + FL+ G
Sbjct: 423 GDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQG 482
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ Q +V+ C+ G + + L LT +P ++ +
Sbjct: 483 ANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITY 527
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D+A +++ SG ++ A ++ + ++ + PN TY+ I GF GN++ K
Sbjct: 488 DTASLQTMVEQLCDSGLILKAYNIL-MQLTDSGFAPNIITYNILIHGFCKAGNINGAFKL 546
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ G S + TY +LI+G L A + ++++ G P + + + C
Sbjct: 547 FKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCR 606
Query: 262 RRKLDRVKS-FLKFL 275
R K+ S +LK+L
Sbjct: 607 RNKITLAFSLWLKYL 621
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 19/215 (8%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK ++ A+ + M +G+ PD+ +N+LI G + A SL + +S +
Sbjct: 349 AGKFKD---ALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSL-HLEISKNDCFS 404
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ TY I G G V + + G +V T+ +LI G KA + + +
Sbjct: 405 SACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLF 464
Query: 238 EEMMSLGIIPSIPI--------------LEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+M +G PS+ + L+ ++E LC + + + L L G+ N
Sbjct: 465 YKM-EIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPN 523
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ +C+ G ++ + + L SP+
Sbjct: 524 IITYNILIHGFCKAGNINGAFKLFKELQLKGLSPD 558
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 5/254 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
++ + + F+ S +++ +I ++ KA +L+ + K + NE + LI
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT---FNILIDG 308
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +NV A VF M+ QG++P+ +NSLI +G + AL L + M S KP
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKP 367
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+A I+GF + + G + NV T+ +LI KA D
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M+ G+ P++ ++ G C + + K + G G K + LV C+
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487
Query: 298 GRVDELEEQLETLT 311
G + L+ +T
Sbjct: 488 GETRKAVRLLDEMT 501
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 5/293 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M + I + F+ +I G A + E M + + P+ TY+ I G+
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTIIDGY 274
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G + + +A N T+ LI G + + + + +EEM G+ P++
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNV 334
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC+ KLD + G G K N L+ +C+ + E E L+
Sbjct: 335 VTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDD 394
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ K +P V+ F+ +I Y + R+DD M G+ + +I + R
Sbjct: 395 IGKRGLAPNVIT--FNTLIDAYGKAGRMDDAFLLRSMMLDTGVC-PNVSTYNCLIVGFCR 451
Query: 370 CAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
++G+ K TY+ LV + G + K +++EM E
Sbjct: 452 EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLME 504
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + NV A + ME G+K D +N L+ A G+ A+ L + M
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMT 501
Query: 171 SSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
E+ + N TY+ I GF + G ++ N+ + G N TY+ L R
Sbjct: 502 LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL-------R 554
Query: 229 DFDSVDRFYEEMMSLGIIPSI 249
D EMM G IP I
Sbjct: 555 D---------EMMEKGFIPDI 566
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 3/211 (1%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+S + + L+ A + +G++ AL F+ ++ ++ + + + G + +
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFD-RAGDYGFRLSALSCNPMLVSLVKEGRIGVVESV 216
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
Y I VNV T++ +I+G K F E+M + G PS+ +++G C
Sbjct: 217 YKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCK 276
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
K+ + + LK ++ NE L+ +C V ++ E + + P V+
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ +I + +LD+ +M GL
Sbjct: 337 --YNSLINGLCSNGKLDEALGLQDKMSGMGL 365
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 4/206 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D M+K + C D I + G Q N+P A +F M ++G+KPD + + I L
Sbjct: 406 DDMIK-HGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G+ A + E M +E + P+ TY+ I+G LGN D N+ G +
Sbjct: 465 LGNPSKAFGMKEEM-KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHV 523
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY S+IH L + + + +M+ GI PS+ ++ R +LD K + +
Sbjct: 524 TYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEM 583
Query: 276 LGGGWKINENMAQKLVKCYCELGRVD 301
G N L+ C+ +D
Sbjct: 584 QDKGVSPNVITYNALIYGLCKENMMD 609
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 4/172 (2%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
++ L+ +P KA + + +G L Y LI K+ N A + M
Sbjct: 459 IVGELKLGNPSKA---FGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRL 515
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+GI PD + S+I A L SG + A +F M+ + P+ TY I ++ G +D
Sbjct: 516 EGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLK-KGIHPSVVTYTVLIHSYAVRGRLD 574
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
K++ G S NV TY +LI+G K D + EM S G+ P+
Sbjct: 575 FAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPN 626
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V++ M I+P FN+++ + G+V A+ + ++M PN +Y+ ++G
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVM-RMFGCDPNDVSYNVLVNGL 252
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G D + G V+ TY LI G K F+ + EM+ G +P++
Sbjct: 253 SGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTV 312
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ LC ++ + +L + +NE++ LV
Sbjct: 313 VTYNTIMYSLCRLGRVSDARRYLDVM------VNEDLMPDLV 348
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 7/245 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N+ A + M G+ PD F L+ G++ A LF+ M+
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML 444
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S KP+ Y I G LGN A GF ++ TY LI+G K +F
Sbjct: 445 -SRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNF 503
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + ++M GI+P ++ L + + +L G + L
Sbjct: 504 DDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVL 563
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL-SDRLDDVEYSV-GRMG 348
+ Y GR+D ++ + + SP V+ ++ +I Y L + + DV Y++ M
Sbjct: 564 IHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT--YNALI--YGLCKENMMDVAYNLFAEME 619
Query: 349 KQGLS 353
+G+S
Sbjct: 620 SKGVS 624
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF+ M +GI P + LI + G + A F+ M + PN TY+A I
Sbjct: 541 AEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEM-QDKGVSPNVITYNALI 599
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +D +A + G S N TY LI+ + + + + Y++M+ I
Sbjct: 600 YGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIK 659
Query: 247 P 247
P
Sbjct: 660 P 660
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 3/209 (1%)
Query: 111 YACLI-ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y L+ LSGK + A + M G+K + +N LI C ++ +
Sbjct: 245 YNVLVNGLSGKGE-FDRAKELIEQMSMLGLKVSAHTYNPLIRG-FCKKEMFEEANDLRRE 302
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P TY+ + LG V ++ + ++ +Y +LI+G + +
Sbjct: 303 MLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGN 362
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
F + E+ S ++PS+ +++G C LD K ++ G +
Sbjct: 363 FAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTI 422
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPE 318
LV+ +C++G + +E + + P+
Sbjct: 423 LVRGFCQMGNLPMAKELFDEMLSRGLKPD 451
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 4/260 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D + N S +++ LI L +S + + AQ + E +++ + + Y L+
Sbjct: 433 FDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPD---VITYTTLLKG 489
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K N+ A ++ M +GIKPD + + L GD A L E MV+ + + P
Sbjct: 490 FVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAP 549
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ I G +GN++ ++ G + TY ++I G L+ F Y
Sbjct: 550 DLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLY 609
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM+S + PS+ ++ G +L++ + + G + N L+ C+
Sbjct: 610 DEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKA 669
Query: 298 GRVDELEEQLETLTKCNQSP 317
G +DE L + + SP
Sbjct: 670 GNIDEAYRYLCKMEEEGISP 689
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 4/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++A I P +N+LI SG++ A L E M S Y P+ TY + GF
Sbjct: 432 LFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIY-PDVITYTTLLKGF 490
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS 248
GN+ + Y + G + Y + G L+ D + R +EEM++ P
Sbjct: 491 VKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPD 550
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++GLC L++ F + + G + +++ Y E GR + +
Sbjct: 551 LTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYD 610
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ SP V+ +F +I +A + RL+ M K+G+
Sbjct: 611 EMLSKRLSPSVITYFV--LIHGHAKAGRLEQAFQYSTEMKKRGV 652
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A V+ +M GI P FN+++ +C +GD+ ++ E+ + E+ + TY+
Sbjct: 258 AQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEF--SEVTYNIL 315
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+GFS G ++ +++ +GF V ++ LI G K FD +EM++ GI
Sbjct: 316 INGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGI 375
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFL 272
P+ + LC ++D + L
Sbjct: 376 YPTTSTYNIYIRALCEFGRIDDARELL 402
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ A M+ G FN LI G A + + M+++ Y P
Sbjct: 322 SGKMEE---ARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIY-P 377
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ +I G +D + ++ A +V +Y +L+HG +K R F +
Sbjct: 378 TTSTYNIYIRALCEFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMRKFVEASLLF 433
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+++ + I PSI +++GLC L+ G ++ E M +L+
Sbjct: 434 DDLKAGNINPSIVTYNTLIDGLCESGNLE-----------GAQRLKEEMTSQLI 476
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 5/155 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M GI P ++ +N I A G + A L M + P+ +Y+ +
Sbjct: 363 AWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAA-----PDVVSYNTLM 417
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ + + + A + ++ TY +LI G ++ + + R EEM S I
Sbjct: 418 HGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIY 477
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
P + +L+G L +L G K
Sbjct: 478 PDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIK 512
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+H+ SME +G K + +++SLI G A+ L++ M + + KPN Y AFI
Sbjct: 357 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM-AEKGCKPNVVVYGAFI 415
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G D ++ GF N TY SL+ G K D ++EMMS +
Sbjct: 416 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMR 475
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ +L GLC +L + +LG G K + ++K C++G VD+
Sbjct: 476 HNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDK 531
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 7/253 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + L Y +I K+ + A+ F M + PD +++L+ V
Sbjct: 192 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDE 251
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + M +E PN T++ I S G++ K G N TY +LI
Sbjct: 252 AVFLLDEM-QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG D E+M+S +P+ ++ GL +R+ + L + G K
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 370
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDD 339
NE + L+ + G+ + + + + P V+++ F G+ R ++ D+
Sbjct: 371 ANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCR----DEKPDE 426
Query: 340 VEYSVGRMGKQGL 352
E + M +G
Sbjct: 427 AEDILQEMLSKGF 439
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 146 FNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
FNS++ + GD A + + +S+ ++PN TY+ I LG +D +
Sbjct: 163 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 222
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ +V TY +L++G K R D +EM + G +P+ +++ L
Sbjct: 223 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 282
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL--TKC 313
L R + + G NE L+ C G++D+ LE + +KC
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKC 334
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + F++ +L+ + +KA LV + + + ++ N C + SG+++
Sbjct: 438 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE- 496
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYD 183
A+ V+T M +G+KPD ++S+I G V L LF E+ + +P+ TY+
Sbjct: 497 --ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 554
Query: 184 AFISGFSSLGNV 195
+ N+
Sbjct: 555 ILFNALCRQDNL 566
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 19/290 (6%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
S F ++ALI SL + +A+L+ + +K L N+ Y+ LI + + A+
Sbjct: 365 SLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDV---TYSILIDSFCRRGKLDTAI 421
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H M GIK +NSLI G++ A+S F+ M+ + KP +Y + ISG
Sbjct: 422 HFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI-DKGLKPTVVSYTSLISG 480
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + G + + Y G + N T+ +LI +A R ++EM+ ++P+
Sbjct: 481 YCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPN 540
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++EG C + L ++ G + + L+ C GRV E ++ ++
Sbjct: 541 EVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFID 600
Query: 309 TLTKCNQSPEVLLHF------FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L + HF +S ++ Y RL D M K+G+
Sbjct: 601 DLHR--------EHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGV 642
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 12/290 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV + A + ++ G P V+N+LI + G A LF+ M + N
Sbjct: 345 GKVVD---AFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEM-GEKGLCAN 400
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY I F G +D + I AG + V Y SLI+G K + + F++
Sbjct: 401 DVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFD 460
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G+ P++ ++ G C + KL + G G N L+
Sbjct: 461 EMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRAN 520
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ + + + + N P + ++ +I + + +M ++GL +
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVT--YNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYT 578
Query: 359 DVEMV--ICSYFR-CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ +CS R C A +D D + +KL Y L+ GY + G
Sbjct: 579 YRPLISSLCSTGRVCEAKKFID---DLHREHFKLNEMCYSALLHGYCKEG 625
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 6/240 (2%)
Query: 72 FSWDALITSLQSSSPK-KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ LI+SL S+ +A+ ++ + K NE C Y+ L+ K + A+ V
Sbjct: 577 YTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMC---YSALLHGYCKEGRLRDALGV 633
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +G+ D + LI + D L + M + +P+ Y + I G+S
Sbjct: 634 CREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM-HDQRLRPDKVIYTSMIDGYS 692
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G+V + I G + N+ TY +LI+ KA D + ++EM+ P+
Sbjct: 693 KAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHV 752
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+ L +++ +L G N LV+ +C+LGRV+E + L+ +
Sbjct: 753 TYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEM 811
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 112/304 (36%), Gaps = 41/304 (13%)
Query: 42 PLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKM 100
PLIS L V + K +D + F ++ + AL+ + L + + K
Sbjct: 581 PLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVK- 639
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+G + L YA LI + K Q+ + +M Q ++PD ++ S+I +G V
Sbjct: 640 -RGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVK 698
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD------------------------ 196
A +++IM+ E PN TY I+ G +D
Sbjct: 699 KAFGIWDIMID-EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCF 757
Query: 197 --------AMNK--WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+M K ++ G N +Y L+ G K + + +EM+ I
Sbjct: 758 LDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIF 817
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC---ELGRVDEL 303
P ++ C R LD F +L G K + L+ C ELG+ EL
Sbjct: 818 PDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFEL 877
Query: 304 EEQL 307
+ +
Sbjct: 878 RDDM 881
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 46/302 (15%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K++ V + +F + + GI+PD ++ ++I + + A + + M SS+ N
Sbjct: 204 AKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSD---LN 260
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y+ I G V + I G + + TY +L+ G K ++F+ +
Sbjct: 261 VVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMD 320
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ LG +P+ L ++EGL RRK G
Sbjct: 321 EMIELGFVPTEAALSSLVEGL--RRK---------------------------------G 345
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
+V + + + + K P + + ++ +I + D+ E MG++GL A
Sbjct: 346 KVVDAFDLVNRVKKVGAMPSLFV--YNALINSLCKDGKFDEAELLFKEMGEKGL---CAN 400
Query: 359 DV--EMVICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
DV ++I S+ R D FL I K+ Y+ L+ G+ + G S +
Sbjct: 401 DVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFD 460
Query: 416 EM 417
EM
Sbjct: 461 EM 462
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + N+ A+ + +M +G+KPD+ +N LI C +G++ A L + M+
Sbjct: 823 YSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMI 882
Query: 171 SSEEYKPNSKTYDAFISGFS 190
KPN T+ + G S
Sbjct: 883 -RRGVKPNQATHKSLSHGAS 901
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ +Y+ + GF LG V+ K I + TY ++I+ + + D F+
Sbjct: 784 NTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFW 843
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ M++ G+ P ++ G C +L + ++ G K N+ + L
Sbjct: 844 DTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 140/310 (45%), Gaps = 7/310 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ +IA GK++ A VF ++ G +++ +++L+ A +G+ A + MV
Sbjct: 649 HVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMV 708
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN+ + + F G +++++ G S N +T+ + H + +
Sbjct: 709 AAG-LQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNL 767
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD-RVKSFLKFLLGGGWKINENMAQK 289
+ Y +M G PSI + K L L +R ++ + +K + G +++ ++
Sbjct: 768 EEARSMYRQMKEAGFSPSIQVF-KALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNH 826
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ Y +LG + + + SP+ F+ +I LY+ + + + + + M K
Sbjct: 827 MISLYSKLGSYRNAALVFKGMQEIGCSPDATT--FNTLIMLYSRNQMVQEAQALLREMIK 884
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSG 408
G + + +I +Y R AY+ +L I + K Y+ ++ YR+AG
Sbjct: 885 TG-NAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHR 943
Query: 409 KLDSVINEMK 418
K++ +I +MK
Sbjct: 944 KIEEIIEQMK 953
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 5/218 (2%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A G++PD+ +N+LI AC + + A+ +FE M + P+ TY+A IS + G V
Sbjct: 189 AAGLRPDTITYNTLISACSLNNRLSDAILIFEEM-QRQGCDPDIWTYNAMISVYGRAGRV 247
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+A + + GF+ + TY S++H + + V+R MM S I
Sbjct: 248 EAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI-RGMMRDARCSSDEITYNT 306
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCELGRVDELEEQLETLTKCN 314
+ + + + R L + + +++ L+ + G V+E E + K
Sbjct: 307 MIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQ 366
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P L FS +I YA +D D E++ M + G+
Sbjct: 367 VRP--TLQAFSAMICAYAKADMFTDAEHTYSCMLRAGV 402
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 37/225 (16%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E +D Y +I+L K+ + A VF M+ G PD+ FN+LI + V A
Sbjct: 816 GLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEA 875
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+L M+ + PN TY IS + L + + + G + Y +I+
Sbjct: 876 QALLREMIKTGN-APNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMIN 934
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
KA + ++ E+M G PS+ + +++
Sbjct: 935 VYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDS------------------------ 970
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
Y + G + EE LETL + SP+ +H+ S I
Sbjct: 971 -----------YGKGGATGKAEEVLETLPEIGMSPDA-IHYTSII 1003
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 34/228 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA------------------ 152
Y +I++ G+ V A +F M+ QG PD+ +NS++ A
Sbjct: 234 YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMR 293
Query: 153 -CLCSGDVVTALSLFE---------------IMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
CS D +T ++ + + E P+S T+ I G V+
Sbjct: 294 DARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVN 353
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + +Q + ++I KA F + Y M+ G+ P + +L
Sbjct: 354 EAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVML 413
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ ++ K ++G G K ++ +V+ + + V E+E
Sbjct: 414 DVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIE 461
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L+ Y LI K + A +F M+ G PD +N + A SG + L+E
Sbjct: 788 LEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYE 847
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ KPN+ T++ I G ++D Y ++ FS TY LI G LK
Sbjct: 848 EMLF-RGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ +F+EEM+ G +P+ P+ ++ G + ++ + ++ G + +
Sbjct: 907 GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+V C C +G+VD+ E L P+++ +
Sbjct: 967 SIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCY 1001
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 137/336 (40%), Gaps = 50/336 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ I + G+ + A + M+ G PD + LI A +G + A LF M
Sbjct: 265 FTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMK 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S +KP+ TY + FS G++DA+ ++++ A G+ +V T+ LI K
Sbjct: 325 ASS-HKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKV 383
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR----------------VKSFLKF 274
D + M G+ P++ ++ GL +LD +++ F
Sbjct: 384 DEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILF 443
Query: 275 L--------LGGGWKINENM-----AQKLVKC------YCELGRVDELEEQLETLTKCNQ 315
+ G K E M +V C E GR++E +E L KC
Sbjct: 444 IDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGL 503
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-- 373
+P+ + ++ ++R Y + R+DD + M + G D E+VI + Y
Sbjct: 504 APDAIT--YNILMRCYGKAGRVDDAIKLLSEMEENGC------DPEVVIINSLIDTLYKA 555
Query: 374 DRLDLFLDHIKGSYKLRRA----TYDFLVAGYRRAG 405
DR+D + +++ A TY+ L+AG + G
Sbjct: 556 DRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEG 591
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y+ ++ V V A+H F ++ G+ PD +N +I S V ALSLF+
Sbjct: 963 LKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFD 1022
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M + P+ TY+A I G V+ K Y G NV TY +LI G +
Sbjct: 1023 EM-RNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMS 1081
Query: 228 RDFDSVDRFYEEMMSLGIIPS 248
+ D Y++MM G P+
Sbjct: 1082 GNPDRAYAVYKKMMVGGCRPN 1102
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 9/235 (3%)
Query: 96 RLDKMLK--------GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
RLD+ L+ G E+ Y I GK A+ F M+ GI P+ N
Sbjct: 417 RLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACN 476
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+ + + G + A F + P++ TY+ + + G VD K +
Sbjct: 477 ASLYSLAEQGRLEEAKEFFNGLKKCG-LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G V SLI KA D + ++ M + + P++ +L GL ++
Sbjct: 536 NGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQE 595
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ K ++ N L+ C C+ G VD + L +T+ N P+VL +
Sbjct: 596 ATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTY 650
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I G+ Q V A+ +F M +GI PD +N+LI +G V A ++E +
Sbjct: 1001 YNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYE-EL 1059
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
+ +PN TY+A I G S GN D Y + G N T+ L + S
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPNQS 1113
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 120/306 (39%), Gaps = 8/306 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++ + G ++ P A+ M G + + LI L SG AL ++ MVS E
Sbjct: 166 VLYIRGGLREAPVALE---KMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVS-E 221
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
KP+ KTY A + +++ + + G N+ T+ I +A D
Sbjct: 222 GIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEA 281
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ M G P + +++ LC KL+ K + K + L+
Sbjct: 282 YGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDK 341
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + G +D ++E + P+V+ F+ +I ++D+ ++ M KQG++
Sbjct: 342 FSDHGDLDAIKEFWSEMEADGYLPDVVT--FTILIDALCKVGKVDEAFGTLDVMKKQGVA 399
Query: 354 FKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
+ +IC R D L+LF + TY + Y ++G SGK
Sbjct: 400 -PNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIK 458
Query: 413 VINEMK 418
+MK
Sbjct: 459 TFEKMK 464
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIM 169
Y L+ GK +V A +F M +GI+PD + S++ CLC G V AL FE +
Sbjct: 931 YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY-SIMVDCLCMVGKVDDALHYFEEL 989
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S P+ Y+ I+G V+ + G + ++ TY +LI A
Sbjct: 990 KLSG-LDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGM 1048
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + YEE+ G+ P++ ++ G DR + K ++ GG + N +
Sbjct: 1049 VEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQ 1108
Query: 290 L 290
L
Sbjct: 1109 L 1109
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + A F M G P+ ++N L+ GDV TA LF MV
Sbjct: 896 YGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMV 955
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P+ K+Y + +G VD ++ +G ++ Y +I+G +++
Sbjct: 956 K-EGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRV 1014
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ ++EM + GI P +
Sbjct: 1015 EEALSLFDEMRNRGITPDL 1033
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 116/279 (41%), Gaps = 20/279 (7%)
Query: 53 SQIKTTLDSVDIFAFN----------SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK 102
+ +++ L +F FN S+ F+ + LI ++S+ +KA WR+ K
Sbjct: 104 AHVRSQLPEQALFYFNQMIGRGLVPGSNTFN-NLLILLIKSNFFEKA-----WRVFNETK 157
Query: 103 GNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
GN LD Y+ I + G +V + V ME G+ P+ V+ +LI C +GD+
Sbjct: 158 GNVK-LDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIE 216
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
LF M + N TY I+GF +G + Y G NV TY S+
Sbjct: 217 RGKQLFYKM-GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSM 275
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I ++ ++EM G+ ++ ++ GLC R++ + + + G
Sbjct: 276 ICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGL 335
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
N L+ YC +G +D+ + QSP +
Sbjct: 336 SPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
Query: 97 LDKMLKGNESC-LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+M + +C + Y LI + + V A + M+ G+ P+ +N+LI
Sbjct: 292 FDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCS 351
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G++ A SLF M SS + P+ TY+ I+GFS N + A G S +
Sbjct: 352 IGNLDKASSLFNQMKSSGQ-SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKV 410
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY L+ +++ + + + Y M G++ I I ++ GLC + K L
Sbjct: 411 TYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 470
Query: 276 LGGGWKINENMAQKLVKCYCELG 298
K N+ + ++ YC+ G
Sbjct: 471 DEMHLKPNDVIYNTMIYGYCKEG 493
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + N+ A +++SME G+ D ++ LI GD+ A LF+ +
Sbjct: 412 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL- 470
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KPN Y+ I G+ G+ + G NV +Y S I K +
Sbjct: 471 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKW 530
Query: 231 DSVDRFYEEMMSLGIIPSIPI 251
+ ++M+ LG+ PSI I
Sbjct: 531 TEAEVLLKDMIELGLKPSISI 551
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 1/212 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI + N+ A +F M++ G P A +N LI + + +
Sbjct: 339 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 398
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M + P+ TY + N++ + Y++ AG ++ Y LIHG
Sbjct: 399 EM-EARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVV 457
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + ++ + + + P+ I ++ G C R LK + G N
Sbjct: 458 GDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 517
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ C+ + E E L+ + + P +
Sbjct: 518 NSTIQILCKDEKWTEAEVLLKDMIELGLKPSI 549
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + + Y LI G+ + A+ VF M+ G +PD + +LI
Sbjct: 403 LDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAK 462
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + AL +++ M ++ P++ TY I+ G++ A +K + + G N+
Sbjct: 463 AGFLDFALEMYQRMQAAG-LSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLV 521
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I KAR++ S + Y +M S G P V+E L LD ++ +
Sbjct: 522 TYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEM 581
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V++ + +T+ P V S +R++ L
Sbjct: 582 KRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKL 641
Query: 334 SD 335
+D
Sbjct: 642 AD 643
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K +N A+ ++ M++ G +PD ++ ++ G + A ++F M
Sbjct: 523 YNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEM- 581
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ Y + + GNV+ +WY + G NV T SL+ L+
Sbjct: 582 KRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKL 641
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M+ LG+ PS+
Sbjct: 642 ADAYNLLQSMLELGLNPSL 660
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 3/210 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIM 169
Y LI + K + FA+ ++ M+A G+ PD+ + S+I CL +G + A LF M
Sbjct: 453 YCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTY-SVIINCLGKAGHLAAAHKLFCEM 511
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + PN TY+ I+ + N + K Y +AGF + TY ++
Sbjct: 512 VE-QGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGY 570
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + + EM +P P+ +++ +++ + + +L G + N
Sbjct: 571 LDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNS 630
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + + ++ + L+++ + +P +
Sbjct: 631 LLSAFLRVHKLADAYNLLQSMLELGLNPSL 660
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 31/347 (8%)
Query: 80 SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
S + +KA +L+W + LK + + Y LI KV ++ A+ VF M +G+
Sbjct: 161 SCKKQQIEKAISLLDWMWSQNLKPD---VFSYGTLINGMVKVGDLLGALKVFDEMSVRGV 217
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
D +N LI GD ++E +V PN TY+ I+G G D
Sbjct: 218 VADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESL 277
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + ++ TY SLIHG +A + D R Y+E++ ++ +L G
Sbjct: 278 EIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGF 337
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQK-LVKCYCELGRVDELEEQLETLTKCNQSPE 318
C K+ +SF +++ G ++ L+K E G+V+E E L K PE
Sbjct: 338 CRAGKIK--ESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPE 395
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD---- 374
+ G++ ++ L GR+ K FK AED + +Y + D
Sbjct: 396 STTY---GVL-IHGLCKN--------GRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCK 443
Query: 375 --RLDLFLDHI----KGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
R+D + + K YKL + L+ G+ RA KL+ IN
Sbjct: 444 EGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRA---SKLEDAIN 487
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ +F E K D+ ++S++ G + A+S+ M
Sbjct: 399 YGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQM- 457
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
YK + + I+GF ++ ++ G S + +Y +LI G KA F
Sbjct: 458 DKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERF 517
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
F +EM+ P + +++GLC +K++ + + L G+K + M L
Sbjct: 518 SEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNIL 577
Query: 291 VKCYCELGRVDE 302
+ C + ++++
Sbjct: 578 MHGLCSVCKLED 589
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 108 LDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LD + C ++G V+ + A++ F ME +G P +N+LI LC + +
Sbjct: 464 LDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKG-LCKAERFSEAYS 522
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGS 224
F + +E+KP+ T + G ++ A+N W A + GF ++ Y L+HG
Sbjct: 523 FVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQA-LDKGFKPDITMYNILMHGL 581
Query: 225 L-----------------------------------KARDFDSVDRFYEEMMSLGIIPSI 249
K RD++ ++ ++ G+ P I
Sbjct: 582 CSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDI 641
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++GLC+ ++ FL L G
Sbjct: 642 ISYNITIKGLCSCSRISDAIEFLNDALNRG 671
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 36/191 (18%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY--- 202
+N LI +G V A+S++E++ + +P S TY I G G ++ K +
Sbjct: 364 YNILIKGLFENGKVEEAISIWELLCK-KGCRPESTTYGVLIHGLCKNGRLNKALKIFKEA 422
Query: 203 ---------------------------AANIA-----AGFSVNVQTYESLIHGSLKARDF 230
A +I G+ ++ LI+G ++A
Sbjct: 423 EDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKL 482
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+ EM G P+I +++GLC + SF+K +L WK + L
Sbjct: 483 EDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLL 542
Query: 291 VKCYCELGRVD 301
+ C+ +++
Sbjct: 543 MDGLCQEKKIE 553
>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 846
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 4/215 (1%)
Query: 109 DEYACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C I G + A+++ ++ GIK +++ L+ A LC A F
Sbjct: 403 DNVTCRIVFQGYTREGKLLSALNMVAELQRFGIKIPENLYDYLLVA-LCKEGRPFAARSF 461
Query: 167 EIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
I +S + +Y P TY S NV+ + +N+ TY+++I
Sbjct: 462 LIRISQDGDYVPEMSTYIKLAESLCSFNNVEEALILKSEMAKKSMKLNLTTYKAIISCLC 521
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ + + EEM+SLGI+P + I ++ G C +D+ S LKF +
Sbjct: 522 RVKRTSEAENLLEEMVSLGILPDLEIKRALINGYCEENDVDKAVSLLKFFAKEFQVYDTE 581
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+VK +CE+G V EL E + L K P L
Sbjct: 582 SYNAIVKVFCEVGNVAELMELQDKLVKIGYVPNSL 616
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +G +PD +N LI + A L++IM PN +Y A ++G G
Sbjct: 289 MEEEGFEPDLVTYNILINGYCKKRRLEDAFYLYKIM-GIRGVVPNLISYSALMNGLCKEG 347
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR-FYEEMMSLGIIPSIPIL 252
+ ++ + + G +V +Y +LI G K + R EM+ +GI P
Sbjct: 348 KIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGGKMQMCRSLLHEMIGIGIRPDNVTC 407
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
V +G KL + + L G KI EN+ L+ C+ GR
Sbjct: 408 RIVFQGYTREGKLLSALNMVAELQRFGIKIPENLYDYLLVALCKEGR 454
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 18/207 (8%)
Query: 109 DEYACLIALSGKVQNVP--FAM----HVFTSMEAQGIKP------DSAVFNSLICACLCS 156
D Y CLI + P F M +V M +G++ S V N + C CL +
Sbjct: 177 DVYKCLIDCTEDCNWNPVIFDMLIKAYVKLGMVEKGLETFWKNVEGSFVPNVVACNCLLN 236
Query: 157 G-----DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G + ++E M ++ N T++ G+ D +N + GF
Sbjct: 237 GLSKINYIGECWEVYEEMGRLGIHR-NGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFE 295
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++ TY LI+G K R + Y+ M G++P++ ++ GLC K+
Sbjct: 296 PDLVTYNILINGYCKKRRLEDAFYLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQL 355
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELG 298
++ G + L+ YC+ G
Sbjct: 356 FNQMVQRGIDPDVVSYNTLISGYCKEG 382
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Query: 158 DVVTALSLFEIMVS-SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+VV+ +++ ++ +E+ N +D I + LG V+ + + N+ F NV
Sbjct: 171 NVVSYDDVYKCLIDCTEDCNWNPVIFDMLIKAYVKLGMVEKGLETFWKNVEGSFVPNVVA 230
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
L++G K YEEM LGI + + LC D+V FL+ +
Sbjct: 231 CNCLLNGLSKINYIGECWEVYEEMGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKME 290
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G++ + L+ YC+ R+++
Sbjct: 291 EEGFEPDLVTYNILINGYCKKRRLED 316
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 3/221 (1%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDV 159
++G L Y+ L+ K + A +F M +GI PD +N+LI C G +
Sbjct: 326 IRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGGKM 385
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
SL M+ +P++ T G++ G + + A G + Y+
Sbjct: 386 QMCRSLLHEMIGI-GIRPDNVTCRIVFQGYTREGKLLSALNMVAELQRFGIKIPENLYDY 444
Query: 220 LIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
L+ K R F + +P + K+ E LC+ ++ +
Sbjct: 445 LLVALCKEGRPFAARSFLIRISQDGDYVPEMSTYIKLAESLCSFNNVEEALILKSEMAKK 504
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
K+N + ++ C C + R E E LE + P++
Sbjct: 505 SMKLNLTTYKAIISCLCRVKRTSEAENLLEEMVSLGILPDL 545
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+H+ SME +G K + +++SLI G A+ L++ M + + KPN Y AFI
Sbjct: 333 GVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM-AEKGCKPNVVVYGAFI 391
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G D ++ GF N TY SL+ G K D ++EMMS +
Sbjct: 392 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMR 451
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ +L GLC +L + +LG G K + ++K C++G VD+
Sbjct: 452 HNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDK 507
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 7/253 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + L Y +I K+ + A+ F M + PD +++L+ V
Sbjct: 168 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDE 227
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + M +E PN T++ I S G++ K G N TY +LI
Sbjct: 228 AVFLLDEM-QAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG D E+M+S +P+ ++ GL +R+ + L + G K
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 346
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDD 339
NE + L+ + G+ + + + + P V+++ F G+ R ++ D+
Sbjct: 347 ANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCR----DEKPDE 402
Query: 340 VEYSVGRMGKQGL 352
E + M +G
Sbjct: 403 AEDILQEMLSKGF 415
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 146 FNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
FNS++ + GD A + + +S+ ++PN TY+ I LG +D +
Sbjct: 139 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 198
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ +V TY +L++G K R D +EM + G +P+ +++ L
Sbjct: 199 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 258
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL--TKC 313
L R + + G NE L+ C G++D+ LE + +KC
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKC 310
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + F++ +L+ + +KA LV + + + ++ N C + SG+++
Sbjct: 414 GFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE- 472
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYD 183
A+ V+T M +G+KPD ++S+I G V L LF E+ + +P+ TY+
Sbjct: 473 --ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 530
Query: 184 AFISGFSSLGNV 195
+ N+
Sbjct: 531 ILFNALCRQDNL 542
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 160/362 (44%), Gaps = 21/362 (5%)
Query: 62 VDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
+DI+A+ S LIT+ S+ + +++ +L++ +G L Y ++ + GK+
Sbjct: 218 IDIYAYTS-------LITAYASNGRYREAVMVFKKLEE--EGCRPTLITYNVILNVYGKM 268
Query: 122 QNVPFA--MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+P++ + SM++ G+ PD +N+LI +C A +FE M ++ + P+
Sbjct: 269 -GMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAG-FSPDK 326
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFY 237
TY+A + + + A+GF+ ++ TY SLI S ARD D
Sbjct: 327 VTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI--SAYARDGLLDEAMELK 384
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ GI P + +L G K D + + G + N L+K +
Sbjct: 385 SQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNR 444
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G E+ + E + C P+++ ++ ++ ++ + +V M + G
Sbjct: 445 GNFVEMMKVFEEIKICECVPDIVT--WNTLLAVFGQNGMDSEVSGVFKEMKRAGF-VPER 501
Query: 358 EDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+ +I +Y RC +D+ + ++ + +TY+ ++A R GL + + V+ E
Sbjct: 502 DTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAE 561
Query: 417 MK 418
MK
Sbjct: 562 MK 563
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 148/360 (41%), Gaps = 7/360 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
L ++ F S ++++LI++ + L+ ++ K KG + + Y L++
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK--KGIKPDVFTYTTLLSGF 406
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K +AM VF M G +P+ FN+LI G+ V + +FE + E P+
Sbjct: 407 EKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE-EIKICECVPD 465
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ ++ F G ++ + AGF T+ +LI + FD Y
Sbjct: 466 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYR 525
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+ G+ P + VL L ++ + L + G K NE L+ Y
Sbjct: 526 RMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGK 585
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
V+ + E + P+ +L ++ +Y+ SD L + E + + +QG S
Sbjct: 586 EVERMSALAEEIYSGIIEPQAVL--LKTLVLVYSKSDLLTETERAFLELREQGFS-PDIT 642
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ ++ Y R + + L+ IK S + TY+ L+ Y R K + ++ E+
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI 702
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 5/256 (1%)
Query: 48 LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSS-PKKAQLVLEWRLDKMLKGNES 106
+ +P S+I +DS+ ++++ LI+S + S ++A V E + G
Sbjct: 268 MGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE---EMKAAGFSP 324
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
Y L+ + GK + AM V MEA G P +NSLI A G + A+ L
Sbjct: 325 DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELK 384
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
MV + KP+ TY +SGF G D K + AG N+ T+ +LI
Sbjct: 385 SQMV-KKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGN 443
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+F + + +EE+ +P I +L V K + G+ +
Sbjct: 444 RGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDT 503
Query: 287 AQKLVKCYCELGRVDE 302
L+ Y G D+
Sbjct: 504 FNTLISAYSRCGFFDQ 519
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 16/219 (7%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A +I++ GK FA + + G+ D + SLI A +G A+ +F+ +
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFK-KLE 247
Query: 172 SEEYKPNSKTYDAFISGFSSLGN--------VDAMNKWYAANIAAGFSVNVQTYESLIHG 223
E +P TY+ ++ + +G VD+M ++G + ++ TY +LI
Sbjct: 248 EEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMK-------SSGVAPDLYTYNTLISS 300
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ ++ +EEM + G P +L+ R+ LK + G+ +
Sbjct: 301 CRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPS 360
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ Y G +DE E + K P+V +
Sbjct: 361 IVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTY 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 1/186 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F + QG PD N+++ + +V+ + + + P+ TY++ + +S
Sbjct: 629 FLELREQGFSPDITTLNAMV-SIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ + IA G ++ ++ ++I + R + EM G+ P +
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVI 747
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ + +K+++ G K N+N L+ +C+L R DE + L
Sbjct: 748 TYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNL 807
Query: 311 TKCNQS 316
+ S
Sbjct: 808 RNLDPS 813
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G L Y L+ + + ++ + + + A+G+KPD FN++I A +G + A
Sbjct: 671 GFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEA 730
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYE 218
+F M P+ TY+ FI+ ++S + +D + K+ N G N TY
Sbjct: 731 SRIFAEM-KDFGLAPDVITYNTFIASYASDSMFIEAIDVV-KYMIKN---GCKPNQNTYN 785
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
SLI K D F + +L PS+ E+ RR L+R+
Sbjct: 786 SLIDWFCKLNRRDEASSFISNLRNLD--PSVTKDEE-------RRLLERL 826
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ + I PD FN+LI A G + A + +M+ + KP+ TY++ I
Sbjct: 257 AFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKAC-IKPDVVTYNSLI 315
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ L V + + +G + NV+TY ++I G K + D +EEM +I
Sbjct: 316 DGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMI 375
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++GLC L+R + K + G + + L+ C+ GR++ +E
Sbjct: 376 PDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEF 435
Query: 307 LETL 310
+ L
Sbjct: 436 FQRL 439
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 3/199 (1%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSK 180
++ P + +F E+ G PD N L+ C C +T A S+ ++ Y PN+
Sbjct: 77 KHYPTVISLFKKFESNGATPDLCTLNILM-NCFCHLTHITFAFSVLANILK-RGYHPNAI 134
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T + I G G + ++ +A GF +N +Y +LI+G K + +V R ++
Sbjct: 135 TLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKL 194
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ P + + ++ LC + L ++ G N LV +C +G +
Sbjct: 195 EGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHL 254
Query: 301 DELEEQLETLTKCNQSPEV 319
E L + N +P+V
Sbjct: 255 KEAFSLLNEMKLKNINPDV 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 22/206 (10%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS--EE---------- 174
AM + + ME +G PD+ F ++ICA + A + M++ +E
Sbjct: 467 AMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAK 526
Query: 175 ----------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
KP+ TY + G+ + + + + G + NVQ Y +I G
Sbjct: 527 IVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGL 586
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K + D +EEM + P+I +++ LC L+R + LK + G + +
Sbjct: 587 CKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDV 646
Query: 285 NMAQKLVKCYCELGRVDELEEQLETL 310
L+ C+ GR++ +E + L
Sbjct: 647 YSYTILLDGLCKSGRLEGAKEIFQRL 672
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 1/173 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M IKPD + +L+ ++ A +F M + PN + Y I G
Sbjct: 528 VLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM-AQMGVTPNVQCYTIMIDGL 586
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
VD + N+ TY SLI K + +EM GI P +
Sbjct: 587 CKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDV 646
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L+GLC +L+ K + LL G+ +N + ++ C+ G DE
Sbjct: 647 YSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDE 699
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 107/243 (44%), Gaps = 15/243 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + V AM +F M+ + + PD + SLI + + A++L + M
Sbjct: 346 YTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM- 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ +Y + G ++ +++ + G+ +NVQTY +I+G KA F
Sbjct: 405 KEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLF 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+M G +P + ++ L + + D+ + L+ ++ G + A+K+
Sbjct: 465 GEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQ----EARKV 520
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
R+ E + L +TK P+V+ + ++ Y L + L +Y M +
Sbjct: 521 --------RLKEAKIVLAVMTKACIKPDVVT--YGTLMDGYFLVNELKHAKYVFYSMAQM 570
Query: 351 GLS 353
G++
Sbjct: 571 GVT 573
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K V A +F M G+ P+ F +LI G + AL FEIM
Sbjct: 299 YSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIM- 357
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P+ TY+A I+G G++ K I GF + T+ +L+ G K D
Sbjct: 358 KDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDM 417
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS + M+ GI ++ GLC ++ + LK +L G K ++ +
Sbjct: 418 DSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMV 477
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ C+C+ G V + L+ + + + P V+
Sbjct: 478 IDCFCKKGDVKMGAKLLKEMQRDGRVPGVV 507
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ +V A VF + +G++P FN+LI S +V L +M SE P+
Sbjct: 238 KIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVM-ESERISPDV 296
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY A I+G V+ N + G N T+ +LI G K D R +E
Sbjct: 297 FTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEI 356
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M GI P + ++ GLC L + L ++G G+K ++ L+ C+ G
Sbjct: 357 MKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGD 416
Query: 300 VDELEE 305
+D E
Sbjct: 417 MDSALE 422
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 3/222 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
T+L K ++ L R +++K G L Y LI + ++ A + M
Sbjct: 335 TTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIG 394
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G KPD F +L+ C GD+ +AL + + MV E + + + A ISG G V
Sbjct: 395 NGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVE-EGIELDDVAFTALISGLCRDGRVR 453
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ ++AG + TY +I K D + +EM G +P + ++
Sbjct: 454 DAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALM 513
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
G C + ++ K L +L N+ L+ +C+ G
Sbjct: 514 NGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 49/277 (17%), Positives = 103/277 (37%), Gaps = 41/277 (14%)
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNV-------DAMNK-----------------W 201
F + V Y PN ++ + GF +G+V D +++
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYC 272
Query: 202 YAANIAAGF-----------SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ N+ GF S +V TY +LI+G K + + ++EM +G++P+
Sbjct: 273 RSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGV 332
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++G C K+D + + G + + L+ C G + E + L +
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYF 368
P+ + F+ ++ +D RM ++G+ ++ +C
Sbjct: 393 IGNGFKPDKIT--FTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDG 450
Query: 369 RCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
R +R + D + +K TY ++ + + G
Sbjct: 451 RVRDAER--MLKDMLSAGHKPDDPTYTMVIDCFCKKG 485
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 9/278 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV--QNVPFAMHVFTSMEAQGIKPDSA 144
KK +++ +L +++ LD C + G + A +F M+ G P+
Sbjct: 540 KKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVV 599
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKTYDAFISGFSSLGNVDAMN 199
+L+ SG++ AL L + M+S KPN+ +Y I G G D
Sbjct: 600 TCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAR 659
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + A G +V +Y SLIHG ++ + + EM+ +G+ P + +++ L
Sbjct: 660 ELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDML 719
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C K+ L+ ++ G N LVK C R+ E + + K P+V
Sbjct: 720 CKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDV 779
Query: 320 LLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+ + G+ + + L+ + + G+ G +FK
Sbjct: 780 VTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 817
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKT 181
A +F SM+ G +PD+ + +L+ +G++ AL L + M++ + KP +
Sbjct: 401 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 460
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G D + + A G +V +Y +LIHG + ++ + EM+
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML 520
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+GI P + +++ LC + K+ L+ ++ G ++ LVK C R+
Sbjct: 521 DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRIS 580
Query: 302 ELEEQLETLTKCNQSPEVL 320
+ + + K P V+
Sbjct: 581 KATQLFLKMQKLGCMPNVV 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 5/199 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKT 181
A +F SM+ G +PD+ + +L+ +G++ AL L + M++ + KP +
Sbjct: 108 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 167
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G D + + A G +V +Y SLIHG + ++ + EM+
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEML 227
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+GI P + +++ C K+ L+ ++ G ++ L+K C R+
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287
Query: 302 ELEEQLETLTKCNQSPEVL 320
E + ++ K P+ +
Sbjct: 288 EATQLFMSMKKLGCRPDAI 306
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LI + K V A + M +G P++ + +L+ LC D ++ + + +
Sbjct: 712 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG-LCMNDRISEATQLFMKM 770
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY------AANIAAGFSVNVQTYESLIHGS 224
P+ TY + G GN+ + + F +V +Y +I G
Sbjct: 771 QKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGL 830
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K D ++EM +LG+IP++ ++ G C KL+ K ++ G ++N
Sbjct: 831 CKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNA 890
Query: 285 NMAQKLVKCYCELGRVDE 302
++ +C+ G++D+
Sbjct: 891 VTYSVMIHGFCKEGQIDK 908
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 40/212 (18%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-----------------------SEEY 175
I+PD + LI G V+ A L E+M+ SE
Sbjct: 50 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 109
Query: 176 -----------KPNSKTYDAFISGFSSLGNVDAMNKWYAA--NIAAGFSVNVQ----TYE 218
+P++ TY + G GN++ + + N + + + +Y
Sbjct: 110 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 169
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+I G K R D ++EM + G++P + ++ G C K ++ K +L
Sbjct: 170 IIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDV 229
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETL 310
G + + + L+ +C+ G+V E E LE +
Sbjct: 230 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVM 261
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 79/238 (33%), Gaps = 43/238 (18%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+AQG+ PD + SLI SG A LF M+ +P+ T I
Sbjct: 184 ARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVG-IQPDVTTSGVLI 242
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G V N+ + G +++ TY +LI G + + M LG
Sbjct: 243 DMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCR 302
Query: 247 PSIPILEKVLEGLCARRKLD---------------------------------------- 266
P +++GLC K++
Sbjct: 303 PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGK 362
Query: 267 --RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ ++ G ++ L+K C R+ E ++ K P+ + +
Sbjct: 363 VIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 420
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTA--LSLFEIM-------VSSEEYKPNSKTYDA 184
M G+ PDS FN LI CLC+ V ++ IM + + +P+ T
Sbjct: 1 MRLAGLFPDSFTFNILI-NCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSM 59
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G V N+ I G +++ TY +LI G + M LG
Sbjct: 60 LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLG 119
Query: 245 IIPSIPILEKVLEGLC 260
P +++GLC
Sbjct: 120 CRPDAITYGTLMKGLC 135
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 9/282 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ M G+ PD N ++ CLC+ + V+ + Y P+ TY+ I G
Sbjct: 112 LYNKMRLAGLSPDLFTLN-ILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGL 170
Query: 190 SSL---GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
L G+ D + + A G NV +Y SL+HG A + R + EM+ G+
Sbjct: 171 YGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQ 230
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL---GGGWKINENMAQKLVKCYCELGRVDEL 303
P++ +++ LC K+ + S K L G + NE L+ YC++ +V+E
Sbjct: 231 PNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 290
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
+ + + P V +S ++ + ++ D G M G+S S V +
Sbjct: 291 MNLYNEMPQVGKRPNV--KTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFL 348
Query: 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ ++LF + ++KL +Y L+ G +AG
Sbjct: 349 DGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAG 390
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 118/255 (46%), Gaps = 9/255 (3%)
Query: 102 KGNESCLDEYACLIAL---SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+G + L ++ LI + GK+ ++ A +F SM ++G + + + LI
Sbjct: 227 QGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWK 286
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V A++L+ M + +PN KTY ++G G V NK + A+G SV+ Y
Sbjct: 287 VEEAMNLYNEMPQVGK-RPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYV 345
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+ G K + E+ S ++++GLC K++ F K L
Sbjct: 346 IFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQE 405
Query: 279 GWKINENMAQKLVKCYCELGRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
G + N ++ +C + +VD+ L E++E + + +P+++ ++ ++R + S+
Sbjct: 406 GLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIIT--YNTLLRGFCESN 463
Query: 336 RLDDVEYSVGRMGKQ 350
+L++V + +M K+
Sbjct: 464 KLEEVVNLLHKMFKR 478
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 9/286 (3%)
Query: 23 FDR---LLCNTNTNSTSVS--SSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDA 76
FD+ LL N S + + N LI+ L V V ++ L + F + ++++
Sbjct: 472 FDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNS 531
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
+I + + + ++ KG + Y I K A+ + +
Sbjct: 532 IINGFIKAGMMGSAFAVYQQM--CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRC 589
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G++PD A +NSLI G++ AL + +M+ + PN Y++FI+G+ +L ++
Sbjct: 590 KGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLK-DGLLPNISVYNSFITGYKNLKMME 648
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++Y I G ++ TY +LI G K + + Y EM++ G IP +
Sbjct: 649 EALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALT 708
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GLC +D + L + + N M L+ Y G++ E
Sbjct: 709 HGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQE 754
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 15/237 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----VSSEEYKPNSKTY 182
A+ ++T M +G P+ + +L+ + A +L M VS +Y TY
Sbjct: 440 AVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY-----TY 494
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +G V + + GF TY S+I+G +KA S Y++M +
Sbjct: 495 NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCA 554
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P+I ++G C D L + G + + L+ +C+ G +
Sbjct: 555 KGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSH 614
Query: 303 LEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
+ L + K P + ++ F +G L + + L E +M K+G+ +A
Sbjct: 615 ALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYE----KMIKEGIDLDTA 667
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G+ P + FN +I L A+SLF+ M S P++ TY+ I
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG--IPDAFTYNILIHWLCQRR 400
Query: 194 NV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ +A+N W N G + TY SL+ D + Y EM G P++
Sbjct: 401 KIREALNLWEKMN-ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+++G + D+ + L + G N+ L+ C +GRV E+ E L+
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLK 515
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M GI PD+ +N LI + AL+L+E M + KP TY + +
Sbjct: 371 AVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKM-NETGVKPYIVTYHSLL 428
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G +D K Y GF+ NV TY +L+ G + FD EM G+
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVS 488
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLK 273
+ ++ GLC ++ V LK
Sbjct: 489 CNDYTYNTLINGLCVVGRVCEVGEMLK 515
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M +GI D+A + +LI G+V AL L+ MV+ P+ T+ A
Sbjct: 650 ALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI-PDHITFTALT 708
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++D K NV Y LI+G L+ R ++EM+ I+
Sbjct: 709 HGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIM 768
Query: 247 P 247
P
Sbjct: 769 P 769
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV FA+ +++ M A+G PD F +L +GD+ A L + M
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEM- 727
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ + +PN Y+ I+G+ G + + + + + TY+ L+
Sbjct: 728 NRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 113/294 (38%), Gaps = 10/294 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+H+ + A G K + +L+ +V AL +FE + + P TY I
Sbjct: 266 ALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR-DGLVPTDVTYTVLI 324
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G + + G + + +I G L + + ++EM GI
Sbjct: 325 RGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI- 383
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P ++ LC RRK+ + + + G K L+ CYC G +DE +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--I 364
+ +P V+ ++ +++ + D + M + G+S ++ +
Sbjct: 444 YTEMPGKGFTPNVVT--YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGL 501
Query: 365 CSYFR-CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
C R C + L F + TY+ ++ G+ +AG+ G +V +M
Sbjct: 502 CVVGRVCEVGEMLKRFETE---GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 95/234 (40%), Gaps = 8/234 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKP 177
GK Q A F ME + + PD + +LI AC GD LSL+ M + E P
Sbjct: 216 GKTQK---AFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPP 272
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ Y I G G + I G VNV Y +LI + K + +
Sbjct: 273 HA--YSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLF 330
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E M G+ P + V+ +C +LD +L+F G +N + L+ +
Sbjct: 331 ERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKA 390
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
GRV E E+ E + K P+ + ++ +I A + D+ RM +G
Sbjct: 391 GRVHEAEKLFEEMVKKGCPPDS--YCYNALIDALAKCGKTDEALAFFKRMEDEG 442
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 40/243 (16%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+KM+ KG + + Y LI + K N+ AM +F M+ +G++PD + ++ C+C
Sbjct: 295 FEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTY-GVVVNCMC 353
Query: 156 ------------------------------------SGDVVTALSLFEIMVSSEEYKPNS 179
+G V A LFE MV + P+S
Sbjct: 354 KSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVK-KGCPPDS 412
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y+A I + G D ++ G V TY +I+G + + + ++
Sbjct: 413 YCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDM 472
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ GI P+ + GLC K+ R L L G I E + ++ C+ GR
Sbjct: 473 MIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMG-VIPETAFEDMLNVLCKAGR 531
Query: 300 VDE 302
+ E
Sbjct: 532 IKE 534
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 4/230 (1%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI G + V + V+ M+ G++P +N L+ + S + +A + E+M +
Sbjct: 138 LIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVM-ENG 196
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ P+ TY+ I G+ +G + + + + TY +LI DFD
Sbjct: 197 KIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLC 256
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
Y EM G+ V+ GLC K + + ++ G K+N + L+
Sbjct: 257 LSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDS 316
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD-VEY 342
+ G + E E + K P+V+ + ++ S RLD+ +EY
Sbjct: 317 NAKCGNMGEAMLLFERMKKEGLEPDVVT--YGVVVNCMCKSGRLDEAMEY 364
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +++ A+ VF ME +GI+ D+ +N+LI SG A L MV + PN
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDPNV 254
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I F GN+ Y I NV TY SLI+G ++
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314
Query: 240 MMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKF----LLGGGWKINENMAQKLVKCY 294
M+S G P + ++ G C ++R D +K F + L+G + N L+ Y
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYN-----TLIHGY 369
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G+++ ++ + C SP+++ +
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTY 397
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFE 167
+ LI K N+ A +++ M + + P+ +NSLI C C GD A +F+
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD---AKYMFD 313
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MVS + P+ TY+ I+GF V+ K + G + TY +LIHG +A
Sbjct: 314 LMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 372
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + + M+ G+ P I +L+ LC K+++ ++ L ++
Sbjct: 373 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 432
Query: 288 QKLVKCYCELGRVDELEEQ---LETLTKCNQSPEVLLHF--FSGIIR 329
+++ C R D+L+E +LT+ P+ + + SG+ R
Sbjct: 433 NIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCR 476
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 117 LSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
L+G Q F A+ + SM+ G P+ ++N++I + D+ AL +F M +
Sbjct: 156 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM-EKKG 214
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ ++ TY+ ISG S+ G + + NV + +LI +K +
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
Y+EM+ ++P++ ++ G C L K ++ G + L+ +
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334
Query: 295 CELGRVDE 302
C+ RV++
Sbjct: 335 CKSKRVED 342
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 124/318 (38%), Gaps = 23/318 (7%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ ++ + K+ ++++ ME GI D F LI C C CS + L ++
Sbjct: 81 DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKM 140
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGN--------VDAMNKWYAANIAAGFSVNVQTYESL 220
M ++P+ T + ++GF GN VD+M+ + GF NV Y ++
Sbjct: 141 M--KLGFRPSIVTLGSLLNGFCQ-GNRFQEAVSLVDSMDGF-------GFVPNVVIYNTV 190
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+G K RD ++ + M GI ++ GL + L+ ++
Sbjct: 191 INGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
N L+ + + G + E + + + + P V ++ +I + + L D
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFT--YNSLINGFCIHGCLGDA 308
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVA 399
+Y M +G F +I + + D + LF + TY+ L+
Sbjct: 309 KYMFDLMVSKG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 367
Query: 400 GYRRAGLSGKLDSVINEM 417
GY +AG V N M
Sbjct: 368 GYCQAGKLNVAQKVFNRM 385
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 116/264 (43%), Gaps = 10/264 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLD---EYACLI 115
DS++ S+ +++ A+I L ++ A L LE +KG LD Y+ ++
Sbjct: 165 DSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLE-----KIKGRNCDLDVVIAYSTIM 219
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
K V A+++F+ M ++GI+PD +NSLI G A +L M+ +
Sbjct: 220 DSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMR-KGI 278
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
PN +T++ + F G + + G +V TY S+I G +
Sbjct: 279 MPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVK 338
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+E M+ G +P++ ++ G C + +++ L ++ G + L+ +C
Sbjct: 339 VFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFC 398
Query: 296 ELGRVDELEEQLETLTKCNQSPEV 319
+ G+ + +E T+ + +Q P +
Sbjct: 399 KAGKPEAAKELFCTMHEHDQHPNL 422
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 9/244 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M +G P+ ++SLI + ++ AL L MV+S P+ T+ I
Sbjct: 336 AVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSG-LNPDVVTWSTLI 394
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G +A + + N+QT ++ G K + + EM + +
Sbjct: 395 GGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLE 454
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ I VL+G+C+ KL+ + L G KI+ ++K C+ G +D+ E
Sbjct: 455 LNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENL 514
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
L + + P + F G+++ Y +S +Y + GK GLS A E++I
Sbjct: 515 LMKMEENGCLPNEFTYNVFVRGLLQRYDIS---RSTKYLLLMKGK-GLS-ADATTTELLI 569
Query: 365 CSYF 368
SYF
Sbjct: 570 -SYF 572
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVT 161
G++S Y +I K + A+ ++ + D + S I LC G V
Sbjct: 171 GHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCE 230
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL+LF M +S+ +P+ Y++ I G + G + G NVQT+ L+
Sbjct: 231 ALNLFSGM-TSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLV 289
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGGW 280
K M+ +G+ P + V+ G C ++ D VK F + ++ G+
Sbjct: 290 DNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVF-ELMIHKGF 348
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
N L+ +C+ +++ L + +P+V+
Sbjct: 349 LPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVV 388
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 8/228 (3%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
CL L+ V F V M G+ P F +LI G+V A + F +
Sbjct: 115 CLCHLNHTV----FGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARA-ARFADSLED 169
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL-KARDFD 231
++ NS TY A I+G G+ + ++V S I SL K
Sbjct: 170 MGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVC 229
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ M S GI P + ++ GLC + + L ++ G N LV
Sbjct: 230 EALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLV 289
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+C+ G + + + + P+V+ ++ +I + L ++ D
Sbjct: 290 DNFCKDGMISRAKTIMGFMVHVGVEPDVVT--YNSVISGHCLLSQMGD 335
>gi|334187948|ref|NP_001190400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332006093|gb|AED93476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 156/382 (40%), Gaps = 32/382 (8%)
Query: 65 FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
N + +++ LI + P+++ +L+ L++ + + L+ K +
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
V A V ME G++PD+ +N++ + G+ V A S + E MV E+ KPN +T
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR------- 235
+ G+ G V ++ N+ + SLI+G ++ D D +D
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVTLTLLL 323
Query: 236 --FYEEMMSLG----------------IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
F EE+ +G + + V+ + +++ K ++
Sbjct: 324 MSFNEEVELVGNQKMKVQVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVK 383
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G K + + L K Y + EE LETL P V++ F+ +I + + +
Sbjct: 384 AGVKPDAHAYSILAKGYVRAKEPKKAEELLETLI-VESRPNVVI--FTTVISGWCSNGSM 440
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDF 396
DD +M K G+S + + E ++ Y + + L ++G K +T+
Sbjct: 441 DDAMRVFNKMCKFGVS-PNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLL 499
Query: 397 LVAGYRRAGLSGKLDSVINEMK 418
L +R AGL+ + + IN +K
Sbjct: 500 LAEAWRVAGLTDESNKAINALK 521
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 75/367 (20%), Positives = 138/367 (37%), Gaps = 42/367 (11%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P +AQ V + + G+ L Y L+A + + + +E G K
Sbjct: 56 IERGRPHEAQTVFKTLAET---GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK 112
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
DS FN++I A SG++ A+ + + P + TY+ I G+ G + ++
Sbjct: 113 LDSIFFNAVINAFSESGNMEDAVQAL-LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 201 WYAANIAAG---FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N++T+ L+ K + + ++M G+ P +
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 258 GLCARRKLDRVKSFL--KFLLGGGWKINENMAQKLVKCYCELGRVDE----LEEQLETLT 311
+ + R +S + K ++ K N +V YC GRV + + E
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRV 291
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDR--LDDVEYS------------VG--RMGKQGLSFK 355
+ N L+ F S I + DR +D+V + VG +M Q L+
Sbjct: 292 EAN-----LVVFNSLINGFVEVMDRDGIDEVTLTLLLMSFNEEVELVGNQKMKVQVLTLM 346
Query: 356 SAEDVEMVICSY------FRCAAY--DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+V+ + +Y + A Y +F + +K K Y L GY RA
Sbjct: 347 KECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEP 406
Query: 408 GKLDSVI 414
K + ++
Sbjct: 407 KKAEELL 413
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 136/312 (43%), Gaps = 17/312 (5%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LIA G++ +A VF M G++P +AV+N+LI A + +G V TA F+ M ++
Sbjct: 147 LIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQM-PAD 205
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P+ TY+ + G G +D + AG NV TY L+ G A +
Sbjct: 206 GCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDA 265
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
++ M G+ P+ ++ G A R L R K+++ G + + +
Sbjct: 266 VHVFDTMKEKGVSPNEASYRTLVHG--AFRCLGRHKAYVMLTEWLGREPPPHHSAWQCML 323
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI-----IRLYALSDRLDDVEYSVGRMG 348
YC L + + +E +E K N +L + GI ++ LSD ++ V + G
Sbjct: 324 YC-LSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGG 382
Query: 349 KQGLSFKSAEDVE-MVICSYFRCAAYDRLDLFLDHIKGSYKLRRAT-YDFLVAGYRRAGL 406
G DV MVI S C + + + +L + L T Y+ ++ + +AG
Sbjct: 383 NPGF------DVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGA 436
Query: 407 SGKLDSVINEMK 418
K +I EM+
Sbjct: 437 VDKAAEIIKEMR 448
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 10/251 (3%)
Query: 62 VDIFAFNSSQFSWDALITSLQS-----SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116
+D F +D I ++S SS K + LD +L G S Y +I
Sbjct: 374 LDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTS----YNMVID 429
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K V A + M +G+ P+ FN+LI G+V A ++ + M+
Sbjct: 430 CFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLK-MLMEHGLI 488
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ T+ + I+G +D + G N TY L+H A +
Sbjct: 489 PDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDL 548
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+M GI P + C +K+D+ ++ +L G + L+K C+
Sbjct: 549 LNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCD 608
Query: 297 LGRVDELEEQL 307
R+DE +E L
Sbjct: 609 ERRIDEAKEIL 619
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 5/193 (2%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K A+++ E R +L L + LI+ K+ NV A V + G+ PD F
Sbjct: 439 KAAEIIKEMREKGVLPN----LVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITF 494
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
SLI + + A F M + +PN+ TY+ + S G+V+
Sbjct: 495 TSLINGLCHTHQLDDAFDCFNEM-AEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMK 553
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + + ++ + I + + D + M+ LG++P +++ LC R++D
Sbjct: 554 KDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRID 613
Query: 267 RVKSFLKFLLGGG 279
K L + G
Sbjct: 614 EAKEILLLMESSG 626
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 109/296 (36%), Gaps = 5/296 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI S + V A F M A G +PD +N+L+ G + AL L M
Sbjct: 179 YNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQM- 237
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN TY + GF + G + + G S N +Y +L+HG+ +
Sbjct: 238 EGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGR 297
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
E + P + +L L V K + G+ ++ + +
Sbjct: 298 HKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIV 357
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C + + +L L+ K +P ++ +I+ + + RM
Sbjct: 358 VSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIM--VIKSLLGCKSSSKANHYLKRMVLD 415
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAG 405
GL MVI + + A D+ + ++ L T++ L++GY + G
Sbjct: 416 GL-LSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLG 470
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+Y+ I F G VD + G N+ T+ +LI G K + + + +
Sbjct: 423 SYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKML 482
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
M G+IP I ++ GLC +LD + G + N + L+ C G V
Sbjct: 483 MEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHV 542
Query: 301 DELEEQLETLTKCNQSPE 318
++ + L + K +P+
Sbjct: 543 NKAIDLLNKMKKDGITPD 560
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 57/134 (42%)
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I+ + LG ++ + G + Y +LI S++A D+ +++M +
Sbjct: 146 ALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPAD 205
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G P ++ G+C R +D ++ + G G + N LV +C GR ++
Sbjct: 206 GCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDA 265
Query: 304 EEQLETLTKCNQSP 317
+T+ + SP
Sbjct: 266 VHVFDTMKEKGVSP 279
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 18/301 (5%)
Query: 5 CRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRL-LQVPVSQIKTTLDSVD 63
CR L +A S+ ++ L ++ NT T ST LI+ L L+ VS+ +D +
Sbjct: 136 CRKLCLAFSAMGKIIKLGYEP---NTITFST-------LINGLCLEGRVSEALELVDRMV 185
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQ 122
+ + L+ L S + ++L +DKM++ G + Y ++ + K
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLL---IDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
AM + ME + IK D AV S+I LC G + A +LF M + N T
Sbjct: 243 QTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIIT 300
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I GF + G D K I + NV T+ LI +K + ++EM+
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
GI P +++G C LD+ + ++ G N L+ YC+ R+D
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 420
Query: 302 E 302
+
Sbjct: 421 D 421
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 5/211 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M + I P+ F+ LI + + G + A L + M+ P++ TY + I GF
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGF 378
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
++D N+ ++ G N++T+ LI+G KA D + +M G++
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C KL+ K + ++ N + L+ C+ G E E+ LE
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG---ESEKALEI 495
Query: 310 LTKCNQSP-EVLLHFFSGIIRLYALSDRLDD 339
K +S E+ + ++ II + ++DD
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDD 526
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ LSGK AM + M G +P++ + ++ SG A+ L M
Sbjct: 203 LCLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + G + N+ TY LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL + K ++ G + L+ +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ +D+ + ++ + P + F+ +I Y ++R+DD
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNI--RTFNILINGYCKANRIDD 421
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 1/215 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ D+ +N+LI G +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MVS + PN TY + G G + + + + +++ Y +I
Sbjct: 457 AKELFQEMVS-RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG A D + + G+ P + ++ GLC + L + + + G
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L++ + G + + +E L +C S
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 124/323 (38%), Gaps = 7/323 (2%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
+ K+ LVL LKG L + +I + + + A + G +P++
Sbjct: 99 AKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNT 158
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
F++LI G V AL L + MV +KP+ T + ++G G
Sbjct: 159 ITFSTLINGLCLEGRVSEALELVDRMVEM-GHKPDLITINTLVNGLCLSGKEAEAMLLID 217
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G N TY +++ K+ +M I +++GLC
Sbjct: 218 KMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
LD + + G N L+ +C GR D+ + L + K +P V+
Sbjct: 278 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT-- 335
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI 383
FS +I + +L + E M +G++ + + I + + D+ + +D +
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL-IDGFCKENHLDKANQMVDLM 394
Query: 384 --KGSYKLRRATYDFLVAGYRRA 404
KG R T++ L+ GY +A
Sbjct: 395 VSKGCDPNIR-TFNILINGYCKA 416
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 1/182 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ +F SMEA+G+ P+ V+++LI + + AL + M P++
Sbjct: 186 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM-KKAFCTPDT 244
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G G+V A ++ + AG +V TY LI G KA + D+ +++
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S P++ ++ GLC RR+L + + + + G + + LV C+ G+
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364
Query: 300 VD 301
++
Sbjct: 365 LE 366
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 3/226 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M ++G+ D+ + +LI L +G + A S+++ M
Sbjct: 107 YTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTM- 165
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S+ P+ T I G G + A + + + A G + N Y +LIHG KAR
Sbjct: 166 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M P +++GLC + ++F +L G K + L
Sbjct: 226 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALS 334
+ +C+ G D + ++ SP V+ + SG+ + L+
Sbjct: 286 ISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLT 331
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 36/196 (18%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++L E +++ P TY+A ++G +G ++ + G + +V TY SLI
Sbjct: 53 AVALME-KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 111
Query: 222 HG-SLKARDFDSVDRF----------------------------------YEEMMSLGII 246
G K R F++ F Y+ M S G +
Sbjct: 112 DGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 171
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + L +++GLC ++ K + G NE + L+ C+ ++D E
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231
Query: 307 LETLTKCNQSPEVLLH 322
L + K +P+ + +
Sbjct: 232 LAQMKKAFCTPDTITY 247
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 2/153 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V A F M G KPD +N LI +G+ A +F+ M SS PN
Sbjct: 256 KSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM-SSSRCSPNV 314
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ISG + + +Y G + Y SL+ G K+ + ++E
Sbjct: 315 VTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDE 374
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
M G+ S +++ LC ++D S
Sbjct: 375 MERSGVANS-QTRTRLIFHLCKANRVDEAVSLF 406
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ GK A+ VF +M+ G PD+ V+N LI G V AL L E M
Sbjct: 338 YSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM- 396
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ +TY+ I SS G + ++ S +V TY +L++G K R
Sbjct: 397 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D ++EM + +P + +++ L +++ L+ G N + L
Sbjct: 457 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNAL 516
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C G+VD+ E + + +C+ P+ + +
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITY 548
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 3/229 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALS--GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICAC 153
LD M +GN D A A+ +V+ V AM +F M E PD +N+LI
Sbjct: 76 LDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGY 135
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+GD AL +F + KPN+ ++D + + + + AG +
Sbjct: 136 CKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKAD 195
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V +LIH + + R M + ++ C ++ V SF++
Sbjct: 196 VNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFME 255
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G ++ +++ + GR+ E + E+ P+V +
Sbjct: 256 LARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTY 304
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L + LI K + A+ + G P+S ++N+LI SG V LF+
Sbjct: 475 LTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQ 534
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+S TY + GFS G+ + + G + + TY LI A
Sbjct: 535 DMIECSCF-PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMA 593
Query: 228 RDFDSVDRFYEEMMSLGIIPSI 249
+ ++EM++ G P +
Sbjct: 594 GQVEDAYTLFKEMIAKGFNPDM 615
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI +L + + L RL KM S + Y LI+ + V +F
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYI--YNALISGFCRSGQVDKGYELFQ 534
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M PDS + L+ G A+ L + MV E + P TY+ I S
Sbjct: 535 DMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVR-EGHTPALATYNVLIRSLSMA 593
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESL 220
G V+ + IA GF+ ++QTY +L
Sbjct: 594 GQVEDAYTLFKEMIAKGFNPDMQTYSAL 621
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 10/294 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP--NSKTYDA 184
A +F S + PD +N LI C S + AL+LF+ +E+ + TY
Sbjct: 285 ATQLFESTMTKESVPDVFTYNLLIALCK-SKQLEEALTLFQ---EAEQGGVVLDVFTYSY 340
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ F G + + AG + Y LI K D E+M G
Sbjct: 341 LMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 400
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I+P V++ L + + ++ SF + + L+ +L R DE
Sbjct: 401 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 460
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
+ + + P+ L F +I A + R++D R+ K G + ++ +I
Sbjct: 461 DLFDEMQANKCMPD--LTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA-PNSYIYNALI 517
Query: 365 CSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ R D+ +LF D I+ S TY LV G+ R G + ++ EM
Sbjct: 518 SGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM 571
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +++ A+ VF ME +GI+ D+ +N+LI SG A L MV + PN
Sbjct: 721 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDPNV 779
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I F GN+ Y I NV TY SLI+G ++
Sbjct: 780 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 839
Query: 240 MMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKF----LLGGGWKINENMAQKLVKCY 294
M+S G P + ++ G C ++R D +K F + L+G + N L+ Y
Sbjct: 840 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYN-----TLIHGY 894
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G+++ ++ + C SP+++ +
Sbjct: 895 CQAGKLNVAQKVFNRMVDCGVSPDIVTY 922
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 3/221 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y LI K + A+ + ME +G+ D +N+L+ SG A
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+ M+ P+ T+ A I F GN+D + Y I + N TY S+I+
Sbjct: 231 ARMLRDMMK-RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 223 G-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G + R +D+ + ++ M S G P++ ++ G C R +D + + G+
Sbjct: 290 GLCMHGRLYDA-KKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ L+ YC++G++ + + +P+++ H
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFE 167
+ LI K N+ A +++ M + + P+ +NSLI C C GD A +F+
Sbjct: 782 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD---AKYMFD 838
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MVS + P+ TY+ I+GF V+ K + G + TY +LIHG +A
Sbjct: 839 LMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 897
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + + M+ G+ P I +L+ LC K+++ ++ L ++
Sbjct: 898 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 957
Query: 288 QKLVKCYCELGRVDELEEQ---LETLTKCNQSPEVLLHF--FSGIIR 329
+++ C R D+L+E +LT+ P+ + + SG+ R
Sbjct: 958 NIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCR 1001
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 7/298 (2%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ L+ + ++ ++ ME GI D F LI C C CS + ALS+
Sbjct: 73 DFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCS-RLSFALSVLGK 131
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ Y+P+ T+ + + GF + + + +G+ NV Y +LI G K
Sbjct: 132 MMKLG-YEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNG 190
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + EM G+ + +L GLC + L+ ++ +
Sbjct: 191 ELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFT 250
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ + + G +DE +E + + + + P + ++ II + RL D + + M
Sbjct: 251 ALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT--YNSIINGLCMHGRLYDAKKTFDLMA 308
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+G F + +I + + D + LF + TY+ L+ GY + G
Sbjct: 309 SKG-CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 117 LSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
L+G Q F A+ + SM+ G P+ ++N++I + D+ AL +F M +
Sbjct: 681 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM-EKKG 739
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ ++ TY+ ISG S+ G + + NV + +LI +K +
Sbjct: 740 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 799
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
Y+EM+ ++P++ ++ G C L K ++ G + L+ +
Sbjct: 800 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 859
Query: 295 CELGRVDE 302
C+ RV++
Sbjct: 860 CKSKRVED 867
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 124/318 (38%), Gaps = 23/318 (7%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ ++ + K+ ++++ ME GI D F LI C C CS + L ++
Sbjct: 606 DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKM 665
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGN--------VDAMNKWYAANIAAGFSVNVQTYESL 220
M ++P+ T + ++GF GN VD+M+ + GF NV Y ++
Sbjct: 666 MKLG--FRPSIVTLGSLLNGFCQ-GNRFQEAVSLVDSMDGF-------GFVPNVVIYNTV 715
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+G K RD ++ + M GI ++ GL + L+ ++
Sbjct: 716 INGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 775
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
N L+ + + G + E + + + + P V ++ +I + + L D
Sbjct: 776 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFT--YNSLINGFCIHGCLGDA 833
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVA 399
+Y M +G F +I + + D + LF + TY+ L+
Sbjct: 834 KYMFDLMVSKG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 892
Query: 400 GYRRAGLSGKLDSVINEM 417
GY +AG V N M
Sbjct: 893 GYCQAGKLNVAQKVFNRM 910
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+M+K G + + + L+ K+ N+P A +F M +G++PD + + I L
Sbjct: 389 DEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKL 448
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
GD A + E M++ + P+ TY+ FI G LGN+ ++ + G + T
Sbjct: 449 GDPSKAFGMQEEMLA-RGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVT 507
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI------------------------PIL 252
Y S+IH L A + EM+S GI PS+ +
Sbjct: 508 YTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMH 567
Query: 253 EK-----------VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
EK ++ GLC RK+D+ F + G N+ L+ C LG
Sbjct: 568 EKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQ 627
Query: 302 E 302
E
Sbjct: 628 E 628
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
++ A V+ M GI+P +N+++ + G V AL L + + PN TY
Sbjct: 170 SIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLL-LQMQKMGCLPNDVTY 228
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ ++G S G ++ + + G V+ TY+ LI G + D R EEM+S
Sbjct: 229 NVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLS 288
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK------CYCE 296
G +P++ ++ GLC ++ + L + +N+N+ LV Y
Sbjct: 289 RGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVM------VNKNLMPDLVSYNTLIYGYTR 342
Query: 297 LGRVDE 302
LG + E
Sbjct: 343 LGNIGE 348
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 4/172 (2%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
++ L+ P KA + E + + +G L Y I K+ N+ A + M
Sbjct: 442 IVGELKLGDPSKAFGMQE---EMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLY 498
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+ PD + S+I A L +G + A ++F M+S + P+ TY I ++ G +
Sbjct: 499 NGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIF-PSVVTYTVLIHSYAVRGRLK 557
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G NV TY +LI+G K R D +F+ EM + GI P+
Sbjct: 558 LAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPN 609
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M ++G P +N+++ G V A L ++MV+ + P+ +Y+ I G++ LG
Sbjct: 286 MLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVN-KNLMPDLVSYNTLIYGYTRLG 344
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ +A G +V TY +LI G + D D R +EM+ G P +
Sbjct: 345 NIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFT 404
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ G C L K +L G +
Sbjct: 405 ILVRGFCKLGNLPMAKELFDEMLNRGLQ 432
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 6/243 (2%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD M+ N L Y LI ++ N+ A +F + +G+ P +N+LI
Sbjct: 318 LDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCR 377
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GD+ A+ L + M+ P+ T+ + GF LGN+ + + + G +
Sbjct: 378 MGDLDVAMRLKDEMIKHGP-DPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRF 436
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y + I G LK D EEM++ G P + ++GL L +K +
Sbjct: 437 AYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKM 496
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQ-LETLTKCNQSPEVLLHFFSGIIRLYALS 334
L G + ++ + G + + LE L+K P V+ ++ +I YA+
Sbjct: 497 LYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSK-GIFPSVVT--YTVLIHSYAVR 553
Query: 335 DRL 337
RL
Sbjct: 554 GRL 556
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA-LSLFEIMVSSEEYKPNSKTYDAF 185
A VF M ++GI P + LI + G + A L FE+ + PN TY+A
Sbjct: 524 ARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEM--HEKGVHPNVITYNAL 581
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G + +D K++ A G S N TY LI+ + + R Y++M+ I
Sbjct: 582 INGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 641
Query: 246 IP 247
P
Sbjct: 642 QP 643
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 5/228 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI +Q V A VF+ M G++PD+ FN+LI G A+ F+ +S
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS- 194
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P TY I+G +G A + AG NV TY LI K + +
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEA 254
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ M + I P I +++GLC R+ + L + N LV
Sbjct: 255 LDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDA 314
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
C+ G+V E + +T+T+ P+V+ +S + +Y S R++ VE
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEPDVVT--YSSL--MYGYSLRMEIVE 358
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 11/250 (4%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
+++DIF++ ++ F++++LI L K+A +L + N +
Sbjct: 253 EALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I GKV A VF +M G++PD ++SL+ ++V A LF+ M++
Sbjct: 313 DAICKEGKVSE---AQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMIT- 368
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ KP++ +Y+ I G+ +D + + I G + + Y +LIHG +
Sbjct: 369 KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLRE 428
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ M S G +P + +L+G C L + + + K + M L+
Sbjct: 429 AQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILID 488
Query: 293 CYCELGRVDE 302
C+ G + +
Sbjct: 489 AMCKFGNLKD 498
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 4/283 (1%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDK 99
N LI+ L +V +Q D + + +++ +I L A L ++++
Sbjct: 169 NTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEE 228
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
G + + Y LI K + V A+ +F+ M+A+ I PD +NSLI LC+
Sbjct: 229 --AGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG-LCNFRR 285
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
S ++S PN T++ + G V + G +V TY S
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSS 345
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L++G + + ++ M++ G P +++G C +++D K ++ G
Sbjct: 346 LMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ L+ C+LGR+ E ++ + + P++ +
Sbjct: 406 LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTY 448
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + + A +F M QG+ PD+ +N+LI G + A LF+ M
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ P+ TY + GF G + + + + ++ Y LI K +
Sbjct: 438 SNGNL-PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNL 496
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ + E+ G++P++ I ++ LC LD + + G G +E
Sbjct: 497 KDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F +M +G KPD+ +N LI + + A LF M+ + P++ Y+ I
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH-QGLTPDNVNYNTLI 417
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G LG + + + G ++ TY L+ G K R + M S +
Sbjct: 418 HGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLK 477
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I + +++ +C L + L G N + ++ C+ G +DE E
Sbjct: 478 PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEA 537
Query: 307 LETLTKCNQSPE 318
+ P+
Sbjct: 538 FRNMEGDGCPPD 549
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 75/201 (37%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ A+ F M + P F L+ A + G A+ + P+ T
Sbjct: 73 RNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYT 132
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
I FS L VD ++ I G + T+ +LI+G K F F+++
Sbjct: 133 LSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFE 192
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P++ ++ GLC + K + G + N L+ C+ V+
Sbjct: 193 ASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVN 252
Query: 302 ELEEQLETLTKCNQSPEVLLH 322
E + + SP++ +
Sbjct: 253 EALDIFSYMKAKRISPDIFTY 273
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 160/362 (44%), Gaps = 21/362 (5%)
Query: 62 VDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
+DI+A+ S LIT+ S+ + +++ +L++ +G L Y ++ + GK+
Sbjct: 218 IDIYAYTS-------LITAYASNGRYREAVMVFKKLEE--EGCRPTLITYNVILNVYGKM 268
Query: 122 QNVPFA--MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+P++ + SM++ G+ PD +N+LI +C A +FE M ++ + P+
Sbjct: 269 -GMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAG-FSPDK 326
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFY 237
TY+A + + + A+GF+ ++ TY SLI S ARD D
Sbjct: 327 VTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI--SAYARDGLLDEAMELK 384
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ GI P + +L G K D + + G + N L+K +
Sbjct: 385 SQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNR 444
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G E+ + E + C P+++ ++ ++ ++ + +V M + G
Sbjct: 445 GNFVEMMKVFEEIKICECVPDIVT--WNTLLAVFGQNGMDSEVSGVFKEMKRAGF-VPER 501
Query: 358 EDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+ +I +Y RC +D+ + ++ + +TY+ ++A R GL + + V+ E
Sbjct: 502 DTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAE 561
Query: 417 MK 418
MK
Sbjct: 562 MK 563
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 148/360 (41%), Gaps = 7/360 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
L ++ F S ++++LI++ + L+ ++ K KG + + Y L++
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK--KGIKPDVFTYTTLLSGF 406
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K +AM VF M G +P+ FN+LI G+ V + +FE + E P+
Sbjct: 407 EKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE-EIKICECVPD 465
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ ++ F G ++ + AGF T+ +LI + FD Y
Sbjct: 466 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYR 525
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+ G+ P + VL L ++ + L + G K NE L+ Y
Sbjct: 526 RMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGK 585
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
V+ + E + P+ +L ++ +Y+ SD L + E + + +QG S
Sbjct: 586 EVERMSALAEEIYSGIIEPQAVL--LKTLVLVYSKSDLLTETERAFLELREQGFS-PDIT 642
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ ++ Y R + + L+ IK S + TY+ L+ Y R K + ++ E+
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI 702
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 5/256 (1%)
Query: 48 LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSS-PKKAQLVLEWRLDKMLKGNES 106
+ +P S+I +DS+ ++++ LI+S + S ++A V E + G
Sbjct: 268 MGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFE---EMKAAGFSP 324
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
Y L+ + GK + AM V MEA G P +NSLI A G + A+ L
Sbjct: 325 DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELK 384
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
MV + KP+ TY +SGF G D K + AG N+ T+ +LI
Sbjct: 385 SQMV-KKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGN 443
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+F + + +EE+ +P I +L V K + G+ +
Sbjct: 444 RGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDT 503
Query: 287 AQKLVKCYCELGRVDE 302
L+ Y G D+
Sbjct: 504 FNTLISAYSRCGFFDQ 519
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 16/219 (7%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A +I++ GK FA + + G+ D + SLI A +G A+ +F+ +
Sbjct: 189 AVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFK-KLE 247
Query: 172 SEEYKPNSKTYDAFISGFSSLGN--------VDAMNKWYAANIAAGFSVNVQTYESLIHG 223
E +P TY+ ++ + +G VD+M ++G + ++ TY +LI
Sbjct: 248 EEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMK-------SSGVAPDLYTYNTLISS 300
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ ++ +EEM + G P +L+ R+ LK + G+ +
Sbjct: 301 CRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPS 360
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ Y G +DE E + K P+V +
Sbjct: 361 IVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTY 399
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/186 (17%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F + QG PD N+++ + +V+ + + + P+ TY++ + +S
Sbjct: 629 FLELREQGFSPDITTLNAMV-SIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ + IA G ++ ++ ++I + R + EM G+ P +
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVI 747
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ + +K+++ K N+N L+ +C+L R DE + L
Sbjct: 748 TYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNL 807
Query: 311 TKCNQS 316
+ S
Sbjct: 808 RNLDPS 813
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L++ K + A+ + M G++ D+ +N+L+ C +G A+ ++E +V
Sbjct: 237 YSTLMSGLVKHDQLDNALDLLDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLV 296
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + G LG + ++ +A + TY LIHG ++ D
Sbjct: 297 RDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMVANNHQPDTVTYGILIHGLCRSGDV 356
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
DS R Y +M+ G++ + + +++G C K+ R KF
Sbjct: 357 DSAARVYSDMVKAGLVLDVAVYNSLIKGFC---KVGRTGEAWKF 397
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 22/215 (10%)
Query: 130 VFTSMEAQGIKPDSAV--FNSLICACLCSGDVVTALSLFEIMVSSEEYK----------- 176
V S ++ + PD+A+ F L C+ + + +L + V + Y
Sbjct: 129 VVLSAFSRALMPDAALAAFRDLPSLLGCNPGIRSHNALLDAFVRARRYSEADAFFASLSH 188
Query: 177 --------PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
PN +TY+ + + G+VD +++ G + + TY +L+ G +K
Sbjct: 189 GACGRRLAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLVKHD 248
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR-VKSFLKFLLGGGWKINENMA 287
D+ +EM G+ +L G ++ +K + + + G N
Sbjct: 249 QLDNALDLLDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATY 308
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ ++ C+LGR E E + N P+ + +
Sbjct: 309 KVMLDGLCKLGRFKEAGEVWSRMVANNHQPDTVTY 343
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + GK+ + V T M+ +G++P +N+LI AC G A+++++ M+
Sbjct: 283 YNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRML 342
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E Y PN+ TY+A IS + G +D + + + + G +V TY SLI KA +
Sbjct: 343 D-EGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQW 401
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ + EM G IP+ ++ + ++ + + GG
Sbjct: 402 ELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGG 450
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
P++A V + LD+ N + Y LI+ GK + M VF M +G +
Sbjct: 329 GQPREAMAVYKRMLDEGYSPNAT---TYNALISAYGKAGQLDKVMEVFQEMVHKGCERSV 385
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
++SLI AC +G AL LF M + E PN+ TY++ I+ + + ++ +
Sbjct: 386 ITYSSLISACEKAGQWELALELFNEM-AGEGCIPNTVTYNSLITACAQGAQWEKASEVFE 444
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
G + +V T+ +LI K + YE+M
Sbjct: 445 QMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQM 481
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQL--VLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
++ + +++ALI S+ K QL V+E + + KG E + Y+ LI+ K
Sbjct: 345 GYSPNATTYNALI----SAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQ 400
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
A+ +F M +G P++ +NSLI AC A +FE M P+ T+
Sbjct: 401 WELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQM-QKGGCTPDVVTFT 459
Query: 184 AFISGFSSLGN 194
A IS + G
Sbjct: 460 ALISSYEKGGQ 470
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 133/296 (44%), Gaps = 17/296 (5%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
A +GK++ A+++ M+ QG+ P + N ++ + G V A ++F + +
Sbjct: 165 AENGKLKE---AVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMF-VEMCQRGV 220
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ ++ + ++G V +W A + GF V+ T +I + + V
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
++ +M+ +G+ P++ ++ GLC + + + L+ ++ GWK N L+ C
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340
Query: 296 ELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL-- 352
+ G ++ L + + P V H ++ +I Y D+L+ E + RM +QGL
Sbjct: 341 KKGWTEKAFRLFLKLVRSDGYKPNV--HTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 353 ---SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ + D + ++ R AY+ +DL K + TY+ ++ G + G
Sbjct: 399 NTNTYTTLIDGHCKVGNFVR--AYELMDLM---GKEGFSPNIYTYNAIIDGLCKKG 449
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 3/251 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + Y +I K + A + + M+ QG+ P++ + +LI G+ V A
Sbjct: 360 GYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRA 419
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L ++M E + PN TY+A I G G++D + G + TY L+
Sbjct: 420 YELMDLM-GKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMS 478
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+ D + F+ +M+ +G P I ++ C ++++ + + + G
Sbjct: 479 VHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIP 538
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ ++ YC G + + ++ +P+ + + +I +LDD
Sbjct: 539 TKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT--YGALISGLCKESKLDDARN 596
Query: 343 SVGRMGKQGLS 353
M +GLS
Sbjct: 597 LYDAMMDKGLS 607
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 42/279 (15%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKM-LKGNESCLDEYACLIALSGKVQN 123
F+ + ++++A+I L KK L +RL +K+ + G ++ Y L+++ + +
Sbjct: 430 GFSPNIYTYNAIIDGL----CKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQAD 485
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
++ F M G PD + +LI + + LFE VS P KTY
Sbjct: 486 TNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLG-LIPTKKTYT 544
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I G+ GN K + G + + TY +LI G K D Y+ MM
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDK 604
Query: 244 GIIP--------------------SIPILEK------------VLEGLCARRKLDRVKSF 271
G+ P +I +L++ ++ LC+ KLD F
Sbjct: 605 GLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALF 664
Query: 272 LKFLLGGGWKINE-NMAQKLVKCY--CELGRVDELEEQL 307
LL +N + + KCY + G V EL E++
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERI 703
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + + +G++PD +N+LI G++ AL L I++ + PN+ Y++
Sbjct: 594 MALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLK-DGLAPNTVVYNSL 652
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G+ +L + ++K+Y + I G + TY +LI G K + Y EMM+ G
Sbjct: 653 ITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGY 712
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLK 273
IP + GLC +D K L+
Sbjct: 713 IPDAFTFTALTHGLCRSGDIDGAKKLLE 740
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M G+ PD +N+LI + + AL+LF+ M KP+ TY++ +
Sbjct: 386 AVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRM-KKAGVKPSINTYNSLL 443
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D K Y+ GF NV TY +L+ G + +DFD+ +EM G+
Sbjct: 444 MGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVS 503
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ ++ G+C ++ V LK + G+
Sbjct: 504 CNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGF 537
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
+ + L+ D +G + + Y LI + N+ A+ + + G+ P++ V+NS
Sbjct: 592 SDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNS 651
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
LI + +E M+ ++ TY I GFS GNV + Y+ +A
Sbjct: 652 LITGYKNLNMMKEVSKFYESMIKG-GIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAK 710
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
G+ + T+ +L HG ++ D D + EEM L + P++ I ++ G
Sbjct: 711 GYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLING 760
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 1/186 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ G+ + +N LI +C D V + SE + P TY++ I
Sbjct: 490 AYALLDEMKQNGVSCNDYTYNVLING-ICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSII 548
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G + + Y G N+ TY S I G + D + ++ G+
Sbjct: 549 NGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQ 608
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I ++ G C + L LL G N + L+ Y L + E+ +
Sbjct: 609 PDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKF 668
Query: 307 LETLTK 312
E++ K
Sbjct: 669 YESMIK 674
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ SM GI D++ + +LI G+V AL L+ M++ + Y P++ T+ A G
Sbjct: 669 YESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMA-KGYIPDAFTFTALTHGLC 727
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G++D K NV Y LI+G L+ R ++EM+++GI P
Sbjct: 728 RSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQP 784
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 120/302 (39%), Gaps = 16/302 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M +G + D+ +F++L+ ACL G A+ LF+ M + E P+ + Y I
Sbjct: 176 ALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGA-EIDPDQRVYALAI 234
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ LG+ + GF TY +++ +K + R +EM G
Sbjct: 235 TALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKK 294
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ + ++ G C R+++ + K L G + M L++ ++G + E
Sbjct: 295 MDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYEL 354
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSD-RLDDVEYSVGRMGKQGLS--FKSAEDVEMV 363
+T P F ++ L+D R D M GL F +
Sbjct: 355 CRQMTGQGLLPST---FELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFTYNNLI--- 408
Query: 364 ICSYFRCAAY---DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
++ C A+ + L+LF K K TY+ L+ GY + G + + +EM
Sbjct: 409 ---HWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPME 465
Query: 421 EY 422
+
Sbjct: 466 GF 467
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 107/289 (37%), Gaps = 41/289 (14%)
Query: 97 LDKMLKGNESCLD-EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M + SC D Y LI V V + S ++G P +NS+I +
Sbjct: 494 LDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVK 553
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW-------------- 201
+G + +A ++++ M + PN TY +FI G+ G D K
Sbjct: 554 AGMMGSAFTVYQQM-REKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIV 612
Query: 202 -YAANIAA--------------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
Y A I G + N Y SLI G V +FYE M
Sbjct: 613 AYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESM 672
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ GI+ +++G + ++ G+ + L C G +
Sbjct: 673 IKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDI 732
Query: 301 DELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD--RLDDVEYSVG 345
D ++ LE + + + P V ++ +G +R L + RL D ++G
Sbjct: 733 DGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMG 781
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 2/200 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V A + M QG+ P + + ++ L A+ LFE M
Sbjct: 335 YGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMA 394
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ TY+ I + + AG ++ TY SL+ G K
Sbjct: 395 DSG--LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCM 452
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + Y EM G P++ ++ G A++ D + L + G N+ L
Sbjct: 453 DEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVL 512
Query: 291 VKCYCELGRVDELEEQLETL 310
+ C + RV E++ L++
Sbjct: 513 INGICMVDRVCEVDGMLKSF 532
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV FA+ +++ M A+G PD+ F +L SGD+ A L E M
Sbjct: 684 YTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEM- 742
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ +PN Y+ I+G+ + + + + G + TY+ L+
Sbjct: 743 RRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/318 (19%), Positives = 118/318 (37%), Gaps = 8/318 (2%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G ++C Y ++ + K + A+ V M G K D V +L+ +V A
Sbjct: 257 GFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNA 316
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+LF+ + + P Y I G +G + G + ++
Sbjct: 317 LNLFKETLK-DGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLK 375
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G L R + +EEM G+ P + ++ C KL + + G K
Sbjct: 376 GLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKP 434
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ N L+ YC+ G +DE + + P V+ + ++R Y D+
Sbjct: 435 SINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYIT--LMRGYIAKKDFDNAYA 492
Query: 343 SVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+ M + G+S ++ IC R D + + + TY+ ++ G
Sbjct: 493 LLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVD--GMLKSFMSEGFIPTMMTYNSIING 550
Query: 401 YRRAGLSGKLDSVINEMK 418
+ +AG+ G +V +M+
Sbjct: 551 FVKAGMMGSAFTVYQQMR 568
>gi|125537837|gb|EAY84232.1| hypothetical protein OsI_05614 [Oryza sativa Indica Group]
Length = 367
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 1/169 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+K D+ V+N+L+ A + D L + M + +P+ TY+ + G + G V
Sbjct: 168 HGVKADAPVYNALMKAHCAASDPAGVLGVLRRM-KDDGVEPDLVTYNTLVFGLARAGMVT 226
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A AAG +V TY SL++G D EEM + G P+ +L
Sbjct: 227 KARTYLDAMAAAGHFPDVITYTSLMNGMCVKGDAMGALALLEEMEAKGCEPNERTYNTLL 286
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
GLC +KLD+ K ++G K+ V+ C GRV + E
Sbjct: 287 MGLCKNKKLDKAVDVYKSMVGAAMKLEAPAYATFVRALCRAGRVPDAYE 335
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E L Y L+ + V A +M A G PD + SL+ GD + A
Sbjct: 204 GVEPDLVTYNTLVFGLARAGMVTKARTYLDAMAAAGHFPDVITYTSLMNGMCVKGDAMGA 263
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+L E M ++ +PN +TY+ + G +D Y + + A + Y + +
Sbjct: 264 LALLEEM-EAKGCEPNERTYNTLLMGLCKNKKLDKAVDVYKSMVGAAMKLEAPAYATFVR 322
Query: 223 GSLKA 227
+A
Sbjct: 323 ALCRA 327
>gi|242054647|ref|XP_002456469.1| hypothetical protein SORBIDRAFT_03g036880 [Sorghum bicolor]
gi|241928444|gb|EES01589.1| hypothetical protein SORBIDRAFT_03g036880 [Sorghum bicolor]
Length = 392
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 6/188 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
I L G+ +P A+ F S P + N+LI AC+ SG+ A +F+ +
Sbjct: 113 IVLFGQANLLPDAISTFQS------SPSTRSLNALIFACIVSGNHTEAARVFQTFPDAHG 166
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN++T++A I F+ G + + + G N T+ + + G K FD V
Sbjct: 167 VKPNTETFNAIIKSFAESGTIRSFYSVFDEMCKKGLKPNATTFTTALAGFYKEERFDDVG 226
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ E M G S+P+ ++ LC + ++ + ++ G K + L+ +
Sbjct: 227 KVLELMKKNGCGESLPVYNVRVQSLCKLGRSGEARALVDEMVKKGTKPSWVTYNHLIYGF 286
Query: 295 CELGRVDE 302
C+ G ++E
Sbjct: 287 CKEGDLEE 294
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 42/236 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+AC+++ N A VF + +A G+KP++ FN++I + SG + + S+F+ M
Sbjct: 143 FACIVS-----GNHTEAARVFQTFPDAHGVKPNTETFNAIIKSFAESGTIRSFYSVFDEM 197
Query: 170 VSSEEYKPNSKTYDAFISGF------SSLGNV-DAMNKWYAANIAAGFSVNVQ------- 215
+ KPN+ T+ ++GF +G V + M K ++V VQ
Sbjct: 198 CK-KGLKPNATTFTTALAGFYKEERFDDVGKVLELMKKNGCGESLPVYNVRVQSLCKLGR 256
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
TY LI+G K D + R Y+EM G++ I
Sbjct: 257 SGEARALVDEMVKKGTKPSWVTYNHLIYGFCKEGDLEEAKRLYKEMGRKGLVGDINFYFM 316
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC D + W + + LV R+DE + +E +
Sbjct: 317 LIHYLCKGDDFDTALGVYNEIAAKNWVPCFSTMKMLVNGLAGSSRIDEAKGIIEKM 372
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 41/251 (16%)
Query: 60 DSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIAL 117
D++ F + S S +ALI + + S + +A V + D +K N + A
Sbjct: 124 DAISTFQSSPSTRSLNALIFACIVSGNHTEAARVFQTFPDAHGVKPNTETFNAIIKSFAE 183
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA------------------------- 152
SG +++ VF M +G+KP++ F + +
Sbjct: 184 SGTIRSF---YSVFDEMCKKGLKPNATTFTTALAGFYKEERFDDVGKVLELMKKNGCGES 240
Query: 153 ---------CLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
LC G A +L + MV + KP+ TY+ I GF G+++ + Y
Sbjct: 241 LPVYNVRVQSLCKLGRSGEARALVDEMVK-KGTKPSWVTYNHLIYGFCKEGDLEEAKRLY 299
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
G ++ Y LIH K DFD+ Y E+ + +P ++ ++ GL
Sbjct: 300 KEMGRKGLVGDINFYFMLIHYLCKGDDFDTALGVYNEIAAKNWVPCFSTMKMLVNGLAGS 359
Query: 263 RKLDRVKSFLK 273
++D K ++
Sbjct: 360 SRIDEAKGIIE 370
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 128/311 (41%), Gaps = 46/311 (14%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
L S Q+ + KA +LE +DK + YA ++ + + A V+ M +
Sbjct: 297 LKVSPQAGNMAKALDILE-EMDKHGVSPNKMI--YAMIMDGYARGGDFTAAFKVWEDMVS 353
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+KPD ++N L+ A +G + AL + E + + P +TY + + G+ GN+
Sbjct: 354 AGLKPDIVIYNILVHAFCKAGRMDKALGVLE-NIEANRLLPTIETYTSILDGYVKGGNIQ 412
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + AG V +Y SL+ G KAR ++ EM++ G++PS I +
Sbjct: 413 KALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALT 472
Query: 257 EGLCARRKLDRVKSFLKF-------------------------------------LLGGG 279
EG R D K+F F + G
Sbjct: 473 EGYA--RTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAG 530
Query: 280 WKINE-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
K N+ L Y GRV+E EE + + + P+ L+ ++ +I Y +S R +
Sbjct: 531 LKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLI--YNSLINAYGVSGRHE 588
Query: 339 DVEYSVGRMGK 349
D+E + +M K
Sbjct: 589 DMEALLAKMVK 599
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
++ L EY L+ + + A F +M A IKP+ ++ SLI A + D+ A+
Sbjct: 127 DKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAV 186
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY----AANIAAGFSVNVQTYES 219
+ E M+S + + N + + ISG++S GN +A W+ A N+ G V Y S
Sbjct: 187 ACTEEMLS-QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV----YNS 241
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++ +A + ++V+ +M G ++ + VL G R ++ SF L
Sbjct: 242 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRL 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 20/219 (9%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +++ A+ M +QGI+ + AVF S+I +G+ A FE
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFE-KF 227
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E P Y++ + + GN++ + A GF N+ Y ++++G + RD
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287
Query: 231 DSVDRFY-------------------EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
+ F+ EEM G+ P+ I +++G
Sbjct: 288 EKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKV 347
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ ++ G K + + LV +C+ GR+D+ LE +
Sbjct: 348 WEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENI 386
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
KP + Y + ++ G+ A + A A+ NV Y SLIH +ARD +
Sbjct: 128 KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 187
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKF----LLGGGWKINENMAQKL 290
EEM+S GI + + ++ G + + + F KF L+ GG N +
Sbjct: 188 CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYN-----SI 242
Query: 291 VKCYCELGRVDELEEQLETLTK 312
V+ YC+ G ++ +E L + +
Sbjct: 243 VQAYCQAGNMETVEALLAQMEE 264
>gi|294462101|gb|ADE76603.1| unknown [Picea sitchensis]
Length = 290
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 21/240 (8%)
Query: 61 SVDIFAFNSSQF-----SWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACL 114
++D+F F +F S++A++ + + Q L++ LDK+ + N Y L
Sbjct: 39 ALDVFHFIPEKFERTVMSYNAVMDGFCKAG--QLQEALQY-LDKLPENNLGPNATSYTIL 95
Query: 115 IA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
I+ GK+Q A +F SM +G PD+ V+N+L+ A G A L E MV+
Sbjct: 96 ISGYITQGKLQE---AEKLFRSMAEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVT 152
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
E +P+S TY I+ F+ G ++ K +A I AG +V Y K FD
Sbjct: 153 -EHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFD 211
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ ++ M+ G P + + + EG + + K + +L G N++++LV
Sbjct: 212 EAQKLFQRMVDGGQNPDVGTYDILTEGFGQEGRAEEAKKLFRDILEKG-----NLSEELV 266
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 1/174 (0%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+++ +G + AL + + + PN+ +Y ISG+ + G + K + +
Sbjct: 57 YNAVMDGFCKAGQLQEALQYLDKLPENN-LGPNATSYTILISGYITQGKLQEAEKLFRSM 115
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
G + Y +L+ K F ++ EEM++ P ++ + K+
Sbjct: 116 AEKGCIPDACVYNTLLDAYFKEGMFAEAEKLLEEMVTEHREPDSVTYTMLINEFTKQGKM 175
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ ++ G K + + K C+ + DE ++ + + Q+P+V
Sbjct: 176 EGALKIFANMIEAGLKPDVTVYNKWFGLLCKESKFDEAQKLFQRMVDGGQNPDV 229
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 138/349 (39%), Gaps = 52/349 (14%)
Query: 98 DKMLKGNESCLDE------------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
D ML G S L+E Y LI GK+ +F M I PD
Sbjct: 226 DGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCT 285
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
FNS+I G V A + M+ + +PN TY+ + G+ G + + + +
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMTYMIE-KGVEPNEITYNVVMDGYCLRGQMGRARRIFDSM 344
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL------ 259
I G ++ +Y +LI+G ++ + D + + E+ G+ PSI +L GL
Sbjct: 345 IDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRT 404
Query: 260 -CARRKLDRVKSFLKF--------LLGGGWK---INENMAQ-----------------KL 290
CA+ D +++ LLGG +K + E M+ +
Sbjct: 405 ECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAV 464
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G++D+ E L P+V+ ++ +I Y LD+ + + +M
Sbjct: 465 INGLCKNGKLDKAHATFEKLPLIGLHPDVIT--YTAMISGYCQEGLLDEAKDMLRKMEDN 522
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLV 398
G +++ +FR + + FL I G S+ AT + L+
Sbjct: 523 G-CLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLM 570
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 123/286 (43%), Gaps = 14/286 (4%)
Query: 127 AMHVFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+H+F + + I +PD ++ +++ G A L +M KP++ Y+
Sbjct: 161 AVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGIT-KPDTCIYNIV 219
Query: 186 ISGFSSLGNVDA----MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
I F G +D +N+ NI ++ TY SLI G K ++ V + EM+
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKNIPP----DIITYTSLIDGLGKLSQWEKVRTLFLEMI 275
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
L I P + V++GLC K++ + + +++ G + NE ++ YC G++
Sbjct: 276 HLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMG 335
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+++ P+++ ++ +I Y ++D + + GL S
Sbjct: 336 RARRIFDSMIDKGIEPDIIS--YTALINGYVEKKKMDKAMQLFREISQNGLK-PSIVTCS 392
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGL 406
+++ F + +F D ++ + + T+ L+ GY + GL
Sbjct: 393 VLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGL 438
>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 567
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 16/260 (6%)
Query: 74 WDALITSLQ--SSSPKKAQLVLEWRLDKMLKGNESCLDE-----------YACLIALSGK 120
WD L++ + S SP ++L+ +K + C+ + +C LS
Sbjct: 172 WDELVSVYREFSFSPTVFDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNL 231
Query: 121 VQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
VQN A+ V+ M A GI PD + ++ A G V A + + M S +PN
Sbjct: 232 VQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSC-CEPN 290
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY++ I G+ SLG+V K A G N +TY LI G K + ++ +
Sbjct: 291 VVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFG 350
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
MM + + ++ C ++D +L G K+N + L+ YC+LG
Sbjct: 351 CMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLG 410
Query: 299 RVDELEEQLETLTKCNQSPE 318
V++ E L ++ N P+
Sbjct: 411 HVNKAAEVLVSMKDWNLKPD 430
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ +V A V SM+ +KPDS +N+L+ D + A L + M ++
Sbjct: 408 KLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEM-HNKGVNFTV 466
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ + +G+V+ A++ W + G + N TY +L+ K FD ++
Sbjct: 467 VTYNTLLKNLFHVGHVEHALHIWNLMH-KRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWK 525
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLK 273
+ +S G SI + ++ G C KL + + FLK
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLK 561
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 5/197 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A+ + +M G+K ++ + NSLI G V A E++V
Sbjct: 364 YGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAA---EVLV 420
Query: 171 SSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
S +++ KP+S Y+ + GF + K G + V TY +L+
Sbjct: 421 SMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVG 480
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + M G+ P+ +L+ DR K L G+ + +
Sbjct: 481 HVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYN 540
Query: 289 KLVKCYCELGRVDELEE 305
++ +C++ ++ + +E
Sbjct: 541 TMICGFCKMEKLVQAQE 557
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+W L G + LD + K ++ A + M +G+ +N+L+
Sbjct: 424 DWNLKPDSYGYNTLLDGFC-------KQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNL 476
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSV 212
G V AL ++ +M PN TY + F +G D AM W A ++ GF+
Sbjct: 477 FHVGHVEHALHIWNLM-HKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDA-LSKGFTK 534
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
++ Y ++I G K + +M L
Sbjct: 535 SITLYNTMICGFCKMEKLVQAQEIFLKMKEL 565
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 119/296 (40%), Gaps = 3/296 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N A+ + M G PD+ +N+++ A LC +T + + + + PN TY
Sbjct: 226 NTEEALRLINQMGEYGCCPDNVTYNTVLTA-LCKRSQLTQVRDLLLQMKNSGLFPNRNTY 284
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + G+ L + + G +V TY +++ G D R ++M S
Sbjct: 285 NILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMES 344
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++P + +++G R D ++ + G K N ++K +C G++DE
Sbjct: 345 FKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDE 404
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ + + SP+ ++ +I Y + ++ + + MG++GL + +
Sbjct: 405 ASNVMVKMVESGFSPDCFT--YNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTL 462
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ D L + K Y L TY L+ GY + + + + EMK
Sbjct: 463 LHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMK 518
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 135/333 (40%), Gaps = 46/333 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+A+G+K + N +I G + A ++ MV S + P+ TY+ I
Sbjct: 370 AFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESG-FSPDCFTYNTMI 428
Query: 187 SGFSSLGNV-------DAMNK-------------------------WYAANIAA---GFS 211
+G+ G + D M + Y + A G+
Sbjct: 429 NGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYI 488
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++ TY +LI G K D + +EEM GI+ +I ++ GLC K D+
Sbjct: 489 LDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDK 548
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L LL G +E+ + ++ YC G V++ + + + + P++ F+ I L
Sbjct: 549 LNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDI----FTCNILLR 604
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDV--EMVICSYFRCAAY-DRLDLFLDHIKGSYK 388
L R +E + K + V ++I S+ + D DL + + +
Sbjct: 605 GLC-REGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLE 663
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
R TY+ +V G +AG + + + + +KFAE
Sbjct: 664 PDRYTYNAIVTGLTKAGRTEEAEKL--ALKFAE 694
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G NV T+ LIHG + + R +M G P VL LC R +L
Sbjct: 203 VKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQL 262
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+V+ L + G N N LV YC+L + E E +E +T P+V ++
Sbjct: 263 TQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWT--YN 320
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
++R ++D+ R+ + SFK DV
Sbjct: 321 TMVRGLCDEGKIDEAV----RLRDKMESFKLVPDV 351
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 5/217 (2%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M KG ES Y +IAL V A+ V M G+ D+ VF ++I
Sbjct: 310 LDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCS 369
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GD+ A LFE M + T+ A I+G G + ++ + G V+V
Sbjct: 370 KGDLAAARRLFEEM-QKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVV 428
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LI G K + R + EM+ + P++ + +GLC + + L +
Sbjct: 429 TYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEM 488
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
G ++N L+ C+ G LE+ + +T+
Sbjct: 489 CNKGLELNVYTYNSLINGLCKFG---NLEQAMRIMTE 522
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 3/208 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G+ D + LI G++V A + MV PN TY A G
Sbjct: 414 VLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVG-RRVAPNVVTYTALSDGL 472
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+V A N+ G +NV TY SLI+G K + + R EM + G +
Sbjct: 473 CKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDV 532
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++ LC + DR + L+ +L G K + L+ +C GRV+ ++ LE
Sbjct: 533 YTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEW 592
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRL 337
+ + N P V+ ++ +++ Y + +
Sbjct: 593 MLEKNVRPNVVT--YNSLMKQYCIDKNM 618
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K N+ AM + T MEA G + D + +LI SG+
Sbjct: 491 KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDR 550
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A ++ + M+ + KP+ TY+ ++GF G V+ K + NV TY SL+
Sbjct: 551 AHNMLQEMLD-KGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLM 609
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
++ S Y+ M S + P+ +++G C R + F + ++ G +
Sbjct: 610 KQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLR 669
Query: 282 INENMAQKLVK 292
+ + L++
Sbjct: 670 LTASSYSALIR 680
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ LI +L +S +A +L+ LDK +K + + + +SG+V+ +
Sbjct: 533 YTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEG---GKKL 589
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M + ++P+ +NSL+ ++ + +++ M S+E PN TY+ I G
Sbjct: 590 LEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGM-HSQEVAPNENTYNILIKGHC 648
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
N+ ++ I G + +Y +LI K + F F+++M + G+
Sbjct: 649 KARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGL 703
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 29/249 (11%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
AF+S S+D L+ L S A+L+ R + ESC + + +P
Sbjct: 195 AFSSDPASFDLLLLCLPS-----AELLRRLRQYGLSPSPESC----------NAVLSRLP 239
Query: 126 F--AMHVFTSMEAQGIKPDSAV--FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
A+ +F + PD V N L+ A L +G + A F+ M S P+ T
Sbjct: 240 LDEAIALFREL------PDKNVCSHNILLKALLSAGRLKDACQHFDEMSSP----PDVVT 289
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y + G+ G ++ K A G N Y S+I R E+M
Sbjct: 290 YGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMT 349
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G+ + V+ G C++ L + + + G + L+ C G +
Sbjct: 350 MHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELK 409
Query: 302 ELEEQLETL 310
E + L+ +
Sbjct: 410 EADRVLQEM 418
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 119/325 (36%), Gaps = 50/325 (15%)
Query: 69 SSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
+ + + ALI L ++ K+A VL+ +DK L + + Y LI K N+ A
Sbjct: 390 ADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVD---VVTYTVLIDGYCKRGNMVEA 446
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
V M + + P+ + +L GDV A L M + + + N TY++ I+
Sbjct: 447 FRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCN-KGLELNVYTYNSLIN 505
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNV--------------------------------- 214
G GN++ + AAG +V
Sbjct: 506 GLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKP 565
Query: 215 --QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
TY L++G + + + E M+ + P++ +++ C + +
Sbjct: 566 SIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIY 625
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDEL----EEQLETLTKCNQSPEVLLHFFSGII 328
K + NEN L+K +C+ + E +E +E + S +S +I
Sbjct: 626 KGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASS------YSALI 679
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLS 353
RL + + +M +GL+
Sbjct: 680 RLLNKKKKFSEARVFFDKMRNEGLT 704
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 5/309 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LIA K A+ F M+ G KPD +NS++ + + AL+++ M+
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y PN T+ ++G G D K + G N Y ++ G +A+
Sbjct: 194 KLN-YNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D V R M G P +L+G C ++D + L+ G+ + L
Sbjct: 253 DDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSL 312
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ R DE++E + K P+V+L ++ +IR + +D + M ++
Sbjct: 313 IDGLFRAKRYDEVQEWCRKMFKAGIEPDVVL--YTILIRGFCEVGMVDYALNMLNDMTQR 370
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
GLS +I + D+ L L+ K TY L+ G R GL +
Sbjct: 371 GLS-PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDE 429
Query: 410 LDSVINEMK 418
+ N+M+
Sbjct: 430 ARQIFNQME 438
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 87 KKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
K+ V EW KM K G E + Y LI +V V +A+++ M +G+ PD+
Sbjct: 320 KRYDEVQEW-CRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYC 378
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+LI C ++ ++ +S + P S TY I G G +D + +
Sbjct: 379 YNALIKG-FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM 437
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G S ++ T+ +LI G KA + + + + M +G PS+
Sbjct: 438 ENLGCSPSIMTFNALIDGLCKAGELEEARHLFYK-MEIGKNPSL 480
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GI+PD ++ LI G V AL++ M + P++ Y+A I GF +G
Sbjct: 332 MFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM-TQRGLSPDTYCYNALIKGFCDVG 390
Query: 194 NVDAMNKWYAANIAAGFSVN-----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+D A ++ S N TY LI G + D + + +M +LG PS
Sbjct: 391 LLDK-----ARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445
Query: 249 IPILEKVLEGLCARRKLDRVKS-FLKFLLG 277
I +++GLC +L+ + F K +G
Sbjct: 446 IMTFNALIDGLCKAGELEEARHLFYKMEIG 475
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AMH+F +M G +PDS + +LI +V A L + M ++ P+ TY + I
Sbjct: 204 AMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEM-ETKGCSPSVVTYTSII 262
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G L NVD + NV TY SL+ G K E M+ +
Sbjct: 263 HGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLR 322
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +L GLC K++ + G+K + + K+V C C++ R E
Sbjct: 323 PNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANF 382
Query: 307 LETLTKCNQSP 317
L+ + C P
Sbjct: 383 LDEMVLCGIKP 393
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 2/196 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y ++A+ + + A + M GI P N LI A C SG + A+ LF M
Sbjct: 152 YISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTM 211
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S+ +P+S TY I+G ++ + G S +V TY S+IHG + +
Sbjct: 212 -SNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNN 270
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R E+M I P++ +++G C R + L+ ++ + N
Sbjct: 271 VDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYST 330
Query: 290 LVKCYCELGRVDELEE 305
L+ C G+++E E
Sbjct: 331 LLNGLCNEGKINEALE 346
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F++ +L+ ++ +A+ +LE + K L+ N + Y+ L+ + A+ +
Sbjct: 291 FTYSSLMDGFCKTGHSSRARDILELMIQKRLRPN---MISYSTLLNGLCNEGKINEALEI 347
Query: 131 FTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALSLFEIMVSSEEYKPNSKTYD 183
F M+ QG KPD+ ++ ++ CLC + + + + L I + + + +T++
Sbjct: 348 FDRMKLQGFKPDAGLYGKIV-NCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHN 406
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G ++ N + + Y + + G S+ V T+ SL+ +D R +EM+
Sbjct: 407 RVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVIN 466
Query: 244 GIIPSIPILEKVLEGLCARRK 264
G IP + ++ C RK
Sbjct: 467 GCIPQGEMWSTMVNCFCDERK 487
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 8/295 (2%)
Query: 32 TNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQ 90
T + S+SS N L+S L ++ SQ+ + + + + +S + + + L+ L + + +
Sbjct: 64 TPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREG 123
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
+ + +G + Y LI + A +F M+ G PD + +LI
Sbjct: 124 FAAFAGI--LRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLI 181
Query: 151 CACLCSGDVVTALSLFEIM---VSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+G++ AL L + M +S E KPN TY+ + G +G D + +
Sbjct: 182 KGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM 241
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
G ++ +Y SLIHG A ++ R +EM+ G+ P + +++ LC K+
Sbjct: 242 KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKV 301
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
K L ++ G + L++ +C +G ++ E ++ P+V+
Sbjct: 302 IEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVI 356
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V ++ A +F SM ++G +PD +N LI + V A+ L+ M+
Sbjct: 323 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TYD+ + G G VD K ++ A G + N TY + G K
Sbjct: 383 LVGK-RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCL 441
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + E+ S I L +++GLC KL+ + L G + N +
Sbjct: 442 FEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIM 501
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C G+VD+ ++ + +P+++ ++ ++R + S++L++V + RM ++
Sbjct: 502 IHGFCREGQVDKANVLIQKMEANGCTPDIIT--YNTLMRGFYESNKLEEVVQLLHRMAQK 559
Query: 351 GLS 353
+S
Sbjct: 560 DVS 562
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 4/256 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+ML +G + + + LI K V A + M GI PD +NSLI
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GD+ +A LF + + S+ +P+ +Y+ I+G+S V+ K Y + G NV
Sbjct: 333 VGDLNSARELF-VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVI 391
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY+SL+ G A D + + M + GI + L+GLC L L
Sbjct: 392 TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL 451
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+K+ L+ C+ G+++ E E L+ P V+ ++ +I +
Sbjct: 452 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVT--YTIMIHGFCREG 509
Query: 336 RLDDVEYSVGRMGKQG 351
++D + +M G
Sbjct: 510 QVDKANVLIQKMEANG 525
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 1/219 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K V AM ++ M G +P+ ++SL+ +G V
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD 408
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF +M + NS TY F+ G + K + ++ F + ++ LI
Sbjct: 409 AKKLFSVM-KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI 467
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G KA ++ +E++ + G P++ ++ G C ++D+ ++ + G
Sbjct: 468 DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 527
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ L++ + E +++E+ + L + + + SP+ +
Sbjct: 528 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 566
>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
Length = 581
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 110/253 (43%), Gaps = 7/253 (2%)
Query: 60 DSVDIFAFNSSQFSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D +D +W++ I L + + AQL E + N + Y LI
Sbjct: 237 DRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVT----YTTLIDG 292
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ NV A+ + MEA G+ P A +N+++ G++ L M + +
Sbjct: 293 YCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEM-DGRKVQA 351
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ T + I+ + G++ + K + +G +N TY++LIHG KAR+ D +
Sbjct: 352 DHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAF 411
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G P+ + +++G C + D V + L+ G ++ + + L++ C
Sbjct: 412 FQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRK 471
Query: 298 GRVDELEEQLETL 310
G VD+ + + +
Sbjct: 472 GLVDQAQRVFDQM 484
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M+ +GI+PD+ +NS I G V A LF MV+++ P++ TY I
Sbjct: 232 AMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQA-TPDNVTYTTLI 290
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ GNV+ K AAG V TY +++ + + V R EM +
Sbjct: 291 DGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQ 350
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ C R + K ++ G ++N + L+ +C+ +D +E
Sbjct: 351 ADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEA 410
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ SP + FS ++ + + D V + K+GL
Sbjct: 411 FFQMVDAGFSPNYSV--FSWLVDGFCKKNNADAVLAIPDELMKRGL 454
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 124/318 (38%), Gaps = 46/318 (14%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHV 130
SW L+ + QS+ P A V + ++ D +AC L+ + + A V
Sbjct: 112 SWLVLVLA-QSARPHDAVRVFDH-----MRARGLAPDAHACTALLTALARARMTATARRV 165
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL------------------------- 165
F M G+ + V+N+++ CL +GD A ++
Sbjct: 166 FDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCR 225
Query: 166 ----FEIM-----VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+E M + E +P++ T+++ I G G V + + +AA + + T
Sbjct: 226 KGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVT 285
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI G +A + + + M + G++P + +L LC + V L +
Sbjct: 286 YTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMD 345
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSD 335
G + + L+ YC+ G ++ + K +S L HF + +I + +
Sbjct: 346 GRKVQADHVTCNTLINAYCKRG---DMTSACKVKKKMMESGLQLNHFTYKALIHGFCKAR 402
Query: 336 RLDDVEYSVGRMGKQGLS 353
LD + + +M G S
Sbjct: 403 ELDGAKEAFFQMVDAGFS 420
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 8/204 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G ++ V +H M+ + ++ D N+LI A GD+ +A + + M+ S + N
Sbjct: 332 GNMKEVHRLLH---EMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESG-LQLN 387
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY A I GF +D + + + AGFS N + L+ G K + D+V +
Sbjct: 388 HFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPD 447
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
E+M G+ P + ++ LC + +D+ + + G + + L Y G
Sbjct: 448 ELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKG 507
Query: 299 RVDELEEQLETLTKCNQ---SPEV 319
L+ +TK NQ +P++
Sbjct: 508 NPTAALNTLDGMTK-NQLYITPQI 530
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 10/288 (3%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F+ + S+ +I L +S KA + + +DK + + + Y LI GK + V
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPD---VVTYGALIDGLGKQRRVK 257
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F A+G P +N++I G + AL+L++ MV KP+ TY A
Sbjct: 258 EAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSAL 317
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G + + + Y + G S +V TY +L+ G K+ D + + M +G
Sbjct: 318 INGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRK-MGVGN 376
Query: 246 I--PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
+ P++ +++ C +L K + G + +++ C+ R+DE
Sbjct: 377 VCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEA 436
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
E E++ K + VL F+ ++ Y R+DD + RM G
Sbjct: 437 HELFESIGKTCKPDSVL---FNTMLAGYCKITRIDDAKKLHDRMLDSG 481
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 9/218 (4%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
P A V +W K ++ + + C L+++ K + V A F S +PD
Sbjct: 82 PNTAWEVFQW----AGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDE 137
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
+N+L+ +GDV AL+LF M S ++++ + G S G + +M
Sbjct: 138 VSYNTLMNGFFKAGDVKKALALFGEMKDSG--IAVLRSHNIVLRGLCSGGKI-SMAWEVF 194
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+++ FS N+ +Y +I G K+R D +++M+ I P + +++GL +R
Sbjct: 195 KDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQR 254
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
++ + G ++ C+ GR++
Sbjct: 255 RVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE 292
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV + A+ + ME + + PD+ F ++I + A LFE +
Sbjct: 385 YTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI- 443
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+S ++ ++G+ + +D K + + +G + + TY +L+ G + +
Sbjct: 444 -GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRY 502
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
Y EM+ +G P E+ L L R + D
Sbjct: 503 SDALIMYHEMIEMGFPP-----ERHLAELVDRTRTDH 534
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI K N+ A+ +F M +G KPD FNSLI + + ALSL+ M
Sbjct: 450 YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMF 509
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N+ TY+ + F ++ K + G ++ TY LI K
Sbjct: 510 L-EGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAV 568
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EEM+ GI P+I ++ GLC K++ FL+ ++ G + L
Sbjct: 569 EKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSL 628
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C++G V E L P+ + +
Sbjct: 629 INGLCKMGHVQEASNLFNKLQSEGIRPDAITY 660
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ +M G +PD+ FN +I + G +V+AL L MV+ + ++PN TY I+GF
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVA-KRFEPNVITYTILINGF 422
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ + + A G S+N Y LI K + + + + EM G P I
Sbjct: 423 CKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDI 482
Query: 250 PILEKVLEGLCARRKLDRVKSF 271
++ GLC K++ S
Sbjct: 483 YTFNSLINGLCKNHKMEEALSL 504
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 112/296 (37%), Gaps = 39/296 (13%)
Query: 50 VPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCL 108
+P + LD +++ + + S++ ++ L P+ A V D + +G +
Sbjct: 149 LPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVF---YDMLSRGVSPTV 205
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFE 167
+ ++ V V A + M G P+S ++ +LI A LC + V+ AL L E
Sbjct: 206 YTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHA-LCENNRVSEALQLLE 264
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M +P+ +T++ I G G + K + GFS + TY L+HG +
Sbjct: 265 DMFLMC-CEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRM 323
Query: 228 RDFDSV--------------------------------DRFYEEMMSLGIIPSIPILEKV 255
D D Y M+ G P +
Sbjct: 324 GQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIM 383
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++GL + L L ++ ++ N L+ +C+ GR++E E + +++
Sbjct: 384 IDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMS 439
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
FY+ M+S G+ P++ V++ LC ++D S L+ + G N + Q L+ C
Sbjct: 193 FYD-MLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALC 251
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
E RV E + LE + P+V F+ +I + R+ + + RM +G S
Sbjct: 252 ENNRVSEALQLLEDMFLMCCEPDV--QTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFS-T 308
Query: 356 SAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLDSVI 414
A ++ R D L+ I Y+ L++GY +G D +
Sbjct: 309 DALTYGYLMHGLCRMGQVDEARALLNKIPNP---NTVLYNTLISGYVASGRFEEAKDLLY 365
Query: 415 NEMKFAEY 422
N M A Y
Sbjct: 366 NNMVIAGY 373
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 17/252 (6%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S P T+ + + VD+ G N Y++LIH +
Sbjct: 198 SRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVS 257
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ E+M + P + V+ GLC ++ L +L G+ + L+
Sbjct: 258 EALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLM 317
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD---DVEYS---VG 345
C +G+VDE L N+ P ++ +I Y S R + D+ Y+ +
Sbjct: 318 HGLCRMGQVDEARALL------NKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+F D +V Y A L+L + + ++ TY L+ G+ + G
Sbjct: 372 GYEPDAYTFNIMID-GLVKKGYLVSA----LELLNEMVAKRFEPNVITYTILINGFCKQG 426
Query: 406 LSGKLDSVINEM 417
+ ++N M
Sbjct: 427 RLEEAAEIVNSM 438
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 66/163 (40%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P++ ++N+LI + SG A L + Y+P++ T++ I G G + +
Sbjct: 338 NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSAL 397
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +A F NV TY LI+G K + M + G+ + ++ L
Sbjct: 398 ELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICAL 457
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
C ++ + G G K + L+ C+ +++E
Sbjct: 458 CKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEE 500
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 75/328 (22%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE------------- 173
A+ + + G++PD+ +N+LI AC ++ A+++FE M++SE
Sbjct: 277 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 336
Query: 174 ---------------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
++P++ TY++ + F+ G+V+ + + + AGF
Sbjct: 337 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 396
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ TY ++IH K D Y+EM ++G P +++ L K+DR+
Sbjct: 397 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG---KMDRI---- 449
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
E G+V LE + P ++ FS +I YA
Sbjct: 450 ----------------------SEAGKV------LEEMADAGLKPTLVT--FSALICAYA 479
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR--LDLFLDHIKGSYKLR 390
S R DD E + RM + G+ K +V+ F + R + L+ IK YK
Sbjct: 480 KSGRQDDAERTFDRMVESGV--KPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD 537
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y L+A + +++ VI +M+
Sbjct: 538 DGLYQVLLAALAKGNEHDEIEGVIQDME 565
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 21/322 (6%)
Query: 92 VLEWRLDKMLKGN---ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
+ E+ +MLK + C D Y LI + + P A VF M+ GI P VF S
Sbjct: 659 IQEYSRKQMLKRGSFGQDC-DLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKVFPS 717
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA-NIA 207
I C G TA L + S+ A I + L W A N
Sbjct: 718 FIFQCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKL------KLWQQAENFV 771
Query: 208 AGF----SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G V+ + + +LIH ++ ++ ++ M+ G +P++ + ++ L
Sbjct: 772 KGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDG 831
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
+LD + ++ L KI+++ +++ + + G V E+ + + P +H
Sbjct: 832 RLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPN--MHL 889
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMVICSYFRCAAYDR-LDLFLD 381
+ +I L + R DVE V M +G FK V ++ Y +DR ++++
Sbjct: 890 YRIMISLLCHNKRFRDVELMVAEM--EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHS 947
Query: 382 HIKGSYKLRRATYDFLVAGYRR 403
++ + TY+ L+ Y R
Sbjct: 948 ILEAGLEPDEDTYNTLIVMYSR 969
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 52/299 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGD------VVTALSLFEIMVSSEEYKPNSK 180
A +F M +G P N ++ A + G VV L +I +S
Sbjct: 801 ARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISK-------S 853
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T + F+ G+V + K Y AAG+ N+ Y +I + F V+ EM
Sbjct: 854 TVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM 913
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G P + +L +L DR +L G + +E+ L+ Y
Sbjct: 914 EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR---- 969
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
N PE G LY MGK+GL+ K E
Sbjct: 970 -------------NFRPE------EGFTLLY--------------EMGKRGLTPK-LESY 995
Query: 361 EMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++++ + + +++ DL + ++ Y+L R+ Y ++ YR A K + +++ MK
Sbjct: 996 KILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMK 1054
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 1/177 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF-SSLG 193
+A G++P +A F +LI A +G A+ F M +P + Y+A + +S G
Sbjct: 131 QAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGG 190
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V Y +AAG N TY LIHG K + ++EM+S GI P++
Sbjct: 191 AVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHT 250
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L +C +L ++ L + G +E + C+ GRVDE E+LE L
Sbjct: 251 ILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEAL 307
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 19/229 (8%)
Query: 108 LDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
L Y+CLI L+G+ + F ++ +E + PD ++ +I C +G A +
Sbjct: 317 LKGYSCLIDGLFLAGRYEE-GFQCYM-EVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFA 374
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
F+ M + + P++ Y+ + G++D + + +++ TY ++I G
Sbjct: 375 FFDEM-KEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGL 433
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-------------F 271
K + D + ++ M+ +G PS+ +++GL +L+ + F
Sbjct: 434 CKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLF 493
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ LG + QKLV+ C+ G+V + + L + P+V+
Sbjct: 494 LRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVV 542
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
DS L+ + SG V+ A L ++ S P+ TY+ ++G + N+D +
Sbjct: 505 DSETLQKLVESMCQSGQVLKAYKLLRGIIDSG-VVPDVVTYNTLLNGLCKVRNLDGALRL 563
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ GF ++ TY +LI L+A ++ +++++ G PS+PI ++ LC
Sbjct: 564 FRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCR 623
Query: 262 RRKLDR 267
+KL +
Sbjct: 624 MQKLSQ 629
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS------------ 171
VP A+ ++ M A G P+ A +N LI G V AL LF+ M+S
Sbjct: 192 VPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTI 251
Query: 172 -------------------SEEYK---PNSKTYDAFISGFSSLGNVD-AMNKWYAANIAA 208
S E K P+ TY+AF+SG G VD A+ + A
Sbjct: 252 LLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTG 311
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDR 267
F + ++ Y LI G A ++ + Y E++ + P I + ++ G + +
Sbjct: 312 TFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTND 371
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+F + G+ + L+K C+ G +D + + + N
Sbjct: 372 AFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNN 418
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 3/212 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ SME +G PD +N+ + +G V A+ E + + + K Y I
Sbjct: 265 AENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLI 324
Query: 187 SGFSSLGNVDAMNKWYAANI-AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + + Y + A S ++ Y +I G +A + F++EM G
Sbjct: 325 DGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGF 384
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P +L+ LC LD +S + ++ ++ + ++ C+ VDE +
Sbjct: 385 TPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQ 444
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ + + P V+ + G+ R + L +
Sbjct: 445 VFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEE 476
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 8/255 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ + + N + ++++ L+ +L + K+A+ VL L +K + + Y+ L+
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD---VITYSTLMDG 313
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V V A HVF +M G+ PD + LI + V AL+LF+ M + P
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM-HQKNMVP 372
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + I G G + + G NV TY SLI G K D +
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALF 432
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M GI P+ +L+GLC +L + + LL G+ +N ++ +C+
Sbjct: 433 NKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQ 492
Query: 298 GRVDELEEQLETLTK 312
G LEE L L+K
Sbjct: 493 GL---LEEALTMLSK 504
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 7/204 (3%)
Query: 101 LKGNESCLDEYACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+KG + + Y+ LI + GK++ A+ + M + I P+ +N L+ A G
Sbjct: 227 VKGISADVVTYSTLIYGFCIEGKLKE---AIGLLNEMVLKTINPNVYTYNILVDALCKEG 283
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A S+ +M+ + KP+ TY + G+ + V + A G + +V TY
Sbjct: 284 KVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTY 342
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
LI+G K + D ++EM ++P I +++GLC ++ V + +
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHD 402
Query: 278 GGWKINENMAQKLVKCYCELGRVD 301
G N L+ C+ G +D
Sbjct: 403 RGQPANVITYSSLIDGLCKNGHLD 426
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 127/326 (38%), Gaps = 7/326 (2%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L RL+ LKG + L LI + + F V + +G PD+ N+LI
Sbjct: 81 LSHRLE--LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V AL + ++ ++ ++ N +Y I+G +G+ A K
Sbjct: 139 LCLKGQVKKALHFHDKLL-AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKP 197
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV Y ++I K + + EM GI + ++ G C KL L
Sbjct: 198 NVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ N LV C+ G+V E + L + K P+V+ +S ++ Y
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT--YSTLMDGYF 315
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRR 391
L + ++ M G++ ++I + + D L+LF + + +
Sbjct: 316 LVYEVKKAQHVFNAMSLMGVT-PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEM 417
TY L+ G ++G + +I+EM
Sbjct: 375 VTYSSLIDGLCKSGRIPYVWDLIDEM 400
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 3/170 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E +GI+PD N LI C C G + S+ ++ Y P++ T+ I+G
Sbjct: 952 LELKGIQPDLFTLNILI-NCFCHMGQITFNFSILAKILK-RGYHPDTITFTTLINGLCLK 1009
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G V+ ++ +A GF +N +Y +LI+G K D + + ++ P + +
Sbjct: 1010 GQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMY 1069
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+++ LC + + + + G + L+ +C +G++ E
Sbjct: 1070 NTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKE 1119
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 5/183 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F +Q S+ LI + +A + L ++D L + + Y +I K Q V
Sbjct: 1026 GFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVM--YNTIIDALCKHQLVS 1083
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F M +GI D +N+LI G + A+ L MV + PN +TY+
Sbjct: 1084 KAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMV-LKTINPNVRTYNIL 1142
Query: 186 ISGFSSLGN--VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G +D + G N T+E +I + + D V++ EM++
Sbjct: 1143 VDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIAR 1202
Query: 244 GII 246
G++
Sbjct: 1203 GLL 1205
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K +P+ + M +G + ++SLI +G + A++LF M
Sbjct: 377 YSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKM- 435
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN+ T+ + G G + + + + G+ +NV TY +I G K
Sbjct: 436 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLL 495
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +M G IP E ++ L
Sbjct: 496 EEALTMLSKMEDNGCIPDAVTFEIIIIAL 524
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 4/220 (1%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L RL+ LKG + L LI + + F + + +G PD+ F +LI
Sbjct: 948 LSHRLE--LKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLING 1005
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V AL + ++ ++ ++ N +Y I+G +G+ A K
Sbjct: 1006 LCLKGQVNKALHFHDKLL-AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V Y ++I K + + EM GI + ++ G C KL L
Sbjct: 1065 DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 1124
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ N LV C+ G+ D L+E L L+K
Sbjct: 1125 NKMVLKTINPNVRTYNILVDALCKEGK-DLLDESLSMLSK 1163
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 9/254 (3%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
WR+ KGN LD Y+ I + G +V + V ME G+ P+ V+ +LI
Sbjct: 137 WRVFNETKGNVK-LDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDG 195
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
C +GD+ LF M + N TY I+GF +G + Y G
Sbjct: 196 CCKNGDIERGKQLFYKM-GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVP 254
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV TY S+I ++ ++EM G+ ++ ++ GLC R++ + +
Sbjct: 255 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 314
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-----EVLLHFFSGI 327
+ G N L+ YC +G +D+ + QSP +L+ FS
Sbjct: 315 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEA 374
Query: 328 IRLYALSDRLDDVE 341
++D + ++E
Sbjct: 375 KNSAGVTDMVREME 388
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + V A + M+ G+ P+ +N+LI G++ A SLF M
Sbjct: 294 YNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK 353
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS + P+ TY+ I+GFS N + A G S + TY L+ +++ +
Sbjct: 354 SSGQ-SPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNI 412
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + Y M G++ I I ++ GLC + K L K N+ + +
Sbjct: 413 EKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTM 472
Query: 291 VKCYCELG 298
+ YC+ G
Sbjct: 473 IYGYCKEG 480
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + N+ A +++SME G+ D ++ LI GD+ A LF+ +
Sbjct: 399 YTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL- 457
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KPN Y+ I G+ G+ + G NV +Y S I K +
Sbjct: 458 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKW 517
Query: 231 DSVDRFYEEMMSLGIIPSIPI 251
+ ++M+ LG+ PSI I
Sbjct: 518 TEAEVLLKDMIELGLKPSISI 538
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 1/212 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI + N+ A +F M++ G P A +N LI + + +
Sbjct: 326 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 385
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M + P+ TY + N++ + Y++ AG ++ Y LIHG
Sbjct: 386 EM-EARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVV 444
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + ++ + + + P+ I ++ G C R LK + G N
Sbjct: 445 GDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASY 504
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ C+ + E E L+ + + P +
Sbjct: 505 NSTIXILCKDEKWTEAEVLLKDMIELGLKPSI 536
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEY----KPNSKT 181
A +F M+ G P++ + +LI +G+V AL L E++ + +Y KP T
Sbjct: 180 ATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVIT 239
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G +G D + + A G +V +Y +LIHG A +D ++EM+
Sbjct: 240 YSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMV 299
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G+ P + +++ LC K+ K L+ ++ G N L+ +C +G ++
Sbjct: 300 DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLN 359
Query: 302 ELEE 305
E
Sbjct: 360 SARE 363
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 40/261 (15%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H+F M QG++PD F+ LI G V A L E+M+ PN TY++ I G
Sbjct: 293 HLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQ-RGIVPNLITYNSLIDG 351
Query: 189 FSSLGNV------------------------------------DAMNKWYAANIAAGFSV 212
F +G++ +AMN Y + G S
Sbjct: 352 FCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMN-LYNEMLQVGKSP 410
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV TY +L+ G + + + M + G+ + I L+GLC L
Sbjct: 411 NVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELF 470
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
L +K+N L+ C+ G+++ E E L++ P+V+ ++ +I +
Sbjct: 471 NELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVT--YNIMIHGFC 528
Query: 333 LSDRLDDVEYSVGRMGKQGLS 353
++D+ +M + G +
Sbjct: 529 KVGQVDNANILFEKMEENGCT 549
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+AQG+ PD +++LI C+G + LF+ MV + +P+ T+ I
Sbjct: 256 AKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMV-DQGVQPDMVTFSVLI 314
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G V K I G N+ TY SLI G D +S + M S G+
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLE 374
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P ++ G C K+ + +L G N L+K + G+V +
Sbjct: 375 PDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGD 430
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 3/231 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM ++G++PD + +LI + V A++L+ M+ + PN TY +
Sbjct: 361 ARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK-SPNVTTYGTLL 419
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V K + G S N Q Y + G K + E+ S
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+I +++GLC KL+ + L G + + ++ +C++G+VD
Sbjct: 480 LNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANIL 539
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
E + + +P+++ ++ ++ + ++L++V + +M ++ +S +A
Sbjct: 540 FEKMEENGCTPDIIA--YNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAA 588
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM +F +++ K + ++ LI +G + TA LFE +S E +P+ TY+ I
Sbjct: 466 AMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFE-KLSQEGLQPDVVTYNIMI 524
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +G VD N + G + ++ Y +L+ G + + V + +M+ +
Sbjct: 525 HGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVS 584
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+ V++ LC K ++ K F+ L
Sbjct: 585 PNAASCTIVVDMLC---KDEKYKKFVDLL 610
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 48/332 (14%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ M G+ PD S++ CLC+ + V+ + Y PN TY I G
Sbjct: 113 LYNEMRLAGLSPDLFTL-SILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGL 171
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF------------------- 230
+ + + G + N TY +LI G + +
Sbjct: 172 CMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGV 231
Query: 231 ----------------------DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
D +EEM + G+IP + ++ G C K D+
Sbjct: 232 NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQS 291
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
K ++ G + + L+ C+ G+V E ++ LE + + P ++ ++ +I
Sbjct: 292 KHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLIT--YNSLI 349
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGS 386
+ + L+ M +GL ++ C ++ + ++L+ + ++
Sbjct: 350 DGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWK--VKEAMNLYNEMLQVG 407
Query: 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G + G G + MK
Sbjct: 408 KSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMK 439
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 75/328 (22%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE------------- 173
A+ + + G++PD+ +N+LI AC ++ A+++FE M++SE
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176
Query: 174 ---------------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
++P++ TY++ + F+ G+V+ + + + AGF
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ TY ++IH K D Y+EM ++G P +++ L K+DR+
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG---KMDRI---- 289
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
E G+V LE + P ++ FS +I YA
Sbjct: 290 ----------------------SEAGKV------LEEMADAGLKPTLVT--FSALICAYA 319
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR--LDLFLDHIKGSYKLR 390
S R DD E + RM + G+ K +V+ F + R + L+ IK YK
Sbjct: 320 KSGRQDDAERTFDRMVESGV--KPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD 377
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y L+A + +++ VI +M+
Sbjct: 378 DGLYQVLLAALAKGNEHDEIEGVIQDME 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 132/322 (40%), Gaps = 21/322 (6%)
Query: 92 VLEWRLDKMLKGN---ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
+ E+ +MLK + C D Y LI + + P A VF M+ GI P ++ S
Sbjct: 499 IQEYSRKQMLKRGSFGQDC-DLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQS 557
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA-NIA 207
+I C G TA L + S+ A I + L W A N
Sbjct: 558 IIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKL------KLWQQAENFV 611
Query: 208 AGF----SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G V+ + + +LIH ++ ++ ++ M+ G +P++ + ++ L
Sbjct: 612 KGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDG 671
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
+LD + ++ L KI+++ +++ + + G V E+ + + P +H
Sbjct: 672 RLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPN--MHL 729
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMVICSYFRCAAYDR-LDLFLD 381
+ +I L + R DVE V M +G FK V ++ Y +DR ++++
Sbjct: 730 YRIMISLLCHNKRFRDVELMVAEM--EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHS 787
Query: 382 HIKGSYKLRRATYDFLVAGYRR 403
++ + TY+ L+ Y R
Sbjct: 788 ILEAGLEPDEDTYNTLIVMYSR 809
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 52/299 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGD------VVTALSLFEIMVSSEEYKPNSK 180
A +F M +G P N ++ A + G VV L +I +S
Sbjct: 641 ARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISK-------S 693
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T + F+ G+V + K Y AAG+ N+ Y +I + F V+ EM
Sbjct: 694 TVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM 753
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G P + +L +L DR +L G + +E+ L+ Y
Sbjct: 754 EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSR---- 809
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
N PE G LY MGK+GL+ K E
Sbjct: 810 -------------NFRPE------EGFTLLY--------------EMGKRGLTPK-LESY 835
Query: 361 EMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++++ + + +++ DL + ++ Y+L R+ Y ++ YR A K + +++ MK
Sbjct: 836 KILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMK 894
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 124/288 (43%), Gaps = 7/288 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNV 124
+ S +++A++ +L +S A+ +L L + N + Y L+ AL + Q
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRLLASMLRDGVAPN---VYTYNILVRALCARGQRE 171
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
V M G P+ +N+L+ A +G+V A L +M +P+ T++
Sbjct: 172 EALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGG-VRPSLVTFNT 230
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++G G ++ K + G + + +Y +L+ G KA + EM G
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++P + ++ +C L+R + + + G ++NE L+ +C G +D+
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ + +C P V+ ++ +I Y R+D+ + M +G+
Sbjct: 351 LAMKEMRECRIQPSVVC--YNVLINGYCKLGRMDEARELIHEMEAKGM 396
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 34/230 (14%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-------------------- 166
A+ VF M +G+ PD F SLI A +G++ A++L
Sbjct: 279 ALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALID 338
Query: 167 ---------EIMVSSEEYK-----PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ +++ +E + P+ Y+ I+G+ LG +D + A G
Sbjct: 339 GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V TY +++ G K D DS +M+ G++P ++ GLC R+L
Sbjct: 399 DVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELF 458
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +L G + +E L+ +C+ G V + + + K P+V+ +
Sbjct: 459 EKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTY 508
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + A + MEA+G+KPD +++++ GD +A L M+
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKML 427
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P++ TY + I G + + + + G + TY +LI G K +
Sbjct: 428 K-KGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNV 486
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
++EM+ G++P + +++GL
Sbjct: 487 QKALSLHDEMIKKGVLPDVVTYSVLIDGL 515
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 16/231 (6%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y+ +++ K+ + A + M +G+ PD+ ++SLI +
Sbjct: 394 KGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGD 453
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LFE M+ +P+ TY I G GNV + I G +V TY LI
Sbjct: 454 ACELFEKMLQLG-LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLI 512
Query: 222 HGSLKARDFDSVDRF---------------YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G K+ R YE +M + +L+G + ++
Sbjct: 513 DGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMN 572
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ + +L WK++ ++ L+ +C G + + + L +C SP
Sbjct: 573 QADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSP 623
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 122/296 (41%), Gaps = 10/296 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M P + +NSLI +GD+ A+ L MV ++ P+ TY +
Sbjct: 233 AVDIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-DKCAPDVVTYTTLM 288
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S F +G +D + + +A S +V T+ SL+ G + EE+ G
Sbjct: 289 SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCP 348
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I V++G C ++ + + + G+ N LV C GR D+ +
Sbjct: 349 PTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY 408
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L+ L + ++ I+ R DD M ++G +A +V
Sbjct: 409 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV--- 465
Query: 367 YFRCAAYDRL---DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
+ C A+ +L + IK + T D +V+ Y RAG+ K D + +E++
Sbjct: 466 FALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 12/295 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + M +G+ ++ +++L+ C C + A++L E M + P TY++
Sbjct: 93 ARELVEEMLHRGMAANAITYSALVDGLCKCE-RLDEAVALVETM-AERGCAPTVVTYNSI 150
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+GF VD + + +A G ++ TY +LI G K+RD E+ G
Sbjct: 151 ITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGF 210
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I V++GLC +L + + I N L+ YC G +DE
Sbjct: 211 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYN---SLIGGYCRAGDMDEAIR 267
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV-- 363
L + +P+V+ ++ ++ + RLDD +M LS +V
Sbjct: 268 LLGKMVDDKCAPDVVT--YTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325
Query: 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+C R D L+L + + TY+ +V GY +A K + ++ + +
Sbjct: 326 LCGEGR--MEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 110/298 (36%), Gaps = 52/298 (17%)
Query: 60 DSVDIFAFNS---SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YAC 113
D+VDIF S + ++++LI + + L L KM+ ++ C + Y
Sbjct: 232 DAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRL---LGKMV--DDKCAPDVVTYTT 286
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L++ K+ + A +F M A + PD F SL+ G + AL L E ++
Sbjct: 287 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE-EITRR 345
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA------ 227
P TY+ + G+ V + A + GF N TY L+ G +A
Sbjct: 346 GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 405
Query: 228 -----------------------------RD--FDSVDRFYEEMMSLGIIPSIPILEKVL 256
RD D +FYEEM+ G +P+ V+
Sbjct: 406 LQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 465
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLT 311
LC + + L+ ++ G +V YC G + DEL +L T
Sbjct: 466 FALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLYT 523
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 6/201 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ + V A M A+G PD + +LI S DV L L V+ + P+
Sbjct: 156 RARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLG-EVTRRGFTPDI 214
Query: 180 KTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY I G G + DA++ + + A TY SLI G +A D D R
Sbjct: 215 VTYSTVIDGLCKAGRLRDAVDIFEEMSCAP----TAITYNSLIGGYCRAGDMDEAIRLLG 270
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ P + ++ C +LD + ++ + LV C G
Sbjct: 271 KMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 330
Query: 299 RVDELEEQLETLTKCNQSPEV 319
R+++ E LE +T+ P +
Sbjct: 331 RMEDALELLEEITRRGCPPTI 351
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P + ++ I G G + A+ + N A + TY L+HG KAR
Sbjct: 2 NPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA--HPPDFLTYTKLVHGLSKARRLRDAV 59
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +EM+S +P L V++ LC ++D + ++ +L G N LV
Sbjct: 60 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ R+DE +ET+ + +P V+ ++ II + + R+D+ + +M +G
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVT--YNSIITGFCRARRVDEAHGFMEQMVAEG 174
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 3/179 (1%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ + + MVS+ + P++ T + VD + + G + N TY +L+
Sbjct: 58 AVQVLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALV 116
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K D E M G P++ ++ G C R++D F++ ++ G
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCH 176
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ L+ +C+ V E L +T+ +P+++ + G+ + L D +D
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 235
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ NV AM +F ++G PD+ ++ ++I +G + A S+ M
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +K ++K Y+ I+GF + + G +V TY +L+ GS KA DF
Sbjct: 381 EAG-FKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+VD +M+ G PS+ ++ G C K+D L+ + G N + L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499
Query: 291 VKCYCELGRVD 301
+ C+ G VD
Sbjct: 500 IDFLCKRGDVD 510
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K ++ +++L+ A L + +V A+ LF +S E + P++ Y ISG + G ++
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMS-EGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
++ AGF ++ + Y LI G + + +EM +GI P + +L G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C V L ++ G + + LV YC++G++DE L ++ + P
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493
Query: 320 LLH 322
+++
Sbjct: 494 VIY 496
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + + A + M+ GI+PD +N+L+ +GD L M+
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ T+ + G+ +G +D + + +G N Y +LI K D
Sbjct: 451 D-DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D ++EM + ++ +L+GL
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 62/319 (19%), Positives = 128/319 (40%), Gaps = 20/319 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ ++A +V++VP ++ M+ ++PD + L+ +G V AL + + M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198
Query: 170 VSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLK 226
+ + +P+ T + + G G V + +++ G N TY LI +
Sbjct: 199 SRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCR 258
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL-----LGGGWK 281
+ E+M + G+ +I L ++ GLC + R + L+F + K
Sbjct: 259 VGNISMAYELVEKMENEGVPQNIVTLNTIVGGLC---RAGRTGAALEFFREKRTVWPEGK 315
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRLYALSDRLDD 339
N LV V E SP+ +++F SG+ + + RL+D
Sbjct: 316 GNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ----AGRLED 371
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA-YDRLDLFLDHIKGSYKLRRATYDFLV 398
M + G + + ++I + R ++ +L + + + TY+ L+
Sbjct: 372 ACSMASSMKEAGFKLDT-KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLL 430
Query: 399 AGYRRAGLSGKLDSVINEM 417
+G +AG +D ++ +M
Sbjct: 431 SGSCKAGDFAAVDELLGKM 449
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L++ S K + + M G +P F +L+ G + AL + M
Sbjct: 426 YNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD 485
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG----SLK 226
S + PN+ Y+ I G+VD + + NV T+ +L+ G ++
Sbjct: 486 ESGIH-PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMP 544
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ F+ +D+ EE P ++ ++E L + DR+K F++
Sbjct: 545 EKAFELMDQMREER----CFPDYVTVDVLMEWLPVIGETDRLKRFMQ 587
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMH 129
F+++ LI + + KKA + E + +G + + Y LI ALS K Q V
Sbjct: 215 FTYNILINGHCKEGNVKKALEIFE---NMSRRGVRATVVTYTSLIYALSKKGQ-VQETDK 270
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
+F +GI+PD ++N+LI + SG++ A FEIM E+ + P+ TY+ +
Sbjct: 271 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA---FEIMGEMEKKRIAPDDVTYNTLMR 327
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G LG VD K G ++ TY +LI G D R EMM+ G P
Sbjct: 328 GLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 387
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ +++GLC + D ++ +K ++ G
Sbjct: 388 TLLTYNALIQGLCKNGQGDDAENMVKEMVENG 419
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 123/303 (40%), Gaps = 12/303 (3%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ + M E GI P+ + ++I G V A+ +F+ M++ E KP
Sbjct: 86 GRVQ---AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 142
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A I G+ G +D + + G ++ V TY L+H
Sbjct: 143 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 202
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM G+ P + ++ G C + + + + G + L+ +
Sbjct: 203 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 262
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G+V E ++ + + P+++L ++ +I ++ S +D +G M K+ + +
Sbjct: 263 GQVQETDKLFDEAVRRGIRPDLVL--YNALINSHSTSGNIDRAFEIMGEMEKKRI---AP 317
Query: 358 EDVEMVICSYFRC--AAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+DV C D +D + K + TY+ L++GY G +
Sbjct: 318 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 377
Query: 415 NEM 417
NEM
Sbjct: 378 NEM 380
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 3/183 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL + KK Q+ +L + + +G L Y LI N+ A + ME
Sbjct: 253 TSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 312
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ I PD +N+L+ G V A L + M + +P+ TY+ ISG+S G+V
Sbjct: 313 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVK 371
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + GF+ + TY +LI G K D + +EM+ GI P ++
Sbjct: 372 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 431
Query: 257 EGL 259
EGL
Sbjct: 432 EGL 434
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 11/284 (3%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++A I L Q+ + +A LE + M KG Y L+ K + A +
Sbjct: 277 FTYNAFIGGLCQTGAVDEA---LEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F SM + G+ P+ + +LI + G++ AL + + M++ K N TY+A I G +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMIT-RGLKLNVVTYNAMIGGIA 392
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + + + AG + TY LI G LK+ D EM + + PS
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPF 452
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GLC L + L ++ G K N M L+K Y + R + E L+ +
Sbjct: 453 TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM 512
Query: 311 TKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P++ + G+ R + ++++ + + MG++G+
Sbjct: 513 IANGVLPDLFCYNCLIIGLCR----AKKVEEAKMLLVDMGEKGI 552
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 5/270 (1%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
+ K +S+ N ++F++ ALI ++ + ++A + + + + LK N + Y
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN---VVTYN 385
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
+I K + AM +F M GI+PD+ +N LI L S D+ A L M +
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM-KA 444
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ P+ TY ISG ++ N+ I G NV Y +LI ++ ++
Sbjct: 445 RKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+ M++ G++P + ++ GLC +K++ K L + G K N + +
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH 322
Y + G + E + + P +++
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSGIVPNNVIY 594
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 7/255 (2%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAM 128
S F++ LI+ L SS +KA VL+ + +K N + Y LI + A+
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN---VFMYGTLIKAYVQESRYEMAI 506
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M A G+ PD +N LI LC V + + + + KPN+ TY AFI+
Sbjct: 507 ELLKIMIANGVLPDLFCYNCLIIG-LCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+S G + +++ +++G N Y LI G + ++ M+ G+IP
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPD 625
Query: 249 IPILEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
I ++ L K + + FLKF L G + + L+ +C+ G +++ +
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFLKF-LKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684
Query: 308 ETLTKCNQSPEVLLH 322
+ + +P ++++
Sbjct: 685 DEMLHNGINPNIVVY 699
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 132/322 (40%), Gaps = 25/322 (7%)
Query: 1 MALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLD 60
MA AC +L+ K+ + P + L+ +S+ + +N ++ ++++ V
Sbjct: 432 MAKACELLAEMKARKLTPSPFTYSVLISGL-CHSSDLQKANEVLDQMIRNGVK------- 483
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALS 118
+ F + LI + S + ++ +E L K++ N D Y CLI
Sbjct: 484 --------PNVFMYGTLIKAYVQES--RYEMAIE--LLKIMIANGVLPDLFCYNCLIIGL 531
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
+ + V A + M +GIKP++ + + I SG++ A F+ M+SS PN
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG-IVPN 590
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y I G +GN + + G +++ Y ++IH K +
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK--CYCE 296
+ + G++P + + ++ G C +++ +L G N + L+ YC+
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCK 710
Query: 297 LGRVDELEEQLETLTKCNQSPE 318
G + E + + + SP+
Sbjct: 711 SGNLTEAFKLFDEMISKGISPD 732
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ SM I PD + ++I A GDV+ + M +E KPN TY+AFI G
Sbjct: 229 VYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM--EKECKPNLFTYNAFIGGL 286
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G VD + + G + TY L+ G K + +E M S G+ P+
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+++G ++ ++ G K+N
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A +F M ++GI PD ++ LI C G++ ALSLF + ++ +
Sbjct: 710 KSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH--EAQQKSVGSL 767
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+++ I F G V + + + + N+ TY LI KA + ++ + +
Sbjct: 768 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 827
Query: 240 MMSLGIIPS 248
M + IIP+
Sbjct: 828 METRNIIPN 836
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 3/243 (1%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +D FI F LG ++ + + A+I+ GF + +L+ LKA + Y
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M+ I+P + V++ C + + K L + K N + C+
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS-EMEKECKPNLFTYNAFIGGLCQT 289
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G VDE E + + + P+ H ++ ++ + R + + M GL+
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDG--HTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRF 347
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ + L + + I KL TY+ ++ G +AG K S+ NEM
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407
Query: 418 KFA 420
A
Sbjct: 408 LMA 410
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ NV AM +F ++G PD+ ++ ++I +G + A S+ M
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +K ++K Y+ I+GF + + G +V TY +L+ GS KA DF
Sbjct: 381 EAG-FKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+VD +M+ G PS+ ++ G C K+D L+ + G N + L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499
Query: 291 VKCYCELGRVD 301
+ C+ G VD
Sbjct: 500 IDFLCKRGDVD 510
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K ++ +++L+ A L + +V A+ LF +S E + P++ Y ISG + G ++
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMS-EGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
++ AGF ++ + Y LI G + + +EM +GI P + +L G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C V L ++ G + + LV YC++G++DE L ++ + P
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493
Query: 320 LLH 322
+++
Sbjct: 494 VIY 496
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + + A + M+ GI+PD +N+L+ +GD L M+
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ T+ + G+ +G +D + + +G N Y +LI K D
Sbjct: 451 D-DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D ++EM + ++ +L+GL
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 62/319 (19%), Positives = 128/319 (40%), Gaps = 20/319 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ ++A +V++VP ++ M+ ++PD + L+ +G V AL + + M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198
Query: 170 VSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLK 226
+ + +P+ T + + G G V + +++ G N TY LI +
Sbjct: 199 SRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCR 258
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL-----LGGGWK 281
+ E+M + G+ +I L ++ GLC + R + L+F + K
Sbjct: 259 VGNISMAYELVEKMENEGVPQNIVTLNTIVGGLC---RAGRTGAALEFFREKRTVWPEGK 315
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRLYALSDRLDD 339
N LV V E SP+ +++F SG+ + + RL+D
Sbjct: 316 GNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ----AGRLED 371
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA-YDRLDLFLDHIKGSYKLRRATYDFLV 398
M + G + + ++I + R ++ +L + + + TY+ L+
Sbjct: 372 ACSMASSMKEAGFKLDT-KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLL 430
Query: 399 AGYRRAGLSGKLDSVINEM 417
+G +AG +D ++ +M
Sbjct: 431 SGSCKAGDFAAVDELLGKM 449
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L++ S K + + M G +P F +L+ G + AL + M
Sbjct: 426 YNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD 485
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG----SLK 226
S + PN+ Y+ I G+VD + + NV T+ +L+ G ++
Sbjct: 486 ESGIH-PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMP 544
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ F+ +D+ EE P ++ ++E L + DR+K F++
Sbjct: 545 EKAFELMDQMREER----CFPDYVTVDVLMEWLPVIGETDRLKRFMQ 587
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 5/309 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LIA K A+ F M+ G KPD +NS++ + + AL+++ M+
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
Y PN T+ ++G G D K + G N Y ++ G +A+
Sbjct: 194 KLN-YNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D V R M G P +L+G C ++D + L+ G+ + L
Sbjct: 253 DDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSL 312
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ R DE++E + K P+V+L ++ +IR + +D + M ++
Sbjct: 313 IDGLFRAKRYDEVQEWCRKMFKAGIEPDVVL--YTILIRGFCEVGMVDYALNMLNDMTQR 370
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
GLS +I + D+ L L+ K TY L+ G R GL +
Sbjct: 371 GLS-PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDE 429
Query: 410 LDSVINEMK 418
+ N+M+
Sbjct: 430 ARQIFNQME 438
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 20/286 (6%)
Query: 87 KKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
K+ V EW KM K G E + Y LI +V V +A+++ M +G+ PD+
Sbjct: 320 KRYDEVQEW-CRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYC 378
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+LI C ++ ++ +S + P S TY I G G +D + +
Sbjct: 379 YNALIKG-FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM 437
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI-------------- 251
G S ++ T+ +LI G KA + + + + M +G PS+ +
Sbjct: 438 ENLGCSPSIMTFNALIDGLCKAGELEEARHLFYK-MEIGKNPSLFLRLSQGADRVMDTAS 496
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
L+ ++E LC + + L L G + L+ +C+ ++ + L
Sbjct: 497 LQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQ 556
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
SP+ + + +I + DR +D + +M K G + SA
Sbjct: 557 LKGHSPDSVT--YGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSA 600
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 127 AMHVFTSMEAQGIKP--------------DSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
A H+F ME G P D+A +++ SG ++ A L + ++
Sbjct: 465 ARHLFYKMEI-GKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLL-MQLAD 522
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+ TY+ I+GF N++ K + G S + TY +LI G + +
Sbjct: 523 SGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREED 582
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKFLLGGGWKINENMAQKLV 291
R ++M+ G PS + + ++ C + KL S +LK+L + +E + KL
Sbjct: 583 AFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETL--KLA 640
Query: 292 KCYCELGRVDELEEQLETLTKCN 314
+ + E G ELE+ + L + N
Sbjct: 641 EEHFEKG---ELEKAVRCLLEMN 660
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 4/263 (1%)
Query: 41 NPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDK 99
N +I+ L +V + + L +D F +++ L+ LVL +
Sbjct: 277 NMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM-- 334
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+ G + Y LI K N+ AM F M +G++P+ + SLI G +
Sbjct: 335 LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFM 394
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A +++ M+ S + P TY+A ++G G ++ G S +V +Y +
Sbjct: 395 DEAYRIWDEMIRSG-FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+I G + ++ D + EM+ G+ P +++GLC +R+L+ + +L
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513
Query: 280 WKINENMAQKLVKCYCELGRVDE 302
+E L+ YC+ G ++E
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNE 536
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 136/326 (41%), Gaps = 12/326 (3%)
Query: 55 IKTTLDSVDIFAFNS---SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
I+ L+ VD+ N S++A++ S+ +K + E +M+ S L+ +
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRC--RKPVIFAEKVYREMIASGVS-LNVF 204
Query: 112 ACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ I + G N+ + F ME P+ +N++I A + A L M
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E +PN TY+ I+G +G ++ + A GF+ + TY +L++G K +
Sbjct: 265 -GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGN 323
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
F + EM+ G+ P + ++ +C L+R F + G + N
Sbjct: 324 FHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ + + G +DE + + + P ++ ++ ++ + +S R+++ + M
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVT--YNALLNGHCVSGRMEEAIGLLRGMEG 441
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDR 375
+GLS +I + R DR
Sbjct: 442 KGLS-PDVVSYSTIIAGFCRYQELDR 466
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A+++ M +G PD+ +N LI A L + +
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLL-LKL 579
Query: 171 SSEEYKPNSKTYD---------------AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+E PN TYD A I GF G ++ ++ + + I N
Sbjct: 580 FYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEA 639
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y +IHG + + + Y+EM+ G IP + +++ L + +++ ++ +
Sbjct: 640 VYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDI 699
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
L + +++ LV+ + G +D + L + K
Sbjct: 700 LRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAK 736
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 120/291 (41%), Gaps = 6/291 (2%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H S+E +PD + +LI G V A LF MV++ +PN+ TY+A + G
Sbjct: 82 HFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG 141
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+DA F+ +V TY +L+ + D + +M G +P+
Sbjct: 142 LCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPT 201
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ ++ GLC R+L ++ + N ++ C+ ++DE ++ L+
Sbjct: 202 LVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLD 261
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICS 366
+ P+++ ++ ++ ++ + RLD + RM QG ++ +C
Sbjct: 262 RMVSEGCRPDLVA--YTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
R D ++F + + TY L+ GY RA + V+ EM
Sbjct: 320 VGR--VDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 368
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI K+ V A +F M A G +P++ +N+L+ LC D + A
Sbjct: 99 YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG-LCKQDRLDAARAVITE 157
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ P+ TY+ ++ LG VD + G+ + ++ ++I G +AR
Sbjct: 158 ARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARR 217
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ EM+ P++ V++GLC +LD + L ++ G + +
Sbjct: 218 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 277
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
LV + GR+D L + P+V+ ++ +I R+DD
Sbjct: 278 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVT--YTVVIDKLCKVGRVDDAH 327
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 14/230 (6%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRF 236
+S TY+ I GF + ++DA G N +T ++ G + R +++ F
Sbjct: 24 SSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHF 83
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS----FLKFLLGGGWKINENMAQKLVK 292
+ P + ++ GLC KL RV + F K + GG + N LV
Sbjct: 84 DASLELAHAQPDVVSYTTLINGLC---KLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD 140
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C+ R+D + K + +P+V+ + + + L+ L R+D+ + +M ++G
Sbjct: 141 GLCKQDRLDAARAVITEARKRDFAPDVVT-YNTLMAALFQLG-RVDEALATFTQMTEEGY 198
Query: 353 --SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
+ S + +C R A D L++F + I + TY ++ G
Sbjct: 199 VPTLVSFNAIITGLCRARRLA--DALEVFNEMIDRDFHPNLVTYSVVIDG 246
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 140/356 (39%), Gaps = 10/356 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
VSQ L+S+ + ++ L+ L + S A VL LD N L
Sbjct: 129 VSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN---LVT 185
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + + V A+ + M +G P+ + +LI G V A ++ M+
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 245
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ Y+ I+G VD ++ G +V TY S+I+G ++
Sbjct: 246 D-KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 304
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R + S G P + + +++GLC K+D + + G G + L
Sbjct: 305 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTL 364
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GRVDE L + + P + ++ +I+ + LD+ V M +
Sbjct: 365 IDGLCKAGRVDEAHLLLARMVRMGTPPSTM--TYNSLIKGLCDLNHLDEAIELVEEMERS 422
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR--LDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
+ SA ++I R D LD F + I TY L+ G +++
Sbjct: 423 NCA-PSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKS 477
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL--SGKVQNVPFAM 128
++++LI L +++ P +AQ + E K ++ + S + L L +GK++ AM
Sbjct: 11 VTYNSLIDGLCKNNEPDRAQELFEHM--KSVECSPSMVTYNTLLDGLFRTGKLER---AM 65
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M + D FN L+ +G + TAL F M + PN TY I G
Sbjct: 66 ALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKM--DDRCSPNVITYSVLIDG 122
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
V + + A G S +V TY L+ G K + EM+ G +P+
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 182
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +L GLC R++ + ++ + G N L+ C++GRV + L
Sbjct: 183 LVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLA 242
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ +P++++ ++ +I +D++D+
Sbjct: 243 DMIDKGGTPDLMI--YNMLINGLCKADQVDE 271
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 2/163 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K V A ++ M G D +++LI +G V A L MV
Sbjct: 326 YSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 385
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TY++ I G L ++D + + + + TY LIHG +
Sbjct: 386 RMGT-PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERV 444
Query: 231 DSVD-RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
DS +++EM+ G+IP +LEGL + L ++ +
Sbjct: 445 DSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 487
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 81/237 (34%), Gaps = 36/237 (15%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G +P+ +NSLI + + A LFE M S E P+ TY+ + G G
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHM-KSVECSPSMVTYNTLLDGLFRTG 59
Query: 194 -----------------------NVDAMNKWYAANIAAGF----------SVNVQTYESL 220
N+ A I S NV TY L
Sbjct: 60 KLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVL 119
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I G KA E M + G P + +++GLC K+ L+ +L G
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
N L+ C RV + + +T +P V+ + G+ ++ + D
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKD 236
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 12/218 (5%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + Y CLI L KV VP A+ + ME+ GIK ++ ++ LI + D A
Sbjct: 421 GFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANA 480
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
S+FE M+ S +P+ Y+ + F +GN+D + + + +T+ +I
Sbjct: 481 FSIFEDMIKS-GLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIE 539
Query: 223 GSLKARD----FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
G A D FD++D M G P++ ++ GL + ++++ S L +
Sbjct: 540 GFAVAGDMKRAFDTLDL----MRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIA 595
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G NE+ +++ Y G ++ + E TK +S
Sbjct: 596 GIAPNEHTYTIIMRGYAASG---DIGKAFEYFTKIKES 630
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Query: 55 IKTTLDSVDIFAFNS---SQFSWDALITSL-QSSSPKKAQLVLEWRLDKM-LKGNESCLD 109
+K D++D+ + + +++ALI L + +KA VL DKM + G
Sbjct: 547 MKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVL----DKMSIAGIAPNEH 602
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y ++ ++ A FT ++ G+K D ++ +L+ AC SG + +AL++ M
Sbjct: 603 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 662
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI-----AAGFSVNVQTYESLIHGS 224
S ++ N+ Y+ I G++ G+V W AA++ G N+ T+ S I+
Sbjct: 663 -SFQKIPRNTFIYNILIDGWARRGDV-----WEAADLLKQMKEDGIPPNIHTFTSYINAC 716
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
KA D + +EM +G+ P++ +++G DR + + G K +E
Sbjct: 717 CKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDE 776
Query: 285 NMAQKLV 291
LV
Sbjct: 777 AAYHCLV 783
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 112/297 (37%), Gaps = 40/297 (13%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ K + A F +M A+GI+P++ VF SL+ A +GD+ ALS E M
Sbjct: 253 EFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEM 312
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
SE + TY ISG+ + + + + ++N Y ++IH ++ +
Sbjct: 313 -KSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGN 371
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + EM GI I + ++ G + Q
Sbjct: 372 MDRAEELVREMEEDGIDAPIDVYHSMMHGY-------------------------TVVQD 406
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
KC E L +C P ++ + +I LY ++ M
Sbjct: 407 EKKCLI----------VFERLKECGFKPTIIS--YGCLINLYVKVGKVPKAIAISKEMES 454
Query: 350 QGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G+ + + M+I + + + +F D IK + RA Y+ LV + + G
Sbjct: 455 HGIKHNN-KTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMG 510
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 6/206 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G P +N+LI + V A+S+ + M S PN TY + G+++ G
Sbjct: 557 MRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKM-SIAGIAPNEHTYTIIMRGYAASG 615
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ +++ +G ++V YE+L+ K+ S EM I + I
Sbjct: 616 DIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYN 675
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++G R + LK + G N + + C+ G + E ++ +
Sbjct: 676 ILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADV 735
Query: 314 NQSPEVLLHFFSGIIRLYA---LSDR 336
P V F+ +I+ +A L DR
Sbjct: 736 GLKPNV--KTFTTLIKGWARVSLPDR 759
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/282 (18%), Positives = 104/282 (36%), Gaps = 50/282 (17%)
Query: 101 LKGNESCLDE------------YACLIALSGKVQNVPFAMHVFT---------------- 132
++G SC++E Y+ LI+ GK + A ++F
Sbjct: 302 MRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSN 361
Query: 133 -------------------SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
ME GI V++S++ D L +FE +
Sbjct: 362 IIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKEC- 420
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+KP +Y I+ + +G V + G N +TY LI+G + DF +
Sbjct: 421 GFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANA 480
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+E+M+ G+ P I ++E C +DR + + + + + +++
Sbjct: 481 FSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEG 540
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYAL 333
+ G + + L+ + + +P V+ + G++R + +
Sbjct: 541 FAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQV 582
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 2/221 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVT 161
G E + Y LI K +V A+ + ME +G + D +N+L+ SG+
Sbjct: 165 GYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQ 224
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A + M + P+ T+ A I F GN+D + Y + + N TY SLI
Sbjct: 225 AARILRDM-TKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLI 283
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G + ++ M S G P++ ++ G C R+++ + + G
Sbjct: 284 NGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLV 343
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ L+ YC++G++ ++ + C +P+++ H
Sbjct: 344 GDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITH 384
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 11/208 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +++ A+ +F ME +GI D+ +N+LI SG A L MV + PN
Sbjct: 732 KNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVK-RKIDPNV 790
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I F GN+ Y I N+ TY SLI+G ++
Sbjct: 791 IFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDL 850
Query: 240 MMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKF----LLGGGWKINENMAQKLVKCY 294
M+S G P + ++ G C ++R D +K F + L+G + N L+ Y
Sbjct: 851 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYN-----TLIHGY 905
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G+++ ++ + C P+++ +
Sbjct: 906 CQAGKLNVAQKVFNRMVDCGVPPDIVTY 933
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K N+ A +++ M + + P+ +NSLI G + A +F++MV
Sbjct: 793 FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY+ I+GF V+ K + G + TY +LIHG +A
Sbjct: 853 SKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKL 911
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + + M+ G+ P I +L+ LC K+++
Sbjct: 912 NVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEK 948
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K N+ A ++ M I P++ +NSLI G + A F++M
Sbjct: 244 FTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMA 303
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY+ I+GF V+ K + G + TY +LIHG +
Sbjct: 304 SKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ M+S G+ P I +L GLC
Sbjct: 363 RVAKDIFSWMVSCGVTPDIITHCILLHGLCV 393
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 117/300 (39%), Gaps = 7/300 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPN 178
K+ +++F ME GI D F LI C C CS AL+L M+ ++P+
Sbjct: 627 KMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCS-RFSLALALLGKMMKLG-FQPS 684
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T + ++GF + G NV Y ++I+G K RD ++ +
Sbjct: 685 IVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFY 744
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M GI+ ++ GLC + L+ ++ N L+ + + G
Sbjct: 745 GMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 804
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
+ E + + + + + P +L ++ +I + + RL D ++ M +G F
Sbjct: 805 NLLEAKNLYKEMIRRSVHPNILT--YNSLINGFCIQGRLGDAKHMFDLMVSKG-CFPDVV 861
Query: 359 DVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + + D + LF + TY+ L+ GY +AG V N M
Sbjct: 862 TYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 1/151 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL LF MV S+ P+ + ++ ++L + + + G S ++ ++ LI
Sbjct: 49 ALDLFLEMVQSQPL-PSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILI 107
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
H + +MM LG PSI +L G C R ++ S + ++ G++
Sbjct: 108 HCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYE 167
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK 312
N + L+ C C+ G V+ E L + K
Sbjct: 168 PNVVVYNTLIDCLCKNGDVNIALELLNEMEK 198
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 26/289 (8%)
Query: 37 VSSSNPLISRLLQ-------VPVSQIKTTLDSVDIFAFNSSQ---------FSWDALITS 80
V+ +P S+L Q + +I +LDS + + SQ DA+I
Sbjct: 91 VNPRSPRASKLRQHSYDARYASLVKIAESLDSCEATEEDVSQVLRCLGDKILEQDAVIVL 150
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++P+ A L + ++ E L Y + + K +N+ A +F M +G+K
Sbjct: 151 NNMTNPETALLAFGFFRKRLKPSREVIL--YNVTLKVFRKCRNLDRAEKLFDEMLERGVK 208
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAM 198
PD+ F+++I S A+ FE M E+ P+ TY A I + GNVD
Sbjct: 209 PDNITFSTIISCARVSSLPNKAVEWFEKM---PEFGCHPDDVTYSAMIDAYGRAGNVDMA 265
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
K Y + ++ T+ +LI + +FD YEEM +LG+ P++ I +L+
Sbjct: 266 LKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDA 325
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ ++ + K+ K + G + + L++ Y GR E+ L
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAY---GRARYAEDAL 371
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ G+ + A+ V+ M+ +G++ ++N+L+ C G A ++FE M
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+S T+ + I+ +S G V A + AGF N+ SLI KA
Sbjct: 414 SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRT 473
Query: 231 DSVDRFYEEMMSLGIIP 247
D V R ++ ++ L I P
Sbjct: 474 DEVVRTFDRLLELDITP 490
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 11/226 (4%)
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+WR+D + ++ LI + G N ++V+ M+A G+KP+ ++N+L+ A
Sbjct: 276 KWRIDPVT---------FSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAM 326
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ A ++++ M ++ +P+ TY A + + + Y G ++
Sbjct: 327 GRAKRPWQAKNIYKEMTNNG-LQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELS 385
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFL 272
V Y +L+ + +E+M S G +P ++ K+ ++ L
Sbjct: 386 VVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAML 445
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+L G++ N + L++CY + R DE+ + L + + +P+
Sbjct: 446 NAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPD 491
>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Brachypodium distachyon]
Length = 864
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 5/234 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY---KPNSKTYD 183
A + M AQG+ P+ FN I A +G V+ A +F M + E +P+ T+D
Sbjct: 224 AERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFD 283
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+SGF G VD GF V++Y + G +K EM
Sbjct: 284 VMLSGFCDAGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHE 343
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P+ +++GLC K V+ F+ G + L+ YC G
Sbjct: 344 GVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAA 403
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
L+ + + +P L ++ +++ + R +VE + RM ++G S +A
Sbjct: 404 NRILDEMAQKGCAPN--LFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTA 455
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 41/275 (14%)
Query: 117 LSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG V+N V A + + M +G++P+S +N +I LC + E V S
Sbjct: 321 LSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYN-IIVDGLCKEGKAFDVRRVEDFVRSGV 379
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P+ TY + + + S GN A N+ G + N+ TY L+ LKA V+
Sbjct: 380 MTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVE 439
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----- 289
R E M G +++GLC KL+ + + G +
Sbjct: 440 RLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLV 499
Query: 290 ------------------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L+ C+ GR DE +++L + + SP+ ++ + I Y
Sbjct: 500 SDSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVI--YDTFIHGY 557
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ GK L+ K D+E C+
Sbjct: 558 CMH-------------GKTSLAIKVLRDMEKRSCN 579
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 14/220 (6%)
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + Y L+ +L+ D V+ Y++++ G P + +LE L A ++D
Sbjct: 102 GGAAPPTPVYNRLLLAALREDRLDLVEALYKDLLLAGATPDVFTRNALLEALSAAGRMDL 161
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
+ + NE + L + YC GR + L + PE+ L + +
Sbjct: 162 ARRVFDAMPAR----NEFSSGILARGYCRAGR------SADALAVLDAMPEMNLVVCNTV 211
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRL--DLFLDHI 383
+ + R+D+ E V RM QGL+ + +C R R+ D+
Sbjct: 212 VAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWE 271
Query: 384 KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
+G + + T+D +++G+ AG+ + +++ M+ ++
Sbjct: 272 QGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFL 311
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 3/193 (1%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD +++L+ A G A M+ ++ P+S YD FI G+ G K
Sbjct: 510 PDRITYSTLMNALCKEGRFDEAKKKLVEMIG-KDISPDSVIYDTFIHGYCMHGKTSLAIK 568
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + ++Y LI G + + D + + EM GI ++ +++ C
Sbjct: 569 VLRDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFC 628
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE-TLTKCNQSPEV 319
R +++ L +L N L+K +C+ + + L+ C Q EV
Sbjct: 629 GRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALSTCGQK-EV 687
Query: 320 LLHFFSGIIRLYA 332
L + YA
Sbjct: 688 LYCLMCTELSTYA 700
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 38/230 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F+ M++ G+ P FNSL+ L G A S+F+ M + P++ T++ I
Sbjct: 116 AIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILI 175
Query: 187 SGFSSLGNVDAMNKWY------------------------------AANIAAG------- 209
GF VD +++ A N+ G
Sbjct: 176 RGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKD 235
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
S +V TY +L+ G ++ D +EEM+S G+ P+ +++GLC +K D++K
Sbjct: 236 LSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIK 295
Query: 270 SFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L +GG G+ + L+ C+ G DE + + + + P+
Sbjct: 296 EILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPD 345
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 118 SGKVQNVPFAMHVFTSM--EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+GKV+ A +V M + + + PD + +L+ ++ AL +FE MVS
Sbjct: 216 AGKVR---IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVS-RGL 271
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVD 234
KPN TY+ I G + D + + + GF + TY +L++ A +FD
Sbjct: 272 KPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEAL 331
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +++M L + P ++ LC R +R + L + ++ LV Y
Sbjct: 332 KMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAY 391
Query: 295 -------CELGRVDELEEQLETL-TKCNQSP 317
C+ G+ + E L K Q P
Sbjct: 392 NPIFDFLCKNGKTHKAERVFRQLMKKGTQDP 422
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 141/339 (41%), Gaps = 8/339 (2%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
+ P++A + +D+ G++ L Y L+A + + + + + +E G+K
Sbjct: 24 IGKGKPREAHSIFNSLMDE---GHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMK 80
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PDS +FNS+I A SG++ A+ LF M S KP + T++ I G+ + G + K
Sbjct: 81 PDSILFNSIINAFSESGNMKEAMKLFRKMKES-GCKPTTSTFNTLIKGYGNAGKTEEALK 139
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
G N +TY L+ + + +M++ G+ P +
Sbjct: 140 LLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYA 199
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ + R + + +L NE +V YC+ G + + + + + P
Sbjct: 200 EKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPN-- 257
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLF 379
L F+ +I+ + + + V+ + M + G+ ++ ++ D+ ++F
Sbjct: 258 LFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVR-PDVVTFSTIMNAWSSAGRMDKCKEIF 316
Query: 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
D +K + + L GY RAG K +S++ M+
Sbjct: 317 NDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMR 355
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 132/338 (39%), Gaps = 52/338 (15%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ AM +F M+ G KP ++ FN+LI +G AL L E + KPN +TY
Sbjct: 98 NMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGG-VKPNQRTY 156
Query: 183 DAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESL--------------------- 220
+ + + + N++ A N Y +A+G + TY +L
Sbjct: 157 NILVRAWCNKENMEEAWNMVYKM-VASGMQPDAVTYNTLARAYAEKGETIRAEEMILEML 215
Query: 221 --------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
++G K + RF M LG++P++ + +++G +
Sbjct: 216 NRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTE 275
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
V L + G + + ++ + GR+D+ +E + K P++ H FS
Sbjct: 276 GVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDI--HAFSI 333
Query: 327 IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF---RCAA---YDRLDLFL 380
+ + Y + + E + M K G+ +VIC+ C+A + ++
Sbjct: 334 LAKGYVRAGEPEKAESILTSMRKYGV------HPNVVICTTVISGWCSAGKMEHAMKVYE 387
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ TY+ L+ GY A K + ++ M+
Sbjct: 388 KMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVME 425
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 7/206 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I ++G K N+ A M+ G+ P+ VFNSLI L D + +
Sbjct: 222 NERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFL---DTMDTEGVD 278
Query: 167 EIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E++ EE +P+ T+ ++ +SS G +D + + + A ++ + L G
Sbjct: 279 EVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGY 338
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A + + + M G+ P++ I V+ G C+ K++ + + G N
Sbjct: 339 VRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNL 398
Query: 285 NMAQKLVKCYCELGRVDELEEQLETL 310
+ L+ Y E + + EE L+ +
Sbjct: 399 KTYETLIWGYGEAKQPLKAEELLQVM 424
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 1/176 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
V T ME G++PD F++++ A +G + +F MV +E +P+ + G
Sbjct: 279 EVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAE-IEPDIHAFSILAKG 337
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G + + G NV ++I G A + + YE+M +G+ P+
Sbjct: 338 YVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPN 397
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ E ++ G ++ + + L+ + G + Q + + +G + E E
Sbjct: 398 LKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIGLLSESE 453
>gi|20466534|gb|AAM20584.1| unknown protein [Arabidopsis thaliana]
gi|22136460|gb|AAM91308.1| unknown protein [Arabidopsis thaliana]
Length = 367
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 149/318 (46%), Gaps = 16/318 (5%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
DEYA I +SG+++NV A+ +F + ++V+N+L+ A LC+G LF
Sbjct: 4 DEYAKGITISGRLKNVDLALSLFH----ESANKTTSVYNALMGAYLCNGLSHHCEQLFLD 59
Query: 169 MVSSEE----YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
S ++ P+ TY+ IS + L V+ M + + TY +LI G
Sbjct: 60 FNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNILPDSSTYNNLIAGY 119
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ A D+D ++ + M + + P++ +L G L R++ + + +
Sbjct: 120 IYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRNEI 179
Query: 285 NMAQKLVKCY---CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ + ++ Y C R+ +++ + + K + P + L ++++YA D L +E
Sbjct: 180 KLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYL----LLMQVYAKDDNLHAME 235
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAG 400
+ + +GL ++ + ++ SYFRC A D+L F+ + +K+ R+ + L+
Sbjct: 236 NFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFHGLMIM 295
Query: 401 YRRAGLSGKLDSVINEMK 418
Y ++++V++EM+
Sbjct: 296 YGSQKRFKEMENVLSEME 313
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 7/245 (2%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ VL+ +D+ + N + + SG+ A+ + M G +P+ +N
Sbjct: 174 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE---AVRILKEMSRDGQRPNVVTYN 230
Query: 148 SLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI CLC SG A +F M+ S KP++ TY + + G+++ GN+ MN +
Sbjct: 231 MLI-DCLCKSGFHAEAREIFNSMIQSGP-KPDATTYGSLLHGYATEGNLVEMNNVKDLMV 288
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G N T+ I+ K D + +M LG +P I V++GLC +LD
Sbjct: 289 QNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLD 348
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
S ++ G N L+ + G+ ++ EE + P+V + F +
Sbjct: 349 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTI-FTAM 407
Query: 327 IIRLY 331
I RL+
Sbjct: 408 IDRLF 412
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 34/218 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE------------- 173
A +F SM G KPD+ + SL+ G++V ++ ++MV +
Sbjct: 245 AREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIY 304
Query: 174 ---------------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ P+ TY I G +G +D + I G S
Sbjct: 305 AYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 364
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N+ T+ +LIHG ++ + + EMM GI P + I +++ L K+ +
Sbjct: 365 NIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLF 424
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ G K N ++ Y G V E+ + L+ +
Sbjct: 425 DLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 462
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +GI PD +F ++I G V A LF++M + KPN +Y+ I
Sbjct: 385 AEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGA-KPNVVSYNTMI 443
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G V + K + G T+ +L+ G M+S+G+
Sbjct: 444 HGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----------------MVSMGLK 487
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK---INENM 286
P + + +++ C +++ + + + +LG K I EN+
Sbjct: 488 PDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 103/278 (37%), Gaps = 5/278 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISG 188
V M G PD +++L+ A L +M + P+ +Y I G
Sbjct: 71 VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG 130
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G+V + + G NV T S+I G K + D + ++M+ I+P+
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPN 190
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ G + + LK + G + N L+ C C+ G E E
Sbjct: 191 CTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFN 250
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++ + P+ + ++ YA L ++ M + G+ + + I +Y
Sbjct: 251 SMIQSGPKPDATT--YGSLLHGYATEGNLVEMNNVKDLMVQNGMR-SNHHTFSIEIYAYC 307
Query: 369 RCAAYDRLDL-FLDHIKGSYKLRRATYDFLVAGYRRAG 405
+C D L F+ + + TY ++ G + G
Sbjct: 308 KCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIG 345
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 17/184 (9%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ + AM F M G+ P+ F +LI G A LF M+ P+
Sbjct: 343 KIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD-RGIPPDV 401
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I G V K + AG NV +Y ++IHG A + V + ++
Sbjct: 402 TIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDD 461
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ +G+ P+ +L+G+ + G K + + + L+ CE GR
Sbjct: 462 MLLIGLKPTAVTFNTLLDGMVSM----------------GLKPDVDTCKTLIDSCCEDGR 505
Query: 300 VDEL 303
++++
Sbjct: 506 IEDI 509
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 112/260 (43%), Gaps = 7/260 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIALSGKVQ 122
+ ++ L+ L S KA+++ +L D++ K G L Y +I K+
Sbjct: 135 LGLQPTHVTFGTLLNGLCS----KAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIG 190
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ + ME +G KPD +N++I + A+ F MV + PN TY
Sbjct: 191 HTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD-QGIPPNVVTY 249
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + GF +LG ++ + I N T+ L+ G K R +E M
Sbjct: 250 SSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTE 309
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P +++G C + ++D + ++G G+ + + L+ +C+ R++E
Sbjct: 310 NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNE 369
Query: 303 LEEQLETLTKCNQSPEVLLH 322
+ L + + +P+ + +
Sbjct: 370 AKTLLSEMYDRDLTPDTVTY 389
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + + P++ F L+ G ++ A +FE+M + +P++ TY A +
Sbjct: 265 ATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM-TENGVEPDAYTYSALM 323
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ +D K + + GF+ +V+ Y LI+G K+R + EM +
Sbjct: 324 DGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLT 383
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P +++G C + + K + G + L+ C+ G +DE
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443
Query: 307 LETLTKCNQSPEVLLH 322
L+ + + P + ++
Sbjct: 444 LKAMQESKIEPHICIY 459
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 1/155 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G P V+N LI S + A +L M + P++ TY +
Sbjct: 335 AQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD-RDLTPDTVTYSTLM 393
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G K + + G + TY L+ G K D R + M I
Sbjct: 394 QGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIE 453
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
P I I +++G+C KL+ + L G +
Sbjct: 454 PHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQ 488
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 5/190 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGD---VVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M+ I+P+ LI CLC + V A S M +P T+ ++G
Sbjct: 95 MDLSNIRPNVYTLTILI-NCLCHSNRDHVHFAFSALGKMFKLG-LQPTHVTFGTLLNGLC 152
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
S + K + GF+ ++ TY ++I G K + + ++M G P +
Sbjct: 153 SKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVV 212
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
V++ LC R+ + F ++ G N ++ +C LG+++E + +
Sbjct: 213 AYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQM 272
Query: 311 TKCNQSPEVL 320
N P +
Sbjct: 273 IGRNVMPNTV 282
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI K + + A + + M + + PD+ +++L+ +G
Sbjct: 345 KGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQV 404
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ M S P+S TY + G G++D + A + ++ Y LI
Sbjct: 405 AQKLFKEMCSYG-LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILI 463
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G ++ + + GI PS+ ++ GL
Sbjct: 464 QGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGL 501
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +M+ I+P ++N LI G + A LF + + +P+ TY I
Sbjct: 440 AFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFV-KGIQPSVVTYTVMI 498
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
SG G + + + + G N TY I G L+ D + R EEM+ G
Sbjct: 499 SGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRG 556
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 10/296 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M P + +NSLI +GD+ A+ L MV + P+ TY +
Sbjct: 274 AVDIFEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-DNCAPDVITYTTLM 329
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S F +G +D + + +A S +V T+ SL+ G + EE+ G
Sbjct: 330 SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCP 389
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I V++G C ++ + + + G+ N LV C GR D+ +
Sbjct: 390 PTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY 449
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L+ L + ++ I+ R DD M ++G +A +V
Sbjct: 450 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV--- 506
Query: 367 YFRCAAYDRL---DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
+ C A+ +L + IK + T D +V+ Y RAG+ K D + +E++
Sbjct: 507 FALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 109/298 (36%), Gaps = 52/298 (17%)
Query: 60 DSVDIFAFNS---SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YAC 113
D+VDIF S + ++++LI + + L L KM+ N C + Y
Sbjct: 273 DAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRL---LGKMVDDN--CAPDVITYTT 327
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L++ K+ + A +F M A + PD F SL+ G + AL L E ++
Sbjct: 328 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE-EITRR 386
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA------ 227
P TY+ + G+ V + A + GF N TY L+ G +A
Sbjct: 387 GCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 446
Query: 228 -----------------------------RD--FDSVDRFYEEMMSLGIIPSIPILEKVL 256
RD D +FYEEM+ G +P+ V+
Sbjct: 447 LQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 506
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLT 311
LC + + L+ ++ G +V YC G + DEL +L T
Sbjct: 507 FALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLYT 564
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAF 185
A+ V M + PD+ +++ LC GD V A L E M+ N+ TY A
Sbjct: 168 AVQVLQEMVSARHVPDNTTL-TVVVQSLCLGDRVDDARELVEEMLH-RGMAANAITYSAL 225
Query: 186 ISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSL 243
+ G +D + GF+ ++ TY ++I G KA R D+VD F E +
Sbjct: 226 VDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE----M 281
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA------QKLVKCYCEL 297
P+ ++ G C +D L G +++N A L+ +C++
Sbjct: 282 SCAPTAITYNSLIGGYCRAGDMDEAIRLL------GKMVDDNCAPDVITYTTLMSAFCKM 335
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
GR+D+ E + + SP+V+ F+ ++ R++D + + ++G +
Sbjct: 336 GRLDDAYELFQQMVANKLSPDVVT--FTSLVDGLCGEGRMEDALELLEEITRRGCP-PTI 392
Query: 358 EDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
V+ Y + + +L D + TY+ LVAG RAG
Sbjct: 393 YTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAG 441
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--------------------------- 169
+G+ PD N+++ + D TA++LF+ M
Sbjct: 40 RGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEA 99
Query: 170 ------VSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIH 222
+ S P + ++ I G G + A+ + N A + TY L+H
Sbjct: 100 MGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDA--HPPDFLTYTKLVH 157
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G KA + +EM+S +P L V++ LC ++D + ++ +L G
Sbjct: 158 GLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAA 217
Query: 283 NENMAQKLVKCYCELGRVDE-LEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
N LV C+ R+DE + L +T+ +P+++ + G+ + L D +D
Sbjct: 218 NAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 276
>gi|115443847|ref|NP_001045703.1| Os02g0119700 [Oryza sativa Japonica Group]
gi|41052618|dbj|BAD08127.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|41053255|dbj|BAD07623.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535234|dbj|BAF07617.1| Os02g0119700 [Oryza sativa Japonica Group]
gi|125580592|gb|EAZ21523.1| hypothetical protein OsJ_05149 [Oryza sativa Japonica Group]
gi|215766292|dbj|BAG98520.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 367
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 1/169 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+K D+ V+N+L+ A + D L + M + +P+ TY+ + G + G V
Sbjct: 168 HGVKADAPVYNALMKAHCAASDPAGVLGVLRRM-KDDGVEPDLVTYNTLVFGLARAGMVT 226
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A AAG +V TY SL++G D EEM + G P+ +L
Sbjct: 227 KARTYLDAMAAAGHFPDVITYTSLMNGMCVKGDAMGALALLEEMEAKGCEPNERTYNTLL 286
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
GLC +KLD+ K ++G K+ V+ C GR+ + E
Sbjct: 287 MGLCKNKKLDKAVDVYKSMVGAAMKLEAPAYATFVRALCRAGRIPDAYE 335
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E L Y L+ + V A +M A G PD + SL+ GD + A
Sbjct: 204 GVEPDLVTYNTLVFGLARAGMVTKARTYLDAMAAAGHFPDVITYTSLMNGMCVKGDAMGA 263
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+L E M ++ +PN +TY+ + G +D Y + + A + Y + +
Sbjct: 264 LALLEEM-EAKGCEPNERTYNTLLMGLCKNKKLDKAVDVYKSMVGAAMKLEAPAYATFVR 322
Query: 223 GSLKA 227
+A
Sbjct: 323 ALCRA 327
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 145/363 (39%), Gaps = 15/363 (4%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLD-KMLKGNESCLDEYACLIALS 118
D V F+ QFS+ LI L + L + ++D K++K N + Y +I
Sbjct: 162 DHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKIN---VVMYNTIIDSL 218
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V A +++ M A+ I PD F++LI G + A LF MV + P+
Sbjct: 219 CKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL-KNINPD 277
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ + GN+ + G NV TY SL+ G +
Sbjct: 278 YYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLN 337
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ +G P+ ++ G C + +D S + G ++ L+ C+ G
Sbjct: 338 TISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ E ++ + Q + ++ +I + +D V ++ QG+ +
Sbjct: 398 RISYAWELVDEMHDNGQPANIFT--YNCLIDALCKNHHVDQAIALVKKIKDQGI---QPD 452
Query: 359 DVEMVICSYFRCAAYDRL----DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
I Y C RL D+F D + Y + TY+ +V G + GL + ++++
Sbjct: 453 MYTFNILIYGLCKV-GRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALL 511
Query: 415 NEM 417
++M
Sbjct: 512 SKM 514
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 21/241 (8%)
Query: 67 FNSSQF--------SWDALITSLQSSSPKKAQLVLEWRL-DKML-KGNESCLDEYACLIA 116
FN QF ++++LI L K ++ W L D+M G + + Y CLI
Sbjct: 371 FNDMQFKGIAPDKVTYNSLIDGL----CKSGRISYAWELVDEMHDNGQPANIFTYNCLID 426
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K +V A+ + ++ QGI+PD FN LI G + A +F+ ++S + Y
Sbjct: 427 ALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLS-KGYS 485
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
N+ TY+ ++G G D + G + TYE+LI + + ++
Sbjct: 486 VNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKL 545
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM++ ++ ++ LE VL K KF G + I N+ Q L+ +
Sbjct: 546 LREMIARDVVYALEGLEMVL------HLESEAKDQEKFGKKGYYAITTNLGQGLISAVVQ 599
Query: 297 L 297
L
Sbjct: 600 L 600
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 4/203 (1%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+GKV+ A+H + A G D + +LI G+ TAL + + +
Sbjct: 148 LCLNGKVKE---ALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLR-KIDGKL 203
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K N Y+ I V + Y+ IA S +V T+ +LI+G +
Sbjct: 204 VKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAF 263
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ EM+ I P +++ LC L K+ L ++ G N L+ Y
Sbjct: 264 GLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGY 323
Query: 295 CELGRVDELEEQLETLTKCNQSP 317
C + +V++ + L T+++ +P
Sbjct: 324 CLVNQVNKAKHVLNTISQMGAAP 346
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/393 (19%), Positives = 152/393 (38%), Gaps = 61/393 (15%)
Query: 65 FAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
F F S D +++S L + P + + L ++K N + Y I+LS +
Sbjct: 38 FQFVPSNIDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNN---NHYPTAISLSRR- 93
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSK 180
+E GI PD FN LI C C ++ A S+ ++ Y+P++
Sbjct: 94 ------------LEFHGITPDIFTFNILI-NCYCHMAEMNFAFSMMAKILKMG-YEPDTI 139
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA----------RDF 230
T++ I G G V ++ +A GF ++ +Y +LI+G K R
Sbjct: 140 TFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKI 199
Query: 231 DS-----------------------VDRF--YEEMMSLGIIPSIPILEKVLEGLCARRKL 265
D +D + Y +M++ I P + ++ G C +L
Sbjct: 200 DGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQL 259
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+ + ++ + LV C+ G + + L + K P V+ +S
Sbjct: 260 EEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVT--YS 317
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIK 384
++ Y L ++++ ++ + + + G + +A +I + + D L LF D
Sbjct: 318 SLMDGYCLVNQVNKAKHVLNTISQMGAA-PNAHSYCTMINGFCKIKMVDEALSLFNDMQF 376
Query: 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ TY+ L+ G ++G +++EM
Sbjct: 377 KGIAPDKVTYNSLIDGLCKSGRISYAWELVDEM 409
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ +L W ++ G + Y LI K + A+ +F M +G+ PD A +N
Sbjct: 167 KAKELLNWMWEQ---GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 223
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI GD++ A ++E ++ PN +Y+ I+G G D + +
Sbjct: 224 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 283
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
++ TY +LIHG + + D R Y+EM G+ P + + +L G + R
Sbjct: 284 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL---RAGR 340
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCY 294
++ L+ WK+ E + V Y
Sbjct: 341 IEECLEL-----WKVMEKEGCRTVVSY 362
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 3/226 (1%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
++L + C D + + G +N + A+ + E D+ ++S+I
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + + M + KPN +A I+GF ++ +++ ++ G V T
Sbjct: 443 GRLDEVAGVLDQM-TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI+G KA F +EM+ G P++ ++ GLC +KLD + L
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G+K + M ++ C G+V++ + + + P ++ H
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y LI K + A + M +G KP+ + SL+ LC G + AL+L+
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY-SLLMNGLCQGKKLDMALNLW-CQ 559
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +KP+ K ++ I G S G V+ + Y+ N+ T+ +L+ G K RD
Sbjct: 560 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
F+ + ++ ++ G P I L+GLC+ ++ FL
Sbjct: 620 FERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFL 662
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI +S + + A + M QG PD + +LI + +G + AL LF+
Sbjct: 149 LQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFD 208
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M P+ Y+ I GF G++ +A W N+ +Y +I+G K
Sbjct: 209 EM-PERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
FD + M + ++ GLC LD K + G + +
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327
Query: 287 AQKLVKCYCELGRVDELEEQLETLTK 312
++ Y GR++E E + + K
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEK 353
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 8/187 (4%)
Query: 97 LDKMLKGNESC-LDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
LD+M K C + + C ++G V+ + A+ F +M ++G P +N+LI
Sbjct: 452 LDQMTK--HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGL 509
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSV 212
+ A +L + M+ + +KPN TY ++G +D A+N W A + GF
Sbjct: 510 SKAERFSEAYALVKEMLH-KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA-LEKGFKP 567
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V+ + +IHG + + + Y EM +P++ ++EG R +R
Sbjct: 568 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627
Query: 273 KFLLGGG 279
+L G
Sbjct: 628 DHILQYG 634
>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M + GI PD+A + L+ G+V A+ L E M S Y N+ TY+ +
Sbjct: 116 AIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSG-YPANTVTYNTLV 174
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G GN++ ++ + G N TY SL+ + K R + R +E+++ G
Sbjct: 175 KGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQ 234
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +L GLC +++ K L G+ N L++ C GR +E E
Sbjct: 235 PNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANEL 294
Query: 307 LETLTKCNQSPEVLLH 322
L + +SP ++ +
Sbjct: 295 LAEMNGRERSPSIVTY 310
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 88/195 (45%), Gaps = 5/195 (2%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + + ++ +++A+ ++A +++
Sbjct: 341 TATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQ 400
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+K N S D Y +++ K N A + M G PDS ++SLI
Sbjct: 401 SLGNKQ---NSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLC 457
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + A+ +F+++ + Y+P+ ++A I GF D + + I G++ +
Sbjct: 458 IEGMLYEAMEIFKLL-EEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSE 516
Query: 215 QTYESLIHGSLKARD 229
TY L+ G + +
Sbjct: 517 TTYTILVEGIIHEEE 531
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 6/219 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ + K + V AM + + A+G +P+ +N L+ G + A+ LF+ +
Sbjct: 205 YSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNL- 263
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-D 229
S+ + PN +Y+ + G + N+ A S ++ TY LI GSL
Sbjct: 264 PSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILI-GSLAFHGK 322
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + +EMM P+ ++ LC K++ V + L ++ G NE
Sbjct: 323 IEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNA 382
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ C G+V E +++L N+ + ++ G++
Sbjct: 383 -IAVLCYEGKVQEAFSLIQSLG--NKQNSSIHDYYKGVV 418
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ P++ ++SL+ A V A+ L + +++ +PN +Y+ ++G G ++
Sbjct: 196 KGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGG-QPNLVSYNVLLTGLCKEGRIE 254
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + GFS NV +Y L+ ++ + EM PSI ++
Sbjct: 255 EAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILI 314
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
L K+++ + ++ G +K ++ C+ G+V+ + L+ + S
Sbjct: 315 GSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCS 374
Query: 317 P 317
P
Sbjct: 375 P 375
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 1/223 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
+ +G L Y LI + GK A+ V ++E QGI P+ +N++I AC SG
Sbjct: 257 LAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQA 316
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL ++E M+++ +P + TY A IS + G +D + + + G NV TY S
Sbjct: 317 QEALRIYERMLAAGA-QPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSS 375
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI KA ++ + EM + G P++ ++ + ++ + + + G
Sbjct: 376 LISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRG 435
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K + L+ Y G E + N P+ +++
Sbjct: 436 CKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVY 478
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 5/265 (1%)
Query: 75 DALITSLQSSSPKKAQLVLEWR-LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+A+ T++ S K LV R D+M KG + Y LI + + A V
Sbjct: 364 EAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQ 423
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M A+ + D + L+ G + A + MV PN TY A G
Sbjct: 424 EMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQ-RGVAPNVVTYTALSDGLCKQ 482
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G+V A N+ G +N TY SLI+G KA D R +M + G+ P +
Sbjct: 483 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTY 542
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ LC +LDR L+ +L G K L+ +C GRV+ ++ LE + +
Sbjct: 543 TTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE 602
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRL 337
N P ++ +++ Y + + +
Sbjct: 603 KNIHPNATT--YNSLMKQYCIGNNM 625
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M+A G+KPD + +LI A SG++ A L + M+ + KP TY+ +
Sbjct: 523 AMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG-IKPTIVTYNVLM 581
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G V+ K + N TY SL+ + S Y+ M S +
Sbjct: 582 NGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE 641
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
P+ +++G C R + + F ++ G+++ + L++
Sbjct: 642 PNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIR 687
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 127/289 (43%), Gaps = 10/289 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKP 177
G+++N A+ + M A+G++P++ V+ S++ A LC G V AL++ E MV +
Sbjct: 308 GELEN---AVKLLDDMVARGVEPNATVYTSVV-ALLCDKGRVSDALTVVEDMVHHKVIL- 362
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y +SGF + G++ + +W+ G + + TY +LI+G +A + ++
Sbjct: 363 DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVL 422
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM++ + +++G C R K+ ++ G N L C+
Sbjct: 423 QEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ 482
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G V E L ++ N+ E+ ++ +I + LD ++ M GL
Sbjct: 483 GDVQAANELLHEMS--NKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLK-PDV 539
Query: 358 EDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+I + + DR DL + + K TY+ L+ G+ +G
Sbjct: 540 YTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSG 588
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 4/243 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD M+ +G E Y ++AL V A+ V M + D AV+ +++
Sbjct: 317 LDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCN 376
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GD+V+A F+ M + + TY I+G G + K +A V+
Sbjct: 377 KGDLVSARRWFDEM-QRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEV 435
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY L+ G K + + M+ G+ P++ + +GLC + + L +
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEM 495
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
G ++N L+ C+ G +D+ + + P+V + ++ +I S
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDV--YTYTTLIDALCKSG 553
Query: 336 RLD 338
LD
Sbjct: 554 ELD 556
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 42/221 (19%)
Query: 137 QGIKPDSAV--FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
QG+ PD V +N L+ +G V A LF+ M S P+ TY I G+ +LG
Sbjct: 255 QGL-PDKNVCSYNILLKVLCGAGRVEDARQLFDEMASP----PDVVTYGILIHGYCALGE 309
Query: 195 VDAMNKWYAANIAAGFSVNVQTY--------------------ESLIH------------ 222
++ K +A G N Y E ++H
Sbjct: 310 LENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTT 369
Query: 223 ---GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
G D S R+++EM G+ ++ GLC +L + L+ +L
Sbjct: 370 VLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR 429
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
++E LV YC+ G++ E + T+ + +P V+
Sbjct: 430 LDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVV 470
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 13/245 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V A + M +G++ ++ +NSLI +G + A+ M + KP+
Sbjct: 481 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADM-DAAGLKPDV 539
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I G +D + + G + TY L++G + + + E
Sbjct: 540 YTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEW 599
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ I P+ +++ C + K + + NEN L+K +C+
Sbjct: 600 MLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARS 659
Query: 300 VDELE----EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+ E + E +E + S +S +IRL + + M K+G F
Sbjct: 660 MKEAQYFHNEMIEKGFRLTASS------YSALIRLLNKKKKFVEARKLFHDMRKEG--FT 711
Query: 356 SAEDV 360
+ DV
Sbjct: 712 AEPDV 716
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ +L W ++ G + Y LI K + A+ +F M +G+ PD A +N
Sbjct: 167 KAKELLNWMWEQ---GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 223
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI GD++ A ++E ++ PN +Y+ I+G G D + +
Sbjct: 224 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 283
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
++ TY +LIHG + + D R Y+EM G+ P + + +L G + R
Sbjct: 284 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL---RAGR 340
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCY 294
++ L+ WK+ E + V Y
Sbjct: 341 IEECLEL-----WKVMEKEGCRTVVSY 362
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 3/226 (1%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
++L + C D + + G +N + A+ + E D+ ++S+I
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + + M + KPN +A I+GF ++ +++ ++ G V T
Sbjct: 443 GRLDEVAGVLDQM-TKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI+G KA F +EM+ G P++ ++ GLC +KLD + L
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G+K + M ++ C G+V++ + + + P ++ H
Sbjct: 562 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI +S + + A + M QG PD + +LI + +G + AL LF+
Sbjct: 149 LQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFD 208
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M P+ Y+ I GF G++ +A W N+ +Y +I+G K
Sbjct: 209 EM-PERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 267
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
FD + M + ++ GLC LD K + G + +
Sbjct: 268 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 327
Query: 287 AQKLVKCYCELGRVDELEEQLETLTK 312
++ Y GR++E E + + K
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEK 353
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 97 LDKMLKGNESC-LDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
LD+M K C + + C ++G V+ + A+ F +M ++G P +N+LI
Sbjct: 452 LDQMTK--HGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGL 509
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSV 212
+ A +L + M+ + +KPN TY ++G +D A+N W A + GF
Sbjct: 510 SKAERFSEAYALVKEMLH-KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA-LEKGFKP 567
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V+ + +IHG + + + Y EM +P++ ++EG R +R
Sbjct: 568 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627
Query: 273 KFLL 276
+L
Sbjct: 628 DHIL 631
>gi|125572292|gb|EAZ13807.1| hypothetical protein OsJ_03733 [Oryza sativa Japonica Group]
Length = 351
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+ F S P + N+L+ ACL SG+ A +F+ + KPN+ T++
Sbjct: 81 LPDAVSTFKS------SPSTRSLNALLFACLVSGNHAEAARVFQTFPDAYSVKPNTDTFN 134
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I F+ G + G N T+ + I G K FD V + E M
Sbjct: 135 AIIKSFAESGTTRSFYSVLDEMCQKGVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKH 194
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G S+P+ ++GLC + K+ L ++ G K + L+ +C+ G ++E
Sbjct: 195 GCGESLPVFNVRVQGLCKLGRSGDAKALLNEMVKKGTKPSWLTYNHLIHGFCKEGDLEEA 254
Query: 304 EEQLETLTK 312
+ + + K
Sbjct: 255 KRLYKEMAK 263
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 42/236 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+ACL++ N A VF + +A +KP++ FN++I + SG + S+ + M
Sbjct: 102 FACLVS-----GNHAEAARVFQTFPDAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEM 156
Query: 170 VSSEEYKPNSKTYDAFISGF------SSLGNV-DAMNKWYAANIAAGFSVNVQ------- 215
+ KPN+ T+ I+GF +G V + M K F+V VQ
Sbjct: 157 CQ-KGVKPNATTFTTAIAGFYKEERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGR 215
Query: 216 ---------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
TY LIHG K D + R Y+EM G++
Sbjct: 216 SGDAKALLNEMVKKGTKPSWLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYM 275
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC D + W + + LV RVDE + +E +
Sbjct: 276 LIYYLCKGGDFDTAVGVYNEIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKM 331
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 17/233 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
D ++ + +++A+I S +S + + VL+ K +K N + + IA K
Sbjct: 122 DAYSVKPNTDTFNAIIKSFAESGTTRSFYSVLDEMCQKGVKPNATT---FTTAIAGFYKE 178
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPN 178
+ V M+ G VFN + C SGD A +L MV + KP+
Sbjct: 179 ERFDDVGKVIELMKKHGCGESLPVFNVRVQGLCKLGRSGD---AKALLNEMVK-KGTKPS 234
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GF G+++ + Y G + Y LI+ K DFD+ Y
Sbjct: 235 WLTYNHLIHGFCKEGDLEEAKRLYKEMAKKGLVGDSSFYYMLIYYLCKGGDFDTAVGVYN 294
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL------LGGGWKINEN 285
E+ + +P ++ ++ GL ++D K ++ + GWK E+
Sbjct: 295 EIAARNWVPCFSTMKMLVNGLAGSSRVDEAKGIIEKMKEKFPDKAEGWKEVED 347
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+M++ G + Y LI K ++ A +F M +G++P + F SLI
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V A L+ M+ + PN T+ A ISG S + ++ + +
Sbjct: 483 DLQVQKAFKLYNKMIDNG-ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEV 541
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LI G + D E+M G++P ++ GLC+ ++ + K F+ L
Sbjct: 542 TYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
K+NE L+ YC+ GR+ E
Sbjct: 602 HKQNVKLNEMCYSALLHGYCQEGRLME 628
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 9/271 (3%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G P+ V+N+LI + GD+ A L+ M S +PN TY I F G +D
Sbjct: 360 GFVPNLFVYNALINSLCKGGDLDKAELLYSNM-SLMNLRPNGITYSILIDSFCRSGRLDV 418
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ I G V Y SLI+G K D + + + EM + G+ P+ ++
Sbjct: 419 AISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLIS 478
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C ++ + ++ G N L+ C ++ E E + L + P
Sbjct: 479 GYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKP 538
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCA-AYD 374
+ ++ +I Y ++D + M ++GL + ++ +CS R + A D
Sbjct: 539 TEVT--YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKD 596
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+D D K + KL Y L+ GY + G
Sbjct: 597 FID---DLHKQNVKLNEMCYSALLHGYCQEG 624
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 7/309 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ V S+ +G+ D + +L+ + L + MV
Sbjct: 263 YNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMV 322
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P + G G +D + GF N+ Y +LI+ K D
Sbjct: 323 ELG-FSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + Y M + + P+ +++ C +LD S+ ++ G L
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSL 441
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ G + E +T N+ E F+ +I Y ++ +M
Sbjct: 442 INGQCKFGDLSAAESLFIEMT--NKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDN 499
Query: 351 GLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
G++ ++ +CS + A + +LF + ++ K TY+ L+ GY R G
Sbjct: 500 GITPNVYTFTALISGLCSTNKMA--EASELFDELVERKIKPTEVTYNVLIEGYCRDGKID 557
Query: 409 KLDSVINEM 417
K ++ +M
Sbjct: 558 KAFELLEDM 566
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 2/187 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG++PD+ ++ S+I G A +++MV +EE PN TY A ++G G
Sbjct: 671 MHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMV-TEECFPNVVTYTALMNGLCKAG 729
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + AA N TY + K + + M+ G++ +
Sbjct: 730 EMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHN 788
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G C + L + G + L+ YC G V + +T+
Sbjct: 789 IIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNR 848
Query: 314 NQSPEVL 320
P+++
Sbjct: 849 GLEPDLV 855
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M+A + P+S + + G++ A+ L M+ N+ T++ I GF
Sbjct: 737 LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKG--LLANTVTHNIIIRGF 794
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
LG K + G + TY +LI+ ++ + + + ++ M++ G+ P +
Sbjct: 795 CKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDL 854
Query: 250 PILEKVLEGLCARRKLDR 267
++ G C +LD+
Sbjct: 855 VAYNLLIYGCCVNGELDK 872
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 2/173 (1%)
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I G V + + G + +V TY +L+ G + + F++ + +EM
Sbjct: 262 TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ LG P+ + +++GL + K+D + + G+ N + L+ C+ G +
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
D+ E ++ N P + +S +I + S RLD RM + G+
Sbjct: 382 DKAELLYSNMSLMNLRPNGIT--YSILIDSFCRSGRLDVAISYFDRMIQDGIG 432
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 2/144 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C + K N+ A+ + +M +G+ ++ N +I G A + M
Sbjct: 753 YGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMT 811
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY I + GNV A K + + G ++ Y LI+G +
Sbjct: 812 ENGIF-PDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGEL 870
Query: 231 DSVDRFYEEMMSLGIIPSIPILEK 254
D ++M+ GIIP L+K
Sbjct: 871 DKAFELRDDMLRRGIIPDNKYLQK 894
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 140/323 (43%), Gaps = 6/323 (1%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+ML+ G + L Y LI L G P M VF + + G PD +N+L+ +
Sbjct: 378 DEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQN 437
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G +F+ M S Y P TY + IS +S G D + Y I AG ++ T
Sbjct: 438 GLDSEVSGVFKEMKKSG-YVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIST 496
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +++ + ++ ++ + EM +L P +L +KLD++K+ + +
Sbjct: 497 YNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIY 556
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
+ + + + LV ++ + E E+ L + S ++ + + ++ +Y +
Sbjct: 557 AEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDI--NVLNAMVSVYGKNRM 614
Query: 337 LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYD 395
+ VE + M ++ +A ++ Y R ++ + L IK S + R +Y+
Sbjct: 615 VKKVEEILSLMKGSSINLSTAT-YNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYN 673
Query: 396 FLVAGYRRAGLSGKLDSVINEMK 418
++ Y R G + + +EMK
Sbjct: 674 TMIYAYGRKGQMKEASRLFSEMK 696
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 146/349 (41%), Gaps = 10/349 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF--AMHV 130
++ AL+++ +S + + + R+ + G + + Y ++ + K+ VP+ + +
Sbjct: 180 AYTALVSAFSRASRFRDAVAVFRRM--VANGIQPAIVTYNVVLHVYSKIA-VPWKDVVAL 236
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
SM+ GI D +N+LI C A +F+ M ++ ++P+ T+++ + +
Sbjct: 237 VDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAG-FEPDKVTFNSLLDVYG 295
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
D G +V TY SLI +K EEM GI P +
Sbjct: 296 KARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVI 355
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ GL K+D +L G K N L+K + G+ E+ + L
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDL 415
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P+V+ ++ ++ ++ + +V M K G + V + I SY RC
Sbjct: 416 RSAGFVPDVVT--WNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSL-ISSYSRC 472
Query: 371 AAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+D+ ++++ I+ +TY+ +++ R G + + + EM+
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEME 521
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/202 (18%), Positives = 84/202 (41%), Gaps = 1/202 (0%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ ++ KV N+ F + + D V N+++ + V + +M S
Sbjct: 569 TLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGS 628
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
++ TY++ + +S LG+ + ++G + +Y ++I+ +
Sbjct: 629 S-INLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKE 687
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
R + EM S G+IP I ++ A + +++++ G K NE +++
Sbjct: 688 ASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 747
Query: 293 CYCELGRVDELEEQLETLTKCN 314
YC G++ + + L L + +
Sbjct: 748 EYCRHGKIADAKSFLSNLPQLH 769
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 16/304 (5%)
Query: 56 KTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115
+ LD++ + S++ LI + S A + L+ + G + Y LI
Sbjct: 241 RQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLI 300
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+ + N+ A+ VF M A +PD +N+++ G A LF +V + +
Sbjct: 301 SACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVE-KGF 359
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P++ TY++ + F+ GNVD + + AGF N TY ++IH K D
Sbjct: 360 MPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
Y+EM ++G P +++ L K+ L+ + G K L+ Y
Sbjct: 420 LYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYA 479
Query: 296 ELGRVDELEEQLETLTKCNQSPE-----VLLHFFS------GIIRLY--ALSD--RLDDV 340
+ GR + E+ + + P+ V+L F+ ++RLY ++D R DD
Sbjct: 480 KGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDD 539
Query: 341 EYSV 344
Y V
Sbjct: 540 MYQV 543
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-----CLCSGDVVTALSLFEIMV 170
A SG+ + A + +M +GI PD FN+LI A CL +G V LFE+
Sbjct: 232 ARSGRFDD---ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG--VALDLLFEVRQ 286
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ TY+ IS S N++ + IA+ ++ TY +++ +
Sbjct: 287 SG--LRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKA 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +R + E++ G +P +L +D+V+ + L+ G+K NE +
Sbjct: 345 EEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTM 404
Query: 291 VKCYCELGRVD 301
+ Y ++GR+D
Sbjct: 405 IHMYGKMGRLD 415
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 40/293 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF +M G P N ++ A + G + L + + ++K + T +
Sbjct: 799 ARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRL-DELYVVVGELQDMDFKISKSTVLLML 857
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F+ G+V + K Y AAG+ N+ Y S+ F V+ EM G
Sbjct: 858 DAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFK 917
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + I +L A DR + +L G + +E+ L+ YC R +
Sbjct: 918 PDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPE----- 972
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E T N+ MGK+GL+ K + + ++ +
Sbjct: 973 -EGFTLLNE-------------------------------MGKRGLTPK-LQSYKSLLAA 999
Query: 367 YFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ ++ D + ++ SY+L R+ Y ++ YR AG K ++++ MK
Sbjct: 1000 SAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMK 1052
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK+ + A+ ++ M A G PD+ + +I + + A + E M
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMA 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP + A I ++ G K + IA+G + Y ++ ++ +
Sbjct: 461 DAG-LKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGET 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ + R Y MM+ P + + +L L K + ++ ++
Sbjct: 520 EKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQ 562
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 124/312 (39%), Gaps = 45/312 (14%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ GI+ ++ S+I G TA L + DA
Sbjct: 694 ACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMD---------------DALQ 738
Query: 187 SGF------------SSLGNVDAMNKWYAANI-------AAGFSVNVQTYESLIHGSLKA 227
SG + GN+ W A I A+G ++ + + +LIH ++
Sbjct: 739 SGIPLNILSCRVIIIEAYGNI---KLWQQAEILVKGLRQASG--IDRRIWNALIHAYAES 793
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
++ ++ M+ G +P++ + ++ L +LD + + L +KI+++
Sbjct: 794 GLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTV 853
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++ + + G V E+ + + P +H + + L +R DVE + M
Sbjct: 854 LLMLDAFAKAGDVFEVMKIYNGMKAAGYLPN--MHLYRSMTSLLCHHNRFRDVELMIAEM 911
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAA-YDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+G FK + + + + A +DR ++ ++ + TY+ L+ Y R+
Sbjct: 912 --EGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSL 969
Query: 406 LSGKLDSVINEM 417
+ +++NEM
Sbjct: 970 RPEEGFTLLNEM 981
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 143/342 (41%), Gaps = 15/342 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P++AQ + +++ G+ Y L+A + + + + ME GIK
Sbjct: 68 VERGKPQEAQFIFNSLVEQ---GHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIK 124
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMN 199
PDS + N++I A SG+V A+ +F+ M S KP + T++ I G+ + ++M
Sbjct: 125 PDSILLNAIINAFSESGNVKEAMEIFQKMEES-GCKPTTSTFNTLIKGYGIIRKPEESMK 183
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
N +TY L+ K + +M++ G+ P + +
Sbjct: 184 LLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAY 243
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ ++ +S + +L NE +V YCE G + E + + P +
Sbjct: 244 AQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNL 303
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRL 376
++ F+ +I+ + D V+ ++ M + G+ DV ++ + D+
Sbjct: 304 VI--FNSLIKGFLDIGDSDGVDKALTMMEESGVK----PDVITFSTIMNGWSSAGRMDKC 357
Query: 377 -DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++F D +K + + L G+ RAG K +S++N M
Sbjct: 358 QEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFM 399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 5/229 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K +++ A +V M A G++PD +N+L A G+ A S+ M+
Sbjct: 201 YNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDML 260
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++ PN +T + G+ GN+ +A+ Y G N+ + SLI G L D
Sbjct: 261 N-KKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMR-DLGIHPNLVIFNSLIKGFLDIGD 318
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D VD+ M G+ P + ++ G + ++D+ + +L G + + ++
Sbjct: 319 SDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSI 378
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
L K + G + E L ++K P V++ F+ II + + +++
Sbjct: 379 LAKGFVRAGEPVKAESLLNFMSKYGVRPNVVI--FTTIISGWCTAGKME 425
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 14/242 (5%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGI 139
Q KA+ ++ L+K + NE C I + G + N+ A+ V M GI
Sbjct: 245 QDGETNKAESIIVDMLNKKVNPNER-----TCGIIVGGYCEQGNLAEALRVVYRMRDLGI 299
Query: 140 KPDSAVFNSLICACLCSGD---VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
P+ +FNSLI L GD V AL++ E KP+ T+ ++G+SS G +D
Sbjct: 300 HPNLVIFNSLIKGFLDIGDSDGVDKALTMME----ESGVKPDVITFSTIMNGWSSAGRMD 355
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + + +G ++ + L G ++A + + M G+ P++ I ++
Sbjct: 356 KCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTII 415
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C K+++ + + N + L+ Y E + EE L+ + + N
Sbjct: 416 SGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVV 475
Query: 317 PE 318
PE
Sbjct: 476 PE 477
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M GI+PD VF+ L + +G+ V A SL M S +PN + ISG
Sbjct: 359 EIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFM-SKYGVRPNVVIFTTIISG 417
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ + G ++ K + S N++T+E+LI G +A+ + + M + ++P
Sbjct: 418 WCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPE 477
Query: 249 IPILEKVLE 257
L+ V E
Sbjct: 478 NSTLKLVSE 486
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 1/177 (0%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + + +G++PD A +NSLI G++ AL + +M+ + PN Y++F
Sbjct: 579 LALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLK-DGLLPNISVYNSF 637
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G+ +L ++ + Y I G ++ TY +LI G K + + Y EM++ G
Sbjct: 638 ITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGN 697
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
IP + GLC +D + L + + N M L+ Y G++ E
Sbjct: 698 IPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQE 754
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 15/237 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----VSSEEYKPNSKTY 182
A+ ++T M +G P+ + +L+ + A +L M VS +Y TY
Sbjct: 440 AVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDY-----TY 494
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G +G V + + GF TY S+I+G +KA S Y++M +
Sbjct: 495 NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCA 554
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P+I ++G C D L + G + + L+ +C+ G +
Sbjct: 555 KGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSH 614
Query: 303 LEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
+ L + K P + ++ F +G L + + L E +M K+G+ +A
Sbjct: 615 ALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYE----KMIKEGIDLDTA 667
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G+ P + FN +I L A+SLF+ M S P++ TY+ I
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG--IPDAFTYNILIHWLCQRR 400
Query: 194 NV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ +A+N W N G + TY SL+ D + Y EM G P++
Sbjct: 401 KIREALNLWEKMN-ETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTY 459
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+++G + D+ + L + G N+ L+ C +GRV E+ E L+
Sbjct: 460 TTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLK 515
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 10/185 (5%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
DI A+NS F + Q + A VL L L N S Y I ++
Sbjct: 595 DIAAYNSLIFGF------CQEGNMSHALQVLVLMLKDGLLPNISV---YNSFITGYKNLK 645
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ ++ M +GI D+A + +LI G+V AL L+ MV+ P+ T+
Sbjct: 646 MMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNI-PDHITF 704
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A G G++D K NV Y LI+G L+ R ++EM+
Sbjct: 705 TALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE 764
Query: 243 LGIIP 247
I+P
Sbjct: 765 RKIMP 769
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M GI PD+ +N LI + AL+L+E M + KP TY + +
Sbjct: 371 AVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKM-NETGVKPYIVTYHSLL 428
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G +D K Y GF+ NV TY +L+ G + FD EM G+
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVS 488
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLK 273
+ ++ GLC ++ V LK
Sbjct: 489 CNDYTYNTLINGLCVVGRVCEVGEMLK 515
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV FA+ +++ M A+G PD F +L +GD+ A L + M
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEM- 727
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ + +PN Y+ I+G+ G + + + + + TY+ L+
Sbjct: 728 NRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 113/294 (38%), Gaps = 10/294 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+H+ + A G K + +L+ +V AL +FE + + P TY I
Sbjct: 266 ALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLR-DGLVPTDVTYTVLI 324
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G + + G + + +I G L + + ++EM GI
Sbjct: 325 RGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI- 383
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P ++ LC RRK+ + + + G K L+ CYC G +DE +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--I 364
+ +P V+ ++ +++ + D + M + G+S ++ +
Sbjct: 444 YTEMPGKGFTPNVVT--YTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGL 501
Query: 365 CSYFR-CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
C R C + L F + TY+ ++ G+ +AG+ G +V +M
Sbjct: 502 CVVGRVCEVGEMLKRFETE---GFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552
>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
Length = 483
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G++PD FN+LI G + A +F M + + PN+ TY+ I+G+S +G
Sbjct: 242 MEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEM-KANDVVPNTITYNTLINGYSQVG 300
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N + + + + G ++ TY +LI G +E+ ++P+
Sbjct: 301 NSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFS 360
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G C R+ +R K ++ G N + + L+ +C+ D E + +++
Sbjct: 361 ALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSER 420
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ +P+ SD L ++ + GK+ L+ K +++EM
Sbjct: 421 SIAPD---------------SDTLSELCRGLWLSGKEELALKLCKEMEM 454
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V N + M GIK D +N+LI G A L + +
Sbjct: 289 YNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVK-EL 347
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I+G N + + Y + I +G N T++ LI K DF
Sbjct: 348 DRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDF 407
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EM I P L ++ GL
Sbjct: 408 DGAVEVVREMSERSIAPDSDTLSELCRGL 436
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+M+K G + + + + K+ N+P A +F M +G++PD + + I L
Sbjct: 401 DEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKL 460
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
GD A + E M++ + P+ TY+ FI G LGN+ ++ + G + T
Sbjct: 461 GDPSKAFGMQEEMLA-RGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVT 519
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI------------------------PIL 252
Y S+IH L A + EM+S GI PS+ +
Sbjct: 520 YTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMH 579
Query: 253 EK-----------VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
EK ++ GLC RK+D+ +F + G N+ L+ C LG
Sbjct: 580 EKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQ 639
Query: 302 E 302
E
Sbjct: 640 E 640
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L + N+ A V+ M GI P +N+++ + G V AL L + +
Sbjct: 176 LRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLL-FQMQAMGCS 234
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+ ++G S G ++ + + G V+V TY+ LI G + + R
Sbjct: 235 PNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRL 294
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EEM+S G +P++ ++ GLC ++ + L ++ + L+ Y
Sbjct: 295 GEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR 354
Query: 297 LGRVDE 302
LG + E
Sbjct: 355 LGNIGE 360
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M ++G P +N+++ G V A L ++MV+ + P+ +Y+ I G++ LG
Sbjct: 298 MLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVN-KNLMPDLVSYNTLIYGYTRLG 356
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ +A + +V TY +LI G + D D R +EM+ G P +
Sbjct: 357 NIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFT 416
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ G C L K +L G +
Sbjct: 417 TFVRGFCKMGNLPMAKELFDEMLNRGLQ 444
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 6/243 (2%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD M+ N L Y LI ++ N+ A +F + + + P +N+LI
Sbjct: 330 LDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCR 389
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
GD+ A+ L + M+ P+ T+ F+ GF +GN+ + + + G +
Sbjct: 390 LGDLDVAMRLKDEMIKHGP-DPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRF 448
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y + I G LK D EEM++ G P + ++GL L +K +
Sbjct: 449 AYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKM 508
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQ-LETLTKCNQSPEVLLHFFSGIIRLYALS 334
L G + ++ + G + + LE L+K P V+ ++ +I YA+
Sbjct: 509 LYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSK-GIFPSVVT--YTVLIHSYAVR 565
Query: 335 DRL 337
RL
Sbjct: 566 GRL 568
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA-LSLFEIMVSSEEYKPNSKTYDAF 185
A +F M ++GI P + LI + G + A L FE+ + PN TY+A
Sbjct: 536 ARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEM--HEKGVHPNVITYNAL 593
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G + +D ++A A G S N TY LI+ + + R Y++M+ I
Sbjct: 594 INGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 653
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
P +L+ L KL V+ + G
Sbjct: 654 QPDSCTHRSLLKHLNKDYKLHVVRHLENVIAAG 686
>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 23/304 (7%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF-----SWDALITSLQSSSPK 87
N SV S LI +L+ +S SV +A N F +++ALI SL K
Sbjct: 86 NEASVKLSPALIEEVLK-KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESL----GK 140
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALS-GKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
Q L W L +K + E LI+ + + V A+ F ME G K +S+ F
Sbjct: 141 IKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDF 200
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS---SLGNVDAMNKWYA 203
N ++ S +V A +F+ M + ++P+ K+Y + G+ +L VD +N+
Sbjct: 201 NRMLDTLSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMK 259
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
GF +V Y +I+ KA+ ++ RF+ EM PS I ++ GL + +
Sbjct: 260 DE---GFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEK 316
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL-----EEQLETLTKCNQSPE 318
KL+ F + G+ + LV YC R+++ E +L+ + ++ +
Sbjct: 317 KLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYD 376
Query: 319 VLLH 322
++LH
Sbjct: 377 IILH 380
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 85/236 (36%), Gaps = 37/236 (15%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y +I K + A+ F ME + KP +F SLI +
Sbjct: 261 EGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLND 320
Query: 162 ALSLFEIMVSS-----------------------EEYK-----------PNSKTYDAFIS 187
AL FE SS + YK PN++TYD +
Sbjct: 321 ALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILH 380
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
L + + Y V TYE ++ D + ++EM G++P
Sbjct: 381 ---HLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLP 437
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
+ + ++ LC KLD + +L G + +M +L + + GR D++
Sbjct: 438 GMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKV 493
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 116/280 (41%), Gaps = 13/280 (4%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQN 123
F SS F+ L T +S + AQ V DKM K E + Y L+ G+ N
Sbjct: 193 FKMESSDFN-RMLDTLSKSRNVGDAQKVF----DKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ V M+ +G +PD + +I A + A+ F M KP+ +
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM-EQRNCKPSPHIFC 306
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I+G S ++ +++ + ++GF + TY +L+ ++ + + +EM
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P+ + +L L ++ R K + + + + +V+ +C R+D
Sbjct: 367 GVGPNARTYDIILHHLI---RMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMA 423
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV-EY 342
+ + + P +H FS +I ++LD+ EY
Sbjct: 424 IKIWDEMKGKGVLPG--MHMFSSLITALCHENKLDEACEY 461
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 2/203 (0%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M ++G L + LI+ K ++ A + +M +G P+ +N+L+
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G + A+SL MVS++ PN T+ I+GF G + + A G N
Sbjct: 288 KGKLEKAVSLLNQMVSNK-CVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEY 346
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y SLI G K F+ ++EM+ G P+ + +++GLC KLD + FL +
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406
Query: 276 LGGGWKINENMAQKLVKCYCELG 298
G+ N L++ Y E G
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAG 429
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V S+EA+G + + V++SLI G A+ L++ MV + PN+ Y A I G
Sbjct: 332 VLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVG-KGCGPNTIVYSALIDGL 390
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G +D + + G+ N TY SL+ G +A D ++EM + I +
Sbjct: 391 CREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNE 450
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ GLC K K +L G K++ ++ +C V++
Sbjct: 451 VCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQ 503
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 4/196 (2%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSE--EYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
FNS++ + G AL + +V+S+ PN+ T++ I LG VD + +
Sbjct: 135 FNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFR 194
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ + TY +L+HG K D +EM G P++ ++ LC +
Sbjct: 195 EIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKG 254
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
L R + + G NE LV C G++++ L + P +
Sbjct: 255 DLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVT-- 312
Query: 324 FSGIIRLYALSDRLDD 339
F +I + + R D
Sbjct: 313 FGTLINGFVMQGRASD 328
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M+ +G P+S ++SL+ +GD A+ +++ M ++ N Y I+G
Sbjct: 403 LSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIH-NEVCYSILINGLC 461
Query: 191 SLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P 247
G ++A+ W ++ G ++V Y S+IHG A + + + +M+ G + P
Sbjct: 462 KDGKFMEALMVWKQM-LSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQP 520
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ +L C ++ + R L +L G
Sbjct: 521 DVITYNILLNAFCIQKSIFRAIDILNIMLDQG 552
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 32/306 (10%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM A+G KPD + +L+ G + LF M S + + ++ I
Sbjct: 389 AAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSM-KSNGIAADCRVFNILI 447
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGI 245
++ G VD + G S +V TY ++I S R D++++F +M++ GI
Sbjct: 448 HAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKF-NQMVARGI 506
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KINENMAQKLVKCYCELGRVDELE 304
P+ + +++G C L + K + ++ G + + ++ C+ GRV +
Sbjct: 507 QPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAH 566
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV- 363
+ + +T + P+V+ F+ +I Y L VG+M K +FK + +E+V
Sbjct: 567 DIFDLVTDIGERPDVIT--FTSLIDGYCL----------VGKMDK---AFKILDAMEVVG 611
Query: 364 -----------ICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD 411
+ YF+ D L LF + + K TY ++AG RAG +
Sbjct: 612 VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAAR 671
Query: 412 SVINEM 417
+EM
Sbjct: 672 KKFHEM 677
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 4/191 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI K V AM +FT M+ QG+ PD ++++I A G + A+ F MV +
Sbjct: 446 LIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV-AR 504
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLK-ARDFD 231
+PN+ Y + I GF G + + + I G ++ + S+I+ K R D
Sbjct: 505 GIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMD 564
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ D ++ + +G P + +++G C K+D+ L + G + + L+
Sbjct: 565 AHD-IFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLL 623
Query: 292 KCYCELGRVDE 302
Y + GR+++
Sbjct: 624 DGYFKNGRIND 634
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 125/296 (42%), Gaps = 29/296 (9%)
Query: 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
S +D Y CL+ GK+ A + +ME G++ D +++L+ +G + L+L
Sbjct: 586 SLIDGY-CLV---GKMDK---AFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTL 638
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F M + KPN+ TY ++G G A K + I +G +V V Y ++ G
Sbjct: 639 FREM-QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLC 697
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ D ++++ ++ + SI IL ++ + ++ + K + G NE+
Sbjct: 698 RNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNES 757
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
++ + G V++ ++ K SGI+ L +R+ + G
Sbjct: 758 TYGVMIINLLKDGAVEDANNMFSSMEK------------SGIVPGSRLLNRIIRMLLEKG 805
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY----KLRRATYDFL 397
+ K G ++ S D + ++ A+ L L L KG Y KL A Y+F
Sbjct: 806 EIAKAG-NYLSKVDGKRILLE----ASTTSLMLSLFSRKGKYHEDMKLLPAKYNFF 856
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 112/321 (34%), Gaps = 40/321 (12%)
Query: 134 MEAQGIKPDSAVFN-SLICACLCSGDVVT-ALSLFEIMVS-SEEYKPNSKTYDAFISGFS 190
M G P+ VF+ S+I LC + AL LF++M PN Y+ I GF
Sbjct: 219 MSELGCVPN--VFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFF 276
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + G +V TY +I KAR D + +M + G P
Sbjct: 277 KEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTV 336
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G +L + + G N + + C+ GR E E +++
Sbjct: 337 TYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSM 396
Query: 311 TKCNQSPEV-----LLH----------------------------FFSGIIRLYALSDRL 337
T P++ LLH F+ +I YA +
Sbjct: 397 TAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMV 456
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDF 396
DD M +QG+S VI ++ R D ++ F + + A Y
Sbjct: 457 DDAMLIFTEMQQQGVS-PDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHS 515
Query: 397 LVAGYRRAGLSGKLDSVINEM 417
++ G+ G K +++EM
Sbjct: 516 IIQGFCMHGGLVKAKELVSEM 536
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 37/185 (20%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV------------------------- 145
Y+ +I+ ++ + AM F M A+GI+P++AV
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537
Query: 146 -----------FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
FNS+I + G V+ A +F+++ E +P+ T+ + I G+ +G
Sbjct: 538 NKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGE-RPDVITFTSLIDGYCLVGK 596
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+D K A G ++ TY +L+ G K + + EM G+ P+
Sbjct: 597 MDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGI 656
Query: 255 VLEGL 259
+L GL
Sbjct: 657 MLAGL 661
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMH 129
F+++ LI + + KKA + E + +G + + Y LI ALS K Q V
Sbjct: 288 FTYNILINGHCKEGNVKKALEIFE---NMSRRGVRATVVTYTALIYALSKKGQ-VQETDK 343
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
+F +GI+PD ++N+LI + SG++ A FEIM E+ + P+ TY+ +
Sbjct: 344 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA---FEIMGEMEKKRIAPDDVTYNTLMR 400
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G LG VD K G ++ TY +LI G D R EMM+ G P
Sbjct: 401 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +++GLC + D ++ +K ++ G +++ L++
Sbjct: 461 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 505
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 7/193 (3%)
Query: 69 SSQFSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPF 126
++ ++ ALI +L KK Q+ +L + + +G L Y LI N+
Sbjct: 320 ATVVTYTALIYALS----KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 375
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + ME + I PD +N+L+ G V A L + M + +P+ TY+ I
Sbjct: 376 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERGIQPDLVTYNTLI 434
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG+S G+V + + GF+ + TY +LI G K D + +EM+ GI
Sbjct: 435 SGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGIT 494
Query: 247 PSIPILEKVLEGL 259
P ++EGL
Sbjct: 495 PDDSTYISLIEGL 507
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 12/303 (3%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ + M E GI P+ + ++I G V A+ +F+ M++ E KP
Sbjct: 159 GRVQ---AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 215
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A I G+ G +D + + G ++ V TY L+H
Sbjct: 216 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 275
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM G+ P + ++ G C + + + + G + L+ +
Sbjct: 276 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G+V E ++ + + P+++L ++ +I ++ S +D +G M K+ + +
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVL--YNALINSHSTSGNIDRAFEIMGEMEKKRI---AP 390
Query: 358 EDVEMVICSYFRC--AAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+DV C D +D + + + TY+ L++GY G +
Sbjct: 391 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 450
Query: 415 NEM 417
NEM
Sbjct: 451 NEM 453
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 75/328 (22%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE------------- 173
A+ + + G++PD+ +N+LI AC ++ A+++FE M++SE
Sbjct: 50 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 109
Query: 174 ---------------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
++P++ TY++ + F+ G+V+ + + + AGF
Sbjct: 110 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 169
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ TY ++IH K D Y+EM ++G P +++ L K+DR+
Sbjct: 170 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG---KMDRI---- 222
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
E G+V LE + P ++ FS +I YA
Sbjct: 223 ----------------------SEAGKV------LEEMADAGLKPTLVT--FSALICAYA 252
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR--LDLFLDHIKGSYKLR 390
S R DD E + RM + G+ K +V+ F + R + L+ IK YK
Sbjct: 253 KSGRQDDAERTFDRMVESGV--KPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD 310
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y L+A + +++ VI +M+
Sbjct: 311 DGLYQVLLAALAKGNEHDEIEGVIQDME 338
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G++PD FN+LI G + A +F M + + PN+ TY+ I+G+S +G
Sbjct: 375 MEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEM-KANDVVPNTITYNTLINGYSQVG 433
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N + + + + G ++ TY +LI G +E+ ++P+
Sbjct: 434 NSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFS 493
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ G C R+ +R K ++ G N + + L+ +C+ D E + +++
Sbjct: 494 ALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSER 553
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ +P+ SD L ++ + GK+ L+ K +++EM
Sbjct: 554 SIAPD---------------SDTLSELCRGLWLSGKEELALKLCKEMEM 587
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V N + M GIK D +N+LI G A L + +
Sbjct: 422 YNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVK-EL 480
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I+G N + + Y + I +G N T++ LI K DF
Sbjct: 481 DRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDF 540
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EM I P L ++ GL
Sbjct: 541 DGAVEVVREMSERSIAPDSDTLSELCRGL 569
>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Brachypodium distachyon]
Length = 547
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 105/237 (44%), Gaps = 3/237 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV N+ A ++ M +G++P+ + S + +GD A ++ M+ + +K ++
Sbjct: 286 KVGNIVDARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVYGEMLG-KGFKEST 344
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ + ++GF VD + + G +V TY +LI G K R Y+
Sbjct: 345 VSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQR 404
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++S G+ P++ +++ +C ++D + + G++ ++ +C+ R
Sbjct: 405 LLSSGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARR 464
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
D+ L + K N P+ F+ ++ L + S+R+DD + M K G S
Sbjct: 465 ADDAMAWLAGMLKSNLKPQK--QTFNSLLELLSTSERVDDALLILNTMLKSGFGLDS 519
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 4/204 (1%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
A SG V +H+ M + G PD+ V+ +I AL +F + Y
Sbjct: 215 AASGNFPKVSDTLHL---MISAGYPPDTVVYQCIIHGLFAHKMGGEALRVFN-EIKLRGY 270
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
++ TY I G +GN+ K + + G N Y S + KA DFD +
Sbjct: 271 DIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYK 330
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
Y EM+ G S +L G C ++D S + ++ G + + L++ C
Sbjct: 331 VYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLC 390
Query: 296 ELGRVDELEEQLETLTKCNQSPEV 319
++GR+ E + L P V
Sbjct: 391 KVGRLAEAIRMYQRLLSSGLEPTV 414
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 3/186 (1%)
Query: 112 ACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+C I L+G + V A+ VF M +GI+ D +N+LI G + A+ +++ +
Sbjct: 346 SCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRL 405
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+SS +P T+ I G VD + + A GF V++ +S+I+G KAR
Sbjct: 406 LSSG-LEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARR 464
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + M+ + P +LE L ++D L +L G+ ++
Sbjct: 465 ADDAMAWLAGMLKSNLKPQKQTFNSLLELLSTSERVDDALLILNTMLKSGFGLDSLPCTI 524
Query: 290 LVKCYC 295
LV C
Sbjct: 525 LVDKLC 530
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 18/301 (5%)
Query: 5 CRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRL-LQVPVSQIKTTLDSVD 63
CR L +A S+ ++ L ++ NT T ST LI+ L L+ VS+ +D +
Sbjct: 234 CRKLCLAFSAMGKIIKLGYEP---NTITFST-------LINGLCLEGRVSEALELVDRMV 283
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQ 122
+ + L+ L S + ++L +DKM++ G + Y ++ + K
Sbjct: 284 EMGHKPDLITINTLVNGLCLSGKEAEAMLL---IDKMVEYGCQPNAVTYGPVLNVMCKSG 340
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
AM + ME + IK D AV S+I LC G + A +LF M + N T
Sbjct: 341 QTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIIT 398
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I GF + G D K I + NV T+ LI +K + ++EM+
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 458
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
GI P +++G C LD+ + ++ G N L+ YC+ R+D
Sbjct: 459 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 518
Query: 302 E 302
+
Sbjct: 519 D 519
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 5/211 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M + I P+ F+ LI + + G + A L + M+ P++ TY + I GF
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGF 476
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
++D N+ ++ G N++T+ LI+G KA D + +M G++
Sbjct: 477 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 536
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C KL+ K + ++ N + L+ C+ G E E+ LE
Sbjct: 537 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG---ESEKALEI 593
Query: 310 LTKCNQSP-EVLLHFFSGIIRLYALSDRLDD 339
K +S E+ + ++ II + ++DD
Sbjct: 594 FEKIEKSKMELDIGIYNIIIHGMCNASKVDD 624
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ LSGK AM + M G +P++ + ++ SG A+ L M
Sbjct: 301 LCLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-EERN 356
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + G + N+ TY LI G A +D
Sbjct: 357 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL + K ++ G + L+ +
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ +D+ + ++ + P + F+ +I Y ++R+DD
Sbjct: 477 CKENHLDKANQMVDLMVSKGCDPNI--RTFNILINGYCKANRIDD 519
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 1/215 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ D+ +N+LI G +
Sbjct: 495 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 554
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MVS + PN TY + G G + + + + +++ Y +I
Sbjct: 555 AKELFQEMVS-RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 613
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG A D + + G+ P + ++ GLC + L + + + G
Sbjct: 614 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 673
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L++ + G + + +E L +C S
Sbjct: 674 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 708
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 7/269 (2%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G +P++ F++LI G V AL L + MV +KP+ T + ++G G
Sbjct: 251 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM-GHKPDLITINTLVNGLCLSGKEAE 309
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N TY +++ K+ +M I +++
Sbjct: 310 AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 369
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC LD + + G N L+ +C GR D+ + L + K +P
Sbjct: 370 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 429
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
V+ FS +I + +L + E M +G++ + + I + + D+ +
Sbjct: 430 NVVT--FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL-IDGFCKENHLDKAN 486
Query: 378 LFLDHI--KGSYKLRRATYDFLVAGYRRA 404
+D + KG R T++ L+ GY +A
Sbjct: 487 QMVDLMVSKGCDPNIR-TFNILINGYCKA 514
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 4/188 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++++LI+ S+ + L L + K G + L+ Y LIA GK + + ++
Sbjct: 603 ITYNSLISGYSSAGNVQKALELYETMKK--SGIKPTLNTYHRLIAGCGK-EGLVLVEKIY 659
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + PD ++N+LI + GDV A SL M ++ +P+ TY+ I G
Sbjct: 660 QEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAM-EAQGIQPDKMTYNCLILGHFK 718
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G + + G +TY+ LI G K +DFD +Y EM G PS+ I
Sbjct: 719 EGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSI 778
Query: 252 LEKVLEGL 259
+ ++ GL
Sbjct: 779 CDNLITGL 786
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 146/358 (40%), Gaps = 11/358 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + L+ ++++ F +F++ L A + L ++ ++ LD Y
Sbjct: 303 MEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLS---EEAVRKGVQILD-Y 358
Query: 112 ACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
C I L+ K N+ A V G+ P FN+++ GD+ A + E M
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKM 418
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +PN TY++ + F + N++ K + G NV+TY +LI G ++
Sbjct: 419 -EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCL 477
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
FD + EEM G+ P++ ++ LC + + L ++ G N +
Sbjct: 478 FDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNM 537
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ C G++ + + + P ++ ++ +I ++ + E + +
Sbjct: 538 LIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT--YNILINGLCKKGKVMEAENLASEITR 595
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+GLSF +I Y + L+L+ K K TY L+AG + GL
Sbjct: 596 KGLSFDVI-TYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGL 652
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 2/189 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ NV A+ ++ +M+ GIKP ++ LI C G +V +++ M+
Sbjct: 605 YNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEML 663
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ Y+A I + G+V ++A A G + TY LI G K
Sbjct: 664 QMN-LVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRM 722
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
V +M G+IP + ++ G C + D + + + G+ + ++ L
Sbjct: 723 HKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNL 782
Query: 291 VKCYCELGR 299
+ E GR
Sbjct: 783 ITGLREEGR 791
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 131/328 (39%), Gaps = 43/328 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I + K+ ++ A+ + T M+ G+ P V+N +I + A LF+ M+
Sbjct: 185 YGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML 244
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQ----TYESLIHGSL 225
PN TY+ I G+ +G ++ A NI V NV+ T+ SL++G
Sbjct: 245 D-RRVAPNRITYNTLIDGYCKVGQLEE-----AFNIRERMKVENVEPTIITFNSLLNGLC 298
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+A+ + R EEM G +P + +G +D + + + G +I +
Sbjct: 299 RAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDY 358
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ C+ G +++ EE L+ + +P + FF+ I+ Y ++ ++
Sbjct: 359 TCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGV--FFNTIVNGYCQVGDINKAYTTIE 416
Query: 346 RMGKQGL---------------SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR 390
+M GL K+ E+ E I ++
Sbjct: 417 KMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVE------------- 463
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY+ L+ GY R+ L + ++ EM+
Sbjct: 464 --TYNTLIDGYGRSCLFDRCFQILEEME 489
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 1/175 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+ +F+ + G++PD ++ I A + GD+ A+ L M P Y+ I
Sbjct: 166 TLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGG-VSPGVFVYNVVI 224
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + K + + + N TY +LI G K + E M +
Sbjct: 225 GGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVE 284
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P+I +L GLC + ++ + L+ + G+ + L + + G VD
Sbjct: 285 PTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVD 339
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/196 (15%), Positives = 79/196 (40%), Gaps = 3/196 (1%)
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
P ++ S+ + +KP +F+ ++ + +V+ + +++ + P+ + +
Sbjct: 96 PSHLYTLFSLSSTPMKP---LFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNL 152
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
F+ S + + ++ + +G + Y I ++K D M G
Sbjct: 153 FLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGG 212
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P + + V+ GLC +++ + +L N L+ YC++G+++E
Sbjct: 213 VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAF 272
Query: 305 EQLETLTKCNQSPEVL 320
E + N P ++
Sbjct: 273 NIRERMKVENVEPTII 288
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 1/268 (0%)
Query: 56 KTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115
+ LD++ + S++ LI + S A + L+ + G + Y LI
Sbjct: 241 RQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLI 300
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+ + N+ A+ VF M A +PD +N+++ G A LF +V + +
Sbjct: 301 SACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE-KGF 359
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P++ TY++ + F+ GNVD + + AGF N TY ++IH K D
Sbjct: 360 MPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
Y+EM ++G P +++ L ++ L+ + G K L+ Y
Sbjct: 420 LYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYA 479
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHF 323
+ GR + E + + P+ L +
Sbjct: 480 KGGRRADAENTFDCMIASGVKPDRLAYL 507
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-----CLCSGDVVTALSLFEIMV 170
A SG+ + A + +M +GI PD FN+LI A CL +G V LFE+
Sbjct: 232 ARSGRFDD---ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG--VALDLLFEVRQ 286
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ TY+ IS S N++ + IA+ ++ TY +++ +
Sbjct: 287 SG--LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKA 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +R + E++ G +P +L +D+V+ + L+ G+K NE +
Sbjct: 345 EEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTM 404
Query: 291 VKCYCELGRVD 301
+ Y ++GR+D
Sbjct: 405 IHMYGKMGRLD 415
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 115/298 (38%), Gaps = 50/298 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-----YKPNSKT 181
A VF +M G P N ++ A + G L E+ V EE +K + T
Sbjct: 799 ARAVFDNMIKTGPLPTVDSVNGMMRALIVDG------RLDELYVVVEELQDMNFKISKST 852
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ F+ G+V + K Y AAG+ N+ Y S+I F V+ EM
Sbjct: 853 VLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEME 912
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P + IL +L A DR + +L G + +E+ L+ YC R +
Sbjct: 913 GAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPE 972
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E T N+ MGK+GL+ K + +
Sbjct: 973 ------EGFTLLNE-------------------------------MGKRGLTPK-LQSYK 994
Query: 362 MVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++ + + ++ D + ++ SY+L R+ Y ++ YR AG K ++++ MK
Sbjct: 995 SLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMK 1052
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 138/336 (41%), Gaps = 39/336 (11%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
MLK + + Y LI + + A VF M+ GI+ +++ S+I G
Sbjct: 667 MLKYPDQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFP 726
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFS------SLGNVDAMNK---WYAANI---- 206
TA L + DA SG + ++A K W A I
Sbjct: 727 ETAHRLMD---------------DALQSGIPLNILSCRVIIIEAYGKIKLWQQAEILVKG 771
Query: 207 ---AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
A+G ++ + + +LIH ++ ++ ++ M+ G +P++ + ++ L
Sbjct: 772 LRQASG--IDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDG 829
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
+LD + ++ L +KI+++ L+ + + G V E+ + + P +H
Sbjct: 830 RLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPN--MHL 887
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA-YDR-LDLFLD 381
+ +I L +R DVE + M +G FK + + + + A +DR ++
Sbjct: 888 YRSMISLLCHHNRFRDVELMIAEM--EGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRS 945
Query: 382 HIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ + TY+ L+ Y R+ + +++NEM
Sbjct: 946 ILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK+ + A+ ++ M A G PD+ + +I + + A + E M
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP + A I ++ G + IA+G + Y ++ ++ D
Sbjct: 461 DAG-LKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDT 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ + Y +MM+ P + + +L L K + ++ ++
Sbjct: 520 EKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQ 562
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 34/270 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE--- 167
Y LI + N + + M A+ PD N+++ A GD+ ALS F
Sbjct: 27 YGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKM 86
Query: 168 ----------IMVSS--------EEYK-----------PNSKTYDAFISGFSSLGNVDAM 198
I++ E Y+ P++ Y+ I+G +G +DA
Sbjct: 87 WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAA 146
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ +V TY SLI G + D + E+M G+ P +L G
Sbjct: 147 RNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNG 206
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC + +L+ V L+ ++ G + + +V C CE G+ +E + LE + + P+
Sbjct: 207 LCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPD 266
Query: 319 VLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
V+ + G ++ + + +E VGR
Sbjct: 267 VVTYNSLMDGFCKVSKMDEAERLLEDMVGR 296
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 7/228 (3%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
ACL SGK + A + M + PD +NSL+ + A L E MV
Sbjct: 240 ACLCE-SGKYEE---AGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVG 295
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
P TY I GFS + + AG S ++ TY L+ G KA +
Sbjct: 296 -RRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
E M+ P + ++ GLC K+D + L+ +L G + N ++
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMI 414
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+C+ G+VDE + LE + + + +P+V+ +S +I Y ++R+ D
Sbjct: 415 DGFCKAGKVDEGHKVLELMKEVSCTPDVVT--YSTLIDGYCKANRMQD 460
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 5/244 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIM 169
Y LI + Q + A + M + PD+AV+N LI A LC G + A ++ ++M
Sbjct: 95 YCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLI-AGLCKMGKIDAARNVLKMM 153
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+ TY + I G +D K +G + + Y +L++G K
Sbjct: 154 LE-RSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQ 212
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ V + EEM+ G P V+ LC K + L+ ++ +
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNS 272
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ +C++ ++DE E LE + +P V+ ++ +I ++ +DRL D + M K
Sbjct: 273 LMDGFCKVSKMDEAERLLEDMVGRRCAPTVIT--YTTLIGGFSRADRLADAYRVMEDMFK 330
Query: 350 QGLS 353
G+S
Sbjct: 331 AGIS 334
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 7/207 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A V M GI PD +N L+ +G + A L E+MV
Sbjct: 305 YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ P+ TY ++G LG VD + G N+ T+ ++I G KA
Sbjct: 365 -EKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKV 423
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + E M + P + +++G C K +R++ L G ++ +
Sbjct: 424 DEGHKVLELMKEVSCTPDVVTYSTLIDGYC---KANRMQDAFAIL---GISPDKASYSSM 477
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
++ C G+V+E +E ++ +TK P
Sbjct: 478 LEGLCSTGKVEEAQEVMDLMTKQGCPP 504
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 9/229 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CL+ K + A + M + PD ++ L+ G V A L E+M+
Sbjct: 340 YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN T++ I GF G VD +K + +V TY +LI G KA
Sbjct: 400 E-RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKA--- 455
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+R + LGI P +LEGLC+ K++ + + + G + +
Sbjct: 456 ---NRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALI 512
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ C++ R DE + L+ +++ P L+ +S +I + R++D
Sbjct: 513 IGGLCDVERGDEALKMLQVMSERGCEPN--LYTYSILINGLCKTKRVED 559
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
GI PD A ++S++ +G V A + ++M + + P S Y I G + D
Sbjct: 466 GISPDKASYSSMLEGLCSTGKVEEAQEVMDLM-TKQGCPPTSSHYALIIGGLCDVERGDE 524
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
K G N+ TY LI+G K + + + M+ G +P + +++
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLID 584
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C K+D K + G + ++ L+ +C+ G V++ E ++ + + +P
Sbjct: 585 GFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644
Query: 318 EVLLHF 323
+ +F
Sbjct: 645 DAATYF 650
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S+ KP++ TY A I+GFS GN + + +A FS +V T+ +++ + D D
Sbjct: 17 SDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLD 76
Query: 232 -SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ F +M + IL + GLC +++D L ++ + + L
Sbjct: 77 RALSHFRGKMWCSPTAFTYCIL---IHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL 133
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C++G++D L+ + + + P+V+ ++ +I ++ LD+ + +M +
Sbjct: 134 IAGLCKMGKIDAARNVLKMMLERSCVPDVIT--YTSLIVGCCQTNALDEARKLMEKMKES 191
Query: 351 GLS 353
GL+
Sbjct: 192 GLT 194
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
KP ++ + +LI +G+ L + M++ + P+ T++ + + +G++D
Sbjct: 21 KPSNSTYGALITGFSRAGNSKMVLEIANEMLA-RRFSPDVITHNTILKAYCQIGDLDRAL 79
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + S TY LIHG + + D + +EM+ P + ++ GL
Sbjct: 80 SHFRGKMWC--SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGL 137
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C K+D ++ LK +L + L+ C+ +DE + +E + + +P+
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197
Query: 320 LLH 322
+ +
Sbjct: 198 VAY 200
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + V A++V M +G PD A + SLI +
Sbjct: 535 RGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDA 594
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A F+ M S +P+ Y+ ISGF GNV+ + + G + + TY SL+
Sbjct: 595 AYQCFKTMRDSG-CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653
Query: 222 H 222
Sbjct: 654 R 654
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +V M ++G PD++ ++ +I + V A LF+ M P+ Y I
Sbjct: 206 AYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEM-KRNGIAPDVYVYTTLI 264
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ W+ G + NV TY +LIH LK+R + YE M+S G
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCT 324
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+I +++GLC K+++ K +
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIM 353
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 116/289 (40%), Gaps = 22/289 (7%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
+ Q + D ++ + ++ ALI + L+S KA V E L K N +
Sbjct: 273 IEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPN---IVT 329
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIK-----------------PDSAVFNSLICAC 153
Y LI K + A ++ M+ + ++ P+ + +L+
Sbjct: 330 YTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGL 389
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ V A L + M S E +PN YDA I G G +D + + + G+ N
Sbjct: 390 CKAYQVKEARDLLKSM-SVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPN 448
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY SLI K + D + +M+ P++ I ++++GLC K D +
Sbjct: 449 VYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMV 508
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N ++ + + GRV++ E L+ ++ +P + +
Sbjct: 509 MMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTY 557
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 1/209 (0%)
Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
NE + Y L+ K V A + SM +G +P+ V+++LI C +G + A
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
+F M+ Y PN TY + I +D K + + + NV Y +I G
Sbjct: 435 EVFTTMLECG-YDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDG 493
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
K D + M G P++ +++G ++++ L+ + G N
Sbjct: 494 LCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPN 553
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ L+ C G +DE + LE + +
Sbjct: 554 FVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/201 (16%), Positives = 83/201 (41%), Gaps = 6/201 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM T M A P+ + L+C CL + + +M++ Y P+ + +++ +
Sbjct: 61 AMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCY-PSPRIFNSLV 119
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-----FDSVDRFYEEMM 241
+ G+ K + G Y LI G + + D ++ Y EM+
Sbjct: 120 HAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEML 179
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G++ + + LC K ++ + ++ ++ G+ + + K++ C +V+
Sbjct: 180 EAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVE 239
Query: 302 ELEEQLETLTKCNQSPEVLLH 322
+ + + + + +P+V ++
Sbjct: 240 KAFQLFQEMKRNGIAPDVYVY 260
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
+E + PD+ ++ +I LC + F + + PN TY + G +
Sbjct: 33 LEKEEFVPDTVLYTKMISG-LCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKE 91
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + + I G + + + SL+H ++ D+ + ++M+ G P +
Sbjct: 92 KLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYN 151
Query: 254 KVLEGLCARRK-----LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G+C+ + LD + +L G +N+ +C C +G+ ++
Sbjct: 152 ILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEK 205
>gi|221483021|gb|EEE21345.1| PPR repeat-containing protein, putative [Toxoplasma gondii GT1]
Length = 1945
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 119 GKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+ V V++ ++ ++G++P++ + + A + +G VV AL LFE M + P
Sbjct: 1029 GRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPP 1088
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y I GF+ +D K YA G ++N T+ S++ + D
Sbjct: 1089 NTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLL 1148
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+S GI P + +++G C ++++ LK + K + + L+ +
Sbjct: 1149 EDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKT 1208
Query: 298 GRVDEL-----EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
GRV E Q E + N + +L+ RLY L D
Sbjct: 1209 GRVSLCEYLWEEMQREEIPPSNFTLTILIKMHG---RLYQLQKAFD 1251
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + + + A+ ++ M+ G+ ++ FNS++ AC G + A L E M+
Sbjct: 1093 YSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDML 1152
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ KP+ T+ I G+ G ++ A + Y SL+ G +K
Sbjct: 1153 -SQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRV 1211
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ +EEM I PS
Sbjct: 1212 SLCEYLWEEMQREEIPPS 1229
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 3/229 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ + M G +P+ +NS++ SGD AL L M K + TY
Sbjct: 151 VSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKM-DERNVKADVFTYS 209
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G +DA + G ++ TY SL+ G KA ++ + ++M S
Sbjct: 210 TIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSR 269
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
IIP++ +++ KL K ++ G N L+ YC R+ E
Sbjct: 270 KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEA 329
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L+ + + N SP+++ F+ +I+ Y R+D+ ++ K+GL
Sbjct: 330 NNMLDLMVRNNCSPDIVT--FTSLIKGYCKVKRVDEGMKLFRKISKRGL 376
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P++ +NSL+ + A ++ ++MV + P+
Sbjct: 289 GKLQE---ANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN-CSPD 344
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + + ++
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQ 404
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+SLG++P + +L+GLC KL++ + L ++ M +++ C+ G
Sbjct: 405 EMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGG 464
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 465 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 503
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G + L + M +S + PN T++ I
Sbjct: 224 AISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDM-TSRKIIPNVITFNVLI 282
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N TY SL+ G + + M+
Sbjct: 283 DVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCS 342
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G+++ EE
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 403 FQEMVSLGVLPDVMTY 418
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Query: 134 MEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
ME GI + N +I C C C L ++M Y+P++ T++ I+G
Sbjct: 91 MELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLG--YEPDTTTFNTLINGLCLE 148
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
V A + G NV TY S+++G K+ D +M + +
Sbjct: 149 SKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTY 208
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ LC +D S K + G K + LV C+ G+ ++ + L+ +T
Sbjct: 209 STIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTS 268
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P V+ F+ +I ++ +L + M +G+S
Sbjct: 269 RKIIPNVIT--FNVLIDVFVKEGKLQEANELYKEMITKGIS 307
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + D ++ +I G V A +LF + + KP
Sbjct: 428 NGKLEK---ALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 483
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G N TY +LI L+ D + +
Sbjct: 484 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLI 543
Query: 238 EEMMSLG 244
EEM S G
Sbjct: 544 EEMKSCG 550
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M +G +PD + N+ + +GDV ++FE + + P+ ++Y I G
Sbjct: 518 IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED-IKGYGFLPDVRSYSILIHGL 576
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G + + A GF+++ + Y +++ G K+ D EEM + P++
Sbjct: 577 TKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTV 636
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++GL +LD + G ++N + L+ + ++GR+DE LE
Sbjct: 637 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 696
Query: 310 LTKCNQSPEV 319
+ K +P V
Sbjct: 697 MMKKGLTPNV 706
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 41/305 (13%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S S+++++T L L L + K + N S + ++ ++GKV+ A
Sbjct: 356 SVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEE---AYM 412
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ ME G+ P+ N ++ + A +FE S PNS TY + I G
Sbjct: 413 IRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET-ASQRGCNPNSVTYCSLIDGL 471
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-----HGS-------------------- 224
GNVD + + + G + N Y SLI HG
Sbjct: 472 GKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDL 531
Query: 225 ----------LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
KA D + +E++ G +P + ++ GL + S
Sbjct: 532 TLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHA 591
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+ G+ ++ +V +C+ G++D+ E LE + K + P + + S II A
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM-KVKRVPPTVATYGS-IIDGLAKI 649
Query: 335 DRLDD 339
DRLD+
Sbjct: 650 DRLDE 654
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 147/386 (38%), Gaps = 55/386 (14%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE----YACLIALSGKVQNVPFAMHVFT 132
L T+L + ++ ++ L +KG SCL+ Y I GK NV A F
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKG--SCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 276
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+++QG+KPD + S+I +G + A LF M +E P + Y+ I G+ S
Sbjct: 277 ELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQM-ETERAVPCAYAYNTMIMGYGSA 335
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE-------------- 238
G + K G +V ++ S++ K R D +E
Sbjct: 336 GQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYN 395
Query: 239 --------------------EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
EM G+ P++ + +++ LC +K + +
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQR 455
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETL--TKCNQSPEVLLHFFSGIIRLYALSDR 336
G N L+ + G VD+ E + T N +P V ++ +IR + + R
Sbjct: 456 GCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVV----YTSLIRNFFMHGR 511
Query: 337 LDDVEYSVGRMGKQGLSFKSAEDVEMV---ICSYFRCAAYDRLDLFLDHIKGSYKLRRA- 392
+D M ++G D+ ++ + F+ ++ + IKG L
Sbjct: 512 KEDGHKIFKEMNRRGCQ----PDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVR 567
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
+Y L+ G +AG + + S+ + MK
Sbjct: 568 SYSILIHGLTKAGQARETSSIFHAMK 593
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F +M+ QG D+ +N+++ SG + A + E M + P TY + I G
Sbjct: 588 IFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM-KVKRVPPTVATYGSIIDGL 646
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ + +D + + G +NV Y SLI G K D EEMM G+ P++
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 706
Query: 250 PILEKVLEGLCARRKLD 266
+++ L +++
Sbjct: 707 YTWNSLMDALVKAEEIN 723
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 1/164 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V +F ++ G PD ++ LI +G S+F M + + ++
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM-KQQGFALDA 601
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ Y+A + GF G +D + V TY S+I G K D +EE
Sbjct: 602 RAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 661
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
S GI ++ + +++G ++D L+ ++ G N
Sbjct: 662 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 705
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 92/209 (44%), Gaps = 6/209 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++A++ +S KA VLE + +K + Y +I K+ + A +F
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLE---EMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLF 659
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+++GI+ + V++SLI G + A + E M+ + PN T+++ +
Sbjct: 660 EEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMK-KGLTPNVYTWNSLMDALVK 718
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ + + S N TY LI+G + + ++ F++EM G++P++
Sbjct: 719 AEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVT 778
Query: 252 LEKVLEGLCARRKL-DRVKSFLKFLLGGG 279
++ GL + D F +F GG
Sbjct: 779 YTTMIAGLAKVGNITDACSLFERFKANGG 807
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMH 129
F+++ LI + + KKA + E + +G + + Y LI ALS K Q V
Sbjct: 328 FTYNILINGHCKEGNVKKALEIFE---NMSRRGVRATVVTYTSLIYALSKKGQ-VQETDK 383
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
+F +GI+PD ++N+LI + SG++ A FEIM E+ + P+ TY+ +
Sbjct: 384 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA---FEIMGEMEKKRIAPDDVTYNTLMR 440
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G LG VD K G ++ TY +LI G D R EMM+ G P
Sbjct: 441 GLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 500
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ +++GLC + D ++ +K ++ G
Sbjct: 501 TLLTYNALIQGLCKNGQGDDAENMVKEMVENG 532
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 3/184 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL + KK Q+ +L + + +G L Y LI N+ A + ME
Sbjct: 366 TSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 425
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+ I PD +N+L+ G V A L + M + +P+ TY+ ISG+S G+V
Sbjct: 426 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TKRGIQPDLVTYNTLISGYSMKGDVK 484
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + GF+ + TY +LI G K D + +EM+ GI P ++
Sbjct: 485 DALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 544
Query: 257 EGLC 260
EGL
Sbjct: 545 EGLT 548
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 122/303 (40%), Gaps = 12/303 (3%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ + M E GI P+ + ++I G V A+ +F+ M++ E KP
Sbjct: 199 GRVQ---AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 255
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A I G+ G +D + + G ++ V TY L+H
Sbjct: 256 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 315
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM G+ + ++ G C + + + + G + L+ +
Sbjct: 316 EEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 375
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G+V E ++ + + P+++L ++ +I ++ S +D +G M K+ + +
Sbjct: 376 GQVQETDKLFDEAVRRGIRPDLVL--YNALINSHSTSGNIDRAFEIMGEMEKKRI---AP 430
Query: 358 EDVEMVICSYFRC--AAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+DV C D +D + K + TY+ L++GY G +
Sbjct: 431 DDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIR 490
Query: 415 NEM 417
NEM
Sbjct: 491 NEM 493
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 2/206 (0%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+K G + L Y+ LI K++ A V +G P+ V+N+LI
Sbjct: 372 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 431
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G++ AL + MVS + PNS T ++ I GF +G ++ ++ GFS+N
Sbjct: 432 GNLGDALRIRGDMVS-KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGA 490
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++IH F+S RF EM+ + P+ +L ++ GLC K LL
Sbjct: 491 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 550
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ N L+ C+ G + E
Sbjct: 551 EKGFGANLVTTNALIHGLCKTGNMQE 576
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 6/279 (2%)
Query: 44 ISRLLQVPVSQIKTT--LDSVDIFAF--NSSQFSWDALITSLQSSSPKKAQLVLE-WRLD 98
+ L+ V +Q + +++ +F F N F T L SS K +L W +
Sbjct: 244 VDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFE 303
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
M +G + ++ I K V A+ +F ME G+ P+ +N+LI G+
Sbjct: 304 TMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 363
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ A E MV + TY I+G L + N + GF+ N Y
Sbjct: 364 LDEAFRFKEKMVK-DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYN 422
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+LI G K + R +M+S GI P+ L +++G C ++++ + L+ +L
Sbjct: 423 TLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 482
Query: 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G+ IN ++ C R + L + N P
Sbjct: 483 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 521
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 8/241 (3%)
Query: 120 KVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +NV F A+ VF + +G+ P L+ + + + ++ + +FE M + P
Sbjct: 254 QFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM--RQGVSP 311
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ + I+ F G V+ + + G S NV TY +LIHG K + D RF
Sbjct: 312 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 371
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+ G+ ++ ++ GL K + S LK L G+ NE + L+ YC++
Sbjct: 372 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 431
Query: 298 GRV-DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G + D L + + ++K V L + II+ + +++ E + M +G S
Sbjct: 432 GNLGDALRIRGDMVSKGINPNSVTL---NSIIQGFCKIGQMEQAECILEEMLSRGFSINP 488
Query: 357 A 357
Sbjct: 489 G 489
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 7/293 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ + +G + N+LI +G++ A+ L + M+ + + TY+ I
Sbjct: 542 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE-RGFVLDKITYNTLI 600
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG G V+ K + G + TY LIHG + D + E S ++
Sbjct: 601 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 660
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C K++ + LL ++N + L++ YC G E +
Sbjct: 661 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 720
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P +S +I R++D + + M K+GL + +I
Sbjct: 721 HDDMRSKGIPPTTAT--YSSLIHGMCNIGRMEDAKCLIDEMRKEGL-LPNVVCYTALIGG 777
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + D++ L + SY + + TY ++ GY ++G +++EM
Sbjct: 778 YCKLGQMDKVVNVLQEMS-SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 829
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 1/159 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N A + M ++GI P +A ++SLI G + A L + M
Sbjct: 701 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM- 759
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN Y A I G+ LG +D + + N TY +I G K+ D
Sbjct: 760 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ + EM+ GI+P + G C K++ K
Sbjct: 820 KTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGK 858
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 107/281 (38%), Gaps = 41/281 (14%)
Query: 58 TLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
T++ ++ F + ++++LI K+ EW KG ++ Y LI
Sbjct: 408 TIERMESFGLRPNSITFNSLIDKF--CDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDG 465
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS--------------------- 156
GK+ + ME G+KP+ + SLI CLC
Sbjct: 466 YGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLI-NCLCKDGKILEAEIVLRDMICRGVLP 524
Query: 157 ---------------GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
G V AL F+ M+ SE P TY+ I G G + +
Sbjct: 525 NAQVYNMLIDGSCMVGKVKDALRFFDEMMRSE-ISPTLVTYNVLIDGLCKKGKLTEAEDF 583
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
++G S +V TY SLI G A + YE M +LGI P++ ++ G C+
Sbjct: 584 LTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CS 642
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ ++ V+ +L + + ++ CY E+G +
Sbjct: 643 KEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQK 683
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 124/309 (40%), Gaps = 39/309 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA I + K+QN+ M SM +G++P+ ++N LI + A +F+ M
Sbjct: 179 YAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMC 238
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + TY+ I G+ +G +DA K + N+ T+ SL+ G K R
Sbjct: 239 NIN-LVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKM 297
Query: 231 DSVDRFYEEMMSLGIIP--------------------SIPILEK---------------V 255
+EM G +P ++ + E+ +
Sbjct: 298 KEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSIL 357
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L GLC + K+++ + LK G +E + V YC +G +++ +E +
Sbjct: 358 LNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGL 417
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P + F+ +I + +D E V +M ++G++ S E +I Y + +DR
Sbjct: 418 RPNSIT--FNSLIDKFCDMKEMDKAEEWVKKMAEKGVT-PSVETYNTLIDGYGKLCTFDR 474
Query: 376 LDLFLDHIK 384
L+ ++
Sbjct: 475 CFQILEQME 483
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 129/293 (44%), Gaps = 10/293 (3%)
Query: 34 STSVSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQL 91
+ ++ + N L+S L ++ + + ++ L +++ F +++ L L + A
Sbjct: 278 APNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAME 337
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+ E +K ++ ++ Y I L+G K V A + G+ D ++N+
Sbjct: 338 LYEQATEKGIR-----INNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTF 392
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ GD+ A+ E M S +PNS T+++ I F + +D +W G
Sbjct: 393 VNGYCRIGDMNKAILTIERM-ESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKG 451
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ +V+TY +LI G K FD + E+M +G+ P++ ++ LC K+ +
Sbjct: 452 VTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAE 511
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ ++ G N + L+ C +G+V + + + + SP ++ +
Sbjct: 512 IVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTY 564
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 109/292 (37%), Gaps = 12/292 (4%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSS 191
M +G+ P +N+LI G + T F+I+ EE KPN +Y + I+
Sbjct: 447 MAEKGVTPSVETYNTLIDG---YGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCK 503
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G + I G N Q Y LI GS RF++EMM I P++
Sbjct: 504 DGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVT 563
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++GLC + KL + FL + G + L+ Y G V + ET+
Sbjct: 564 YNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMK 623
Query: 312 KCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
P V + SG + + ++ VE M + L M+ C
Sbjct: 624 NLGIKPTVRTYHPLISGCSK-----EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEI 678
Query: 370 CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
L + + TY+ L+ G+ R G + ++N MK E
Sbjct: 679 GNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKE 730
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 1/145 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I ++ N A + M QGI PD +NSLI G + L M
Sbjct: 668 YNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNM- 726
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++E P + TYD + G L + WY + F N L G +
Sbjct: 727 KAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRL 786
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKV 255
V EM GII P E++
Sbjct: 787 QEVQVICSEMNVKGIINHWPSKEEI 811
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 38/249 (15%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F +E G + D+ ++ I A + ++ + + M +PN Y+ I G
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSM-RKRGVRPNVFIYNVLIGGL 221
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ K + ++ TY +LI G K + D+ + E M + P+I
Sbjct: 222 CREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNI 281
Query: 250 PILEKVLEGLCARRKLDRVKSFLK------FLLGG------------------------- 278
+L GLC RK+ +S LK F+ G
Sbjct: 282 ITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQ 341
Query: 279 ----GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
G +IN L+ C+ G+V++ EE L+ T+ + +++ F +G R+
Sbjct: 342 ATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGD 401
Query: 333 LSDRLDDVE 341
++ + +E
Sbjct: 402 MNKAILTIE 410
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 11/218 (5%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
++QI ++ S D+ +NS LI+ ++ L L + + G + + Y
Sbjct: 584 LTQITSSGHSPDVITYNS-------LISGYANAGNVSKCLGLYETMKNL--GIKPTVRTY 634
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI+ K + + ++ M + PD V+N++I G+ A SL + M+
Sbjct: 635 HPLISGCSK-EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLD 693
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ P+ TY++ I G G + + A + TY+ L+ G +DF
Sbjct: 694 -QGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFS 752
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+Y EM+ +P+ I ++ GL +L V+
Sbjct: 753 GAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQ 790
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 2/194 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ NV + ++ +M+ GIKP ++ LI C G + L+ M+
Sbjct: 599 YNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEML 657
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ Y+A I ++ +GN + + G + TY SLI G +
Sbjct: 658 QMN-LLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKL 716
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M + + P + +++G C + + + ++ + N ++ +L
Sbjct: 717 SNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNEL 776
Query: 291 VKCYCELGRVDELE 304
+ GR+ E++
Sbjct: 777 TAGLEQEGRLQEVQ 790
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 4/215 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M ++G+ P+ VF+ +I G+V A +++ MV++ KPN Y A I
Sbjct: 437 ACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAG-IKPNVVLYSAMI 495
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G + + I A N+ TY S++ G + D F+E+M+ +G
Sbjct: 496 DGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCT 555
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEE 305
P+ ++ GLC + K +LG G + ++K +C G VD L
Sbjct: 556 PNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRL 615
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ L + + P+V+ + G++R L +D
Sbjct: 616 FYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMD 650
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A +G+V + A+ + M G+ A FN ++ A L +GDV A LF M +
Sbjct: 324 LADAGRVDD---AVALVHEMVVDGVVAAEA-FNPVLGAMLRTGDVTGAAKLFSFM-QLKG 378
Query: 175 YKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TY+ + G G A M + A + G V TY +++ G ++
Sbjct: 379 CAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPG----VMTYGAVVDGLVRCGRL 434
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + EEM S G++P+ + V+ G C ++DR ++ G K N + +
Sbjct: 435 EDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAM 494
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ G++ E E + + P ++ +S ++R Y
Sbjct: 495 IDGLARCGKMTEAELLFREMIEAKCVPNIMT--YSSMVRGY 533
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ +V A +F+ M+ +G P +A +N L+ L G A+ + M E P
Sbjct: 360 RTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRM-ERAEVVPGV 418
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY A + G G ++ K + G N + +I G K + D R ++
Sbjct: 419 MTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDT 478
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ GI P++ + +++GL K+ + + ++ N +V+ Y ++G
Sbjct: 479 MVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGD 538
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
+ E + + +P + +
Sbjct: 539 SSQALSFWEDMLRIGCTPNAVTY 561
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 1/268 (0%)
Query: 56 KTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115
+ LD++ + S++ LI + S A + L+ + G + Y LI
Sbjct: 241 RQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLI 300
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
+ + N+ A+ VF M A +PD +N+++ G A LF +V + +
Sbjct: 301 SACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVE-KGF 359
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P++ TY++ + F+ GNVD + + AGF N TY ++IH K D
Sbjct: 360 MPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVG 419
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
Y+EM ++G P +++ L ++ L+ + G K L+ Y
Sbjct: 420 LYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYA 479
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHF 323
+ GR + E + + P+ L +
Sbjct: 480 KGGRRADAENTFDCMIASGVKPDRLAYL 507
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-----CLCSGDVVTALSLFEIMV 170
A SG+ + A + +M +GI PD FN+LI A CL +G V LFE+
Sbjct: 232 ARSGRFDD---ARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG--VALDLLFEVRQ 286
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ TY+ IS S N++ + IA+ ++ TY +++ +
Sbjct: 287 SG--LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKA 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +R + E++ G +P +L +D+V+ + L+ G+K NE +
Sbjct: 345 EEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTM 404
Query: 291 VKCYCELGRVD 301
+ Y ++GR+D
Sbjct: 405 IHMYGKMGRLD 415
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 115/298 (38%), Gaps = 50/298 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-----YKPNSKT 181
A VF +M G P N ++ A + G L E+ V EE +K + T
Sbjct: 799 ARAVFDNMIKTGPLPTVDSVNGMMRALIVDG------RLDELYVVVEELQDMNFKISKST 852
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ F+ G+V + K Y AAG+ N+ Y S+I F V+ EM
Sbjct: 853 VLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEME 912
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P + IL +L A DR + +L G + +E+ L+ YC R +
Sbjct: 913 GAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPE 972
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E T N+ MGK+GL+ K + +
Sbjct: 973 ------EGFTLLNE-------------------------------MGKRGLTPK-LQSYK 994
Query: 362 MVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++ + + ++ D + ++ SY+L R+ Y ++ YR AG K ++++ MK
Sbjct: 995 SLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMK 1052
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 128/309 (41%), Gaps = 39/309 (12%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ GI+ +++ S+I G TA L + DA
Sbjct: 694 ACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMD---------------DALQ 738
Query: 187 SGFS------SLGNVDAMNK---WYAANI-------AAGFSVNVQTYESLIHGSLKARDF 230
SG + ++A K W A I A+G ++ + + +LIH ++ +
Sbjct: 739 SGIPLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASG--IDRRIWNALIHAYAESGLY 796
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++ M+ G +P++ + ++ L +LD + ++ L +KI+++ L
Sbjct: 797 EKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLL 856
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + + G V E+ + + P +H + +I L +R DVE + M +
Sbjct: 857 LDAFAKAGDVFEVMKIYNGMKAAGYLPN--MHLYRSMISLLCHHNRFRDVELMIAEM--E 912
Query: 351 GLSFKSAEDVEMVICSYFRCAA-YDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
G FK + + + + A +DR ++ ++ + TY+ L+ Y R+
Sbjct: 913 GAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPE 972
Query: 409 KLDSVINEM 417
+ +++NEM
Sbjct: 973 EGFTLLNEM 981
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK+ + A+ ++ M A G PD+ + +I + + A + E M
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP + A I ++ G + IA+G + Y ++ ++ D
Sbjct: 461 DAG-LKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDT 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ + Y +MM+ P + + +L L K + ++ ++
Sbjct: 520 EKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQ 562
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 7/236 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKT 181
A +F M+ G P+ +L+ SG++ AL L + M+S KPN+ +
Sbjct: 426 ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 485
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G G D + + A G +V +Y SLIHG ++ + + EM+
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 545
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+G+ P + +++ LC K+ L+ ++ G N LVK C R+
Sbjct: 546 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 605
Query: 302 ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
E + + K P+V+ + G+ + + L+ + + G+ G +FK
Sbjct: 606 EATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFK 661
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----EYKPNSKT 181
A +F SM+ G +PD+ + +L+ +G++ TAL L + M++ + KP +
Sbjct: 245 ATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLIS 304
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G D + + A G +V +Y +LIHG + ++ + EM+
Sbjct: 305 YSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML 364
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+GI P + +++ LC + K+ L+ ++ G + LVK C R+
Sbjct: 365 DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRIS 424
Query: 302 ELEEQLETLTKCNQSPEVL 320
+ + + K P V+
Sbjct: 425 KATQLFLKMQKLGCMPNVV 443
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEY----KPNSKT 181
A +F SM+ G +PD+ + +L+ +G + AL L + M++ + +Y KP +
Sbjct: 64 ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G D + + A G +V +Y SLIHG ++ ++ + EM+
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+GI + +++ LC K+ L+ ++ G ++ L+K C R+
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243
Query: 302 ELEEQLETLTKCNQSPEVL 320
E ++ K P+ +
Sbjct: 244 EATRLFMSMQKLGCRPDAI 262
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LI + K V A + M +G P++ + +L+ LC D ++ + + +
Sbjct: 556 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKG-LCMNDRISEATQLFMKM 614
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY------AANIAAGFSVNVQTYESLIHGS 224
P+ TY + G GN+ + + F +V +Y +I G
Sbjct: 615 QKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGL 674
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
K D ++EM +LG+IP++ ++ G C KL+ K ++ G ++N
Sbjct: 675 CKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNA 734
Query: 285 NMAQKLVKCYCELGRVDE 302
++ +C+ G++D+
Sbjct: 735 VTYSVMIHGFCKEGQIDK 752
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 46/218 (21%)
Query: 138 GIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVS----------------------- 171
GI+PD S V + C G V+ A L E+MV
Sbjct: 5 GIQPDVTTSGVLIDMFCK---EGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRI 61
Query: 172 SEEY-----------KPNSKTYDAFISGFSSLGNVDAMNKWYAA--NIAAGFSVNVQ--- 215
SE +P++ Y + G G ++ + N + + + +
Sbjct: 62 SEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTL 121
Query: 216 -TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
+Y +I G K R D ++EM + G++P + ++ G C K ++ K
Sbjct: 122 VSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNE 181
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L G + + + L+ C+ G+V E E LE + +
Sbjct: 182 MLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQ 219
>gi|237840063|ref|XP_002369329.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
gi|211966993|gb|EEB02189.1| PPR repeat-containing protein [Toxoplasma gondii ME49]
Length = 1945
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 119 GKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+ V V++ ++ ++G++P++ + + A + +G VV AL LFE M + P
Sbjct: 1029 GRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPP 1088
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y I GF+ +D K YA G ++N T+ S++ + D
Sbjct: 1089 NTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLL 1148
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+S GI P + +++G C ++++ LK + K + + L+ +
Sbjct: 1149 EDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKT 1208
Query: 298 GRVDEL-----EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
GRV E Q E + N + +L+ RLY L D
Sbjct: 1209 GRVSLCEYLWEEMQREEIPPSNFTLTILIKMHG---RLYQLQKAFD 1251
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + + + A+ ++ M+ G+ ++ FNS++ AC G + A L E M+
Sbjct: 1093 YSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDML 1152
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ KP+ T+ I G+ G ++ A + Y SL+ G +K
Sbjct: 1153 -SQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRV 1211
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ +EEM I PS
Sbjct: 1212 SLCEYLWEEMQREEIPPS 1229
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F M +G P FN++I A G+VV A LF+ + + PN+ Y+ +
Sbjct: 320 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGL-KEMGFSPNAIMYNTLM 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +D N Y G + + T+ L+ G K + DR +++ LG++
Sbjct: 379 NGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLL 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + + GLC +LD FL +L G + ++ Y + G D+ E
Sbjct: 439 PDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEA 498
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +P S ++ +++ RL + +G+M ++GLS
Sbjct: 499 YKLMVHFGLTPSP--STCSSLLMGLSINGRLQEATELIGQMIEKGLS 543
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +VF M +G+ P++ +NSLIC G + AL L ++M P+ T + I
Sbjct: 600 AYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVM-RHRGLLPDIFTTNMII 658
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + + G S ++ TY +LI+G KA D + D M + G
Sbjct: 659 GGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSN 718
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
P + + G C+ R+++R L L+ G N ++ C
Sbjct: 719 PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC 767
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 38/291 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M +G+ P FNS+I A +G A +++MV P+ T + +
Sbjct: 460 AMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFG-LTPSPSTCSSLL 518
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S G + + I G SVN + L+ K D + EM GI
Sbjct: 519 MGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIF 578
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++GL + ++ + +L G N L+ +C+ G+++E +
Sbjct: 579 PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKL 638
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P++ F + +I +G + KQG +SA
Sbjct: 639 EKVMRHRGLLPDI---FTTNMI---------------IGGLCKQG-RMRSA--------- 670
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+++F+D + TY+ L+ GY +A D+++N M
Sbjct: 671 ---------INVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRM 712
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L K L N + C GK+ A+ + M +G+ PD N +I
Sbjct: 608 LRKGLIPNNFAYNSLICGFCKCGKLNE---ALKLEKVMRHRGLLPDIFTTNMIIGGLCKQ 664
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS---LGNVDAM-NKWYAANIAAGFSV 212
G + +A+++F M P+ TY+ I+G+ + N D + N+ YA+ G +
Sbjct: 665 GRMRSAINVFMDM-HQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYAS----GSNP 719
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
++ TY IHG +R + +E++S GI+P+ +L G+C+
Sbjct: 720 DLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVCS 768
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
++++G++Q A + M +G+ ++ F L+ GDVV A SL+ M
Sbjct: 521 LSINGRLQE---ATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGI 577
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ P+ + AFI G S G V+ + + G N Y SLI G K +
Sbjct: 578 F-PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEAL 636
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ + M G++P I ++ GLC + ++
Sbjct: 637 KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRM 667
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 38/256 (14%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A L L +V + +F + +G +P F+ +I G + SL +M
Sbjct: 235 AILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLM-P 293
Query: 172 SEEYKPNSKTY-----------------------------------DAFISGFSSLGNVD 196
+PN+ Y + I+ F GNV
Sbjct: 294 KFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVV 353
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
K + GFS N Y +L++G +K R+ D + YEEM GI P ++
Sbjct: 354 EARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILV 413
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G + + LK + G + ++ V C GR+DE E L + + S
Sbjct: 414 SGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLS 473
Query: 317 PEVLLHFFSGIIRLYA 332
P ++ F+ +I Y+
Sbjct: 474 PSIIA--FNSVIAAYS 487
>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 525
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 4/261 (1%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119
DS++ + S+ ++ +I L + +++ +G + L Y+ ++
Sbjct: 101 DSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFD-LLIAYSTIMDSLC 159
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPN 178
K + A++ F+ M +GI+PD +NSLI LCS G A +L M+ + PN
Sbjct: 160 KDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHG-LCSFGRWNEATTLLGNMMR-KGIMPN 217
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+T++ + F G + + G +V TY S+I G + + +E
Sbjct: 218 VQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFE 277
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+ G++P++ ++ G C R +++ L ++ G ++ L+ +C+ G
Sbjct: 278 LMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAG 337
Query: 299 RVDELEEQLETLTKCNQSPEV 319
R + E T+ + +Q P +
Sbjct: 338 RPEAAIELFCTMHEHHQLPNL 358
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/271 (18%), Positives = 106/271 (39%), Gaps = 39/271 (14%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ F V +M G++P F +LI LC+ V A + F + Y+ NS
Sbjct: 54 HLKHTVFGFSVLGAMFKIGVEPTVVTFATLING-LCAEGNVGAAARFADSLEDMGYESNS 112
Query: 180 KTYDAFISGFSSLGN----------VDAMNKWYAANIA---------------------- 207
T+ I+G +G+ ++ N+ + IA
Sbjct: 113 YTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFS 172
Query: 208 ----AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G ++ Y SLIHG ++ MM GI+P++ +++ C
Sbjct: 173 GMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEG 232
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
K+ R K+ + F++ G + + ++ +C L ++++ + E + P V+
Sbjct: 233 KISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVT-- 290
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
+S +I + + ++ + + M GL+
Sbjct: 291 YSSLIHGWCKTRNINKAIFVLDEMVNNGLNL 321
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
F +HV G++PD +NS+I CL S + A+ +FE+M+ + PN TY +
Sbjct: 243 FMVHV-------GVEPDVVTYNSVISGHCLLS-QMNDAVKVFELMIH-KGLLPNVVTYSS 293
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G+ N++ + G +++V T+ +LI G KA ++ + M
Sbjct: 294 LIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHH 353
Query: 245 IIPSIPI-----------------------LEK------------VLEGLCARRKLDRVK 269
+P++ +EK VL+G+C+ K + +
Sbjct: 354 QLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAR 413
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGI 327
L G +I+ ++K C+ G +D+ E+ L + + P + G+
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGL 473
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
++ Y +S +Y + GK GLS A E++I SYF
Sbjct: 474 LQRYDIS---RSTKYLMLMKGK-GLS-ADATTTELLI-SYF 508
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 135/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ GK ++ + M G+ P + ++I A G++ AL LF+ M
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG 643
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ Y+ I+ FS LGN NV+TY +L +
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG 703
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++ + +EM+ P+ +E ++E L +L +++ F++
Sbjct: 704 ETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQ 746
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>gi|221503954|gb|EEE29631.1| PPR repeat-containing protein, putative [Toxoplasma gondii VEG]
Length = 1945
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 119 GKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+ V V++ ++ ++G++P++ + + A + +G VV AL LFE M + P
Sbjct: 1029 GRTGKVKACWTVWSKLKNSRGLQPNAVAYGCMYDALVSNGRVVEALELFEEMKREGQVPP 1088
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y I GF+ +D K YA G ++N T+ S++ + D
Sbjct: 1089 NTIMYSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLL 1148
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+S GI P + +++G C ++++ LK + K + + L+ +
Sbjct: 1149 EDMLSQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKT 1208
Query: 298 GRVDEL-----EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
GRV E Q E + N + +L+ RLY L D
Sbjct: 1209 GRVSLCEYLWEEMQREEIPPSNFTLTILIKMHG---RLYQLQKAFD 1251
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + + + A+ ++ M+ G+ ++ FNS++ AC G + A L E M+
Sbjct: 1093 YSTIIKGFAQSKQLDRALKMYAEMQQNGVAINTVTFNSIVDACARVGAMDKAAMLLEDML 1152
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ KP+ T+ I G+ G ++ A + Y SL+ G +K
Sbjct: 1153 -SQGIKPDLITFSTIIKGYCVHGEMNKALHLLKAMRERHIKPDGVLYNSLLDGCVKTGRV 1211
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ +EEM I PS
Sbjct: 1212 SLCEYLWEEMQREEIPPS 1229
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 6/224 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A+ +F ME G P+ N++I + A +F M +++ P+S
Sbjct: 127 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EAKDIPPDS 185
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I G + G ++ K + + +G + + TY +IHG A D ++
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G PS +++ C R KLD LK + G + L+ C + R
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305
Query: 300 VDELEEQLETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLD 338
VD+ LE + K P V L+H R+ + LD
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + M G PD +++LI LCS V A L E MV + KP T +
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISG-LCSIARVDDARHLLEDMVK-RQCKPTVVTQNTL 331
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G G + + A +++G S +V TY +L+HG +A + +M++ G+
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ ++ GLC +L + G N L+ +C G+VD
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFA 127
S+F+++ LI + K+ +L +RL K + + D Y+ LI+ + V A
Sbjct: 254 SRFTFNILI----DAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
H+ M + KP N+LI +G + A + + MVSS + P+ TY+ +
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVH 368
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G + + + +A G + NV TY +L+ G KA + +M S G P
Sbjct: 369 GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 428
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ ++ G C+ ++D ++ G + + L C+ GR
Sbjct: 429 NLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 117/288 (40%), Gaps = 12/288 (4%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + + PDS + LI +G + A +LF+ ++ S P++ Y + I G
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS-GVTPSTVAYTSLIHGLCMAN 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ D + +A G + TY +I S K + ++M+ G +P +
Sbjct: 60 SFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
V++GLC +++ + G N ++ C+ ++D+ + +
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAK 179
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
+ P+ + +I A + +L++ RM G++ SA +VI + C AY
Sbjct: 180 DIPPDSWSYGI--LIDGLAKAGKLNEAYKLFQRMLDSGIT-PSAVTYNVVI--HGMCLAY 234
Query: 374 ---DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ L+LF + R T++ L+ + + GKLD +K
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCK---RGKLDEAFRLLK 279
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A ++F + G+ P + + SLI + A LF M
Sbjct: 13 YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM- 71
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY+ I G ++ I G +V TY +++ G K+
Sbjct: 72 NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 131
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + EM LG P+ ++ GLC + K+D+
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQ 168
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 15/265 (5%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKK--AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
F +N+ S++ALI +L K LV E + K+L D +A + + +
Sbjct: 153 FKYNTE--SYNALIEALGKIKQFKLIRSLVNEMKSRKLLNK-----DTFALISRRHARAR 205
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V A+ F ME G K +++ FN L+ S V A +F+ M + P+ K+Y
Sbjct: 206 KVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKM-KKRRFVPDIKSY 264
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ G+ N+ +++ Y GF +V TY LI KA+ +D+ + EM +
Sbjct: 265 TILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEA 324
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+ + ++ GL + ++L F + G+ LV YC R+D+
Sbjct: 325 KNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDD 384
Query: 303 LEEQLETLTKCNQSP-----EVLLH 322
+ ++ + K + P +++LH
Sbjct: 385 AFQVIDEMRKHSAGPNSRTYDIILH 409
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 2/211 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G + + A+ F ++ G P++ +NSL+ A S + A + + M
Sbjct: 334 YCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEM- 392
Query: 171 SSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
PNS+TYD + + +A ++ + G V TYE ++
Sbjct: 393 RKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDR 452
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D + +++M + G++P + + ++ LC + KL + + +L G + M
Sbjct: 453 VDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRPPAKMFSN 512
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L + + G+ DE + K +P V+
Sbjct: 513 LKQALLDEGKNDEALNLARKINKLRGTPLVV 543
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 8/253 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN-ESCLD 109
V + + ++ F F ++ L+ +L +S +KA V DKM K +
Sbjct: 207 VEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVF----DKMKKRRFVPDIK 262
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y L+ GK N+ V+ M+ G +PD + LI A + A+ LF M
Sbjct: 263 SYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEM 322
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ KP Y I+G S + +++ + GF+ TY SL+ +
Sbjct: 323 -EAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMR 381
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D + +EM P+ + +L L ARR + F K G + + +
Sbjct: 382 IDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYE 441
Query: 289 KLVKCYCELGRVD 301
+V+ +C RVD
Sbjct: 442 IIVRMFCNEDRVD 454
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 8/234 (3%)
Query: 75 DALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
DA++ S+ + A L L + D MLK ++ + Y + + K +++ A +F M
Sbjct: 148 DAILVLNNMSNSQTALLALRYFQD-MLKSSKQTI-FYNVTLKVFRKCRDMEGAEKLFEEM 205
Query: 135 EAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
+G+KPD+ F+++I CA LCS A+ FE M S + P+ TY I + G
Sbjct: 206 INRGVKPDNVTFSTIISCARLCSLPS-KAVEWFEKM-PSFDCNPDDVTYSTMIDAYGRAG 263
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
NVD Y + ++ T+ ++I A ++D YEEM ++GI P++ I
Sbjct: 264 NVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYN 323
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L+ + ++ ++K+ K ++ G+ + L++ Y GR E+ L
Sbjct: 324 CLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAY---GRARYGEDAL 374
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ G+ + A+ V+ M+ +G++ + ++N+L+ C G V A+ +F+ M
Sbjct: 357 YASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMK 416
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+S T+ + I+ +S G V + + AGF N+ SLI KA+
Sbjct: 417 SSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRV 476
Query: 231 DSVDRFYEEMMSLGIIP 247
D V R + +++ LG+ P
Sbjct: 477 DDVVRTFNQLIELGLTP 493
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 6/245 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I G+ NV A ++ + + D A F+++I +G+ L+++E M
Sbjct: 252 YSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEM- 310
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPN Y+ + + Y I GFS + TY SL+ +AR
Sbjct: 311 KAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYG 370
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL--DRVKSFLKFLLGGGWKINENMAQ 288
+ Y+EM G+ ++ IL L +CA + V+ F G +
Sbjct: 371 EDALIVYKEMKEKGLQLNV-ILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFS 429
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
++ Y G+V E EE L + + P + + + +I+ Y + R+DDV + ++
Sbjct: 430 SMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFV--LTSLIQCYGKAKRVDDVVRTFNQLI 487
Query: 349 KQGLS 353
+ GL+
Sbjct: 488 ELGLT 492
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 10/226 (4%)
Query: 91 LVLEWRLDKMLK--------GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
LV+ RLDK ++ E + Y CLI + + AM + M +G PD
Sbjct: 277 LVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPD 336
Query: 143 SAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+ +++ LC + + L E M+ P+ TY+ F+ S G+ D ++
Sbjct: 337 KISYYTVM-GFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEF 395
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
F V+ Y +++H + D EM S G IP + V+ GLC
Sbjct: 396 LREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 455
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
RK+D+ K L+ + G K N L+ C+ G E E +
Sbjct: 456 ERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMM 501
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD + S+I LC V + KPN+ +Y A +
Sbjct: 427 AKEIVNEMFSKGCIPDVVTYTSVING-LCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 485
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G GN + + + N TY L+HG + EM+ G
Sbjct: 486 NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF 545
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + +++ LC K+D K F++ L G +N ++ +C+ ++
Sbjct: 546 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSL 605
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L+ + N+ P+V+ ++ II R+++ +M + GL
Sbjct: 606 LDDMYLSNKHPDVVT--YTTIIDALGKKGRIEEATKLAMKMLRVGL 649
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 130/304 (42%), Gaps = 13/304 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++N AM V T M+ GI+PD ++ N+ I + + A+ E M E +P
Sbjct: 245 AGKLRN---AMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM-QIVEIEP 300
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G+ L ++ + A G S + +Y +++ K + V
Sbjct: 301 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 360
Query: 238 EEMMS-LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E+M+ ++P + L D FL+ +++++ +V +C
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
GR+D+ +E + + P+V+ ++ +I ++D + + +M K G +
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVT--YTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 478
Query: 357 AEDVEMVICSYFRCAAYDRLDL--FLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSV 413
++ C + L+ ++ + + + A TY L+ G+RR G S + +
Sbjct: 479 VSYTALL---NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDL 535
Query: 414 INEM 417
+ EM
Sbjct: 536 VREM 539
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F ++I D+ ALSL + M S ++ P+ TY I G ++ K
Sbjct: 586 FTTVIHGFCQKDDLEAALSLLDDMYLSNKH-PDVVTYTTIIDALGKKGRIEEATKLAMKM 644
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G TY ++IH + + + + E+M+S + +V+E LC+ L
Sbjct: 645 LRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSFGNL 702
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ L +L KI+ N L++ Y G
Sbjct: 703 EQAYKLLGKVLRTASKIDANTCHMLIESYLSKG 735
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A+ M ++G PD +N+++ A G V A+ + +SS+ P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN-QLSSKGCSPVL 449
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G + G K A + TY SL+ G + D +F+ E
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+GI P+ ++ GLC R+ DR FL F++ G K NE L++ G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Query: 300 VDELEEQLETLTKCNQS 316
E E L L CN+
Sbjct: 570 AKEALELLNEL--CNKG 584
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 4/194 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +E G PD +N +I +G++ ALS+ + M S P+ TY+ +
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTIL 211
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + + +V TY LI + + + +EM G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G+C +LD FL + G + N +++ C GR + E+
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 307 LETLTKCNQSPEVL 320
L + + SP V+
Sbjct: 332 LADMLRKGFSPSVV 345
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 11/298 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ AM V M + PD + LI A V A+ L + M P
Sbjct: 217 SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGCTP 272
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ ++G G +D K+ ++G NV T+ ++ + ++
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G PS+ ++ LC + L R L+ + G + N L+ +C+
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++D E LE + P+++ ++ ++ +++D + ++ +G S
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVT--YNTMLTALCKDGKVEDAVEILNQLSSKGCS-PVL 449
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVI 414
VI + + LD ++ K TY LV G R GK+D I
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR---EGKVDEAI 504
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 144/334 (43%), Gaps = 35/334 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV A+ + ++ + ++ ++ ++N++I V A L+ MV
Sbjct: 163 YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMV 222
Query: 171 SSEEYKPNSKTYDAFISGFSSLGN----VDAMNKWYAANIAA-GFSVNVQTYESLIHGSL 225
S + PN TY A ISGF +G +D NK NI G++ N+ L+ G
Sbjct: 223 S-KGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI-----LVDGFC 276
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K R + MM GIIP + +++G C ++++ KS + GG +
Sbjct: 277 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIR 336
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C++ +VD+ + N P V+ ++ +I + S R+ V
Sbjct: 337 SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVT--YNSLIDGLSKSGRISYALQLVD 394
Query: 346 RMGKQGLS-------------FKSAE-DVEMVICSYFR-------CAAYDRLDLFLDHIK 384
+M +G+ FK+ + D + + + F+ Y L L ++
Sbjct: 395 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVE 454
Query: 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
G Y + TY+ ++ G+ + GL + S++++MK
Sbjct: 455 G-YDITVNTYNVMIHGFCKKGLFDEALSLLSKMK 487
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 102 KGNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
KG + Y+ LI+ + GK+++ A+ +F + + IKPD FN L+
Sbjct: 224 KGISPNVVTYSALISGFFVVGKLKD---AIDLFNKIILENIKPDGYTFNILVDGFCKDRK 280
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ ++F +M+ + P+ TY++ + G+ + V+ + G + ++++Y
Sbjct: 281 MKEGKTVFAMMM-KQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYN 339
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
LI+G K + D + EM IIP++ +++GL
Sbjct: 340 ILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 380
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 21/189 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K++ V AM++F M + I P+ +NSLI SG + AL L + M
Sbjct: 338 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQM- 396
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAA----------------GF 210
PN TY++ I VD + K+ I G+
Sbjct: 397 HDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGY 456
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+ V TY +IHG K FD +M IP+ E + L + D+ +
Sbjct: 457 DITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEK 516
Query: 271 FLKFLLGGG 279
+ ++ G
Sbjct: 517 LFREMITRG 525
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL----- 165
Y LI K + +A+ + M +G+ P+ +NS+I A + V A++L
Sbjct: 373 YNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFK 432
Query: 166 ----------FEIMVSS----EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+ I++ E Y TY+ I GF G D + +
Sbjct: 433 DQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCI 492
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
N TYE I L + D ++ + EM++ G++
Sbjct: 493 PNAVTYEITIRSLLDNNENDKAEKLFREMITRGLL 527
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ NV AM +F ++G PD+ ++ ++I +G + A S+ M
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +K ++K Y+ I+GF + + G +V TY +L+ GS KA DF
Sbjct: 381 EAG-FKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+VD +M+ G PS+ ++ G C K+D L+ + G N + L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499
Query: 291 VKCYCELGRVD 301
+ C+ G VD
Sbjct: 500 IDFLCKRGDVD 510
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K ++ +++L+ A L + +V A+ LF +S E + P++ Y ISG + G ++
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMS-EGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
++ AGF ++ + Y LI G + + +EM +GI P + +L G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C V L ++ G + + LV YC++G++DE L ++ + P
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493
Query: 320 LLH 322
+++
Sbjct: 494 VIY 496
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + + A + M+ GI+PD +N+L+ +GD L M+
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ T+ + G+ +G +D + + +G N Y +LI K D
Sbjct: 451 D-DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D ++EM + ++ +L+GL
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 62/316 (19%), Positives = 127/316 (40%), Gaps = 20/316 (6%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
++A +V++VP ++ M+ ++PD + L+ +G V AL + + M
Sbjct: 142 ILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQ 201
Query: 173 E-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARD 229
+ + +P+ T + + G G V + +++ G N TY LI + +
Sbjct: 202 DLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGN 261
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL-----LGGGWKINE 284
E+M + G+ +I L ++ GLC + R + L+F + K N
Sbjct: 262 ISMAYELVEKMENEGVPQNIVTLNTIVGGLC---RAGRTGAALEFFREKRTVWPEGKGNA 318
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRLYALSDRLDDVEY 342
LV V E SP+ +++F SG+ + + RL+D
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ----AGRLEDACS 374
Query: 343 SVGRMGKQGLSFKSAEDVEMVICSYFRCAA-YDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
M + G + + ++I + R ++ +L + + + TY+ L++G
Sbjct: 375 MASSMKEAGFKLDT-KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 402 RRAGLSGKLDSVINEM 417
+AG +D ++ +M
Sbjct: 434 CKAGDFAAVDELLGKM 449
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 11/297 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ + + N + ++++ L+ +L + K+A+ VL L +K + + Y+ L+
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD---VITYSTLMDG 313
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYK 176
V V A HVF +M G+ PD + LI C +V AL+LF+ M +
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING-FCKNKMVDEALNLFKEM-HQKNMV 371
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P TY + I G G + + G +V TY SLI G K D
Sbjct: 372 PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL 431
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M I P+I +L+GLC +L + + LL G+ +N ++ +C+
Sbjct: 432 FNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
G LEE L L+K + + F F II D D E + +M +GL
Sbjct: 492 QGL---LEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 141/358 (39%), Gaps = 15/358 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F +Q S+ LI + +A + ++D L + + Y +I K Q V
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVM--YNTIIDAMCKYQLVS 216
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F+ M +GI D +N+LI G + A+ L MV + PN TY+
Sbjct: 217 EAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMV-LKTINPNVYTYNIL 275
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G V A + A +V TY +L+ G + + M +G+
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV 335
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + ++ G C + +D + K + L+ C+ GR+ + +
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD 395
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL-----SFKSAEDV 360
++ + Q +V+ +S +I + LD +M Q + +F D
Sbjct: 396 LIDEMRDRGQPADVIT--YSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD- 452
Query: 361 EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+C R D ++F D + Y L TY+ ++ G+ + GL + +++++M+
Sbjct: 453 --GLCKGGRLK--DAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 7/327 (2%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L RL+ LKG + L LI + + F V + +G PD+ N+LI
Sbjct: 81 LSHRLE--LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V AL + ++ ++ ++ N +Y I+G +G+ A K+
Sbjct: 139 LCLKGQVKKALHFHDKLL-AQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKP 197
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V Y ++I K + + EM GI + ++ G C KL L
Sbjct: 198 DVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 257
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ N LV C+ G+V E + L + K P+V+ +S ++ Y
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT--YSTLMDGYF 315
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRR 391
L + ++ M G++ ++I + + D L+LF + + +
Sbjct: 316 LVYEVKKAQHVFNAMSLMGVT-PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G ++G + +I+EM+
Sbjct: 375 VTYSSLIDGLCKSGRISYVWDLIDEMR 401
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 2/198 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIM 169
Y CLI + + AM + M +G PD + +++ LC + + L E M
Sbjct: 242 YNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVM-GFLCKEKRIKEVRLLMEKM 300
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+ TY+ F+ S G+ D ++ F V+ Y +++H +
Sbjct: 301 LKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGR 360
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D EM S G IP + V+ GLC RK+D+ K L+ + G K N
Sbjct: 361 MDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTA 420
Query: 290 LVKCYCELGRVDELEEQL 307
L+ C+ G E E +
Sbjct: 421 LLNGLCKNGNSLEAREMM 438
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 9/229 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD + S+I LC V + KPN+ +Y A +
Sbjct: 364 AKEIVNEMFSKGCIPDVVTYTSVING-LCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 422
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G GN + + + N TY L+HG + EM+ G
Sbjct: 423 NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF 482
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + +++ LC K+D K F++ L G +N ++ +C+ D+LE
Sbjct: 483 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQ---KDDLEAA 539
Query: 307 LETLTK---CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L L N+ P+V+ ++ II R+++ +M + GL
Sbjct: 540 LSLLDDMYLSNKHPDVVT--YTTIIDALGKKGRIEEATKLAMKMLRVGL 586
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 130/304 (42%), Gaps = 13/304 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++N AM V T M+ GI+PD ++ N+ I + + A+ E M E +P
Sbjct: 182 AGKLRN---AMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM-QIVEIEP 237
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G+ L ++ + A G S + +Y +++ K + V
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLM 297
Query: 238 EEMMS-LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E+M+ ++P + L D FL+ +++++ +V +C
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
GR+D+ +E + + P+V+ ++ +I ++D + + +M K G +
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVT--YTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 415
Query: 357 AEDVEMVICSYFRCAAYDRLDL--FLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSV 413
++ C + L+ ++ + + + A TY L+ G+RR G S + +
Sbjct: 416 VSYTALL---NGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDL 472
Query: 414 INEM 417
+ EM
Sbjct: 473 VREM 476
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F ++I D+ ALSL + M S ++ P+ TY I G ++ K
Sbjct: 523 FTTVIHGFCQKDDLEAALSLLDDMYLSNKH-PDVVTYTTIIDALGKKGRIEEATKLAMKM 581
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G TY ++IH + + + + E+M+S + +V+E LC+ L
Sbjct: 582 LRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSFGNL 639
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ L +L KI+ N L++ Y G
Sbjct: 640 EQAYKLLGKVLRTASKIDANTCHMLIESYLSKG 672
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 8/288 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++AL+ L ++ ++A ++E +DK + + + Y+ L+ K V A+ +
Sbjct: 260 TYNALVNGLCKADKMERAHAMIESMVDKGVTPD---VITYSVLVDAFCKASRVDEALELL 316
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M ++G P+ FNS+I LC D + V + P+ T++ I+G
Sbjct: 317 HGMASRGCTPNVVTFNSIIDG-LCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACK 375
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
GN + + + +A +V T+ +LI G KA ++ + M +LG+ P++
Sbjct: 376 AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 435
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC +++ FL+ ++ G LV C R D+ + + L
Sbjct: 436 YNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLK 495
Query: 312 KCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
P+ + + G+ + + +E VG+ G Q SF A
Sbjct: 496 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGK-GHQPDSFTFA 542
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 6/181 (3%)
Query: 127 AMHVFTS-MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ +F M G+ P +N++I S ++ + LFE +V + P+ TY+
Sbjct: 64 ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVK-RGHHPDVVTYNTL 122
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM--SL 243
I G+++ + + + G NV TY LI+G K D +EM S
Sbjct: 123 IDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 182
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--QKLVKCYCELGRVD 301
++P+I L+GLC + ++ L G +++ + L+ C+ G+ D
Sbjct: 183 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTD 242
Query: 302 E 302
E
Sbjct: 243 E 243
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 154 LC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC +G+ AL +F ++ + P TY+ I+G + A + + + G
Sbjct: 55 LCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHP 114
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V TY +LI KA D + R + M S G +P++ ++ GLC ++D + +
Sbjct: 115 DVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELI 174
Query: 273 K 273
+
Sbjct: 175 Q 175
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 35/198 (17%)
Query: 139 IKPDSAVFNSLI---CAC-----LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ PD+ F++LI C C C+ D++ Y PN TY+A ++G
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAG-----------GYVPNVVTYNALVNGLC 269
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
++ + + + G + +V TY L+ KA D M S G P++
Sbjct: 270 KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV 329
Query: 251 ILEKVLEGLCARRKLDR--------VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+++GLC K DR ++ + + L+ K+ N+ L+ C+ G ++
Sbjct: 330 TFNSIIDGLC---KSDRSGEAFQIALQVYNRMLVPD--KVTFNI---LIAGACKAGNFEQ 381
Query: 303 LEEQLETLTKCNQSPEVL 320
E + N P+V+
Sbjct: 382 ASALFEEMVAKNMQPDVM 399
>gi|255538676|ref|XP_002510403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551104|gb|EEF52590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ + K N F + + G +PD V+NS+I A + +G S M +
Sbjct: 424 ALVHMYSKAGNFDRTKEAFGRLRSHGFQPDIKVYNSMIMASVNAGQPKLGDSFVREM-EA 482
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ KP + Y A + F+ LG+V +K A AGF N++ Y L+ +A D
Sbjct: 483 RDIKPTEEMYFALLRSFAQLGDVSEAHKIATAMQFAGFQPNLEFYTLLVEAHGRAGQPDQ 542
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
R +++M+ +G P + ++ + LD L L G++ LV
Sbjct: 543 ARRNFDQMIKVGFRPDDRVAASLIAAYEKKNLLDEALDILLQLKKDGFEPGLATCTVLVD 602
Query: 293 CYCELGRVDELEEQLETLTKCNQSP 317
+L VDE E+ L + + ++P
Sbjct: 603 WLAKLQLVDEAEQLLGKIAEQGEAP 627
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 6/247 (2%)
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
L ++ T + E +++ + ++PN + Y I ++ ++ + + G +
Sbjct: 359 LKEKNMQTFFKVAEHLLNEKSFQPNIRDYSVLIDAHATKNQIEDVERILEKMNENGIFPD 418
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ +L+H KA +FD + + S G P I + ++ + SF++
Sbjct: 419 ISASTALVHMYSKAGNFDRTKEAFGRLRSHGFQPDIKVYNSMIMASVNAGQPKLGDSFVR 478
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ K E M L++ + +LG V E + + P L F++ ++ +
Sbjct: 479 EMEARDIKPTEEMYFALLRSFAQLGDVSEAHKIATAMQFAGFQPN--LEFYTLLVEAHGR 536
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEM-VICSYFRCAAYDR-LDLFLDHIKGSYKLRR 391
+ + D + +M K G F+ + V +I +Y + D LD+ L K ++
Sbjct: 537 AGQPDQARRNFDQMIKVG--FRPDDRVAASLIAAYEKKNLLDEALDILLQLKKDGFEPGL 594
Query: 392 ATYDFLV 398
AT LV
Sbjct: 595 ATCTVLV 601
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ +L W + G + Y LI K + A+ +F M +G+ PD A +N
Sbjct: 142 KAKELLNWMWGQ---GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYN 198
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI GD++ A ++E ++ PN +Y+ I+G G D + +
Sbjct: 199 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 258
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
++ TY +LIHG + + D R Y+EM G+ P + + +L G + R
Sbjct: 259 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL---RAGR 315
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCY 294
++ L+ WK+ E + V Y
Sbjct: 316 IEECLEL-----WKVMEKEGCRTVVSY 337
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 5/222 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ ++ LD + + + +A+I +S K + L + + + KG + Y
Sbjct: 420 LDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRAS--KLEDALRFFGNMVSKGCFPTVVTY 477
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMV 170
LI K + A + M +G KP+ + SL+ LC G + AL+L+
Sbjct: 478 NTLINGLSKAERFSEAYALVKEMLQKGWKPNMITY-SLLMNGLCQGKKLDMALNLW-CQA 535
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +KP+ K ++ I G S G V+ + Y+ N+ T+ +L+ G K RDF
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + ++ ++ G+ P I L+GLC+ ++ FL
Sbjct: 596 ERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFL 637
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 3/226 (1%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
++L + C D + + G +N + A+ + E D+ ++S+I
Sbjct: 358 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 417
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + + + M + KPN +A I+GF ++ +++ ++ G V T
Sbjct: 418 GRLDEVAGVLDQM-TKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 476
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI+G KA F +EM+ G P++ ++ GLC +KLD + L
Sbjct: 477 YNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 536
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G+K + M ++ C G+V++ + + + N P ++ H
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 8/210 (3%)
Query: 97 LDKMLKGNESC-LDEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
LD+M K C + Y C ++G V+ + A+ F +M ++G P +N+LI
Sbjct: 427 LDQMTK--HGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGL 484
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSV 212
+ A +L + M+ + +KPN TY ++G +D A+N W A + GF
Sbjct: 485 SKAERFSEAYALVKEMLQ-KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA-LEKGFKP 542
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V+ + +IHG + + + Y EM +P++ ++EG R +R
Sbjct: 543 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIW 602
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L G + + +K C R+ +
Sbjct: 603 DHILQYGLQPDIISYNITLKGLCSCHRISD 632
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI +S + + A + M QG PD + +LI + +G + AL LF+
Sbjct: 124 LQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFD 183
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M P+ Y+ I GF G++ +A W N+ +Y +I+G K
Sbjct: 184 EM-PERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 242
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
FD + M + ++ GLC LD K + G + +
Sbjct: 243 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 302
Query: 287 AQKLVKCYCELGRVDELEEQLETLTK 312
++ Y GR++E E + + K
Sbjct: 303 YNTMLNGYLRAGRIEECLELWKVMEK 328
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y+ L+ + + + A++++ +G KPD + N +I SG V
Sbjct: 503 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED 562
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL L+ M PN T++ + GF + + + +K + + G ++ +Y +
Sbjct: 563 ALQLYSEM-KQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITL 621
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
G F + + G++P+ +++G A
Sbjct: 622 KGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLA 661
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 121/287 (42%), Gaps = 16/287 (5%)
Query: 127 AMHVFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+H+F + + I +P+ ++ +++ G A L +M KPN++TY
Sbjct: 161 AVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGST-KPNTRTYTIV 219
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F G +D ++ TY +LI K +++V + EM+ L I
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ V++GLC K++ + +++++ G + ++ Y G+VD E
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
+++ + P+++ ++ +I YA ++D+ + ++GL S +++
Sbjct: 340 IFDSMINKSIEPDII--SYNILINGYARQKKIDEAMQVCREISQKGLK-PSIVTCNVLLH 396
Query: 366 SYFRCAAYDRLDLFLD------HIKGSYKLRRATYDFLVAGYRRAGL 406
F F D HI Y T+ L+ GY + GL
Sbjct: 397 GLFELGRTKSAQNFFDEMLSAGHIPDLY-----THCTLLGGYFKNGL 438
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV++ A + M +G+ PD +N +I G V A +F+ M++ + +P+
Sbjct: 297 GKVED---AEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN-KSIEPD 352
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+Y+ I+G++ +D + G ++ T L+HG + S F++
Sbjct: 353 IISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFD 412
Query: 239 EMMSLGIIP-----------------------------------SIPILEKVLEGLCARR 263
EM+S G IP +I I V++GLC
Sbjct: 413 EMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNG 472
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL--TKCNQSPEVLL 321
KLD+ + + L G + ++ YC+ G +DE ++ L + C
Sbjct: 473 KLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRT-- 530
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++ I+R + S+++ +++ + + + SF++A
Sbjct: 531 --YNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAA 564
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 121/333 (36%), Gaps = 50/333 (15%)
Query: 98 DKMLKGNESCLDE------------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
D ML G S L+E Y+ LI K+ +F M I P+
Sbjct: 226 DGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCT 285
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
FNS+I G V A + M+ + P+ TY+ I G+ G VD + + +
Sbjct: 286 FNSVIDGLCKEGKVEDAEEIMRYMIE-KGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
I ++ +Y LI+G + + D + E+ G+ PSI +L GL +
Sbjct: 345 INKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRT 404
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
++F +L G + L+ Y + G V+E L + + + ++
Sbjct: 405 KSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI--QIYT 462
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG 385
+I + +LD + ++ GL DV
Sbjct: 463 AVIDGLCKNGKLDKAHATFEKLPLIGLH----PDV------------------------- 493
Query: 386 SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY +++GY + GL + ++ +M+
Sbjct: 494 ------ITYTAMISGYCQEGLLDEAKDMLRKME 520
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 117/264 (44%), Gaps = 5/264 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ ++ + A+ + M+ QG+ P S N ++ + SG + A ++F+ M S
Sbjct: 175 CMLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEM-SV 233
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S ++ + G G + ++W + I GF + T ++ + +
Sbjct: 234 RGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNR 293
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +M+ LG P++ +++GLC + + + L+ ++ GWK N L+
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 353
Query: 293 CYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G ++ L + + P V H ++ +I Y D+L+ E RM +QG
Sbjct: 354 GLCKRGWTEKAFRLFLKLVRSDIYKPNV--HTYTSMIGGYCKEDKLNRAEMLFSRMKEQG 411
Query: 352 LSFKSAEDVEMVICSYFRCAAYDR 375
L F + +I + + +DR
Sbjct: 412 L-FPNVNTYTTLINGHCKAGNFDR 434
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 4/208 (1%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C + LS +N V A+ F M G KP+ F SLI G + A +
Sbjct: 274 DNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEML 333
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSL 225
E MV + +KPN T+ A I G G + + + + + + NV TY S+I G
Sbjct: 334 EEMVRNG-WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYC 392
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + + + M G+ P++ ++ G C DR + + G++ N
Sbjct: 393 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIY 452
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKC 313
++ C+ R E E L C
Sbjct: 453 TYNAVIDSLCKKSRAPEAYELLNKAFSC 480
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 1/171 (0%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W KM+ G + L + LI K ++ A + M G KP+ +LI
Sbjct: 296 WYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 355
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V S+ YKPN TY + I G+ ++ ++ G N
Sbjct: 356 CKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPN 415
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
V TY +LI+G KA +FD M G P+I V++ LC + +
Sbjct: 416 VNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 6/232 (2%)
Query: 72 FSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
++ ALI L + + K +L L+ + K N + Y +I K + A
Sbjct: 346 YTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPN---VHTYTSMIGGYCKEDKLNRAEM 402
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F+ M+ QG+ P+ + +LI +G+ A L +M E ++PN TY+A I
Sbjct: 403 LFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLM-DDEGFRPNIYTYNAVIDSL 461
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ + G + TY LI K D F+ M G +
Sbjct: 462 CKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADM 521
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ ++ C ++K+ + + ++ G + ++ YC+ G D
Sbjct: 522 RLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFD 573
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 1/177 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K P A + + G++ D + LI D+ AL+ F M + ++ +
Sbjct: 463 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRM-NKTGFEADM 521
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ + I+ F + + + ++ G +TY S+I G K DFD +++
Sbjct: 522 RLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHN 581
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M G +P ++ GLC + +D + ++ G E L YC+
Sbjct: 582 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 638
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 8/204 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y+CL+ + NV AM +F M+ + I+P+ ++SL+ +G +
Sbjct: 220 KGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L E+MV + +KPN TY I+G G + + G + Y +I
Sbjct: 280 AMELLEMMVR-KRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKII 338
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPS-------IPILEKVLEGLCARRKLDRVKSFLKF 274
+G R F + +EM+ I P+ + + V++GLC L+R
Sbjct: 339 NGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIG 398
Query: 275 LLGGGWKINENMAQKLVKCYCELG 298
+ G I+ LVKC+C+ G
Sbjct: 399 MRTRGISIDAGTFDSLVKCFCKKG 422
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y + A+ + + AM + M G++ N LI A C SG + A +F M
Sbjct: 123 YISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREM 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
P+S TY I+G LG + + G S +V TY L+HG +A +
Sbjct: 183 -PKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGN 241
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +++M I P++ +++GLC L+ ++ K N
Sbjct: 242 VDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYST 301
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ C+ G++ E E L+ + P+ L+
Sbjct: 302 LINGLCKEGKLAEAVETLDRMKLQGLKPDAGLY 334
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 13/246 (5%)
Query: 29 NTNTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSP 86
+T S SV + + L+ L Q V + D + A + F++ +L+ L ++
Sbjct: 218 DTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGS 277
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+A +LE + K K N + Y+ LI K + A+ M+ QG+KPD+ ++
Sbjct: 278 LEAMELLEMMVRKRHKPN---MVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLY 334
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY-------DAFISGFSSLGNVDAMN 199
+I A + + MV + PN T+ + + G + GN++
Sbjct: 335 GKIINGFCNIRKFQEAATYLDEMVLGQ-ISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSF 393
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ Y G S++ T++SL+ K D R ++EM+ G +P I V+ G
Sbjct: 394 QLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGF 453
Query: 260 CARRKL 265
RRK+
Sbjct: 454 WDRRKV 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 1/202 (0%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
AL + A +F M +G PDS + +LI G A LF+ M ++
Sbjct: 164 ALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEM-DTKGC 222
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ TY + G GNVD + NV TY SL+ G K
Sbjct: 223 SPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAME 282
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
E M+ P++ ++ GLC KL L + G K + + K++ +C
Sbjct: 283 LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342
Query: 296 ELGRVDELEEQLETLTKCNQSP 317
+ + E L+ + SP
Sbjct: 343 NIRKFQEAATYLDEMVLGQISP 364
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 10/199 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ A +F M+ +G P ++ L+ +G+V A+ LF+ M
Sbjct: 194 YGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKM- 252
Query: 171 SSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +PN TY + + G + G+++AM + + N+ TY +LI+G K
Sbjct: 253 KKKAIEPNVFTYSSLMDGLCKNGGSLEAM-ELLEMMVRKRHKPNMVTYSTLINGLCKEGK 311
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-------GWKI 282
+ M G+ P + K++ G C RK ++L ++ G W +
Sbjct: 312 LAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSL 371
Query: 283 NENMAQKLVKCYCELGRVD 301
+ + +V+ C G ++
Sbjct: 372 HVKLNNMVVQGLCTNGNLN 390
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 10/254 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIAL 117
D V F Q S+ LI L + KA RL + L+G+ D Y +I
Sbjct: 187 DKVVAQGFQLDQVSYGTLINGLCKAGETKAV----ARLLRKLEGHSVKPDVVMYTTIIHC 242
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + V A +++ M +GI P+ +N+LI G++ A SL M + P
Sbjct: 243 LCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEM-KLKNINP 301
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ T++ I G +D + N+ TY SLI G K +
Sbjct: 302 DVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 361
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE- 296
++M GI P + +L+ LC +L+ K F + LL G+ +N ++ C+
Sbjct: 362 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKA 421
Query: 297 --LGRVDELEEQLE 308
G V +L+ ++E
Sbjct: 422 GLFGDVMDLKSKME 435
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 127/308 (41%), Gaps = 9/308 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSS 172
LI + ++ FA VF ++ +G PD+ N+LI C C G++ AL F V +
Sbjct: 134 LINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFC-GEIKRAL-YFHDKVVA 191
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ ++ + +Y I+G G A+ + +V Y ++IH K +
Sbjct: 192 QGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGD 251
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
Y EM+ GI P++ ++ G C L S L + + L+
Sbjct: 252 ACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILID 311
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ G++DE E + N P ++ ++ +I + L+ +M +QG+
Sbjct: 312 ALGKEGKIDEAISLFEEMKHKNMFPNIVT--YTSLIDGLCKNHHLERAIALCKKMKEQGI 369
Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDH--IKGSYKLRRATYDFLVAGYRRAGLSGKL 410
+++ + + + F H +KG Y L TY+ ++ G +AGL G +
Sbjct: 370 Q-PDVYSYTILLDALCKGGRLENAKQFFQHLLVKG-YHLNVRTYNVMINGLCKAGLFGDV 427
Query: 411 DSVINEMK 418
+ ++M+
Sbjct: 428 MDLKSKME 435
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 3/199 (1%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D+Y + ++G K +V A+ V M +G PD +NSLI G+V A+ +
Sbjct: 300 DKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVL 359
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M+ + PN+ TY+ IS V+ K G +V TY SLI G
Sbjct: 360 NQMIE-RDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+R+ Y+EM + G P +++ LC R KL + LK + G N
Sbjct: 419 SRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVIT 478
Query: 287 AQKLVKCYCELGRVDELEE 305
L+ +C+ R+ E EE
Sbjct: 479 YNTLIDGFCKNKRIAEAEE 497
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 6/194 (3%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGF 189
++M ++GI+PD + FN LI A + + A+ L E M E++ P+ KT+ + GF
Sbjct: 184 SNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEM---EDFGLLPDEKTFTTIMQGF 240
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM-MSLGIIPS 248
GN+D + + AG V T L++G K + RF EEM + G P
Sbjct: 241 IEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPD 300
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
++ GL + + +L G+ + L+ C+LG VDE + L
Sbjct: 301 KYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLN 360
Query: 309 TLTKCNQSPEVLLH 322
+ + + SP + +
Sbjct: 361 QMIERDCSPNTVTY 374
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V A + M +G++PD +NSL+ +GD+ A + + M
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM- 572
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S+ +P+ TY I+G G V+A K G ++ Y +I + +
Sbjct: 573 ASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRS 632
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
R + EM+ P + V GLC
Sbjct: 633 KEAVRLFREMIEKAEAPDAVTYKIVFRGLC 662
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%)
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + AL E M E + P+ T++ ++G S G+V + + GF ++ T
Sbjct: 279 GRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYT 338
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y SLI G K + D + +M+ P+ ++ LC +++ L
Sbjct: 339 YNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLT 398
Query: 277 GGG 279
G G
Sbjct: 399 GKG 401
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 4/204 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A+++ ME G + +N+LI + + A +F+ M + N
Sbjct: 455 GKLQE---ALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQM-ELQGVSRN 510
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
S TY+ I G V+ ++ I G + TY SL+ KA D +
Sbjct: 511 SVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQ 570
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G P I ++ GLC +++ L+ + G + + +++
Sbjct: 571 TMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRK 630
Query: 299 RVDELEEQLETLTKCNQSPEVLLH 322
R E + + ++P+ + +
Sbjct: 631 RSKEAVRLFREMIEKAEAPDAVTY 654
>gi|393215295|gb|EJD00786.1| hypothetical protein FOMMEDRAFT_125211 [Fomitiporia mediterranea
MF3/22]
Length = 1438
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 118/290 (40%), Gaps = 48/290 (16%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
N S ++ ALI ++ ++ A + W +M +G + L Y +I+ + + FA
Sbjct: 1044 NPSPDAYGALIQCVRETTDDSANALALWHESQM-RGVVANLYLYNTVISKLSRARKADFA 1102
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ +F M+A ++P S + ++I AC GD +A LFE M S + +KP Y+ I
Sbjct: 1103 LELFQQMKANFVRPSSVTYGAVIAACCRVGDAQSAEVLFEEMTSQKNFKPRIPPYNTMIQ 1162
Query: 188 GFSSL-GNVDAMNKWYAANIAAGFSVNVQTYESLI--HGSLKARD--------------- 229
++ + + + ++ +A+G TY+ LI +G+++ D
Sbjct: 1163 FYTHIVRDRERALHYFGLLLASGIKPTAHTYKLLIDSYGTIEPTDLVSMEDVFLQLTKDK 1222
Query: 230 -----------------------------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
FDS+ S ++P + E ++ L
Sbjct: 1223 RVQVQGVHWAALINAWGCIQKDLNRAISIFDSIASHPTTQRSGLVLPDAIVYESMINVLV 1282
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
R+ D + S+L+ L G + +A L+K Y G ++ E E L
Sbjct: 1283 TLRRTDLIPSYLERLSASGIHMTAYIANLLIKGYAIAGDLERAREVFEGL 1332
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 129/287 (44%), Gaps = 14/287 (4%)
Query: 39 SSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRL 97
S N ++ RL + + + +S N + ++ +LI L KK ++ +RL
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLG----KKGKIDDAYRL 477
Query: 98 -DKMLK-GNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+KML G+++ Y LI + G+ ++ ++ M +G +PD + N+ +
Sbjct: 478 FEKMLDAGHDANPIIYTSLIRNFFMHGRKED---GHKIYKEMIRRGGRPDLTLLNTYMDC 534
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+G+V ++FE M S + P+ ++Y I G + G + + A GF++
Sbjct: 535 VFKAGEVEKGRAIFEDM-KSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFAL 593
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + Y +++ G K+ D EEM + P++ +++GL +LD
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLF 653
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ G ++N + L+ + ++GR+DE LE + K +P V
Sbjct: 654 EEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 700
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 41/305 (13%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S S+++++T L L L + K K N S + ++ ++G+V A
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNE---AYK 406
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ ME G+ P+ N ++ + + A +FE S PNS TY + I G
Sbjct: 407 IRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFE-SASERGCNPNSVTYCSLIDGL 465
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-----HGS-------------------- 224
G +D + + + AG N Y SLI HG
Sbjct: 466 GKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDL 525
Query: 225 ----------LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
KA + + +E+M S G +P + ++ GL + + +
Sbjct: 526 TLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQA 585
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+ G+ ++ +V C+ G+VD+ E LE + + P V + I+ A
Sbjct: 586 MSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT--YGSIVDGLAKI 643
Query: 335 DRLDD 339
DRLD+
Sbjct: 644 DRLDE 648
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 6/180 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y+ LI GKV + A + M +G+ P+ +NSL+ A + + ++
Sbjct: 659 KGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDE 718
Query: 162 ALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL F+ M +E K PN+ TY I+G + + ++ G NV TY +
Sbjct: 719 ALICFQSM---KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTT 775
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGG 278
+I G K + +E + G IP ++EG+ A R ++ + F + L G
Sbjct: 776 MISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 86/215 (40%), Gaps = 2/215 (0%)
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
C Y +I G + A + + +G P FNS++ V AL+LF
Sbjct: 315 CAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLF 374
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
++M ++ KPN TY+ I G V+ K AG N+ + ++ K
Sbjct: 375 DVM--KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCK 432
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A + R +E G P+ +++GL + K+D + +L G N +
Sbjct: 433 ANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPII 492
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L++ + GR ++ + + + + P++ L
Sbjct: 493 YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTL 527
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 43/230 (18%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE----YACLIALSGKVQNVPFAMHVFT 132
L T+L + ++ Q+ L +KG SCL+ Y I GK +V A F
Sbjct: 213 LFTTLVRALAREGQMEPALALVDEVKG--SCLEPDIVLYNVCIDCFGKAGSVDMAWKFFH 270
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++A G++PD + S++ +G + A LF M +E P + Y+ I G+ S
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQM-EAERDVPCAYAYNTMIMGYGS- 328
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
A FD + E + G IPS+
Sbjct: 329 ----------------------------------AERFDDAYKLLERLRERGCIPSVVSF 354
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L L +RK+D + ++ K N + ++ C GRV+E
Sbjct: 355 NSILTCLGKKRKVDEALTLFD-VMKKDAKPNISTYNIIIDMLCMAGRVNE 403
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 2/206 (0%)
Query: 98 DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+K G + L Y+ LI K++ A V +G P+ V+N+LI
Sbjct: 305 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 364
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G++ AL + MVS + PNS T ++ I GF +G ++ ++ GFS+N
Sbjct: 365 GNLGDALRIRGDMVS-KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGA 423
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++IH F+S RF EM+ + P+ +L ++ GLC K LL
Sbjct: 424 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 483
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ N L+ C+ G + E
Sbjct: 484 EKGFGANLVTTNALIHGLCKTGNMQE 509
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 4/239 (1%)
Query: 60 DSVDIFAF--NSSQFSWDALITSLQSSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIA 116
+++ +F F N F T L SS K +L W + M +G + ++ I
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 254
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K V A+ +F ME G+ P+ +N+LI G++ A E MV +
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK-DGVN 313
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
TY I+G L + N + GF+ N Y +LI G K + R
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI 373
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+M+S GI P+ L +++G C ++++ + L+ +L G+ IN ++ C
Sbjct: 374 RGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 432
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 8/241 (3%)
Query: 120 KVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +NV F A+ VF + +G+ P L+ + + + ++ + +FE M + P
Sbjct: 187 QFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETM--RQGVSP 244
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ + I+ F G V+ + + G S NV TY +LIHG K + D RF
Sbjct: 245 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 304
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+ G+ ++ ++ GL K + S LK L G+ NE + L+ YC++
Sbjct: 305 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 364
Query: 298 GRV-DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G + D L + + ++K V L + II+ + +++ E + M +G S
Sbjct: 365 GNLGDALRIRGDMVSKGINPNSVTL---NSIIQGFCKIGQMEQAECILEEMLSRGFSINP 421
Query: 357 A 357
Sbjct: 422 G 422
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 7/293 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ++ + +G + N+LI +G++ A+ L + M+ + + TY+ I
Sbjct: 475 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE-RGFVLDKITYNTLI 533
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG G V+ K + G + TY LIHG + D + E S ++
Sbjct: 534 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 593
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++G C K++ + LL ++N + L++ YC G E +
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P +S +I R++D + + M K+GL + +I
Sbjct: 654 HDDMRSKGIPPTTAT--YSSLIHGMCNIGRMEDAKCLIDEMRKEGL-LPNVVCYTALIGG 710
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + D++ L + SY + + TY ++ GY ++G +++EM
Sbjct: 711 YCKLGQMDKVVNVLQEMS-SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 762
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 12/179 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N A + M ++GI P +A ++SLI G + A L + M
Sbjct: 634 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM- 692
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN Y A I G+ LG +D + + N TY +I G K+ D
Sbjct: 693 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + EM+ GI+P + G C K++ G+KI + M+Q+
Sbjct: 753 KTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE-----------GFKICDYMSQE 800
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG Y+ LI + + A + M +G+ P+ + +LI G +
Sbjct: 660 KGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDK 719
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+++ + M SS + PN TY I G+S G++ K + G + TY L
Sbjct: 720 VVNVLQEM-SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLT 778
Query: 222 HGSLK 226
+G K
Sbjct: 779 NGFCK 783
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 112/253 (44%), Gaps = 7/253 (2%)
Query: 60 DSVDIFAFNSSQFSWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D +D + +W++LI L + AQL E + N + Y LI
Sbjct: 243 DRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVT----YTTLIDG 298
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ N+ A+ + MEA G+ P A +N+++ LC + ++ + + +
Sbjct: 299 YCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRK-LCEDGKMKEVNQLLNEMDERKVQA 357
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ T + I+ + G++ + K + +G +N TY++LIHG KA++ D +
Sbjct: 358 DHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAF 417
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G P+ + +++G C + D V L+ G ++ + + L++ C
Sbjct: 418 FQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRK 477
Query: 298 GRVDELEEQLETL 310
G VD+ ++ + +
Sbjct: 478 GLVDQAQKVFDQM 490
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K AM V M+ +GI+ D+ +NSLI G V A LF M
Sbjct: 222 YNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMA 281
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+++ P++ TY I G+ GN++ K A G V TY +++ +
Sbjct: 282 AAQA-TPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKM 340
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
V++ EM + ++ C R + K ++ G ++N+ + L
Sbjct: 341 KEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKAL 400
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ +DE +E + SP FS ++ + + D V + K+
Sbjct: 401 IHGFCKAKELDEAKEAFFQMVDAGFSPN--YSVFSWLVDGFCKKNNADAVLLIPDELMKR 458
Query: 351 GL 352
GL
Sbjct: 459 GL 460
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 47/293 (16%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHV 130
SW L+ + QS+ P A V + ++ D +AC L+ + + A V
Sbjct: 118 SWLVLVLA-QSARPHDALRVFD-----QMRARGLAPDAHACTALLTALARARMTATARRV 171
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL------------------------- 165
F M G+ + V+N+++ CL +GD A +L
Sbjct: 172 FDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCK 231
Query: 166 ----FEIM-----VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+E M + E + ++ T+++ I G G V + + AA + + T
Sbjct: 232 KGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVT 291
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI G +A + + + EM + G++P + +L LC K+ V L +
Sbjct: 292 YTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMD 351
Query: 277 GGGWKINENMAQKLVKCYCELGRVDEL----EEQLETLTKCNQ-SPEVLLHFF 324
+ + L+ YC+ G + ++ +E+ + NQ + + L+H F
Sbjct: 352 ERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGF 404
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 156/353 (44%), Gaps = 16/353 (4%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFA--M 128
+++ LI + SS + + L +KM + G L Y ++ + GK+ +P++
Sbjct: 194 YAYTCLINAYSSSGRYRDAVNL---FNKMQQDGCNPTLITYNVVLNVYGKM-GMPWSNVT 249
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ +M ++G+ PD +N+LI C A+ LF+ M E + P+ TY+A +
Sbjct: 250 ALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQM-KLEGFTPDKVTYNALLDV 308
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F K A GFS TY SLI K + +M+ GI P
Sbjct: 309 FGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPD 368
Query: 249 IPILEKVLEGLCARRKLD-RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +L G K D ++ FL+ + G K N L+K + G+ E+ +
Sbjct: 369 VFTYTTLLSGFEKAGKDDFAIQVFLE-MRAVGCKPNICTFNALIKMHGNRGKFAEMMKVF 427
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMVICS 366
+ + CN SP+++ ++ ++ ++ + V M + G F + D +I +
Sbjct: 428 DDIKLCNCSPDIVT--WNTLLAVFGQNGMDSQVSGIFKEMKRAG--FVAERDTFNTLISA 483
Query: 367 YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y RC ++D+ + ++ ++ +TY+ ++A R GL + + V+ EM+
Sbjct: 484 YSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEME 536
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 11/298 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
L ++ F+ + ++++LI++ + L L+ ++ + KG + + Y L++
Sbjct: 322 LQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQM--VHKGIKPDVFTYTTLLSGF 379
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K FA+ VF M A G KP+ FN+LI G + +F+ + P+
Sbjct: 380 EKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDD-IKLCNCSPD 438
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ ++ F G ++ + AGF T+ +LI + FD Y+
Sbjct: 439 IVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYK 498
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC--- 295
M+ G++P + VL L ++ + L + G K NE L+ Y
Sbjct: 499 SMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGK 558
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
E+ R++ E++ + S E ++ + + SD L + E + + ++G+S
Sbjct: 559 EIERMNAFAEEIYS-----GSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGIS 611
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ + + A N + ++ L+ +L K+A+ VL + LK N + Y LI
Sbjct: 261 LNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPN---VITYNTLID- 316
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+A HVF ++ G+ PD +N +I V AL+L++ M + P
Sbjct: 317 -------GYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEM-HQKNMVP 368
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ TY++ I G G + G NV TY SLI+G K D
Sbjct: 369 NTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALI 428
Query: 238 EEMMSLGIIPSIPILEKVLEG-LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+M GI P + L +L G LC ++L + + LL G+ N ++ +C+
Sbjct: 429 NKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCK 488
Query: 297 LGRVDE---LEEQLE 308
G +DE L+ ++E
Sbjct: 489 EGLLDEAYALQSKME 503
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 9/202 (4%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+KG + + Y+ +I V + A+ M + I PD ++N+L+ A G V
Sbjct: 231 VKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVK 290
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A ++ ++V + KPN TY+ I G++ + A G + +V +Y +
Sbjct: 291 EAKNVLAVIVKTC-LKPNVITYNTLIDGYAK--------HVFNAVGLMGVTPDVWSYNIM 341
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+ K + + Y+EM ++P+ +++GLC ++ + + G
Sbjct: 342 INRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGH 401
Query: 281 KINENMAQKLVKCYCELGRVDE 302
N L+ C+ G++D+
Sbjct: 402 HANVITYNSLINGLCKNGQLDK 423
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 19/222 (8%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA------FNSSQFSWDALITSLQSSSPK 87
+ V S N +I+RL +IK ++++++ + ++++LI L S
Sbjct: 332 TPDVWSYNIMINRL-----CKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKS--- 383
Query: 88 KAQLVLEWRL-DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
++ W L D+M +G+ + + Y LI K + A+ + M+ QGI+PD
Sbjct: 384 -GRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYT 442
Query: 146 FNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
N L+ LC G + A LF+ ++ + Y PN TY+ I G G +D +
Sbjct: 443 LNILLHGLLCKGKRLKNAQGLFQDLLD-KGYHPNVYTYNIIIYGHCKEGLLDEAYALQSK 501
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S N T++ +I L+ + D ++ EM++ G++
Sbjct: 502 MEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGLL 543
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKP 177
K+++ P + + +E + I+PD N LI C C G + A S+ ++ Y+P
Sbjct: 74 AKMKHYPTVVSLSRRLELKAIQPDFFTLNILI-NCFCHLGQINLAFSVLSKILKWG-YQP 131
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ T I G G V ++ +A GF ++ +Y +LI+G K + + +
Sbjct: 132 DTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLL 191
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ P++ + +++ LC R+ + + + G N ++ +C +
Sbjct: 192 RRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIV 251
Query: 298 GRVDE 302
G++ E
Sbjct: 252 GKLTE 256
>gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group]
Length = 540
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V V H + +M G+ PD + LI A + AL +FE MV E Y P
Sbjct: 263 GRVDKVE---HFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVH-EGYCPT 318
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y+A I F S+GN D K+Y + N+ TY +I L+ R + ++
Sbjct: 319 TMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFD 378
Query: 239 EMMSLGIIPSIPILEKVLEGLC 260
EM+S GI+PS ++ +E LC
Sbjct: 379 EMLSRGILPSTGMITLFIEPLC 400
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 44/249 (17%)
Query: 96 RLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R+DK+ E+ L++ Y LI G+ A+ VF M +G P + +N
Sbjct: 264 RVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYN 323
Query: 148 SLICACLCSGD-----------------------------------VVTALSLFEIMVSS 172
+LI + G+ V AL +F+ M+S
Sbjct: 324 ALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFDEMLS- 382
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P++ FI + G A Y + AG ++++ Y+ L+ +
Sbjct: 383 RGILPSTGMITLFIEPLCTFGPPHAALLIYKRSRKAGCRISMKAYKLLLERLAMFGKSGT 442
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
V + +EEM G I E ++ GLC K+D S ++ + G+ + + KL
Sbjct: 443 VLQIWEEMQESGHPSDKEIYEFIVNGLCNVGKVDAAVSVVEESIRKGFCLGRVVYGKLNN 502
Query: 293 CYCELGRVD 301
E+ +V+
Sbjct: 503 KLLEMNKVE 511
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 5/272 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDE 110
V++ + D + + ++ ++ AL+ + ++ L ++M +G E L
Sbjct: 54 VAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFAL---FEEMRRGGVEPNLYT 110
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + A +F M +GI + +N+LI G + A L ++M
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM- 169
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E +P+ T++ + G+ G + ++ AAGF + TY LI G +ARD
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+R +M G+ P+ +++ + + L + G +++ + L
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVL 289
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
V+ C G + + + +++ + P +++
Sbjct: 290 VRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 119/324 (36%), Gaps = 5/324 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L + K ++ LD AC ++G K +V A VF M G+ P+ + +L+
Sbjct: 25 LARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYF 84
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G +LFE M +PN TY+ I + G + + G NV
Sbjct: 85 THGQREKGFALFEEMRRGG-VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNV 143
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
+Y +LI G + + + M + G PSI +++G K+ F
Sbjct: 144 VSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+ G++ + L+ +C + L + + P + + +I +A
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTI--LIDSFARE 261
Query: 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATY 394
+ + + M K GL + +V D LF + + Y
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Query: 395 DFLVAGYRRAGLSGKLDSVINEMK 418
D ++ GY R G S K +I EM+
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMR 345
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 107/269 (39%), Gaps = 5/269 (1%)
Query: 154 LCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC+ GDV +AL++ S + + A ++G G+V + + G +
Sbjct: 12 LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N TY +L+HG + +EEM G+ P++ ++ C + +R +S
Sbjct: 72 NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ G N L+ C G++ + + L+ + P ++ F+ ++ Y
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT--FNLLVDGYG 189
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRR 391
+ ++ + +M G SA M+I + R R + L +K + +
Sbjct: 190 KAGKMSNALPFFNQMKAAGFQ-PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
TY L+ + R GK ++ M+ A
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKA 277
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 52/281 (18%), Positives = 100/281 (35%), Gaps = 42/281 (14%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEY 111
+ ++ D + + + S++ LI L + +L +L M++ G + +
Sbjct: 126 RARSLFDEMPVRGIVRNVVSYNTLIAGL----CRHGKLWDAAKLLDMMRTEGTRPSIITF 181
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
L+ GK + A+ F M+A G +P + +N LI + D+ A M
Sbjct: 182 NLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDM-K 240
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-------- 223
+P TY I F+ ++ + A AG V+ TY L+
Sbjct: 241 ERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMK 300
Query: 224 -------SLKARDFDSVDRFYE--------------------EMMSLGIIPSIPILEKVL 256
S+ + + + Y+ EM G+IP+ +
Sbjct: 301 DARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTI 360
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
LC K ++ L ++ G + +E++ Q L+ L
Sbjct: 361 RVLCKDDKCQEAEALLDDMVRAGLQTSESICQALLDAKARL 401
>gi|218190552|gb|EEC72979.1| hypothetical protein OsI_06882 [Oryza sativa Indica Group]
Length = 541
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V V H + +M G+ PD + LI A + AL +FE MV E Y P
Sbjct: 264 GRVDKVE---HFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVH-EGYCPT 319
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y+A I F S+GN D K+Y + N+ TY +I L+ R + ++
Sbjct: 320 TMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFD 379
Query: 239 EMMSLGIIPSIPILEKVLEGLC 260
EM+S GI+PS ++ +E LC
Sbjct: 380 EMLSRGILPSTGMITLFIEPLC 401
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 44/249 (17%)
Query: 96 RLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R+DK+ E+ L++ Y LI G+ A+ VF M +G P + +N
Sbjct: 265 RVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYN 324
Query: 148 SLICACLCSGD-----------------------------------VVTALSLFEIMVSS 172
+LI + G+ V AL +F+ M+S
Sbjct: 325 ALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFDEMLS- 383
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P++ FI + G A Y + AG ++++ Y+ L+ +
Sbjct: 384 RGILPSTGMITLFIEPLCTFGPPHAALLIYKRSRKAGCRISMKAYKLLLERLAMFGKSGT 443
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
V + +EEM G I E ++ GLC K+D S ++ + G+ + + KL
Sbjct: 444 VLQIWEEMQESGHPSDKEIYEFIVNGLCNVGKVDAAVSVVEESIRKGFCLGRVVYGKLNN 503
Query: 293 CYCELGRVD 301
E+ +V+
Sbjct: 504 KLLEMNKVE 512
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 6/229 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK AM +F+ M G +PD++V+N+LI A L S D ++ AL F
Sbjct: 137 YSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYF 196
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E KPN TY+ + F+ NV+ N + + S ++ T+ ++ K
Sbjct: 197 DKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGK 256
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ R++ D+++ K LL K
Sbjct: 257 NGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPT 316
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
++ Y + ++ E + +T +P + + +I +Y D
Sbjct: 317 FNSMITNYGKARLKEKAENVFKKMTDMGYAPNFIT--YESLIMMYGFCD 363
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 161/373 (43%), Gaps = 44/373 (11%)
Query: 37 VSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
VS N LI L + V ++ +D + + + S+ ++I+ L + L +
Sbjct: 247 VSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAV-- 304
Query: 96 RLDKMLK-GNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
L KM++ G + ++ L+ L G+V + ++ M +G++P+ V+N+L+
Sbjct: 305 -LGKMIRRGCRPNVHTFSSLMKGYFLGGRVGE---GVGLWRVMVLEGVRPNVVVYNTLLN 360
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
CSG++ A+ + M +PN TY + GF G++ ++ + + G
Sbjct: 361 GLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVR 420
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-------ARRK 264
NV Y S++ K FD R + M + G P++ ++GLC A R
Sbjct: 421 PNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRV 480
Query: 265 LDRVKSF--------LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+D+++ + LL G + +NE +K CEL R ELEE +
Sbjct: 481 VDQMQRYGCLPDTRTYNELLDGLFSVNE------LKEACELIR--ELEE---------RK 523
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
E+ L ++ ++ ++ + + V +GRM G+ A V +VI +Y +
Sbjct: 524 VELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVK-PDAITVNVVIYAYSKLGKVRTA 582
Query: 377 DLFLDHIKGSYKL 389
FLD I +L
Sbjct: 583 IQFLDRITAGKEL 595
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 10/279 (3%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKV 121
+ AF + ++ +I L +S A L + L +M C D + C++
Sbjct: 65 NTLAFKHTPLTYHVMIEKLGRNSELDA---LHYILHQMKIERIPCSQDSFICVLNSYKNS 121
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSK 180
A+ +F ++ G KP ++N L+ A L SG+ + + E +PN
Sbjct: 122 GLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVF 181
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ + G +D K G + +Y +++ + V+ E
Sbjct: 182 TYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCED---GRVEEAREVA 238
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
G + + ++ GLC ++ V + ++G G N ++ ++G V
Sbjct: 239 RRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEV 298
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ L + + P V H FS +++ Y L R+ +
Sbjct: 299 ELALAVLGKMIRRGCRPNV--HTFSSLMKGYFLGGRVGE 335
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 14/249 (5%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-AL 117
L + I SQ S+ ++ S ++S L + +R+ + G + + Y L+ AL
Sbjct: 96 LHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEF--GCKPTVKIYNHLLDAL 153
Query: 118 SGKVQNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
G+ N F M V+ +M +G++P+ +N L+ A +G + A L + +S
Sbjct: 154 LGESGN-KFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLL-VEMSKRGC 211
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLKARDFDSV 233
P+ +Y ++ G V+ A +A F V +LI G + V
Sbjct: 212 VPDGVSYTTVVAAMCEDGRVEE-----AREVARRFGAEGVVSVCNALICGLCREGRVGEV 266
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+EM+ G+ P++ V+ L +++ + L ++ G + N + L+K
Sbjct: 267 FGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKG 326
Query: 294 YCELGRVDE 302
Y GRV E
Sbjct: 327 YFLGGRVGE 335
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 128/287 (44%), Gaps = 9/287 (3%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
M KG + + Y ++ V V A+++F M +G++P+ +N +I V
Sbjct: 209 MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRV 268
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A++LF+ M ++ P+ TY+ I G LG + + + G +V++ TY S
Sbjct: 269 DEAMNLFKEM-HWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNS 327
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
L+H K D +E+ GI P++ +++GLC +L+ + +L G
Sbjct: 328 LLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEG 387
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ I ++ C+ G DE L + P+ + + II YALS++ +
Sbjct: 388 YHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAV--SYETII--YALSEKGET 443
Query: 340 VEYS--VGRMGKQGLSFKSAEDVEMVICSYF--RCAAYDRLDLFLDH 382
V+ + + M +GLS + + V M + + AAY L+ + H
Sbjct: 444 VKTNKLLCAMIVRGLSKRLKKKVNMTTIADLNDKWAAYASLEDGMIH 490
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 33/232 (14%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ + P A+ +F +E GIKP S V +++ C C +T L + Y+PNS
Sbjct: 22 KINHYPTAISLFRQLEFNGIKP-SIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNS 80
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD---------- 229
T+ I G G ++ +A GF ++ +Y L++G K +
Sbjct: 81 ITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRK 140
Query: 230 -------------FDSV---------DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
DS+ R Y EM++ GI P++ +++ LC RK +
Sbjct: 141 TWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQ 200
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ L ++ G K N ++ YC + +V++ + + P V
Sbjct: 201 AMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNV 252
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 37/259 (14%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ F + T + G +P+S F +LI +G AL LF V + +K + +Y
Sbjct: 61 ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEAL-LFHDHVVAHGFKLDQVSYA 119
Query: 184 AFISGFSSLGNVDAM-----NKW---------------------------YAANIAAGFS 211
++G +G A W Y+ IA G
Sbjct: 120 ILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF 179
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV T+ L+ K R MM G+ P++ +++G C ++++ +
Sbjct: 180 PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
++ G + N ++ C+ RVDE + + +P+V+ + G+ +
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299
Query: 330 LYALSDRLDDVE--YSVGR 346
L +S L+ V+ S+G+
Sbjct: 300 LGKISTSLELVDEMRSIGK 318
>gi|357491603|ref|XP_003616089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517424|gb|AES99047.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 552
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 138/298 (46%), Gaps = 17/298 (5%)
Query: 91 LVLEWRLDKMLKGNESCLD-----EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
LV+ WR + L +++C + EY+ I +G+ +N+ A+ +F E +G+K S
Sbjct: 175 LVINWRRKRKLSFSDACRNSMHAHEYSKGIKAAGRSRNIDLAVELFKEAEFKGLKITS-T 233
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+N+L+ A + +G SLF M P+ TY+ IS F L D M +
Sbjct: 234 YNALMGAYMFNGLSDKCYSLFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEATFKEM 293
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG---LCAR 262
+ N+ TY LI G + + ++R ++ + S + P++ ++ G L
Sbjct: 294 NELPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGYAHLGNL 353
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVDELEEQLETLTKCNQSPEVLL 321
K++++ S +K +N+ +++ C YC+ D++ +++ L K E
Sbjct: 354 EKMEKIYSLVKD------NVNDIPIIRVMICAYCKSSDADKM-NKVKALLKLIPEKEYRP 406
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
+I+LYA + L++++ ++ K+ + + +I +YFR A + L+ F
Sbjct: 407 WLNVLLIKLYAEENCLEEMDNAINEAFKRRTVVTTMGIMRCIITAYFRNNAIESLEKF 464
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF +++ +G PD ++ +LI G + A L+ M+ + + PN +Y+ I
Sbjct: 316 AFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMID-KGFLPNEYSYNTLI 374
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGI 245
GF +GN+D K Y + +G+ + +LI G L R ++ D F+ EM I
Sbjct: 375 YGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYD-FFREMPCKNI 433
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + +++G C K+ + LK L G + + + L++ C+LG V E +E
Sbjct: 434 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKE 493
Query: 306 QLETLTKCNQSPEVLL--HFFSGI 327
+ P V H SG+
Sbjct: 494 MWNDMHNRGLQPMVCTRDHIISGL 517
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 4/237 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+DK NE Y LI K+ N+ AM ++ M G K + N+LI
Sbjct: 359 IDKGFLPNEY---SYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLH 415
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G A F M + + TY+ I GF G V A G + +
Sbjct: 416 GRTDEAYDFFREM-PCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSS 474
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LI + + +M + G+ P + + ++ GLC + + +L +L
Sbjct: 475 YAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITML 534
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
K + KL++ ++G+ LE ++++ T P + S + L+ +
Sbjct: 535 KSNLKPQKETFYKLIQSLIQIGKELLLELKMDSKTSKEVYPLAMTKSSSNFLPLFLI 591
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 141 PDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P+ A + I C+C G +V A+ F+ M+ Y+P +T++ G D +
Sbjct: 153 PEPASLENYI-RCVCEGGLVEEAVYTFD-MLKEAGYRPYVETWNFAFQSCLKFGRTDLIW 210
Query: 200 KWYAANIAAGFS--VNVQTYESLIHGSLKARDFDSVDRFYE---EMMSLGIIPSIPILEK 254
K Y + G V+++T LI + V R YE + + G+ P K
Sbjct: 211 KLYEGMMETGVQKDVDIETVGYLIQAFCND---NKVSRAYEILRQSLEDGLTPCNDAFNK 267
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
++ G C + RV + ++ + Q+++ +C+ + E L
Sbjct: 268 LISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRG 327
Query: 315 QSPEVLLH--FFSGIIRLYALSD 335
+P+++++ G ++ L D
Sbjct: 328 YAPDMVMYTTLIHGFCKMGQLED 350
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + ME G P +++ I G V +AL ++S+ N Y+A I
Sbjct: 274 ATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGL-VNVYCYNAII 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G +D K + G S +V TY LIHG K D + EEM +
Sbjct: 333 HGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNME 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ + GLC +R D + L G+K ++ L+K +C G +D +
Sbjct: 393 PSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKL 452
Query: 307 LETLTKCNQSP-----EVLLHFF 324
+E + + N +P E L+H F
Sbjct: 453 MEEMVRNNLAPDPSNFESLVHGF 475
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 42/328 (12%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----------------- 169
A+ V M++ GI PD ++ LI GDV L L E M
Sbjct: 344 ALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFH 403
Query: 170 -----------------VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ + YK + Y I GF G++D+ +K + +
Sbjct: 404 GLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAP 463
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ +ESL+HG K + + F+ M+ GI+PSI +++ C +++ + +
Sbjct: 464 DPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLM 523
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ G N ++ C+ + + E + K N P V++ +S +I +A
Sbjct: 524 NEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVV--YSTLIDGFA 581
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEM--VICSYFR-CAAYDRLDLFLDHIKGSYKL 389
RM K G++ + ++C R C AY +LF +
Sbjct: 582 KQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAY---NLFKKMTENGMTP 638
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ +Y ++AG+ R G K ++ NEM
Sbjct: 639 DKISYTSVIAGFCRIGDMRKAWALFNEM 666
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 5/209 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHV 130
F+++A+I L +K++ LE MLK N + Y+ LI K N A+ +
Sbjct: 536 FTYNAVINRL--CKERKSERALEL-FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALML 592
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G+ PD + LI + A +LF+ M + P+ +Y + I+GF
Sbjct: 593 YARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKM-TENGMTPDKISYTSVIAGFC 651
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+G++ + + G V TY SL+ G K D D +EM GI P +
Sbjct: 652 RIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVV 711
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ R LD+ L + G
Sbjct: 712 TYNVLIAAHRRRGNLDKALEMLNEMKENG 740
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 38/292 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F M GI P A N +I A G V AL+L M + + PN TY+A I
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIF-PNLFTYNAVI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + + + + +V Y +LI G K + Y M+ +G+
Sbjct: 543 NRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVT 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ LC R ++ + K + G ++ ++ +C +G + +
Sbjct: 603 PDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWAL 662
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P V+ ++ ++ Y +R+D + + M ++G++ DV
Sbjct: 663 FNEMLQRGHLPTVVT--YTSLVDGYCKMNRIDIADMLIDEMKRKGIT----PDV------ 710
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY+ L+A +RR G K ++NEMK
Sbjct: 711 -------------------------VTYNVLIAAHRRRGNLDKALEMLNEMK 737
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 4/197 (2%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
+ LI S + L+L R+ K+ G + Y LI + + A ++F
Sbjct: 573 YSTLIDGFAKQSNSQKALMLYARMLKI--GVTPDMVAYTILINILCHRSRMCEAYNLFKK 630
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G+ PD + S+I GD+ A +LF M+ + P TY + + G+ +
Sbjct: 631 MTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQ-RGHLPTVVTYTSLVDGYCKMN 689
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + G + +V TY LI + + D EM G++P +
Sbjct: 690 RIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPD-HMTY 748
Query: 254 KVLEGLCARRKLDRVKS 270
+LE L +KL +S
Sbjct: 749 MMLEWLLKAKKLKTRRS 765
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 44/268 (16%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
++ + ++ + Q V A++ F ME G+ P+ A FNSL+CA S +V A +FE
Sbjct: 136 VETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFE 195
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT----------- 216
M + + P++KTY + G+ N+ M K Y+ + AG ++ T
Sbjct: 196 QM--NGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKT 253
Query: 217 ------------------------YESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPI 251
Y L+H ++ R D+V F +M GI+P + +
Sbjct: 254 GRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFL-DMQKDGIVPDVVV 312
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ C +K D + + G G N ++ LG+ DE +
Sbjct: 313 YNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMI 372
Query: 312 K-CNQSPEVLLHFFSGIIRLYALSDRLD 338
K C + ++ +I+++ +DRL+
Sbjct: 373 KRCQPDSDT----YTMMIKMFCENDRLE 396
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 6/209 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ G + A+ F M+ GI PD V+N+L+ A C V + F +M
Sbjct: 278 YSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTA-FCK--VKKFDNAFRVMD 334
Query: 171 SSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
E + PNS+T++ ++ SLG D + + I + TY +I +
Sbjct: 335 DMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKR-CQPDSDTYTMMIKMFCEND 393
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + ++ M +PS+ ++ GLC + ++ + L+ ++ G + +
Sbjct: 394 RLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFG 453
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSP 317
KL + + GR D LE ++ + Q P
Sbjct: 454 KLRQLLLKEGRKDVLEFLVDKMKILIQEP 482
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M+++G PD +++LI A + V +A LFE M
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM- 385
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ TY + I+ G VD ++ ++ G S +V TY + ++ + F
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+M G++P + + +L GL +++D LK L+ G + +
Sbjct: 446 KEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDEC 505
Query: 291 VKCYCELGRVDELEEQLE 308
++ G VDE E L+
Sbjct: 506 LEILTSWGNVDEAHELLQ 523
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 3/244 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI GK V A +F ME+ GI+PD + S+I +G V A LF M
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM- 420
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY+AF++ G K + +G +V TY++L+ G K ++
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +E++ G ++ LE L + +D L+F G + L
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + GRV E LE L + P+++ +S +I + ++D + M K+
Sbjct: 541 IDALAKAGRVSEAFNTLEDLKEQGGKPDIV--SYSSLISALGQTGQIDTAFELLEEMSKR 598
Query: 351 GLSF 354
GL
Sbjct: 599 GLKL 602
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 5/214 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+CLI G+ A+ V M+A+G KP+ +N+L+ +G AL L M
Sbjct: 47 YSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM- 105
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ +TY+ IS G + +A G + TY SLI+G K
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF--LLGGGWKINENMAQ 288
EEM G P + ++ GL + + VK+F F + G K +
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGL--GKDGETVKAFKLFQEMKRRGRKPDSITFT 223
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ + GRVD+ E L+ + + P V+ +
Sbjct: 224 ALMDALGKAGRVDDALELLDEMKERGVKPGVVTY 257
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 13/283 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
S+ LI SL + K + LE + KG + L Y L+ GK A+ +
Sbjct: 46 SYSCLINSLGRAG--KWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLA 103
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M G PD +N LI +G + A +LF M P++ TY++ I G +
Sbjct: 104 EMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM-RERGCVPDTFTYNSLIYGLGKV 162
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF--YEEMMSLGIIPSIP 250
G + G +V TY SLI G +D ++V F ++EM G P
Sbjct: 163 GRSQKAMELLEEMERHGCPPDVMTYSSLITGL--GKDGETVKAFKLFQEMKRRGRKPDSI 220
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++ L ++D L + G K L+ + ++G + E L+ +
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280
Query: 311 TKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P+V+ + +G+I+ + +LD+ + +M K+G
Sbjct: 281 KRNGCKPDVVTYSCLITGLIK----ASQLDEACQVLKKMEKEG 319
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 3/241 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI+ GK + A +F M +G PD+ +NSLI G A+ L E M
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM- 175
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY + I+G G K + G + T+ +L+ KA
Sbjct: 176 ERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRV 235
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +EM G+ P + ++ G L + L + G K + L
Sbjct: 236 DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCL 295
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + ++DE + L+ + K P+ + ++ +I + L+D RM +
Sbjct: 296 ITGLIKASQLDEACQVLKKMEKEGCPPDTIT--YNTLINGLGKAGLLNDAGRLFDRMKSK 353
Query: 351 G 351
G
Sbjct: 354 G 354
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 111/278 (39%), Gaps = 3/278 (1%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +NSL+ A +G A LFE + +++ + P+ +Y I+ G +A +
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAK-WTPDVVSYSCLINSLGRAGKWEAALE 65
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
A A G N+ TY +L+ KA FD R EM G +P + ++ L
Sbjct: 66 VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+L + + G + L+ ++GR + E LE + + P+V+
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
+S +I M ++G S ++ D L+L
Sbjct: 186 T--YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLD 243
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + K TY+ L+AG+ + G + ++++EMK
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK 281
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + I P+ +NSLI + A +F +MVS ++ P+ TY+ I
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLI 387
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF V + + G N TY +LIHG +A D D+ +++M+S G+
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + + + + C+ G+V++ +
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507
Query: 307 LETLTKCNQSPEVL 320
+L+ P+V+
Sbjct: 508 FCSLSLKGVKPDVI 521
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 3/249 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+S+ +D + + ++ L+ L + + L R+ ++KG + L Y
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM--VVKGCQPDLVTY 208
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+I K A+++ ME I+ D +++++I + V AL+LF M
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-D 267
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
++ +P+ TY + IS + G ++ + + + NV T+ SLI K
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ ++EM+ I P+I ++ G C +LD + ++ + L+
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 292 KCYCELGRV 300
+C+ +V
Sbjct: 388 NGFCKAKKV 396
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 5/256 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
KK LV+ + + G L Y +I + + FA+ + M G P
Sbjct: 79 KKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL 138
Query: 147 NSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
NSL+ C G+ ++ A++L + MV Y+P++ T+ + G
Sbjct: 139 NSLLNG-FCHGNRISEAVALVDQMVEM-GYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G ++ TY ++I+G K + D +M I + I V++ LC R +
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + + G + + L+ C C GR + L + + +P V+ F+
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT--FN 314
Query: 326 GIIRLYALSDRLDDVE 341
+I +A +L + E
Sbjct: 315 SLIDAFAKEGKLIEAE 330
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 3/214 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEI 168
E++ L++ K++ + ME G+ + +N +I CLC ++ AL++
Sbjct: 67 EFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI-NCLCRRSQLSFALAILGK 125
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 126 MMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 184
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
E M+ G P + V+ GLC R + D + L + G + + +
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C+ VD+ + P+V +
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 7/293 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
VSQ L+S+ + ++ L+ L + S A VL LD N L
Sbjct: 207 VSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN---LVT 263
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + + V A+ + M +G P+ + +LI G V A ++ M+
Sbjct: 264 YNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 323
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ Y+ I+G VD ++ G +V TY S+I+G ++
Sbjct: 324 D-KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 382
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R + S G P + + +++GLC K+D + + G G + L
Sbjct: 383 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVE 341
+ C+ GRVDE L + + P + + G+ L L + ++ VE
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVE 495
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 121/298 (40%), Gaps = 22/298 (7%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIF-AFNSSQFSWDALI-TSLQSSSPKKAQLVLEWRLD 98
N + +L + + K ++D++ F A S D +I T+L S K E RLD
Sbjct: 43 NVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWK------EKRLD 96
Query: 99 KML--------KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
+ L G E + Y LI K A +F M++ P +N+L+
Sbjct: 97 QALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLL 156
Query: 151 CACLCSGDVVTALSLFEIMVSSEEY------KPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+G + A++LF+ M+ + PN TY I G V + +
Sbjct: 157 DGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLES 216
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
A G S +V TY L+ G K + EM+ G +P++ +L GLC R+
Sbjct: 217 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 276
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ + ++ + G N L+ C++GRV + L + +P+++++
Sbjct: 277 VSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIY 334
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K V A + M G P + +NSLI + A+ L E M
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 498
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAG-FSVNVQTYESLIHGSL 225
S P++ TY+ I G + VD+ + + A +AAG +++ Y SLI G
Sbjct: 499 RSN-CAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLC 557
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
KA +++EM+ G+IP +LEGL + L ++ +
Sbjct: 558 KAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 604
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 4/157 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVD 234
+P+ TY A + GF G +D + + + NV LI G KA R D++
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL- 64
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
R + M GI+ I +L GL ++LD+ + L + G + N L+
Sbjct: 65 RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
C+ D +E E + SP ++ + G+ R
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFR 161
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAM 198
+PD + +L+ G++ A F+ M S+ PN I G ++DA+
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEM-RSKNLVPNVFLCSILIDGLCKAKRSIDAL 64
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + A +G + Y +L+ G K + D EM G P++ +++G
Sbjct: 65 -RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123
Query: 259 LCARRKLDRVKSFLKFL 275
LC + DR + + +
Sbjct: 124 LCKNNEPDRAQELFEHM 140
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 5/287 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ V FA V + G +PD+A F +LI G + AL LF+ M+ E ++P+
Sbjct: 121 HLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW-EGFQPDV 179
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y I+G G+ A + + +V Y +LIH K R + E
Sbjct: 180 VIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSE 239
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ GI P+I ++ LC + V + L ++ N +V C+ G
Sbjct: 240 MITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGM 299
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V + + ++ + + P+V+ ++ +I + L +D+ M +G + +
Sbjct: 300 VAQAHDVVDMMFQSGVEPDVVT--YTALIDGHCLRSEMDEAVKVFDMMVHKGCA-PNVFS 356
Query: 360 VEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+I Y + D+ + LF + + TY+ L+ G G
Sbjct: 357 YNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVG 403
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 3/211 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M I P++ +++ A G V A + ++M S +P+ TY A I G
Sbjct: 271 LLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSG-VEPDVVTYTALIDGH 329
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+D K + + G + NV +Y +LI+G K D +EEM +IP+
Sbjct: 330 CLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNT 389
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC +L + + ++ G + + L+ C+ +D+ L+
Sbjct: 390 VTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKA 449
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ N P++ ++ G+ R L D D
Sbjct: 450 IEGSNLDPDIQIYTIVIDGMCRAGELEDARD 480
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 100/243 (41%), Gaps = 15/243 (6%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
DKM+ +G + + YA LI K + A+ + SME +PD V+ +LI +
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
A +LF M+ ++ PN T ++ + +LG +N + + N +
Sbjct: 228 RQQTQAFNLFSEMI-TKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286
Query: 217 YESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+++ K A+ D VD ++ G+ P + +++G C R ++D
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVDMMFQS----GVEPDVVTYTALIDGHCLRSEMDEAVKVF 342
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-----EVLLHFFSGI 327
++ G N L+ YC++ R+D+ E + + P L+H +
Sbjct: 343 DMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHV 402
Query: 328 IRL 330
RL
Sbjct: 403 GRL 405
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K++ + AM++F M Q + P++ +N+LI G + A++LF MV
Sbjct: 357 YNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMV 416
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY + ++D A + ++Q Y +I G +A +
Sbjct: 417 ACGQI-PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGEL 475
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + + S G+ P++ + GLC R LD
Sbjct: 476 EDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDE 512
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++E + PD ++ +I +G++ A LF + SS+ KPN TY+
Sbjct: 443 AMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNL-SSKGLKPNVWTYNIMT 501
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
G G +D K + S + TY ++ G L+ + + EEM++ G
Sbjct: 502 HGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARG 559
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF +++ +G PD ++ +LI G + A L+ M+ + + PN +Y+ I
Sbjct: 352 AFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMID-KGFLPNEYSYNTLI 410
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGI 245
GF +GN+D K Y + +G+ + +LI G L R ++ D F+ EM I
Sbjct: 411 YGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYD-FFREMPCKNI 469
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + +++G C K+ + LK L G + + + L++ C+LG V E +E
Sbjct: 470 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKE 529
Query: 306 QLETLTKCNQSPEVLL--HFFSGI 327
+ P V H SG+
Sbjct: 530 MWNDMHNRGLQPMVCTRDHIISGL 553
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 4/215 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+DK NE Y LI K+ N+ AM ++ M G K + N+LI
Sbjct: 395 IDKGFLPNEY---SYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLH 451
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G A F M + + TY+ I GF G V A G + +
Sbjct: 452 GRTDEAYDFFREM-PCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSS 510
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LI + + +M + G+ P + + ++ GLC + + +L +L
Sbjct: 511 YAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITML 570
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
K + KL++ ++G+ LE ++++ T
Sbjct: 571 KSNLKPQKETFYKLIQSLIQIGKELLLELKMDSKT 605
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 141 PDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P+ A + I C+C G +V A+ F+ M+ Y+P +T++ G D +
Sbjct: 189 PEPASLENYI-RCVCEGGLVEEAVYTFD-MLKEAGYRPYVETWNFAFQSCLKFGRTDLIW 246
Query: 200 KWYAANIAAGFS--VNVQTYESLIHGSLKARDFDSVDRFYE---EMMSLGIIPSIPILEK 254
K Y + G V+++T LI + V R YE + + G+ P K
Sbjct: 247 KLYEGMMETGVQKDVDIETVGYLIQAFCND---NKVSRAYEILRQSLEDGLTPCNDAFNK 303
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
++ G C + RV + ++ + Q+++ +C+ + E L
Sbjct: 304 LISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRG 363
Query: 315 QSPEVLLH--FFSGIIRLYALSD 335
+P+++++ G ++ L D
Sbjct: 364 YAPDMVMYTTLIHGFCKMGQLED 386
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 40/304 (13%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S ++ L+TS+ L L ++D G + LI + V FA
Sbjct: 60 STVDFNKLLTSIAKMKHHSTLLSLSHQMDSF--GIPPNIYTLHILINSFCHLNRVGFAFS 117
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + G +PD+A F +LI G + AL LF+ M+ E ++P+ TY I+G
Sbjct: 118 VLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG-EGFRPDVVTYGTLINGL 176
Query: 190 SSLGN--------------------------VDAMNK---------WYAANIAAGFSVNV 214
+GN +D++ K ++ + G S ++
Sbjct: 177 CKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDI 236
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLIH ++ V EM+ I+P + V++ LC K+ +
Sbjct: 237 FTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDK 296
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + N L+ +C L +DE + +T+ P V+ ++ +I Y
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVI--SYNTLINGYCKI 354
Query: 335 DRLD 338
R+D
Sbjct: 355 QRID 358
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 23/244 (9%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEI 168
Y +I K + V A ++F+ M +GI PD +NSLI A LC V +L
Sbjct: 204 YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA--TLLNE 261
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
MV S+ P+ +++ + G V + I G NV TY +L+ G
Sbjct: 262 MVDSK-IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLS 320
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ D + ++ M+ G +P++ ++ G C +++D+ +
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHY----------------T 364
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ C +DE + +T+ P V+ ++ +I Y R+D Y G M
Sbjct: 365 XLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVI--SYNTLINGYCKIQRIDKAMYLFGEMC 422
Query: 349 KQGL 352
+Q L
Sbjct: 423 RQEL 426
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 21/243 (8%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CA 152
+DKM+ +G E + Y L+ + + A+ VF +M +G P+ +N+LI C
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353
Query: 153 C----------------LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
C ++ A+ +F+ MV + PN +Y+ I+G+ + +D
Sbjct: 354 IQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVC-KGCMPNVISYNTLINGYCKIQRID 412
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + TY +LIHG + EM++ IP++ +L
Sbjct: 413 KAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 472
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ LC R L + LK + G + + + C G ++ + L+
Sbjct: 473 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 532
Query: 317 PEV 319
P+V
Sbjct: 533 PDV 535
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/219 (18%), Positives = 88/219 (40%), Gaps = 3/219 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M++ GI P+ + LI + V A S+ ++ ++P++ T+ I G G
Sbjct: 87 MDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLG-HQPDTATFTTLIRGICVEG 145
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + I GF +V TY +LI+G K + + R M+ P++
Sbjct: 146 KIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYN 205
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++ LC R++ + ++ G + L+ C L + L +
Sbjct: 206 TIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDS 265
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P+V+ F+ ++ ++ + V +M ++G+
Sbjct: 266 KIMPDVV--SFNTVVDALCKEGKVTEAHDVVDKMIQRGV 302
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 36/232 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+Q + AM++F M Q + PD+ +++LI + A++LF MV
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 457
Query: 171 SSEEYKPNSKTY-----------------------------------DAFISGFSSLGNV 195
+ + PN TY + I G G +
Sbjct: 458 ACSQI-PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGEL 516
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+A ++ + G +V TY +I+G + D + + EM G + I +
Sbjct: 517 EAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 576
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
G + R L+ ++ G+ + + VK + G L++ L
Sbjct: 577 TRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQIL 628
>gi|357491601|ref|XP_003616088.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517423|gb|AES99046.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 142/304 (46%), Gaps = 17/304 (5%)
Query: 85 SPKKAQLVLEWRLDKMLKGNESCLD-----EYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
+ ++ ++V+ WR + L +++C + EY+ I +G+ +N+ A+ +F E +G+
Sbjct: 111 TEREDKVVINWRRKRKLSFSDACRNSMHAHEYSKGIKAAGRSRNIDLAVELFKEAEFKGL 170
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
K S +N+L+ A + +G SLF M P+ TY+ IS F L D M
Sbjct: 171 KITST-YNALMGAYMFNGLSDKCYSLFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHME 229
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG- 258
+ + N+ TY LI G + + ++R ++ + S + P++ ++ G
Sbjct: 230 ATFKEMNELPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGY 289
Query: 259 --LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVDELEEQLETLTKCNQ 315
L K++++ S +K +N+ +++ C YC+ D++ +++ L K
Sbjct: 290 AHLGNLEKMEKIYSLVKD------NVNDIPIIRVMICAYCKSSDADKM-NKVKALLKLIP 342
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
E +I+LYA + L++++ ++ K+ + + +I +YFR A +
Sbjct: 343 EKEYRPWLNVLLIKLYAEENCLEEMDNAINEAFKRRTVVTTMGIMRCIITAYFRNNAIES 402
Query: 376 LDLF 379
L+ F
Sbjct: 403 LEKF 406
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F M +G P FN++I A G+VV A LF+ + + PN+ Y+ +
Sbjct: 110 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGL-KEMGFSPNAIMYNTLM 168
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ + +D N Y G + + T+ L+ G K + DR +++ LG++
Sbjct: 169 NGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLL 228
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + + GLC +LD FL +L G + ++ Y + G D+ E
Sbjct: 229 PDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEA 288
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + +P S ++ +++ RL + +G+M ++GLS
Sbjct: 289 YKLMVHFGLTPSP--STCSSLLMGLSINGRLQEATELIGQMIEKGLS 333
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +VF M +G+ P++ +NSLIC G + AL L ++M P+ T + I
Sbjct: 390 AYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVM-RHRGLLPDIFTTNMII 448
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + + G S ++ TY +LI+G KA D + D M + G
Sbjct: 449 GGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSN 508
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P + + G C+ R+++R L L+ G
Sbjct: 509 PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAG 541
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 38/291 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M +G+ P FNS+I A +G A +++MV P+ T + +
Sbjct: 250 AMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFG-LTPSPSTCSSLL 308
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S G + + I G SVN + L+ K D + EM GI
Sbjct: 309 MGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIF 368
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++GL + ++ + +L G N L+ +C+ G+++E +
Sbjct: 369 PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKL 428
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P++ F + +I +G + KQG +SA
Sbjct: 429 EKVMRHRGLLPDI---FTTNMI---------------IGGLCKQG-RMRSA--------- 460
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+++F+D + TY+ L+ GY +A D+++N M
Sbjct: 461 ---------INVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRM 502
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
++++G++Q A + M +G+ ++ F L+ GDVV A SL+ M
Sbjct: 311 LSINGRLQE---ATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGI 367
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ P+ + AFI G S G V+ + + G N Y SLI G K +
Sbjct: 368 F-PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEAL 426
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ + M G++P I ++ GLC + ++
Sbjct: 427 KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRM 457
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 38/256 (14%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
A L L +V + +F + +G +P F+ +I G + SL +M
Sbjct: 25 AILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLM-P 83
Query: 172 SEEYKPNSKTY-----------------------------------DAFISGFSSLGNVD 196
+PN+ Y + I+ F GNV
Sbjct: 84 KFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVV 143
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
K + GFS N Y +L++G +K R+ D + YEEM GI P ++
Sbjct: 144 EARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILV 203
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G + + LK + G + ++ V C GR+DE E L + + S
Sbjct: 204 SGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLS 263
Query: 317 PEVLLHFFSGIIRLYA 332
P ++ F+ +I Y+
Sbjct: 264 PSIIA--FNSVIAAYS 277
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L K L N + C GK+ A+ + M +G+ PD N +I
Sbjct: 398 LRKGLIPNNFAYNSLICGFCKCGKLNE---ALKLEKVMRHRGLLPDIFTTNMIIGGLCKQ 454
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS---LGNVDAM-NKWYAANIAAGFSV 212
G + +A+++F M P+ TY+ I+G+ + N D + N+ YA+ G +
Sbjct: 455 GRMRSAINVFMDM-HQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYAS----GSNP 509
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++ TY IHG +R + +E++S GI+
Sbjct: 510 DLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIL 543
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 165/401 (41%), Gaps = 38/401 (9%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ KG + L
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVAL---IDRMVAKGCQPDLVT 223
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A + ME ++P ++ ++I + + AL+LF+ M
Sbjct: 224 YGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM- 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY + IS + G ++ + I + +V T+ +LI +K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I PSI ++ G C +LD K +F++ + L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402
Query: 291 VKCYCELGRVDELEEQLETLTK----------------------CNQSPEVLLHFFS-GI 327
+K +C+ RVDE E +++ C+ + E+ S G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSY-----FRCAA---YDRLD 377
+ L D G++ K + F+ + +E I +Y C A D D
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + K Y+ +++G+ R G + D++ EMK
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + +P A+ V M G +P+ +SL+ S + A++L + M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y+PN+ T++ I G +A G ++ TY +++G K D
Sbjct: 179 VTG-YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M + P + I +++GLC + +D + K + G + N L
Sbjct: 238 DLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P+V FS +I + +L + E M K+
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFT--FSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 351 GL 352
+
Sbjct: 356 SI 357
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 479 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 534
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 595 KEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 629
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 11/297 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ + + N + ++++ L+ +L + K+A+ VL L +K + + Y+ L+
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD---VITYSTLMDG 313
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYK 176
V V A HVF +M G+ PD + LI C +V AL+LF+ M +
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING-FCKNKMVDEALNLFKEM-HQKNMV 371
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P TY + I G G + + G +V TY SLI G K D
Sbjct: 372 PGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL 431
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M I P+I +L+GLC +L + + LL G+ +N ++ +C+
Sbjct: 432 FNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
G LEE L L+K + + F F II D D E + +M +GL
Sbjct: 492 QGL---LEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 128/327 (39%), Gaps = 7/327 (2%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L RL+ LKG + L LI + + F V + +G PD+ N+LI
Sbjct: 81 LSHRLE--LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKG 138
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V AL + ++ ++ ++ N +Y I+G +G+ K
Sbjct: 139 LCLKGQVKKALHFHDKLL-AQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKP 197
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV+ Y ++I K + + EM GI + ++ G C KL L
Sbjct: 198 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ N LV C+ G+V E + L + K P+V+ +S ++ Y
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT--YSTLMDGYF 315
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRR 391
L + ++ M G++ ++I + + D L+LF + + +
Sbjct: 316 LVYEVKKAQHVFNAMSLMGVT-PDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGI 374
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G ++G + +I+EM+
Sbjct: 375 VTYSSLIDGLCKSGRIPYVWDLIDEMR 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/321 (20%), Positives = 129/321 (40%), Gaps = 44/321 (13%)
Query: 101 LKGNESCLDEYACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+KG + + Y+ LI + GK++ A+ + M + I P+ +N L+ A G
Sbjct: 227 VKGISADVVTYSTLIYGFCIEGKLKE---AIGLLNEMVLKTINPNVYTYNILVDALCKEG 283
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A S+ +M+ + KP+ TY + G+ + V + A G + +V TY
Sbjct: 284 KVKEAKSVLAVMLKAC-VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTY 342
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
LI+G K + D ++EM ++P I +++GLC ++ V + +
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRD 402
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G + L+ C+ G +D + + E+ + F+ I L L
Sbjct: 403 RGQPADVITYSSLIDGLCKNGHLDRAIALFNKM----KDQEIRPNIFTFTILLDGLC--- 455
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFL 397
+G K A++V F D + Y L TY+ +
Sbjct: 456 ------------KGGRLKDAQEV------------------FQDLLTKGYHLNVYTYNVM 485
Query: 398 VAGYRRAGLSGKLDSVINEMK 418
+ G+ + GL + +++++M+
Sbjct: 486 INGHCKQGLLEEALTMLSKME 506
>gi|115445705|ref|NP_001046632.1| Os02g0304800 [Oryza sativa Japonica Group]
gi|113536163|dbj|BAF08546.1| Os02g0304800 [Oryza sativa Japonica Group]
Length = 617
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V V H + +M G+ PD + LI A + AL +FE MV E Y P
Sbjct: 263 GRVDKVE---HFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVH-EGYCPT 318
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y+A I F S+GN D K+Y + N+ TY +I L+ R + ++
Sbjct: 319 TMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFD 378
Query: 239 EMMSLGIIPSIPILEKVLEGLC 260
EM+S GI+PS ++ +E LC
Sbjct: 379 EMLSRGILPSTGMITLFIEPLC 400
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 44/249 (17%)
Query: 96 RLDKMLKGNESCLDE--------YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R+DK+ E+ L++ Y LI G+ A+ VF M +G P + +N
Sbjct: 264 RVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYN 323
Query: 148 SLICACLCSGD-----------------------------------VVTALSLFEIMVSS 172
+LI + G+ V AL +F+ M+S
Sbjct: 324 ALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVADALQMFDEMLS- 382
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P++ FI + G A Y + AG ++++ Y+ L+ +
Sbjct: 383 RGILPSTGMITLFIEPLCTFGPPHAALLIYKRSRKAGCRISMKAYKLLLERLAMFGKSGT 442
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
V + +EEM G I E ++ GLC K+D S ++ + G+ + + KL
Sbjct: 443 VLQIWEEMQESGHPSDKEIYEFIVNGLCNVGKVDAAVSVVEESIRKGFCLGRVVYGKLNN 502
Query: 293 CYCELGRVD 301
E+ +V+
Sbjct: 503 KLLEMNKVE 511
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 9/226 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG+V+ A+ +F ME G P+ N++I + A +F M + + P
Sbjct: 128 SGRVEE---ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EARDIPP 183
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+S +Y I G + G ++ K + + +G + + TY +IHG A D +
Sbjct: 184 DSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELF 243
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ M S G PS +++ C R K+D LK + G + L+ C +
Sbjct: 244 KSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 303
Query: 298 GRVDELEEQLETLTKCNQSPEV-----LLHFFSGIIRLYALSDRLD 338
RVD+ LE + K P V L+H R+ + LD
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + M G PD +++LI LCS V A L E MV + KP T +
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISG-LCSIARVDDARHLLEDMVK-RQCKPTVVTQNTL 331
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G G + + A +++G S +V TY +L+HG +A + +M++ G+
Sbjct: 332 IHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGL 391
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ ++ GLC +L + G N L+ +C G+VD
Sbjct: 392 APNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFA 127
S+F+++ LI + K+ ++ +RL K + + D Y+ LI+ + V A
Sbjct: 254 SRFTFNILI----DAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
H+ M + KP N+LI +G + A + + MVSS + P+ TY+ +
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVH 368
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G + + + +A G + NV TY +L+ G KA + +M S G P
Sbjct: 369 GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 428
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ ++ G C+ ++D ++ G + + L C+ GR
Sbjct: 429 NLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+S +Y I G + G ++ + + +G + + Y SLIHG A FD
Sbjct: 8 PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M G PS +++ C R L+ +K ++ G + ++ C+
Sbjct: 68 FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127
Query: 297 LGRVDE 302
GRV+E
Sbjct: 128 SGRVEE 133
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 116/288 (40%), Gaps = 12/288 (4%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + + PDS + LI +G + A LF+ ++ S P++ Y + I G
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHS-GVTPSTVAYTSLIHGLCMAN 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ D + +A G + TY +I S K + ++M+ G +P +
Sbjct: 60 SFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYN 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
V++GLC +++ + G N ++ C+ ++D+ + +
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAR 179
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
+ P+ + +I A + +L++ RM G++ SA +VI + C AY
Sbjct: 180 DIPPDSWSYGI--LIDGLAKAGKLNEAYKLFRRMLDSGIT-PSAVTYNVVI--HGMCLAY 234
Query: 374 ---DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ L+LF + R T++ L+ + + GK+D +K
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCK---RGKMDEAFRLLK 279
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A +F + G+ P + + SLI + A LF M
Sbjct: 13 YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM- 71
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY+ I G ++ I G +V TY +++ G K+
Sbjct: 72 NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ + EM LG P+ ++ GLC + K+D+
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQ 168
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 9/244 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K N AM FT ME + ++PD + +LI AC G+ + L L++ M
Sbjct: 263 YNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEME 322
Query: 171 SSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E P++ Y I G G + + G NV Y +LI K +
Sbjct: 323 ERGLEIPPHA--YSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGN 380
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ +E M G P ++ GLC +LD + +F +N
Sbjct: 381 VNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSS 440
Query: 290 LVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L+ + GRVDE E+ E + + C Q + ++ +I A S ++++ RM
Sbjct: 441 LIDGLGKAGRVDEAEKFFEEMVERGCPQDS----YCYNALIDALAKSGKMEEALVLFKRM 496
Query: 348 GKQG 351
K+G
Sbjct: 497 EKEG 500
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 37/236 (15%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG ++ + Y LI GK NV A+++F M+ +G +PD + ++ SG +
Sbjct: 359 KGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDE 418
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW---------------YAANI 206
A+ FE E N+ Y + I G G VD K+ Y A I
Sbjct: 419 AVEYFEF-CKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALI 477
Query: 207 AA--------------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
A G V TY LI G K + + ++ M+ GI
Sbjct: 478 DALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGIT 537
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+ + GLC K+ R L L G I E + ++ C+ GR ++
Sbjct: 538 PTTASFRALSVGLCLSGKVARACKILDELAPMG-VIPETAFEDMINVLCKAGRTEQ 592
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 106/264 (40%), Gaps = 15/264 (5%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI G + V + V+ M+ GI+P FN L+ + S + +A +FE+M
Sbjct: 196 LIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVM-ECG 254
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ P+ +Y+ I G+ GN + + + TY +LI +FDS
Sbjct: 255 KIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSC 314
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
Y+EM G+ V+ GLC + S + + G K N + L+
Sbjct: 315 LHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDA 374
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGL 352
Y + G V+E E + P+ + + I+ S RLD+ VEY
Sbjct: 375 YGKNGNVNEAINLFERMKGEGFEPDDVT--YGVIVNGLCKSGRLDEAVEY---------- 422
Query: 353 SFKSAEDVEMVICSYFRCAAYDRL 376
F+ +D E+ + + F + D L
Sbjct: 423 -FEFCKDNEVAVNAMFYSSLIDGL 445
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 10/275 (3%)
Query: 53 SQIKTTLDSVDIFAF---NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
+IK D D A N + FS+ ++ + K LV L ++ G+ D
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYAT----KGCLVDMTDLFDLMLGDGIAPD 393
Query: 110 EYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI + AM +F M G+KPD + ++I A G + A+ F
Sbjct: 394 IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+ Y I GF + G++ + + + G +++ + S+I+ K
Sbjct: 454 QMID-QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
++ +++G+ P+ + +++G C K+++ ++ G + N+ +
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
LV YC++GR+DE + + P +L+
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 16/245 (6%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D Y CL+ GK++ A+ VF +M + GI+P+ V+ +L+ G + LSLF
Sbjct: 541 MDGY-CLV---GKMEK---ALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFR 593
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + KP++ Y+ I G G + +G ++N TY ++ G K
Sbjct: 594 EMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKN 652
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
R FD ++E+ ++ + +I L ++ G+ R+++ K + G
Sbjct: 653 RCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTY 712
Query: 288 QKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFF------SGIIRLYALSDRLDD 339
++ + G V+E E+ ++ C +L H + I+R A ++D+
Sbjct: 713 SIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDE 772
Query: 340 VEYSV 344
+S+
Sbjct: 773 RNFSL 777
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S +V Y ++I G K D + ++EM+ GI P V+ LC R +D+ ++
Sbjct: 216 SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIR 329
FL+ ++ G N L+ Y G+ E + + + + P+V+ L G +
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDHIKGSYK 388
Y DV ++ G+ F +++ Y + D DLF +
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPNVFSYT----IMLNGYATKGCLVDMTDLFDLMLGDGIA 391
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
T++ L+ Y G+ K + NEM+
Sbjct: 392 PDIYTFNVLIKAYANCGMLDKAMIIFNEMR 421
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 123/326 (37%), Gaps = 55/326 (16%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQ-------FSWDALITSL--QSSSPKKAQL 91
N +I+ L + K T +++DI + + FS+ L+ SL Q S + L
Sbjct: 145 NIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204
Query: 92 VLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
L M +G C + Y+ +I K +V A +F M +GI PD ++S
Sbjct: 205 -----LRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSS 259
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-------------- 194
++ A LC + F + ++ PN+ TY+ I G+SS G
Sbjct: 260 VVHA-LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318
Query: 195 ---------------------VDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDS 232
+ + G + NV +Y +++G + K D
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
D F + M+ GI P I +++ LD+ + G K + + ++
Sbjct: 379 TDLF-DLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437
Query: 293 CYCELGRVDELEEQLETLTKCNQSPE 318
C +G++D+ E+ + +P+
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPD 463
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 135/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ V E D +G + Y LI+ GK ++ + M G+ P + +
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I A G++ AL LF+ M + PN+ Y+ I+ FS LGN
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK 681
Query: 209 GFSVNVQTYESL 220
NV+TY +L
Sbjct: 682 MVRPNVETYNAL 693
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 18/304 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I P + ++S+I C + + A + ++ P+ T++ I
Sbjct: 342 AEELYDEMLPRSIIPSTVTYSSMIDG-FCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLI 400
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ VD K AG N TY +LIHG + D ++ +EM+S G+
Sbjct: 401 AGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVC 460
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCY----CEL- 297
P++ +L+GLC KL K + I+ N + V+ Y C L
Sbjct: 461 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLI 520
Query: 298 --GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
G+ E EE E + P+ + +S +I RLD+ MG + S
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTIT--YSSMIDGLCKQSRLDEATQMFDSMGSKSFS-P 577
Query: 356 SAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRA-GLSGKLDSV 413
+I Y + D L+LF + + TY L+ G+R+ + G LD +
Sbjct: 578 DVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALD-I 636
Query: 414 INEM 417
EM
Sbjct: 637 FQEM 640
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 8/251 (3%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+ML+ G + Y ++ K+ + A+++ ME I P+ ++N++I
Sbjct: 205 LDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLW 264
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF I + +E P+ TY+ I+GF G + + + +V
Sbjct: 265 KDGRHSDAHNLF-IEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDV 323
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
T+ +LI+ +K F + Y+EM+ IIPS +++G C + +LD +
Sbjct: 324 VTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYL 383
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-----SPEVLLHFFSGIIR 329
G + L+ YC RVD+ + L +T+ + L+H F +
Sbjct: 384 TPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 443
Query: 330 LYALSDRLDDV 340
L A D L ++
Sbjct: 444 LNAAQDLLQEM 454
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI PD+ ++S+I + A +F+ M S+ + P+ T++ I
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM-GSKSFSPDVVTFNTLI 586
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ G VD + + G + TY +LI+G K + D ++EM+S G+
Sbjct: 587 TGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVY 646
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P + +L GL ++ +L+R + L+ L
Sbjct: 647 PDTITIRNMLTGLWSKEELERAVAMLEDL 675
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 12/212 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + LIA + + V + + M G+ ++ + +LI GD+
Sbjct: 387 KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNA 446
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYA-----ANIAA-----GF 210
A L + M+SS PN T + + G G + DA+ + A +I A G
Sbjct: 447 AQDLLQEMISS-GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGV 505
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+VQTY LI G + F + YEEM GI+P +++GLC + +LD
Sbjct: 506 EPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + + L+ YC+ G VD+
Sbjct: 566 MFDSMGSKSFSPDVVTFNTLITGYCKAGMVDD 597
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++F M+ + I PD +N +I SG A L + M+ + P+ T+ A I
Sbjct: 272 AHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE-RKINPDVVTFSALI 330
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + + TY S+I G K D+ + + + G
Sbjct: 331 NAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCS 390
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I ++ G C +++D L + G N L+ +C++G ++ ++
Sbjct: 391 PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDL 450
Query: 307 LETLTKCNQSPEVL 320
L+ + P V+
Sbjct: 451 LQEMISSGVCPNVV 464
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 18/287 (6%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G P FN+L+ LC D ++ AL LF M KPN T+
Sbjct: 132 LPFALSTFGKITKLGFHPTVVTFNTLLHG-LCVEDRISEALDLFHQMC-----KPNVVTF 185
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G V + G N TY +++ G K D S +M
Sbjct: 186 TTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 245
Query: 243 LG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK--LVKCYCELGR 299
+ IIP++ I +++GL + + F+ +I ++ ++ +C GR
Sbjct: 246 VSHIIPNVVIYNTIIDGLWKDGRHSDAHNL--FIEMQEKEIFPDIVTYNCMINGFCISGR 303
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+ E+ L+ + + +P+V+ FS +I + + + E M + + +
Sbjct: 304 WSDAEQLLQEMLERKINPDVVT--FSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTY 361
Query: 360 VEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
M+ C R A + + +L KG T++ L+AGY RA
Sbjct: 362 SSMIDGFCKQNRLDAAEHM-FYLTPTKGCSP-DIITFNTLIAGYCRA 406
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM ++ PD FN+LI +G V L LF M ++ TY I
Sbjct: 563 ATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM-GQRGIVADAITYITLI 621
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM-MSLG 244
GF + N+D + I++G + T +++ G + + E++ MS+G
Sbjct: 622 YGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQMSVG 680
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 4/189 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V A VF + +G++P FN+LI C SGDV L +M SE P+
Sbjct: 260 KAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVM-ESEGVCPDV 318
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+ A I+G G +D + + G N T+ +LI G K D + ++
Sbjct: 319 FTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQM 378
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G+ P + ++ GLC L + + + G K ++ L+ C+ G
Sbjct: 379 MLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDG- 437
Query: 300 VDELEEQLE 308
++E LE
Sbjct: 438 --DMESALE 444
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV ++ A + M A G+KPD F +LI C GD+ +AL + MV
Sbjct: 391 YNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMV 450
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + + A ISG G V + ++AGF + TY +I K D
Sbjct: 451 E-EGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDV 509
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ +EM S G +P + ++ GLC + ++ K L +L G N+
Sbjct: 510 KMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPND 563
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 7/251 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD-- 109
V + D + + S++ LI S K + +RL +++ C D
Sbjct: 264 VGNARLVFDEIPKRGLRPTVVSFNTLI----SGCCKSGDVEEGFRLKGVMESEGVCPDVF 319
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++ LI K + +F M +G+ P+ F +LI G V AL F++M
Sbjct: 320 TFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMM 379
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ + +P+ TY+A I+G +G++ + A+G + T+ +LI G K D
Sbjct: 380 LA-QGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGD 438
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+S M+ GI ++ GLC ++ L +L G+K ++
Sbjct: 439 MESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTM 498
Query: 290 LVKCYCELGRV 300
++ C+C+ G V
Sbjct: 499 VIDCFCKKGDV 509
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 109/270 (40%), Gaps = 7/270 (2%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G P FN L+ +GDV A +F+ + +P +++ ISG G+V+
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFD-EIPKRGLRPTVVSFNTLISGCCKSGDVEE 301
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + G +V T+ +LI+G K D ++EM G++P+ +++
Sbjct: 302 GFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLID 361
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C K+D + +L G + + L+ C++G + E + +T P
Sbjct: 362 GQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKP 421
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDR 375
+ + F+ +I ++ RM ++G+ ++ +C R +D
Sbjct: 422 DKIT--FTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGR--VHDA 477
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ D + +K TY ++ + + G
Sbjct: 478 GRMLTDMLSAGFKPDDPTYTMVIDCFCKKG 507
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 108 LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALS 164
LD+ A +SG + V A + T M + G KPD + +++ C C GDV
Sbjct: 456 LDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTY-TMVIDCFCKKGDVKMGFK 514
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
L + M S+ + P TY+A ++G G + A + G + N TY L+ G
Sbjct: 515 LLKEM-QSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGH 573
Query: 225 LKARDFDSVDRFYEE 239
K VD F E
Sbjct: 574 SKHGSSVDVDIFNSE 588
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW--Y 202
VF++LI A + SG A+ F +V+ ++ + + + L V+ W Y
Sbjct: 178 VFDALISAYVDSGFTPDAVQCFR-LVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALY 236
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ +G+ + + L+HG KA D + ++E+ G+ P++ ++ G C
Sbjct: 237 LEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKS 296
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ + G + L+ C+ GR+DE
Sbjct: 297 GDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDE 336
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 1/250 (0%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
S++ LI + + L +E + G + Y LI+ + N+ A++VF
Sbjct: 293 SFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFD 352
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M A +PD +N++I G A LF + S + P++ +Y++F+ F+
Sbjct: 353 DMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDL-ESRGFFPDAVSYNSFLYAFARE 411
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
GNV+ + + GF + TY ++IH K D + Y +M S G P +
Sbjct: 412 GNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITY 471
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ L K++ + +L G K L+ Y + G+ E EE + + +
Sbjct: 472 TVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLR 531
Query: 313 CNQSPEVLLH 322
P+ L +
Sbjct: 532 SGTRPDQLAY 541
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK A+ ++ M++ G PD + LI + + + A + M+
Sbjct: 436 YNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEML 495
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ KP +TY A I G++ G + + + +G + Y ++ L+ +
Sbjct: 496 NTG-VKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEP 554
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
FY+EM+ GI+P + E +L L K++ + ++
Sbjct: 555 KRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVR 597
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 110/258 (42%), Gaps = 9/258 (3%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSE 173
A SGK V +F M +G +PD FN+LI A L +G++ L++ E++ V
Sbjct: 267 ARSGKFNKV---QELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAI-ELLTEVRRS 322
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P+ TY+ IS S N++ + +A ++ TY ++I +
Sbjct: 323 GLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKA 382
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
++ + ++ S G P L +++VK + ++ G+ +E ++
Sbjct: 383 EQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHM 442
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
Y + G+ D + + ++P+V+ ++ +I ++++++ + M G+
Sbjct: 443 YGKQGQNDLALQLYRDMKSSGRNPDVIT--YTVLIDSLGKTNKIEEAAGMMSEMLNTGVK 500
Query: 354 FKSAEDVEMVICSYFRCA 371
+ +IC Y +
Sbjct: 501 -PTLRTYSALICGYAKAG 517
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 105/297 (35%), Gaps = 48/297 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-----YKPNSKT 181
A VF +M G P N L+ A + G L E+ V +E +K + +
Sbjct: 834 ARAVFNTMMKDGPSPTVDSINGLLQALIVDG------RLEELYVVVQELQDIGFKISKSS 887
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ F+ GN+ + K Y AAG+ ++ Y + + + V+ EM
Sbjct: 888 ILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEME 947
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P + I VL+ A + + + G + +E+ L+ YC R
Sbjct: 948 EAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPK 1007
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E L ++ +R L +LD + V GKQ L ++ E
Sbjct: 1008 ------EGLVLMDE------------MRTVGLEPKLDTYKSLVASFGKQQLVEQAEE--- 1046
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + KL R+ Y ++ YR +G K + + MK
Sbjct: 1047 ----------------LFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMK 1087
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 57/299 (19%), Positives = 120/299 (40%), Gaps = 31/299 (10%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYAC--LIALSGK-----------V 121
L+ L+ +P+ +Q++ E + + K + + L EY+ + +G +
Sbjct: 661 LLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCL 720
Query: 122 QNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+N F A VF+ M GIK ++ S++ G TA L ++ + N
Sbjct: 721 ENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNI 780
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAG------FSVNVQTYESLIHGSLKARDFDSV 233
Y I + L W A AG +VN + + +LI + ++
Sbjct: 781 SVYVDVIEAYGRL------KLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERA 834
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ MM G P++ + +L+ L +L+ + ++ L G+KI+++ ++
Sbjct: 835 RAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDA 894
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ G + E+++ + P +H + + +L ++ DVE + M + G
Sbjct: 895 FARAGNIFEVKKIYHGMKAAGYFPS--MHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGF 951
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 86 PKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
PK+ LVL +D+M G E LD Y L+A GK Q V A +F +++ G K D +
Sbjct: 1006 PKEG-LVL---MDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRS 1061
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
++ ++ SG A LF +M E +P T + + S G K +
Sbjct: 1062 FYHIMMKIYRNSGSHSKAQRLFSMM-KDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSN 1120
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+++ Y S+I ++ D+++ + +++ G+ P
Sbjct: 1121 LKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEP 1163
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L++M+K G + + Y LI G+ + A++VF M+ G +PD + +LI
Sbjct: 406 LEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAK 465
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+S++E M P++ TY I+ GN+ A ++ + + G N+
Sbjct: 466 AGFLDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIV 524
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LI KAR++ + Y +M + G P V+E L L+ ++ +
Sbjct: 525 TYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEM 584
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V++ E T+ + P V S +R++ L
Sbjct: 585 RQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRL 644
Query: 334 SD 335
D
Sbjct: 645 PD 646
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIAL K +N A+ ++ M+ G KPD ++ ++ G + A ++F M
Sbjct: 526 YNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEM- 584
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ Y + + GNV+ +WY + AG NV T SL+ L+
Sbjct: 585 RQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRL 644
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M++LG+ PS+
Sbjct: 645 PDAYNLLQNMVTLGLNPSL 663
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I GK N+ A +F M QG P+ +N LI + + TAL L+ M
Sbjct: 491 YSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQ 550
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +KP+ TY + G ++ + + + Y L+ KA +
Sbjct: 551 NAG-FKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNV 609
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ +Y M+ G++P++P +L +L + L+ ++
Sbjct: 610 EKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMV 655
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSK 180
+ V A+ V ME GI+PD +NSLI SG V+A L ++M P+
Sbjct: 192 RQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMG--IHPDVI 249
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T+ A I F G + K Y I N+ TY SLI+G D + M
Sbjct: 250 TFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFM 309
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+S G P+ ++ G C +++D L + G + L + YC+ G+
Sbjct: 310 VSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQF 369
Query: 301 DELEEQLETLTKCNQSPEV 319
+ E+ L + C P++
Sbjct: 370 NAAEKVLARMVSCGVLPDI 388
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 6/272 (2%)
Query: 54 QIKTTLD---SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
Q+ T LD ++ ++++LIT L S K + D M G +
Sbjct: 193 QVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSG--KWGVSARILSDMMRMGIHPDVIT 250
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ +I + GK + A + M + + P+ +NSLI G + A + MV
Sbjct: 251 FSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMV 310
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + PN+ TY+ ++G+ VD K G + TY +L G +A F
Sbjct: 311 S-KGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQF 369
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ ++ M+S G++P I +L+GLC K+++ L+ L + +
Sbjct: 370 NAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNII 429
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+K C+ +V++ +L SP+V+ +
Sbjct: 430 IKGMCKANKVEDAWYLFCSLALKGVSPDVITY 461
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 17/278 (6%)
Query: 37 VSSSNPL-----ISRLLQVPVSQIK------TTLDSVDIFAFNSSQFSWDALITSLQSSS 85
++ S PL SRLL V ++++K + ++I + +S+ LI S
Sbjct: 64 MAESRPLPSIVDFSRLL-VAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCS 122
Query: 86 PKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
+ L L L KM+K G E + + L+ V + AM + + G +P+
Sbjct: 123 --RLSLALSC-LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVV 179
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
++N++I + + V TAL + M +P+ TY++ I+ G + +
Sbjct: 180 IYNTIIDSLCENRQVDTALDVLNHM-EKMGIRPDVITYNSLITRLFHSGKWGVSARILSD 238
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G +V T+ ++I K + Y+EM+ + P+I ++ GLC
Sbjct: 239 MMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGL 298
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
LD K L F++ G+ N LV YC+ RVD+
Sbjct: 299 LDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDD 336
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 2/170 (1%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL+LF M S P+ + + + L +A+ + G S ++ ++ +LI
Sbjct: 57 ALTLFCDMAESRPL-PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLI 115
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ +MM LG PSI ++ G C ++ S + ++G G++
Sbjct: 116 DCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYE 175
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
N + ++ CE +VD + L + K P+V+ + S I RL+
Sbjct: 176 PNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVIT-YNSLITRLF 224
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 11/212 (5%)
Query: 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMH 129
F+++ LI + + KKA + E + +G + + Y LI ALS K Q V
Sbjct: 662 FTYNILINGHCKEGNVKKALEIFE---NMSRRGVRATVVTYTALIYALSKKGQ-VQETDK 717
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
+F +GI+PD ++N+LI + SG++ A FEIM E+ + P+ TY+ +
Sbjct: 718 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA---FEIMGEMEKKRIAPDDVTYNTLMR 774
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G LG VD K G ++ TY +LI G D R EMM+ G P
Sbjct: 775 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 834
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ +++GLC + D ++ +K ++ G
Sbjct: 835 TLLTYNALIQGLCKNGQGDDAENMVKEMVENG 866
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 12/303 (3%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ + M E GI P+ + ++I G V A+ +F+ M++ E KP
Sbjct: 533 GRVQ---AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 589
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A I G+ G +D + + G ++ V TY L+H
Sbjct: 590 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 649
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM G+ P + ++ G C + + + + G + L+ +
Sbjct: 650 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G+V E ++ + + P+++L ++ +I ++ S +D +G M K+ + +
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVL--YNALINSHSTSGNIDRAFEIMGEMEKKRI---AP 764
Query: 358 EDVEMVICSYFRC--AAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+DV C D +D + + + TY+ L++GY G +
Sbjct: 765 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 824
Query: 415 NEM 417
NEM
Sbjct: 825 NEM 827
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI N+ A + ME + I PD +N+L+ G V A L + M
Sbjct: 734 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM- 792
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY+ ISG+S G+V + + GF+ + TY +LI G K
Sbjct: 793 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 852
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D + +EM+ GI P ++EGL
Sbjct: 853 DDAENMVKEMVENGITPDDSTYISLIEGL 881
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Query: 111 YACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC---LCSGDVVTALSL 165
Y+ I L G K +V + + A+G+K + +N+ I L G V L+L
Sbjct: 230 YSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL 289
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
E E N TY I GFS++G ++ + + G +V Y S+I +
Sbjct: 290 ME----KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNC 345
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
++ + ++EM G+IPS ++ G+C +++ + + + G G +N
Sbjct: 346 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 405
Query: 286 MAQKLVKCYCELGRVDE 302
+ L+ YCE G VDE
Sbjct: 406 IFNTLIDGYCESGMVDE 422
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK 102
++ L++ V K L+S D+FA+NS L + +A+ +L +++ +
Sbjct: 419 MVDEALRLQVVMEKKGLES-DVFAYNSIASGLCKL------NRKDEAKGLLFSMVERGVS 471
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
N + LI + K N A VF ME +G P+ +N LI G++ A
Sbjct: 472 PNTM---SFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEA 528
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L + + + P+ T + I G G VD K + G NV TY ++I
Sbjct: 529 HKLKDEL-ENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 587
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIP 247
G K + + Y+EM G+ P
Sbjct: 588 GLSKDGRSEEAFKLYDEMKETGLTP 612
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS---GDVVTAL--SLFEIMVSSEEYKPN 178
V A+ + ME +G++ D +NS I + LC D L S+ E VS PN
Sbjct: 420 VDEALRLQVVMEKKGLESDVFAYNS-IASGLCKLNRKDEAKGLLFSMVERGVS-----PN 473
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ ++ I + GN + + G N+ TY LI G K + + +
Sbjct: 474 TMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKD 533
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLD 266
E+ + G+IP + ++ G C K+D
Sbjct: 534 ELENRGLIPDVYTCTSLIHGECIDGKVD 561
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 23/301 (7%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ AM F M+ G+KP ++ +N+LI +G ++ L E+M KPN +TY
Sbjct: 98 NMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTY 157
Query: 183 DAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ + + + + +A N Y IA+G +V TY ++ + D + EM
Sbjct: 158 NVLVRAWCNKKRITEAWNVVYKM-IASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQ 216
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL-----LGGGWKINENMA--QKLVKCY 294
+ G+ P+ ++ G C K R++ L+F LG I+ N+ L+K +
Sbjct: 217 NNGVQPNERTCGIIMSGYC---KEGRIREALRFAYRMKELG----IHPNLVIFNSLIKGF 269
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
+ D ++E L + + P+V+ FS I+ ++ + ++ M K G+
Sbjct: 270 VAIMDRDGVDEVLNLMEEFGVKPDVIT--FSTIMNAWSTAGFMEKCREIFDDMVKAGIE- 326
Query: 355 KSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
A ++ Y R ++ +L IK ++ + +++G+ A GK+D
Sbjct: 327 PDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSA---GKMDYA 383
Query: 414 I 414
+
Sbjct: 384 V 384
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 128/321 (39%), Gaps = 14/321 (4%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G++ L Y L+A + + + +E G+ PDS FN++I A SG++ +A
Sbjct: 43 GHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESA 102
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLI 221
+ F M KP + TY+ I G+ G + K G N++TY L+
Sbjct: 103 METFWKM-QENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLV 161
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ +M++ GI P + + + LD+ + + + G +
Sbjct: 162 RAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQ 221
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
NE ++ YC+ GR+ E + + P +++ F S I A+ DR D V+
Sbjct: 222 PNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVI-FNSLIKGFVAIMDR-DGVD 279
Query: 342 YSVGRMGKQG-----LSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDF 396
+ M + G ++F + + +C ++F D +K + Y
Sbjct: 280 EVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCR-----EIFDDMVKAGIEPDAHAYSI 334
Query: 397 LVAGYRRAGLSGKLDSVINEM 417
L GY RA K + ++ M
Sbjct: 335 LAKGYVRAQEPEKAEELLTTM 355
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)
Query: 101 LKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
++ N +E C I +SG K + A+ M+ GI P+ +FNSLI + D
Sbjct: 215 MQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMD 274
Query: 159 VVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+ +M EE+ KP+ T+ ++ +S+ G ++ + + + AG +
Sbjct: 275 RDGVDEVLNLM---EEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHA 331
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y L G ++A++ + + M+ G P++ I V+ G C+ K+D +
Sbjct: 332 YSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMC 391
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G N + L+ + E + + EE L+ +T+ PE
Sbjct: 392 QRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPE 433
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 36/229 (15%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y L+ + + A +V M A GI+PD +N++ A G + A +
Sbjct: 154 LRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVI- 212
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + + +PN +T +SG+ G + ++ G N+ + SLI G +
Sbjct: 213 LEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAI 272
Query: 228 RDFDSVDR-----------------------------------FYEEMMSLGIIPSIPIL 252
D D VD +++M+ GI P
Sbjct: 273 MDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAY 332
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ +G ++ ++ + L ++ G++ N + ++ +C G++D
Sbjct: 333 SILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMD 381
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 131/322 (40%), Gaps = 24/322 (7%)
Query: 53 SQIKTTLDSVDIFAF---NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
+IK D D A N FS++ ++ + K LV L ++ G+ D
Sbjct: 351 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT----KGCLVDMTDLFDLMLGDGIAPD 406
Query: 110 EYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI + AM +F M G+KPD + ++I A G + A+ F
Sbjct: 407 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 466
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+ Y+ I GF + G++ + + + G +++ + S+I+ K
Sbjct: 467 QMID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 525
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
++ +++G+ P + +++G C K+++ ++ G + N +
Sbjct: 526 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 585
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV YC++GR+DE + + P +L +S II D + GR
Sbjct: 586 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL--YSIII----------DGLFQAGRT 633
Query: 348 GKQGLSFKSAED--VEMVICSY 367
+ F + + M IC+Y
Sbjct: 634 VPAKMKFHEMTESGIAMDICTY 655
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 21/308 (6%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++ A VF +M +G PD +N ++ G +V LF++M+ + P+
Sbjct: 351 GKIKE---ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPD 406
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I +++ G +D + G +V TY ++I + D +
Sbjct: 407 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 466
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ G+ P +++G C L + K + ++ G ++ ++ C+LG
Sbjct: 467 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 526
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
RV + + + P+ ++ +S ++ Y L +++ M G+ E
Sbjct: 527 RVMDAQNIFDLTVNVGLHPDAVV--YSMLMDGYCLVGKMEKALRVFDAMVSAGI-----E 579
Query: 359 DVEMVICS----YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
+V C+ Y + D L LF + ++ K Y ++ G +AG +V
Sbjct: 580 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG-----RTV 634
Query: 414 INEMKFAE 421
+MKF E
Sbjct: 635 PAKMKFHE 642
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ V A ++F G+ PD+ V++ L+ G + AL +F+ MVS+ +PN
Sbjct: 524 KLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG-IEPNV 582
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y ++G+ +G +D + + G + Y +I G +A + E
Sbjct: 583 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHE 642
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M GI I VL GL R D K L KIN ++ + R
Sbjct: 643 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 702
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+E ++ ++++ P V+ +
Sbjct: 703 VEEAKDLFASISRSRLVPNVVTY 725
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 20/325 (6%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQ-------FSWDALITSL--QSSSPKKAQL 91
N +I+ L + K T +++DI + + FS+ L+ SL Q S + L
Sbjct: 158 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 217
Query: 92 VLEWRLDKMLKGNESC---LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
L M +G C + Y +I K +V A +F M +GI PD +NS
Sbjct: 218 -----LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 272
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
++ A LC + F + ++ PN+ TY+ I G+SS G + +
Sbjct: 273 VVHA-LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 331
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+V T L+ K ++ M G P + +L G + L +
Sbjct: 332 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 391
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+LG G + L+K Y G +D+ + P+V+ + +I
Sbjct: 392 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YRTVI 449
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLS 353
++DD +M QG++
Sbjct: 450 AALCRIGKMDDAMEKFNQMIDQGVA 474
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 107/270 (39%), Gaps = 5/270 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVD 196
G PD ++ L+ + G A L +M PN Y+ I GF G+V+
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 249
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G ++ TY S++H KAR D + F +M++ ++P+ ++
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 309
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G + + K + + L+ C+ G++ E + +T+ Q+
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 369
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P+V ++ ++ YA L D+ M G++ ++I +Y C D+
Sbjct: 370 PDVF--SYNIMLNGYATKGCLVDMTDLFDLMLGDGIA-PDFYTFNVLIKAYANCGMLDKA 426
Query: 377 DLFLDHIKG-SYKLRRATYDFLVAGYRRAG 405
+ + ++ K TY ++A R G
Sbjct: 427 MIIFNEMRDHGVKPDVVTYRTVIAALCRIG 456
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S NV Y ++I G K D + ++EM+ GI P + V+ LC R +D+ ++
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIR 329
FL+ ++ N L+ Y G+ E + + + + P+V+ L G +
Sbjct: 289 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 348
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDHIKGSYK 388
Y DV ++ G+ F +++ Y + D DLF +
Sbjct: 349 KYGKIKEARDVFDTMAMKGQNPDVFS----YNIMLNGYATKGCLVDMTDLFDLMLGDGIA 404
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
T++ L+ Y G+ K + NEM+
Sbjct: 405 PDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/250 (18%), Positives = 95/250 (38%), Gaps = 44/250 (17%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L+ K+ + + +F M +GIKP + +++ +I +G V A
Sbjct: 577 GIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPA 636
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
F M S G ++++ TY ++
Sbjct: 637 KMKFHEMTES------------------------------------GIAMDICTYNIVLR 660
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K R FD ++E+ ++ + +I L +++G+ R+++ K +
Sbjct: 661 GLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVP 720
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFF------SGIIRLYALS 334
N ++ + G V+E E+ ++ C + +L H + I+R A
Sbjct: 721 NVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYL 780
Query: 335 DRLDDVEYSV 344
++D+ +S+
Sbjct: 781 SKIDERNFSL 790
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C I + K + A +F M A G+ P + + SLI +V L + +
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELL-VEM 408
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + G S G++D IA+G NV Y +LI L+ F
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R +EM GI P I ++ GL +++D +SFL ++ G K N
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y E ++ ++ + +C P +L +G+I Y +++ + + M Q
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVL--CTGLINEYCKKEKVIEACSAYRSMVDQ 586
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGK 409
G+ A+ +++ F+ D + ++G +Y L+ G+ + G K
Sbjct: 587 GI-LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645
Query: 410 LDSVINEM 417
S+ +EM
Sbjct: 646 ASSIFDEM 653
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 122/300 (40%), Gaps = 23/300 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DIF +NS LI L ++ +A+ L ++ LK N + +SG +
Sbjct: 486 DIFCYNS-------LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF-----ISGYI 533
Query: 122 QNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ FA M G+ P+ + LI V+ A S + MV + ++
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVD-QGILGDA 592
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
KTY ++G VD + + G + +V +Y LI+G K + ++E
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P++ I +L G C ++++ K L + G N ++ YC+ G
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG--KQGLSFKSA 357
+ E + + P+ ++ L RL+DVE ++ G K+G + +A
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVY-----TTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 43/265 (16%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M +KG Y +I K ++ A +F M+ +G+ PDS V+ +L+ C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 156 SGDVVTALSLF-----------------------------------EIMVSSEEY--KPN 178
DV A+++F +M S + KPN
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GN++A + + A V TY SL++G K + ++
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864
Query: 239 EMMSLGIIP-----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E ++ GI P S+ I + EG+ + + + F K + G K++ + + L+
Sbjct: 865 EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSG 924
Query: 294 YCELGRVDELEEQLETLTKCNQSPE 318
+ ++G ++ E+ +E + + P+
Sbjct: 925 FAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 108/300 (36%), Gaps = 46/300 (15%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+V AL L E M+ + P TYD I G + ++ + G S++ TY
Sbjct: 257 NVDGALKLKESMIC-KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-------------------------------- 245
LI G LK R+ D+ EM+S GI
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 246 ---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
IP ++EG C + + + L + I+ +VK C G +D
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-- 360
++ + P V++ ++ +I+ + + R D + M +QG+ A D+
Sbjct: 436 AYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGI----APDIFC 489
Query: 361 -EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + D FL + ++ K TY ++GY A D + EM+
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Query: 111 YACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC---LCSGDVVTALSL 165
Y+ I L G K +V + + A+G+K + +N+ I L G V L+L
Sbjct: 226 YSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTL 285
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
E E N TY I GFS++G ++ + + G +V Y S+I +
Sbjct: 286 ME----KEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNC 341
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
++ + ++EM G+IPS ++ G+C +++ + + + G G +N
Sbjct: 342 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 401
Query: 286 MAQKLVKCYCELGRVDE 302
+ L+ YCE G VDE
Sbjct: 402 IFNTLIDGYCESGMVDE 418
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK 102
++ L++ V K L+S D+FA+NS L + +A+ +L +++ +
Sbjct: 415 MVDEALRLQVVMEKKGLES-DVFAYNSIASGLCKL------NRKDEAKGLLFSMVERGVS 467
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
N + LI + K N A VF ME +G P+ +N LI G++ A
Sbjct: 468 PNTM---SFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEA 524
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L + + + P+ T + I G G VD K + G NV TY ++I
Sbjct: 525 HKLKDEL-ENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 583
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIP 247
G K + + Y+EM G+ P
Sbjct: 584 GLSKDGRSEEAFKLYDEMKETGLTP 608
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS---GDVVTAL--SLFEIMVSSEEYKPNSKT 181
A+ + ME +G++ D +NS I + LC D L S+ E VS PN+ +
Sbjct: 419 ALRLQVVMEKKGLESDVFAYNS-IASGLCKLNRKDEAKGLLFSMVERGVS-----PNTMS 472
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I + GN + + G N+ TY LI G K + + +E+
Sbjct: 473 FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE 532
Query: 242 SLGIIPSIPILEKVLEGLCARRKLD 266
+ G+IP + ++ G C K+D
Sbjct: 533 NRGLIPDVYTCTSLIHGECIDGKVD 557
>gi|55733932|gb|AAV59439.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 498
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 13/286 (4%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-YKPNSKTYDAFISGFSSLGNVDAMN 199
PD A++N+L+ + + SG + F + PN+ +Y+ I+ F VD M
Sbjct: 172 PDQALYNALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHME 231
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A+G + TY ++I G L A ++ ++ ++EM+S + P +L G
Sbjct: 232 ATLLSLDASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGY 291
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQS 316
+ +++ + +++ + ++ YC+ VD ++EE L+ L +
Sbjct: 292 AHAGMIYKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYR 351
Query: 317 P--EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD 374
P VLL IR YA ++ +E + ++ + + + +I SYF+C A D
Sbjct: 352 PWLAVLL------IRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVD 405
Query: 375 RLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
+L F+ + +KL R+ Y + Y + ++ V++EM+F
Sbjct: 406 KLAHFIRQAEEAGWKLCRSLYHCKMVMYGKQHRLPEMHGVLDEMEF 451
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN----ESCLDEYAC 113
L+ + + N + +++ L+ +L + K+A+ +L + +K N + +D Y C
Sbjct: 208 LNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGY-C 266
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI G+VQN A +F +M +G+ P+ +N +I S V A++L V +
Sbjct: 267 LI---GEVQN---AKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR-EVLHK 319
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN+ TY + I GF LG + + G +V TY SL+ K ++ D
Sbjct: 320 NMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKA 379
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ +M GI P+ +++GLC + + + LL G +IN ++
Sbjct: 380 TALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISG 439
Query: 294 YCELGRVDE 302
C+ G +DE
Sbjct: 440 LCKEGMLDE 448
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L G+V+ ++H + AQG + D + +L+ G+ +AL L M+
Sbjct: 90 LCLKGEVKK---SLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLR-MIEDRS 145
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+PN Y+ I G V+ Y+ A G NV TY +LI+G A
Sbjct: 146 TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAF 205
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
EM+ I P++ +++ LC K+ K+ L + G K N L+ Y
Sbjct: 206 GLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGY 265
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C +G V ++ T+ + +P V + ++ +I S R+D+
Sbjct: 266 CLIGEVQNAKQMFHTMVQKGVNPNV--YSYNIMIDRLCKSKRVDE 308
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 147/350 (42%), Gaps = 11/350 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
D V F Q S+ L+ L + + A +L D+ + N + Y +I
Sbjct: 104 DKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPN---VVMYNTIIDGL 160
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K + V A +++ M+A+GI P+ +++LI +G ++ A L M+ + PN
Sbjct: 161 CKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMIL-KNINPN 219
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY + G V A G NV +Y +L+ G + + + +
Sbjct: 220 VYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFH 279
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M+ G+ P++ +++ LC +++D + L+ +L N L+ +C+LG
Sbjct: 280 TMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLG 339
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ + L+ + Q +V+ ++ ++ + LD +M ++G+
Sbjct: 340 RITSALDLLKEMYHRGQPADVVT--YTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397
Query: 359 DVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
++ +C R +L L +KG ++ TY+ +++G + G+
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHL-LVKGC-RINVWTYNVMISGLCKEGM 445
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 38/237 (16%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPN 178
K+++ P A+ +F M+ +GI+PD N LI C C G + + ++ ++ Y+PN
Sbjct: 22 KMKHYPTAISLFKQMQVKGIEPDLFTLNILI-NCFCHLGQMTFSFTVLGKILKLG-YQPN 79
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-------------------------- 212
+ T + + G G V ++ +A GF +
Sbjct: 80 TITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLR 139
Query: 213 ---------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
NV Y ++I G K + + Y EM + GI P++ ++ G C
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+L L ++ N L+ C+ G+V E + L +TK P V+
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVV 256
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 5/208 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N + +S++ +I L +S +A +L L K + N Y+ LI K+ +
Sbjct: 285 GVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVT---YSSLIDGFCKLGRI 341
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ + M +G D + SL+ A + ++ A +LF M +PN TY A
Sbjct: 342 TSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM-KERGIQPNKYTYTA 400
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G G K + + G +NV TY +I G K D +M G
Sbjct: 401 LIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
IP E ++ L + + D+ + L
Sbjct: 461 CIPDAVTFEIIIRSLFEKDQNDKAEKLL 488
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 23/317 (7%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALS 164
A L L G + V A F S + + PD FN++I LC +GDV +
Sbjct: 161 ALLAGLVG-AKRVDLAEKAFRSALRRRVSPDIYTFNTVISG-LCRIGQLRKAGDVAKDIK 218
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ + P+ TY++ I G+ GN+ ++ + AG S T+ LI
Sbjct: 219 AWGL-------APSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G K + + R +EEM GI S+ ++ GLC+ K++ ++ + G
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
NE ++K +C+ G + + + ++ +T+ N P+V+++ +I +Y +++D
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI--LIDVYRRLGKMEDAM 389
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAG 400
M K+G+S + +I + R + LD +K + TY+ L+
Sbjct: 390 AVKEAMAKKGIS-PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448
Query: 401 YRRAGLSGKLDSVINEM 417
G K +++EM
Sbjct: 449 LCCKGEVRKAVKLLDEM 465
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 97/270 (35%), Gaps = 41/270 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K N A+ VF M+ QGI +NSLI G V + L E M
Sbjct: 267 FGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM- 325
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------------------------- 202
PN T+ + GF G + N W
Sbjct: 326 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKM 385
Query: 203 -------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A G S NV TY LI G ++ D+ S +EM GI + +
Sbjct: 386 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 445
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC + ++ + L + G + N +++ +C+ G + E + KC +
Sbjct: 446 IGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK 505
Query: 316 SPEVL-----LHFFSGIIRLYALSDRLDDV 340
V+ + +F I ++ +D L+++
Sbjct: 506 RANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y CLI + + A + M+ +GI+ D +N LI A C G+V
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK 457
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + M S +PN TY+ I GF GN+ + + NV TY I
Sbjct: 458 AVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ D + EM+ ++P+ E + EG+
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 127 AMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A V+ M + G+KPD+ +N LI C +V F ++S + P+ TY+
Sbjct: 209 AKEVYDEMLKTYGVKPDTYTYNILIRG-FCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTL 267
Query: 186 ISGFSSLGNVDAMNKWYAANIAAG-------FSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ G G + A N+ G S +V TY +LI G + ++ D E
Sbjct: 268 VDGLCRAGKIKV-----AHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILE 322
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-QKLVKCYCEL 297
EM G+ P+I +++GLC +K D++K L+ + G G I + L+ +C
Sbjct: 323 EMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCA 382
Query: 298 GRVDELEEQLETLTK 312
G +DE + E + K
Sbjct: 383 GNLDEAFKVFENMKK 397
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 13/280 (4%)
Query: 74 WDALITSLQSSSPKKAQLVLE--WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
WD + L S KA +V E KM + G E + Y L + + A
Sbjct: 185 WDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRY 244
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F +M +G+ P +N +I S V TA FE M P+ TY+ I+G+
Sbjct: 245 FNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEM-KERRISPDVVTYNTMINGYY 303
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ ++ K++ V +Y ++I G + D R +EEM S GI P+
Sbjct: 304 RIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAV 363
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLET 309
+L GLC K+ ++ +K ++ +N + +L+ C C+ G++D + L+
Sbjct: 364 TYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKA 423
Query: 310 LTKCNQSPE-----VLLHFF--SGII-RLYALSDRLDDVE 341
+ + + E VL+ F SG+ R L D+L + E
Sbjct: 424 MIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKE 463
>gi|225441965|ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Vitis vinifera]
Length = 680
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PDS + ++IC L G AL + ++ + +KP T++A + G L + +
Sbjct: 487 PDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHGLFKLQQANVATE 546
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + ++ G + N TY +I G ++ D RF+++++ + + +L+GLC
Sbjct: 547 VFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHDNFVYAAILKGLC 606
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV- 319
KL+ FL L+ G +N L+ C+LG E ++ + K +P+
Sbjct: 607 RSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQEMKKNGLTPDAV 666
Query: 320 ---LLHFFSG 326
+LH G
Sbjct: 667 TWRILHKLHG 676
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 11/261 (4%)
Query: 65 FAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
F + S+ ++ L+ +L + + KA+ V++ L+K + Y + L + N
Sbjct: 377 FGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCL---MNN 433
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
++V M +PD N++I G V AL + + MV + P+S TY
Sbjct: 434 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYT 493
Query: 184 AFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G +LG +A++ GF V T+ +++HG K + + + M+S
Sbjct: 494 TIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVS 553
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW--KINENMA-QKLVKCYCELGR 299
G+ + +++GL ++D K F ++ W K+++N ++K C G+
Sbjct: 554 DGVAANTITYTIIIDGLFESDQIDEAKRFWDDVI---WPSKVHDNFVYAAILKGLCRSGK 610
Query: 300 VDELEEQLETLTKCNQSPEVL 320
++E + L L C + V+
Sbjct: 611 LNEACDFLYELVDCGVTLNVV 631
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMN 199
PD N LI L S L +F ++++ E+ P+ Y+ I S + +
Sbjct: 129 PDQRTCNVLIARLLDSRTPHATLHVFRGLIAARPEFVPSLINYNRLIHQLCSFSQPNEAH 188
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + G N +Y +LI G K + S + ++EM+ G++P+ +L+G+
Sbjct: 189 GLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGVVPNSLTYSVLLKGV 248
Query: 260 CARRKLDRVKSFL 272
+R ++R + +
Sbjct: 249 LCKRDVERGRELM 261
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 13/280 (4%)
Query: 74 WDALITSLQSSSPKKAQLVLE--WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
WD + L S KA +V E KM + G E + Y L + + A
Sbjct: 185 WDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRY 244
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F +M +G+ P +N +I S V TA FE M P+ TY+ I+G+
Sbjct: 245 FNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEM-KERRISPDVVTYNTMINGYY 303
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ ++ K++ V +Y ++I G + D R +EEM S GI P+
Sbjct: 304 RIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAV 363
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLET 309
+L GLC K+ ++ +K ++ +N + +L+ C C+ G++D + L+
Sbjct: 364 TYSTLLPGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKA 423
Query: 310 LTKCNQSPE-----VLLHFF--SGII-RLYALSDRLDDVE 341
+ + + E VL+ F SG+ R L D+L + E
Sbjct: 424 MIRLSIPTEAGHYGVLIENFCKSGVYDRAVKLLDKLIEKE 463
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 135/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ V E D +G + Y LI+ GK ++ + M G+ P + +
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I A G++ AL LF+ M + PN+ Y+ I+ FS LGN
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK 681
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
NV+TY +L + +++ + +EM+ P+ +E ++E L +L ++
Sbjct: 682 MVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKL 741
Query: 269 KSFLK 273
+ F++
Sbjct: 742 RKFMQ 746
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMH 129
F+++ LI + + KKA + E + +G + + Y LI ALS K Q V
Sbjct: 657 FTYNILINGHCKEGNVKKALEIFE---NMSRRGVRATVVTYTALIYALSKKGQ-VQETDK 712
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFIS 187
+F +GI+PD ++N+LI + SG++ A FEIM E+ + P+ TY+ +
Sbjct: 713 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA---FEIMGEMEKKRIAPDDVTYNTLMR 769
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G LG VD K G ++ TY +LI G D R EMM+ G P
Sbjct: 770 GLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 829
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +++GLC + D ++ +K ++ G +++ L++
Sbjct: 830 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 874
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 12/303 (3%)
Query: 119 GKVQNVPFAMHVFTSM-EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+VQ A+ + M E GI P+ + ++I G V A+ +F+ M++ E KP
Sbjct: 528 GRVQ---AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKP 584
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+A I G+ G +D + + G ++ V TY L+H
Sbjct: 585 EAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELV 644
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEM G+ P + ++ G C + + + + G + L+ +
Sbjct: 645 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 704
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G+V E ++ + + P+++L ++ +I ++ S +D +G M K+ + +
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVL--YNALINSHSTSGNIDRAFEIMGEMEKKRI---AP 759
Query: 358 EDVEMVICSYFRC--AAYDRLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+DV C D +D + + + TY+ L++GY G +
Sbjct: 760 DDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIR 819
Query: 415 NEM 417
NEM
Sbjct: 820 NEM 822
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 7/189 (3%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
++ ALI +L KK Q+ +L + + +G L Y LI N+ A +
Sbjct: 693 TYTALIYALS----KKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 748
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
ME + I PD +N+L+ G V A L + M + +P+ TY+ ISG+S
Sbjct: 749 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM-TERGIQPDLVTYNTLISGYS 807
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G+V + + GF+ + TY +LI G K D + +EM+ GI P
Sbjct: 808 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 867
Query: 251 ILEKVLEGL 259
++EGL
Sbjct: 868 TYISLIEGL 876
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F Q S +AL +L + + K A+ +LE+ + N+S L+ Y L+ +G V+ V
Sbjct: 92 GFKPDQSSCNALFDALVDAGAVKAAKSLLEY--PDFVPKNDS-LEGYVRLLGENGMVEEV 148
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYD 183
VF S++ G P ++ FN + ACL G L+E+M+ S + +T
Sbjct: 149 ---FDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNIDVETVG 205
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I F + V + + G V+ + +LI+G K + +D V M+++
Sbjct: 206 CLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAM 265
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
PSI ++++ GL RRK D L G+ + M ++K +C++G + E
Sbjct: 266 KCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAE 324
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF ++ +G PD ++ ++I G + A L+ M+ + PN TY+ I
Sbjct: 290 AFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQ-KGLVPNEYTYNVMI 348
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ + + K Y G++ NV +Y ++I G D + EM GI
Sbjct: 349 YGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIA 408
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ +++GLC +L + + L LL G + + + L+KC C++G +
Sbjct: 409 RDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTE 463
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 8/196 (4%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G KPD + N+L A + +G V A SL E ++ P + + + ++ G V+
Sbjct: 92 GFKPDQSSCNALFDALVDAGAVKAAKSLLEY----PDFVPKNDSLEGYVRLLGENGMVEE 147
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI--LEKV 255
+ + + GF + ++ + LK D V + YE M+ G+ +I + + +
Sbjct: 148 VFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNIDVETVGCL 207
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT--KC 313
++ CA K+ L+ +L G ++ + L+ +C+ + D + E L + KC
Sbjct: 208 IKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMKC 267
Query: 314 NQSPEVLLHFFSGIIR 329
N S +G+++
Sbjct: 268 NPSIYTYQEIINGLLK 283
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 7/199 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+EY + + G KV++ A ++ M +G + ++++I G ALSLF
Sbjct: 340 NEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLF 399
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M S + + +Y++ I G G + + G +V ++ LI K
Sbjct: 400 HEM-SRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCK 458
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D + R ++M + P + ++ GL + + +L +L WK+ NM
Sbjct: 459 VGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKML--SWKLKPNM 516
Query: 287 A--QKLVKCYCELGRVDEL 303
+ L+ C R+D++
Sbjct: 517 QTFEHLIDCLKRENRLDDI 535
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 7/184 (3%)
Query: 111 YACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y+ +I+ L GK A+ +F M +GI D +NSLI G++ A +L
Sbjct: 379 YSTMISGLYLHGKTDE---ALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLN 435
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
++ + +P+ ++ I +G+ + + T++ +I G K
Sbjct: 436 KLLI-QGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKK 494
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
DF + +M+S + P++ E +++ L +LD + L + G+++ ++
Sbjct: 495 GDFAQGMEWLLKMLSWKLKPNMQTFEHLIDCLKRENRLDDILIVLDLMFREGYRLEKSRI 554
Query: 288 QKLV 291
LV
Sbjct: 555 CSLV 558
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Query: 90 QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+L L+ D G + + Y LI + GK A+ V M+ + I+P + FN+L
Sbjct: 343 KLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTL 402
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ AC S AL ++E M +S + PN+ TY+A IS S G++ + + + G
Sbjct: 403 MIACNTSNQWQEALRVYEQMAASS-HPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKG 461
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+V TY SLI KA ++ + +EEM G +P++
Sbjct: 462 CERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNV 501
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y+ LI+ K A+ +F M +G P+ +NSLI AC
Sbjct: 460 KGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEK 519
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
A +FE M + +P+ +Y A I + G
Sbjct: 520 AAEVFEQM-QRQGCRPDVVSYTALIQAYERGGQ 551
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSME 135
+SL S+ K + L +L + ++G E C+ Y LI + A VF M+
Sbjct: 470 SSLISACEKAGEWKLALQLFEEMRG-EGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQ 528
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
QG +PD + +LI A G AL+ FE M+ + P+S Y+ I
Sbjct: 529 RQGCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 116/286 (40%), Gaps = 12/286 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++ +H ME G+KPD ++ LI G V A+ L+E M S Y P
Sbjct: 423 SGRIDEAVILLH---EMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIY-P 478
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
NS A ISG G + ++ + + + + Y +I G K + R Y
Sbjct: 479 NSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSY 538
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++++ GI P+I ++ G C + KL L + G L+ YCE
Sbjct: 539 KQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEE 598
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G + + + L + P + ++ +++ RL + + M +GL F
Sbjct: 599 GDMHSMFDMLHEMEAKAIKPTQIT--YTVVVKGLCKEGRLHESVQLLKYMYARGL-FPDQ 655
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDH---IKGSYKLRRATYDFLVAG 400
VI S+ C A+D F H ++ S + TY+ L+ G
Sbjct: 656 ITYNTVIQSF--CKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLING 699
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ ++A G+ P + N ++ LC + F EE+ P+ +++A +SGF
Sbjct: 222 VYNEIKASGV-PQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGF 280
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G+VD ++ I G +V +Y L+HG A + F +M + G+ P I
Sbjct: 281 CKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDI 340
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK-----------LVKCYCELG 298
+ G R L L+ G WK+ + M L+ +C++G
Sbjct: 341 VTYNILANGF---RILG--------LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMG 389
Query: 299 RVDE 302
++E
Sbjct: 390 NIEE 393
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ ME G++PD +N L G + A + + M+ + P+ TY I
Sbjct: 324 ALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNG-LNPDLVTYTILI 382
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GN++ K ++ G +++ TY L+ K+ D EM +G+
Sbjct: 383 CGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLK 442
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC R ++ + + N + ++ E G + E +
Sbjct: 443 PDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMY 502
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+++TK + + E++L ++ +I YA + + S ++ ++G+S
Sbjct: 503 FDSVTKSDVAEEIIL--YNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 547
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 1/174 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + +++ G+ P S + +L+ GD+ + + M ++ KP TY +
Sbjct: 569 AVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEM-EAKAIKPTQITYTVVV 627
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + A G + TY ++I KA D + + +M+ +
Sbjct: 628 KGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQ 687
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
PS ++ GLC L L L ++ + ++K +C G V
Sbjct: 688 PSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDV 741
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K ++ A+ V M A PD FN+LI A GDV AL L + E +PN
Sbjct: 393 KCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIR-RELEPNQ 451
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I GF G V + I G + +V T +LIHG + + D E+
Sbjct: 452 LSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREK 511
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M ++P I ++ GLC +R L K+ L +L
Sbjct: 512 MAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEML 548
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 45/264 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K + + A ++ M Q ++PD V+ +LI + S + A +FE M
Sbjct: 524 YNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFME 583
Query: 171 SSEEYK----------------------------------PNSKTYDAFISGFSSLGNVD 196
Y+ P+ TY I G++ G++
Sbjct: 584 EKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIK 643
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A ++ + N+ TY SLI G + DS + + M S G+ P++ ++
Sbjct: 644 AALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLI 703
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK--CYCELGRVDELEEQLETLTKCN 314
L + K + ++ + +L N+ LV C G ++ + K
Sbjct: 704 GSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHK-- 761
Query: 315 QSPEVLLHFFSGIIRLYALSDRLD 338
LL F G+I SD LD
Sbjct: 762 --KSALLDVFKGLI-----SDGLD 778
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 4/190 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ +SG+V A+ V M + + PD+ ++N LI LC +++A + + ++
Sbjct: 496 LVVSGQVDE---ALMVREKMAERQVMPDANIYNVLISG-LCKKRMLSAAKNLLVEMLEQK 551
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+P+ Y I GF + K + G ++ Y ++I G K+ +
Sbjct: 552 VQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAV 611
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
M +G IP +++G + + FL ++ K N L+ Y
Sbjct: 612 MCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGY 671
Query: 295 CELGRVDELE 304
C +G D E
Sbjct: 672 CNIGNTDSAE 681
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P + Y+ I G+ G+V G V TY ++IH + D ++
Sbjct: 309 PGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESL 368
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM G+ P++ I V+ LC R + + L ++ + + L+ +C
Sbjct: 369 LWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCR 428
Query: 297 LGRVDE----LEEQLETLTKCNQ-SPEVLLHFF 324
G V+E L E + + NQ S L+H F
Sbjct: 429 EGDVEEALKLLREAIRRELEPNQLSYTPLIHGF 461
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 14/233 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLF 166
Y+ LI++ GK AM +F+ M G +PD++V+N+LI A L S D + AL+ F
Sbjct: 92 YSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALAYF 151
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E M S E +PN TY+ + F+ NV+ +N + + S ++ TY +G L
Sbjct: 152 EKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTY----NGVLD 207
Query: 227 ARDFDSVDRFYEEMMSLGII----PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
A + + R E ++S I P I +++ ++ ++++ K LL K
Sbjct: 208 AYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKP 267
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
++ Y + D+ E + + +P + F +I +Y + D
Sbjct: 268 TLPTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFIT--FESLIMMYGICD 318
>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 144/340 (42%), Gaps = 17/340 (5%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRL-DKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
FSW+A++ L + + A+ + + D ++K + S Y +I KV + A
Sbjct: 165 FSWNAILGVLVKVNQINVAKSFFDQIVNDAVVKPDAS---TYTTMIRGFCKVGMIDNARK 221
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M + P+ N+LI GD+ A M+ S++ P++ TY I G+
Sbjct: 222 VFDEMICE---PNLITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGY 278
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ KW + G + N+ TY ++I+G + D R +M G+ ++
Sbjct: 279 CKKGELNEARKWMDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENV 338
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L+GL K + + ++ G K++ + ++ YC++ + DE L+
Sbjct: 339 ATHLSILKGLSVAGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKE 398
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ S V F+ ++R+ LD + ++ G + VIC
Sbjct: 399 MQAKGISRSV--GSFNAVLRILVEIGELDKAVLLLKQVKNMG-CLPNLVSYSTVICGL-- 453
Query: 370 CAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
C ++ R+ L D ++ +++ Y LV G+ AG
Sbjct: 454 CRSHGRMQEVAGLVDDMLQDGFEMDATLYSCLVGGFCEAG 493
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 159/372 (42%), Gaps = 14/372 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
VS + + F+ +S+ +LI++ +S + + + ++++ G + L Y
Sbjct: 189 VSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE--DGCKPTLITY 246
Query: 112 ACLIALSGKVQNVPFA--MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++ + GK+ P+ + M++ GI PD+ +N+LI C A +FE M
Sbjct: 247 NVILNVFGKM-GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ + + TY+A + + K + GFS ++ TY SLI S ARD
Sbjct: 306 KAAG-FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI--SAYARD 362
Query: 230 --FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D +M G P + +L G K++ S + + G K N
Sbjct: 363 GMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+K Y G+ E+ + + + C SP+++ ++ ++ ++ + +V M
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVT--WNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+ G E +I +Y RC ++++ + ++ + +TY+ ++A R G+
Sbjct: 481 KRAGF-VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 407 SGKLDSVINEMK 418
+ + V+ EM+
Sbjct: 540 WEQSEKVLAEME 551
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L+ + K +P A F+ ++ +G PD NS++ V A + + M
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM-KER 658
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ P+ TY++ + S + + +A G ++ +Y ++I+ +
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R + EM + GI+P + + A + +++++ G + N+N +V
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 294 YCELGRVDELEEQLETL 310
YC+L R DE + +E L
Sbjct: 779 YCKLNRKDEAKLFVEDL 795
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M+ G P+ FN+LI A G A++++ M+ + P+ TY+ ++
Sbjct: 476 VFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAAL 534
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G + K A N TY SL+H ++ + EE+ S G+I
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS-GVIEPR 593
Query: 250 PILEKVLEGLCAR 262
+L K L +C++
Sbjct: 594 AVLLKTLVLVCSK 606
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA VL++ ++ G + Y L+ + + + + + + A+GIKPD +N
Sbjct: 647 KANGVLDYMKER---GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
++I A + + A +F M +S P+ TY+ FI +++ + I
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRNS-GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP------ILEKVLE 257
G N TY S++ G K D F E++ +L P P +LE++++
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLD--PHAPKGEDLRLLERIVK 816
>gi|308810923|ref|XP_003082770.1| leaf protein (ISS) [Ostreococcus tauri]
gi|116061239|emb|CAL56627.1| leaf protein (ISS) [Ostreococcus tauri]
Length = 807
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 7/212 (3%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
LE + D+ + ++ Y LI + N+ A + M+ + I P +FN LI
Sbjct: 270 LERQSDRGGRVSKPSAASYGLLIDAWARRGNMLAARKLLQQMQWERIAPSLQLFNILIGG 329
Query: 153 CLCSGDVVTALSLFEIMVSSEEY-------KPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
L G++ A LF + SS + +P++ TY F+ ++S G VDA + +
Sbjct: 330 YLKQGNIGAAEGLFRELESSGTWDMESLGIRPDNVTYTLFLDYWASQGQVDACERIFDRM 389
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ +VQ + +L+ +ARD D +R + + + + PS+ + V+ C ++
Sbjct: 390 ARKKVTADVQAFGTLVKAYARARDPDGAERVLDRLEAADVEPSVAVYSAVIAAFCTVGEM 449
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
R + L + + NE Y +L
Sbjct: 450 KRAREILDRMFDASLRPNERTFAHFAWGYGQL 481
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 14/285 (4%)
Query: 44 ISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKG 103
IS Q+ + I + L +++I SQ + L S+ ++ KK L ++KG
Sbjct: 80 ISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKG 139
Query: 104 NESCLD-EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT- 161
CL Y LI KV A+ + ++ + ++P+ ++N++I + +C +V
Sbjct: 140 --LCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDS-MCKVKLVNE 196
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN----VDAMNKWYAANIAAGFSVNVQTY 217
A L+ MVS E P+ TY A ISGF +G +D NK NI +V T+
Sbjct: 197 AFDLYSEMVS-EGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKP----DVYTF 251
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
L+ G K + MM GI P++ +++G C +++++ S +
Sbjct: 252 NILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQ 311
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
GG + ++ +C++ +VDE + + N P V+ +
Sbjct: 312 GGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTY 356
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M QGIKP+ + SL+ V A S+F M + P++++Y+ I+GF
Sbjct: 270 VFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTM-AQGGVNPDTQSYNIMINGF 328
Query: 190 SSLGNVD-AMN---KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ VD AMN K + NI NV TY SLI G K+ + +EM G+
Sbjct: 329 CKIKKVDEAMNLFKKMHCKNIIP----NVVTYTSLIDGLCKSGKISYALKLVDEMHDRGV 384
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFL 272
P I +L+ LC ++D+ + L
Sbjct: 385 PPDIITYSSILDALCKNHQVDKAIALL 411
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 111 YACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y+ LI+ + GK+++ A+ +F M + IKPD FN L+ G + ++F
Sbjct: 216 YSALISGFFIVGKLKD---AIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFA 272
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M+ + KPN TY + + G+ + V+ N + G + + Q+Y +I+G K
Sbjct: 273 MMMK-QGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKI 331
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ D +++M IIP++ +++GLC K+
Sbjct: 332 KKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKI 369
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y LI K + A+ M +G++ D +++LI D+ +A LF
Sbjct: 607 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELL 666
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+ +S PN Y++ ISGF L N++A WY I ++ TY +LI G LK
Sbjct: 667 EVGLS-----PNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 721
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
Y EM+S GI+P I ++ GLC + +L+ + L+
Sbjct: 722 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 768
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 37/326 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-------------------- 150
Y+ LI N+ A ++T M+ GI P NSL+
Sbjct: 363 YSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAV 422
Query: 151 -CAC------------LCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
C LC G + A SL + MV+ + PN +Y+ I G GN+D
Sbjct: 423 DCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVN-QGMVPNVVSYNDMILGHCRKGNMD 481
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ ++ +A NV TY LI G+ K D + +++M+SL I P+ ++
Sbjct: 482 MASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++ + LK L G+ + +V + + G +D + + S
Sbjct: 542 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 601
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P V+ ++ +I + S+R+D + M ++GL ++ R
Sbjct: 602 PNVVT--YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 659
Query: 377 DLFLDHIKGSYKLRRATYDFLVAGYR 402
DLF + ++ R Y+ +++G+R
Sbjct: 660 DLFFELLEVGLSPNRIVYNSMISGFR 685
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 126/308 (40%), Gaps = 42/308 (13%)
Query: 31 NTNSTSVSSSNPLISRLLQVPVSQIKTTL--DSVDIFAFNSSQFSWDALITSLQSSSPKK 88
N SV + N L+ L+ P+ + + L ++VD N F+++ +++ L
Sbjct: 389 NGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANI--FTYNIMMSWLCKGGKMD 446
Query: 89 AQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
L LD M+ +G + Y +I + N+ A VF+ M A+ +KP+ ++
Sbjct: 447 EACSL---LDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 503
Query: 148 SLICACLCSGDVVTALSLFEIMVS----------------------------------SE 173
LI GD AL LF+ M+S E
Sbjct: 504 ILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE 563
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ P+ TY++ + GF GN+D+ Y G S NV TY SLI+G K+ D
Sbjct: 564 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 623
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ +EM G+ + +++G C RR ++ + LL G N + ++
Sbjct: 624 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 683
Query: 294 YCELGRVD 301
+ +L ++
Sbjct: 684 FRDLNNME 691
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K N + + M+ +G P A F S+I AC+ G++V AL L E M+
Sbjct: 258 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 317
Query: 171 ----------------------------------SSEEYKPNSKTYDAFISGFSSLGNVD 196
+ + PN TY I G + GN++
Sbjct: 318 NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIE 377
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++ Y G +V SL+ G LKA ++ + ++E + G + +I ++
Sbjct: 378 KASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-VANIFTYNIMM 436
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LC K+D S L ++ G N ++ +C G +D
Sbjct: 437 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMD 481
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + ++ +LI S+ + L L+ R + KG E + Y+ LI K +++
Sbjct: 598 FGVSPNVVTYTSLINGFCKSN--RIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDM 655
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F + G+ P+ V+NS+I ++ AL ++ M++ + + TY
Sbjct: 656 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIN-DRIPCDLGTYTT 714
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G G + + Y ++ G ++ T+ L++G ++ + EEM
Sbjct: 715 LIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKN 774
Query: 245 IIPSIPILEKVLEG 258
+ PS+ I ++ G
Sbjct: 775 MTPSVLIYNTLIAG 788
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
+ ++ ++++I+ + + +A LV W KM+ C L Y LI K +
Sbjct: 669 GLSPNRIVYNSMISGFRDLNNMEAALV--W-YKKMINDRIPCDLGTYTTLIDGLLKEGRL 725
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
FA ++ M ++GI PD F+ L+ G + A + E M + P+ Y+
Sbjct: 726 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM-DRKNMTPSVLIYNT 784
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
I+G+ GN+ + + G + TY+ LI+G K
Sbjct: 785 LIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKG 827
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 131/322 (40%), Gaps = 24/322 (7%)
Query: 53 SQIKTTLDSVDIFAF---NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
+IK D D A N FS++ ++ + K LV L ++ G+ D
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT----KGCLVDMTDLFDLMLGDGIAPD 393
Query: 110 EYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI + AM +F M G+KPD + ++I A G + A+ F
Sbjct: 394 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+ Y+ I GF + G++ + + + G +++ + S+I+ K
Sbjct: 454 QMID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
++ +++G+ P + +++G C K+++ ++ G + N +
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 572
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV YC++GR+DE + + P +L +S II D + GR
Sbjct: 573 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL--YSIII----------DGLFQAGRT 620
Query: 348 GKQGLSFKSAED--VEMVICSY 367
+ F + + M IC+Y
Sbjct: 621 VPAKVKFHEMTESGIAMDICTY 642
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 127/308 (41%), Gaps = 21/308 (6%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++ A VF +M +G PD +N ++ G +V LF++M+ + P+
Sbjct: 338 GKIKE---ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPD 393
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I +++ G +D + G +V TY ++I + D +
Sbjct: 394 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ G+ P +++G C L + K + ++ G ++ ++ C+LG
Sbjct: 454 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 513
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
RV + + + P+ ++ +S ++ Y L +++ M G+ E
Sbjct: 514 RVMDAQNIFDLTVNVGLHPDAVV--YSMLMDGYCLVGKMEKALRVFDAMVSAGI-----E 566
Query: 359 DVEMVICS----YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
+V C+ Y + D L LF + ++ K Y ++ G +AG +V
Sbjct: 567 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAG-----RTV 621
Query: 414 INEMKFAE 421
++KF E
Sbjct: 622 PAKVKFHE 629
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D Y CL+ GK++ A+ VF +M + GI+P+ V+ +L+ G + LSLF
Sbjct: 541 MDGY-CLV---GKMEK---ALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFR 593
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ KP++ Y I G G + +G ++++ TY ++ G K
Sbjct: 594 EMLQ-RGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKN 652
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
R FD ++E+ ++ + +I L +++G+ R+++ K
Sbjct: 653 RCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLF 697
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 20/325 (6%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQ-------FSWDALITSL--QSSSPKKAQL 91
N +I+ L + K T +++DI + + FS+ L+ SL Q S + L
Sbjct: 145 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204
Query: 92 VLEWRLDKMLKGNESC---LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
L M +G C + Y +I K +V A +F M +GI PD +NS
Sbjct: 205 -----LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 259
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
++ A LC + F + ++ PN+ TY+ I G+SS G + +
Sbjct: 260 VVHA-LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+V T L+ K ++ M G P + +L G + L +
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+LG G + L+K Y G +D+ + P+V+ + +I
Sbjct: 379 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YRTVI 436
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLS 353
++DD +M QG++
Sbjct: 437 AALCRIGKMDDAMEKFNQMIDQGVA 461
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 107/270 (39%), Gaps = 5/270 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVD 196
G PD ++ L+ + G A L +M PN Y+ I GF G+V+
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 236
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G ++ TY S++H KAR D + F +M++ ++P+ ++
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 296
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G + + K + + L+ C+ G++ E + +T+ Q+
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P+V ++ ++ YA L D+ M G++ ++I +Y C D+
Sbjct: 357 PDVF--SYNIMLNGYATKGCLVDMTDLFDLMLGDGIA-PDFYTFNVLIKAYANCGMLDKA 413
Query: 377 DLFLDHIKG-SYKLRRATYDFLVAGYRRAG 405
+ + ++ K TY ++A R G
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIG 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S NV Y ++I G K D + ++EM+ GI P + V+ LC R +D+ ++
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIR 329
FL+ ++ N L+ Y G+ E + + + + P+V+ L G +
Sbjct: 276 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDHIKGSYK 388
Y DV ++ G+ F +++ Y + D DLF +
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFS----YNIMLNGYATKGCLVDMTDLFDLMLGDGIA 391
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
T++ L+ Y G+ K + NEM+
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I P+ ++SLI + A + E+M+ ++ PN TY+ I
Sbjct: 342 AEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVVTYNTLI 400
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF VD + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 460
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+I +L+GLC KL + ++L
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+++FT ME +G++P+ ++SLI +CLC+ G A L M+ + PN T+ A
Sbjct: 272 ALNLFTEMENKGVRPNVITYSSLI-SCLCNYGRWSDASRLLSDMIE-RKINPNLVTFSAL 329
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F G + K Y I N+ TY SLI+G + E M+
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P++ ++ G C +++D+ + + G N L+ + + D +
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 306 QLETLTKCNQSPEVLLH 322
+ + P +L +
Sbjct: 450 VFKQMVSVGVHPNILTY 466
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ + +++++I +
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + G ++ + I + N+
Sbjct: 266 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ YEEM+ I P+I ++ G C +L K L+ +
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ RVD+ E +++
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M G +PD NSL+ C G+ ++ A++L + MV YKP++ T+ I G
Sbjct: 139 MMKLGYEPDIVTLNSLLNG-FCHGNRISDAVALVDQMVEMG-YKPDTVTFTTLIHGLFLH 196
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ G ++ TY ++++G K D D +M + I ++ I
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V++ LC R D + + G + N L+ C C GR + L + +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+P ++ FS +I + +L E
Sbjct: 317 RKINPNLVT--FSALIDAFVKKGKLVKAE 343
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +N+LI + V + LF M S N+ TY I GF + D
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ ++ G N+ TY L+ G K +E + + P I ++EG+C
Sbjct: 450 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 509
Query: 261 ARRK 264
K
Sbjct: 510 KAGK 513
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 19/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD + ++ +I + V A LFE M P+ TY I
Sbjct: 437 AFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEM-KKNGIVPSVYTYTILI 495
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + W+ + + NV TY SLIH LKAR ++ +E M+ G
Sbjct: 496 DSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSK 555
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--------GWKINENMAQK--------L 290
P++ +++G C ++D+ + G +K+++N + L
Sbjct: 556 PNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGAL 615
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ RV+E E L+T++ P ++ + +I + + +L++ + +M ++
Sbjct: 616 VDGLCKANRVEEAHELLDTMSVNGCEPNQIV--YDALIDGFCKTGKLENAQEVFVKMSER 673
Query: 351 G 351
G
Sbjct: 674 G 674
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ + +L+ + V A L + M S +PN YDA I GF G ++ +
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTM-SVNGCEPNQIVYDALIDGFCKTGKLENAQE 665
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G+ N+ TY SLI+ K + D V + +M+ P++ I +++GLC
Sbjct: 666 VFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLC 725
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
K + + + G N ++ + ++G++++ E
Sbjct: 726 KVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLE 770
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A + +M G +P+ V+++LI +G + A +F + +
Sbjct: 612 YGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVF-VKM 670
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S Y PN TY + I+ +D + K + + + NV Y +I G K
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT 730
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R +M +G P++ +++G K+++ + + G N + L
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ C G +DE L+ + +
Sbjct: 791 INHCCSTGLLDEAHRLLDEMKQ 812
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 9/211 (4%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + LD++ + +Q +DALI ++ + AQ V ++ N L
Sbjct: 625 VEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPN---LYT 681
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + + + V + M P+ ++ +I G A + +M+
Sbjct: 682 YSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEA---YRLML 738
Query: 171 SSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
EE PN TY A I GF +G ++ + Y + G + N TY LI+
Sbjct: 739 KMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTG 798
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D R +EM I K++EG
Sbjct: 799 LLDEAHRLLDEMKQTYWPRHISSYRKIIEGF 829
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E + PD+ +N ++ LC + A+ + + M S PN TY +SG
Sbjct: 263 LEKEEFVPDTVFYNRMVSG-LCEASLFQEAMDILDRM-RSISCIPNVVTYRILLSGCLGK 320
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G + + + + G N + + SL+H K+RD+ + +++M+ G P +
Sbjct: 321 GQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLY 380
Query: 253 EKVLEGLCARRK------LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ +C+ + L+ + +L G +N+ +C C G+ D+
Sbjct: 381 NIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDK 436
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 76/219 (34%), Gaps = 40/219 (18%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + + A V M G + D + +G ALSL E
Sbjct: 208 YNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLE--- 264
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
EE+ P++ Y+ +SG L SL
Sbjct: 265 -KEEFVPDTVFYNRMVSG-------------------------------LCEASLFQEAM 292
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +DR M S+ IP++ +L G + +L R K L ++ G N M L
Sbjct: 293 DILDR----MRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSL 348
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH-FFSGII 328
V YC+ + + + KC P LL+ F G I
Sbjct: 349 VHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSI 387
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/200 (18%), Positives = 80/200 (40%), Gaps = 9/200 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M + P+ + L+ CL G + + +M++ Y PN + +++ +
Sbjct: 291 AMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCY-PNREMFNSLV 349
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-------FDSVDRFYEE 239
+ + K + I G Y I GS+ + + + ++ Y E
Sbjct: 350 HAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFI-GSICSNEELPGSDLLELAEKAYSE 408
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ LG++ + + LC K D+ + ++ G+ +++ K++ C+ +
Sbjct: 409 MLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASK 468
Query: 300 VDELEEQLETLTKCNQSPEV 319
V++ E + K P V
Sbjct: 469 VEKAFLLFEEMKKNGIVPSV 488
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 8/232 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQN 123
F + S++ LI +L K Q + W L D KG S + +A + + +
Sbjct: 151 GFKHTTESYNLLIEALG----KIKQFNVIWNLVSDMKRKGILS-RETFALITRRYARARK 205
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ F ME G + + FN L+ S +V A +F+ M +KP+ K+Y
Sbjct: 206 VKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGR-FKPDIKSYT 264
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G+ N+ +N+ Y GF +V T+ LI+ KAR +D R + EM +
Sbjct: 265 ILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK 324
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
I PS + ++ GL + ++L F + L G+ +V YC
Sbjct: 325 NIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYC 376
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 100/261 (38%), Gaps = 51/261 (19%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + + LI K + A+ +F MEA+ IKP VF +LI +
Sbjct: 289 EGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKE 348
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFS-------SLGNVDAMNKWYAANIAAGFSVNV 214
AL FE + S + P + TY+A + + + VD M K +G N
Sbjct: 349 ALEFFEQLKLSG-FAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRK-------SGVGPNS 400
Query: 215 QTYESLIHGSLKARD------------------------------------FDSVDRFYE 238
+TY+ ++H +K R D + ++
Sbjct: 401 RTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWD 460
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM + G++P + + ++ LC KL+ ++ + +L G + M L + + G
Sbjct: 461 EMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDG 520
Query: 299 RVDELEEQLETLTKCNQSPEV 319
R D E + K ++P V
Sbjct: 521 RKDTALLMAEKIXKLRKAPLV 541
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + N+ A +F M +G+ PD F+SLI +G + AL F M
Sbjct: 365 YNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREME 424
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P++ Y I GF G + K +A G ++V TY + ++G K + F
Sbjct: 425 RSG-IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMF 483
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + EM+ G++P ++ G C +D+ + + ++ K ++ L
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543
Query: 291 VKCYC---ELGRVDELEEQL 307
+ +C E+GR EL + +
Sbjct: 544 IDGFCKAGEMGRAKELWDDM 563
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+ML KG L LI + ++P A + M + GI PDS +N+LI L
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
++ A L M + N TY+ ++GF + G + + I G + + T
Sbjct: 656 ANLEKAFILINEM-EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGAT 714
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
Y SLI+G + + RF++EM+ G++P
Sbjct: 715 YSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 16/303 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +NV M + ME +G+ D +N+LI A G V A L SS +P
Sbjct: 272 KFENV---MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN-SFSSRGMEPGL 327
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G +G D + G + N TY +L+ + + ++E
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G++P + ++ L L + + + G + + L+ +C G
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447
Query: 300 V-DELEEQLETLTK-CNQSPEVLLHFFSGII--RLYALSDRLDDVEYSVGRMGKQGLSFK 355
+ D L+ + E L + C F +G+ +++A +D L M ++G+
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML------FNEMVERGM-VP 500
Query: 356 SAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+I Y + D+ L+LF ++ + K + TY+ L+ G+ +AG G+ +
Sbjct: 501 DFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELW 560
Query: 415 NEM 417
++M
Sbjct: 561 DDM 563
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+++ M +GI+P+ N+LI SGD+ A M+S+ P+S +Y+
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG-IIPDSFSYN 646
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ N++ G N+ TY +++G ++ +M+ +
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
GI P ++ G ++ D +K +F
Sbjct: 707 GINPDGATYSSLINGHVSQ---DNMKEAFRF 734
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 30/278 (10%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY----KPNSKTYDAFISGF 189
M +G+ PD FNS I A G V+ A +F M +EY +PNS TY+ + GF
Sbjct: 243 MREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDM-ELDEYLGLPRPNSITYNLMLKGF 301
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G ++ + + V++Q+Y + G ++ F + ++M+ GI PSI
Sbjct: 302 CKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSI 361
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++GLC L K+ + + G + L+ YC +G+VD + L+
Sbjct: 362 YSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQE 421
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+ + N P ++ I L++L + R+ + E + +M ++G ++ V C
Sbjct: 422 MMRNNCLPNA----YTCNILLHSLWNMGRISEAEELLRKMNEKGYG------LDTVTC-- 469
Query: 368 FRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ +D + GS +L +A +V G R G
Sbjct: 470 ---------NIIVDGLCGSGELDKAIE--IVKGMRVHG 496
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD +++L+ +G A +LF M+ E+ +P+S Y+ FI F G + + +
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMG-EKLQPDSLAYNIFIHHFCKQGKISSAFR 580
Query: 201 WYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G +++TY SLI G +K + F+ + +EM GI P+I ++ L
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFE-IHGLMDEMREKGISPNICTYNTAIQYL 639
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET-LTKCNQ 315
C K++ + L ++ N + L+ +C++ D +E ET ++ C Q
Sbjct: 640 CEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQ 696
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y L+ ++ R + V Y++M+ GI P ++ LC +D + +
Sbjct: 115 YNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMP 174
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G K NE LV+ YC+ G D+ E L ++ P ++ ++ I+ + R
Sbjct: 175 EKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVV--YNTIVSSFCREGR 232
Query: 337 LDDVEYSVGRMGKQGL-----SFKSAEDVEMVICSYFRCAAYDRL--DLFLDHIKGSYKL 389
DD E V +M ++GL +F S +C + R+ D+ LD G +
Sbjct: 233 NDDSEKLVEKMREEGLVPDIVTFNSRIS---ALCKEGKVLDASRIFSDMELDEYLGLPRP 289
Query: 390 RRATYDFLVAGYRRAGL 406
TY+ ++ G+ + GL
Sbjct: 290 NSITYNLMLKGFCKVGL 306
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 130/322 (40%), Gaps = 24/322 (7%)
Query: 53 SQIKTTLDSVDIFAF---NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
+IK D D A N FS++ ++ + K LV L ++ G+ D
Sbjct: 341 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT----KGCLVDMTDLFDLMLGDGIAPD 396
Query: 110 EYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI + AM +F M G+KPD + ++I A G + A+ F
Sbjct: 397 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 456
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + P+ Y+ I GF + G++ + + + G +++ + S+I+ K
Sbjct: 457 QMID-QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 515
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
++ +++G+ P + +++G C K+++ ++ G + N
Sbjct: 516 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 575
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV YC++GR+DE + + P +L +S II D + GR
Sbjct: 576 GTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL--YSIII----------DGLFEAGRT 623
Query: 348 GKQGLSFKSAED--VEMVICSY 367
+ F + + M IC+Y
Sbjct: 624 VPAKMKFHEMTESGIAMDICTY 645
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/304 (19%), Positives = 124/304 (40%), Gaps = 13/304 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK++ A VF +M +G PD +N ++ G +V LF++M+ + P+
Sbjct: 341 GKIKE---ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPD 396
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I +++ G +D + G +V TY ++I + D +
Sbjct: 397 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 456
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ G+ P +++G C L + K + ++ G ++ ++ C+LG
Sbjct: 457 QMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLG 516
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
RV + + + P+ ++ ++ ++ Y L +++ M G+ +
Sbjct: 517 RVMDAQNIFDLTVNVGLHPDAVV--YNMLMDGYCLVGKMEKALRVFDAMVSAGIE-PNVV 573
Query: 359 DVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ Y + D L LF + ++ K Y ++ G AG +V +M
Sbjct: 574 GYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAG-----RTVPAKM 628
Query: 418 KFAE 421
KF E
Sbjct: 629 KFHE 632
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ V A ++F G+ PD+ V+N L+ G + AL +F+ MVS+ +PN
Sbjct: 514 KLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG-IEPNV 572
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y ++G+ +G +D + + G + Y +I G +A + E
Sbjct: 573 VGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHE 632
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M GI I VL GL R D K L KIN ++ + R
Sbjct: 633 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 692
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V+E ++ ++++ P V+ +
Sbjct: 693 VEEAKDLFASISRSRLVPSVVTY 715
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 123/325 (37%), Gaps = 20/325 (6%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQ-------FSWDALITSL--QSSSPKKAQL 91
N +I+ L + K T +++DI + + FS+ L+ SL Q S + L
Sbjct: 148 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 207
Query: 92 VLEWRLDKMLKGNESC---LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
L M +G C + Y +I K +V A +F M +GI PD +NS
Sbjct: 208 -----LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 262
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
++ A LC + F + ++ PN+ TY+ I G+SS G + +
Sbjct: 263 VVHA-LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 321
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+V T L+ K ++ M G P + +L G + L +
Sbjct: 322 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 381
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+LG G + L+K Y G +D+ + P+V+ + +I
Sbjct: 382 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YRTVI 439
Query: 329 RLYALSDRLDDVEYSVGRMGKQGLS 353
++DD +M QG++
Sbjct: 440 AALCRIGKMDDAMEKFNQMIDQGVA 464
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 107/270 (39%), Gaps = 5/270 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVD 196
G PD ++ L+ + G A L +M PN Y+ I GF G+V+
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 239
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G ++ TY S++H KAR D + F +M++ ++P+ ++
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 299
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G + + K + + L+ C+ G++ E + +T+ Q+
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 359
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P+V ++ ++ YA L D+ M G++ ++I +Y C D+
Sbjct: 360 PDVF--SYNIMLNGYATKGCLVDMTDLFDLMLGDGIA-PDFYTFNVLIKAYANCGMLDKA 416
Query: 377 DLFLDHIKG-SYKLRRATYDFLVAGYRRAG 405
+ + ++ K TY ++A R G
Sbjct: 417 MIIFNEMRDHGVKPDVVTYRTVIAALCRIG 446
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
S NV Y ++I G K D + ++EM+ GI P + V+ LC R +D+ ++
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIR 329
FL+ ++ N L+ Y G+ E + + + + P+V+ L G +
Sbjct: 279 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 338
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDHIKGSYK 388
Y DV ++ G+ F +++ Y + D DLF +
Sbjct: 339 KYGKIKEARDVFDTMAMKGQNPDVFS----YNIMLNGYATKGCLVDMTDLFDLMLGDGIA 394
Query: 389 LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
T++ L+ Y G+ K + NEM+
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 19/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M G PD++ ++ +I + V A LF+ M + P+ TY I
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTG-VVPDVYTYTILI 531
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
FS G + + W + G V TY +LIH LKA+ + +E M++ G
Sbjct: 532 DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCF 591
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQK--------L 290
P++ +++G C +++ + G +KI N+A+K L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ +V + + LET+ P ++ + +I + + +LD+ + +M ++
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIV--YDALIDGFCKAAKLDEAQEVFHKMVER 709
Query: 351 G 351
G
Sbjct: 710 G 710
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 130/329 (39%), Gaps = 27/329 (8%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W LD+M++ G E + Y LI K + V A +F M A+G P+ + +LI
Sbjct: 546 W-LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604
Query: 154 LCSGDVVTALSLFEIMVSSEEY---------------KPNSKTYDAFISGFSSLGNVDAM 198
SG++ A ++ M + KPN TY A + G V
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDA 664
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
G N Y++LI G KA D + +M+ G P++ +++
Sbjct: 665 RDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDR 724
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L ++LD V L +L N + +++ ++ + DE + + + + P
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD- 377
V+ ++ +I + + ++D MG +G A + C A LD
Sbjct: 785 VVT--YTAMIDGFGKAGKVDKCLELFREMGSKG----CAPNFVTYTVLINHCCATGHLDE 838
Query: 378 --LFLDHIKGSYKLRR-ATYDFLVAGYRR 403
L+ +K +Y + ++Y ++ GY+R
Sbjct: 839 AYALLEEMKQTYWPKHVSSYCKVIEGYKR 867
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 34/197 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y +I GK V + +F M ++G P+ + LI C +G +
Sbjct: 779 KGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDE 838
Query: 162 ALSLFEIM--------VSS-----EEYK-------------------PNSKTYDAFISGF 189
A +L E M VSS E YK P Y I F
Sbjct: 839 AYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNF 898
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQT--YESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G ++ + + I+A S+ + Y SLI+ A D + +M+ G+IP
Sbjct: 899 VKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIP 958
Query: 248 SIPILEKVLEGLCARRK 264
+ +L GL R+
Sbjct: 959 DLGTFVHLLMGLIRVRR 975
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 97/245 (39%), Gaps = 14/245 (5%)
Query: 65 FAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
F + ++ +++AL+ L++ AQLV + L +E L +A + GK +
Sbjct: 235 FGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWR- 293
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ +E + P++ ++N +I LC F + S PN +TY
Sbjct: 294 -----EALSLIEKEDFVPNTILYNKMISG-LCEASFFEEAMDFLNRMRSTSCIPNVQTYR 347
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G + + + + IA G + + SL+H K+ DF + ++M
Sbjct: 348 ILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC 407
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSF------LKFLLGGGWKINENMAQKLVKCYCEL 297
P + ++ +C+ +L +F +L G +N+ +C C
Sbjct: 408 ECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGF 467
Query: 298 GRVDE 302
G+ ++
Sbjct: 468 GKFEK 472
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF--SSLGNV 195
G KP +N+L+ L + + TA + E + D F GF +L V
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTA------QLVHREMSELGLSMDEFTLGFFAQALCKV 289
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ + F N Y +I G +A F+ F M S IP++ +
Sbjct: 290 GKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRIL 349
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L G +++L R K L ++ G + + LV YC+ + L+ + KC
Sbjct: 350 LCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCEC 409
Query: 316 SPEVLLH 322
P +++
Sbjct: 410 KPGYVVY 416
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 139/310 (44%), Gaps = 5/310 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ L GK + A +F M ++G+KP V+ +L+ A SG + A+S + M
Sbjct: 130 YTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMK 189
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + KP+ TY I + L D + K A G + N TY ++I+G KA+ F
Sbjct: 190 SISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMF 249
Query: 231 DSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ ++ EM+ S P + + ++++++ + K G + +
Sbjct: 250 EQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNS 309
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ Y + G D+++ L + K SP ++ + II + + ++++E M
Sbjct: 310 MISSYGKAGMYDKMKSVLNFMEKRFFSPTIVT--MNTIIDSFGRAGNIEEMEEYFKNMKF 367
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRAT-YDFLVAGYRRAGLSG 408
QG+ S +V +Y + +++D L I+ S + ++ L+ Y +AG
Sbjct: 368 QGMKPNSVTYCSLV-NAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVR 426
Query: 409 KLDSVINEMK 418
K+ + EMK
Sbjct: 427 KMGELFLEMK 436
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 48/261 (18%), Positives = 103/261 (39%), Gaps = 4/261 (1%)
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
TAL +F ++ + Y+P +TY + + + + + G ++ Y +L
Sbjct: 109 TALKIFGLLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTAL 168
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKLDRVKSFLKFLLGGG 279
+ ++ +EM S+ +L C R R+ D +K L + G
Sbjct: 169 VSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLG 228
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
N ++ + + +++E L + + + P L+ F+ IR Y S++++
Sbjct: 229 ITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLIT-FNTFIRAYGNSEQIEK 287
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLV 398
+E G+ +I SY + YD++ L+ + K + T + ++
Sbjct: 288 MEKWYKEFQLMGIE-PDIWTYNSMISSYGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTII 346
Query: 399 AGYRRAGLSGKLDSVINEMKF 419
+ RAG +++ MKF
Sbjct: 347 DSFGRAGNIEEMEEYFKNMKF 367
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 116/295 (39%), Gaps = 37/295 (12%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM +F M +G KP ++ FN+LI G + L EIM E KP+ +TY
Sbjct: 153 NVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTY 212
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + + + N++ + AG +V TY ++ + ++ +M +
Sbjct: 213 NILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQN 272
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ V++G + F+ + G G N + L+K + ++
Sbjct: 273 NKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKG 332
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
++E L + + P+V+ +S I+ ++ S G M K
Sbjct: 333 VDETLTLMQEFGVKPDVVT--YSTIMNAWS----------SAGLMEK------------- 367
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
C ++F D IK + + L GY RAG K ++++ M
Sbjct: 368 --CE----------EMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAM 410
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 9/240 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ N+ A V M G+KPD +N++ A + A L M
Sbjct: 212 YNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQM- 270
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSV--NVQTYESLIHGSLKA 227
+ + PN +T + G+S GN+ DA+ Y GF V N+ + SL+ G L
Sbjct: 271 QNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQ---GFGVHPNLFIFNSLLKGFLDI 327
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D VD M G+ P + ++ + +++ + + ++ G + + +
Sbjct: 328 TDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAF 387
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L K Y G + E LE + P V++ F+ II + + +++D RM
Sbjct: 388 SILAKGYVRAGEPKKAEALLEAMATHGAHPNVVM--FTTIISGWCSAAKMEDALRVYDRM 445
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M GI+PD+ F+ L + +G+ A +L E M + + PN + ISG+
Sbjct: 371 MFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMATHGAH-PNVVMFTTIISGW 429
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
S ++ + Y N+ T+E+LI G +A + + + M +G++P
Sbjct: 430 CSAAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMGVLP 487
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 13/299 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + ME GI+ D +N +I LC L + P+ +Y+ I
Sbjct: 283 ALRILDDMEKNGIEADLYTYNIMIDK-LCKLKRSARAYLLLKRMREVNLTPDECSYNTLI 341
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ + + +V TY +LI G + D R EM G+
Sbjct: 342 HGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVR 401
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L G C KL +K+L IN M L+ +C+LG V + ++
Sbjct: 402 PSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQI 461
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L+ + P+V+ +S +I + + + + RM K G+ + +V
Sbjct: 462 LKCMLADGIDPDVIT--YSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVF-- 517
Query: 367 YFRCAAYDR--LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
YF A + + L F+D + ++ L+ + R G+ + + +F +YM
Sbjct: 518 YFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAE------QFKQYM 570
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 1/208 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K+ + + + M+ G+ P++ ++ +L+ +G AL F + +
Sbjct: 477 YSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYF-VDI 535
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
NS ++A + F G + ++ S +V ++ +I + +
Sbjct: 536 YRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNV 595
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+ M+ G P I +L GLC L + K F+ +LL I+E L
Sbjct: 596 LEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTL 655
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPE 318
+ C+ G +DE + E + N P+
Sbjct: 656 LVGICKHGTLDEALDLCEKMVTRNILPD 683
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 114/274 (41%), Gaps = 4/274 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M I D A FN +I + G+V+ A S+++ MV + P+ TY + + G G
Sbjct: 570 MSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVR-HGWPPDICTYGSLLRGLCQGG 628
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ ++ + +++ +T +L+ G K D E+M++ I+P
Sbjct: 629 HLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYT 688
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+L+G C R K+ L+ +L G + L+ G+V + + C
Sbjct: 689 ILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII-C 747
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373
+ ++ ++ Y +++++E + M + + + S+ +++ Y +
Sbjct: 748 KEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEV-YPSSASYNILMHGYIKKGQL 806
Query: 374 DR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
R L L+ D +K K TY L+ G GL
Sbjct: 807 SRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGL 840
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 23/192 (11%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
++++ M +GIKPD+ + LI G + A+ E MV E P++ +D I
Sbjct: 809 TLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVL-EGVFPDNLAFDILI 867
Query: 187 SGFSS----------------LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
FS +G++D + A G + S++ G K
Sbjct: 868 KAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKV 927
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +M G++P+I ++ GLC K+D + + G K++ L
Sbjct: 928 EEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVL 987
Query: 291 V------KCYCE 296
+ KC C+
Sbjct: 988 ITGLCNKKCICD 999
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 22/228 (9%)
Query: 111 YACLIALSGKVQ--NVPFAMHVFTSMEA-QGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y CL L+G V V A ++F + +G+ D +NS++ L G + L
Sbjct: 722 YTCL--LNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMR 779
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M +E Y P+S +Y+ + G+ G + Y + G + TY LI G +
Sbjct: 780 NMHENEVY-PSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEY 838
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD---RVKSFLKFL--LGGGWKI 282
+ +F E+M+ G+ P + +++ + K+ ++ S++K++ + G +++
Sbjct: 839 GLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFEL 898
Query: 283 NENMA-----------QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
E+M +V+ C+ G+V+E ++ + P +
Sbjct: 899 KEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTI 946
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV----------SSE 173
+ A+ M +G+ PD+ F+ LI A + AL LF M E
Sbjct: 841 IEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKE 900
Query: 174 EYK-----PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
+ K P+ + + G G V+ +++ + AG + T+ +L+HG K
Sbjct: 901 DMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEF 960
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
D + M S G+ + ++ GLC ++
Sbjct: 961 KIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKK 995
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKP 177
V ++ A + M+A G+ P +S++ C C G V A+ +F ++ + P
Sbjct: 889 VGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKC---GKVEEAIIVFSSIMRAGMV-P 944
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-DSVDRF 236
T+ + G +D + G V+V TY LI G + D++D
Sbjct: 945 TIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALD-L 1003
Query: 237 YEEMMSLGIIPSI 249
YEEM S G++P+I
Sbjct: 1004 YEEMKSKGLLPNI 1016
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 23/317 (7%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALS 164
A L L G + V A F S + + PD FN++I LC +GDV +
Sbjct: 161 ALLAGLVG-AKRVDLAEKAFRSALRRRVSPDIYTFNTVISG-LCRIGQLRKAGDVAKDIK 218
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ + P+ TY++ I G+ GN+ ++ + AG S T+ LI
Sbjct: 219 AWGL-------APSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G K + + R +EEM GI S+ ++ GLC+ K++ ++ + G
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
NE ++K +C+ G + + + ++ +T+ N P+V+++ +I +Y +++D
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNI--LIDVYRRLGKMEDAM 389
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAG 400
M K+G+S + +I + R + LD +K + TY+ L+
Sbjct: 390 AVKEAMAKKGIS-PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448
Query: 401 YRRAGLSGKLDSVINEM 417
G K +++EM
Sbjct: 449 LCCKGEVRKAVKLLDEM 465
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 97/270 (35%), Gaps = 41/270 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K N A+ VF M+ QGI +NSLI G V + L E M
Sbjct: 267 FGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM- 325
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------------------------- 202
PN T+ + GF G + N W
Sbjct: 326 EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKM 385
Query: 203 -------AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A G S NV TY LI G ++ D+ S +EM GI + +
Sbjct: 386 EDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVL 445
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC + ++ + L + G + N +++ +C+ G + E + KC +
Sbjct: 446 IGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRK 505
Query: 316 SPEVL-----LHFFSGIIRLYALSDRLDDV 340
V+ + +F I ++ +D L+++
Sbjct: 506 RANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y CLI + + A + M+ +GI+ D +N LI A C G+V
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK 457
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + M S +PN TY+ I GF GN+ + + NV TY I
Sbjct: 458 AVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ D + EM+ ++P+ E + EG+
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 17/301 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V ME ++ D +N +I LC T L + ++ P+ TY+ I
Sbjct: 279 ALCVLEDMERDSVQADVYTYNIMIDK-LCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLI 337
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G ++ + + +V TY ++I G + R D EM G++
Sbjct: 338 NGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVM 397
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L G C L ++ L G IN+ M L+ +C++G + + ++
Sbjct: 398 PSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQI 457
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV--EMVI 364
L+++ + P+V+ +S +I ++ + + + RM K G+ DV +I
Sbjct: 458 LKSMFEDGIDPDVIT--YSALINGMCRMAKMHETKEILSRMQKSGI---LPNDVLYTTLI 512
Query: 365 CSYFRCAAY--DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
C Y + A Y + L F+D + ++ L+ + R G+ + F +Y
Sbjct: 513 CYYCK-AGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGM------ITEAEHFRQY 565
Query: 423 M 423
M
Sbjct: 566 M 566
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 7/231 (3%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A+ M +GI PD VF+ LI A + AL +F M P+SKT+
Sbjct: 837 IDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCM-KWLHMSPSSKTFS 895
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I+G G +D +K + G N Y +L++ + + D R EEM ++
Sbjct: 896 AMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAI 955
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI+P+ ++ GLC KL+ ++ G L+ C+ ++ +
Sbjct: 956 GIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADA 1015
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ C +V+ + +G+ + +SD LD G M +GL
Sbjct: 1016 LHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALD----LYGEMKSKGL 1062
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI ++ + + + M+ GI P+ ++ +LIC +G V AL F + +
Sbjct: 473 YSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHF-VDI 531
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
N ++A + F G + + S + ++ +I +
Sbjct: 532 YRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNI 591
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y++M+ G P++ + +L GLC L + + F+ LL + I+E L
Sbjct: 592 VGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNAL 651
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ C G +DE + E + K N P++
Sbjct: 652 LLGICRYGTLDEALDLCEKMIKNNCLPDI 680
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A H M I DS FN +I + G++V A S+++ MV Y PN TY +
Sbjct: 559 AEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYG-YSPNVCTYQNLL 617
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ ++ + + F+++ +T+ +L+ G + D E+M+ +
Sbjct: 618 RGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCL 677
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P I +L G C + K+ L+ +L G
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLEKG 710
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 87/241 (36%), Gaps = 44/241 (18%)
Query: 111 YACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y CL+ G+V+ + H E G+ D +NSL+ L S +V T +
Sbjct: 718 YTCLLNGLINEGQVKAASYVFHEIICKE--GLYADCIAYNSLMNGYLKSRNVNTIKRMMS 775
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M +E Y PNS +Y+ + G+ G Y + G + TY LI G +
Sbjct: 776 DMYQNEVY-PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSEC 834
Query: 228 RDFDSVDRFYEEMMSLGII-----------------------------------PSIPIL 252
D +F E+M+ GI PS
Sbjct: 835 GLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTF 894
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLET 309
++ GL + LD L +L G + N LV C +G +D L+E+++
Sbjct: 895 SAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKA 954
Query: 310 L 310
+
Sbjct: 955 I 955
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD + L+ G ++ AL + ++M+ + P++ Y ++G + G V A +
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLE-KGVVPDTVAYTCLLNGLINEGQVKAASY 736
Query: 201 WYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ I G + Y SL++G LK+R+ +++ R +M + P+ ++ G
Sbjct: 737 VFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGY 796
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
R + + K+++ G + + + L+ E G +D + LE +
Sbjct: 797 VKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKM 847
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 5/231 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S++ +I L + S K+A +LE K +E Y L+ K N A+ +
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT---YNTLLNGYCKEGNFHQALVIH 342
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M G+ P + +LI + + ++ A+ F+ M +PN +TY I GFS
Sbjct: 343 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSR 401
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G ++ + +GFS +V TY + IHG + +EM+ G+ P +
Sbjct: 402 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 461
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G C + +LDR + ++ G + L++ CE+ R+ E
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTE 512
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 3/244 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
L+ + F + +++ L+ LV+ + + G + Y LI
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR--NGVSPSVVTYTALINSM 364
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K +N+ AM F M +G++P+ + +LI G + A + M S + P+
Sbjct: 365 CKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG-FSPS 423
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+AFI G L ++ + G + +V +Y ++I G + + D + +
Sbjct: 424 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 483
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G+ P +++GLC R+L + +L G +E L+ YC G
Sbjct: 484 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 543
Query: 299 RVDE 302
+++
Sbjct: 544 DLNK 547
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + A + SM ++G++P+ +N +I G + A + E M
Sbjct: 252 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM- 310
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY+ ++G+ GN +A + G S +V TY +LI+ KAR+
Sbjct: 311 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 370
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+++M G+ P+ +++G + L+ L + G+ +
Sbjct: 371 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 430
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C L R++E ++ + + +P+V+ +S II + LD M ++
Sbjct: 431 IHGHCVLERMEEALGVVQEMVEKGLAPDVV--SYSTIISGFCRKGELDRAFQMKQEMVEK 488
Query: 351 GLS 353
G+S
Sbjct: 489 GVS 491
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 3/239 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + L Y +I + ++ A + M +G PD +N+L+ G+
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQ 337
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL + MV + P+ TY A I+ N++ +++ G N +TY +LI
Sbjct: 338 ALVIHAEMVRNG-VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 396
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G + + R EM G PS+ + G C +++ ++ ++ G
Sbjct: 397 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLA 456
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ ++ +C G +D + + + + SP+ + + G+ + L++ D
Sbjct: 457 PDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 515
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 6/252 (2%)
Query: 169 MVSSEEYKPNSKTYDAFISGF-SSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ S + P +Y++ + S G+V + + Y I + S NV TY LI G
Sbjct: 167 LAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCS 226
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + EM G +P++ +++ C ++D LK + G + N
Sbjct: 227 VGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLIS 286
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ C G + E E LE + +P+ + ++ ++ Y
Sbjct: 287 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT--YNTLLNGYCKEGNFHQALVIHAE 344
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAG 405
M + G+S S +I S + +R F D ++ + TY L+ G+ R G
Sbjct: 345 MVRNGVS-PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403
Query: 406 LSGKLDSVINEM 417
L + ++NEM
Sbjct: 404 LLNEAYRILNEM 415
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ PD + +LI A GD+ AL L + M+ + + P++ TY I+G +
Sbjct: 524 GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMI-HKGFLPDAVTYSVLINGLNKQARTRE 582
Query: 198 MNKW---------------YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ Y I ++ ++ +LI G DR +E M+
Sbjct: 583 AKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVE 642
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + ++ G C L + + K ++ G+ + L+K + G +E
Sbjct: 643 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEE 702
Query: 303 LEEQL-ETLTKC 313
+ E + +TL C
Sbjct: 703 MSEVIGDTLRSC 714
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 105/243 (43%), Gaps = 4/243 (1%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + +M +G+ P FN L+ S + TA+ +E M S P+ TY+
Sbjct: 210 MAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRLDTAVRFYEDM-KSRGILPDVVTYNTL 268
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G+ VD K + NV ++ +++ G + A D + +EEM G+
Sbjct: 269 INGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGV 328
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELE 304
P++ +L GLC K+ + L ++ +N + K++ C C+ G +D
Sbjct: 329 KPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNALFMKMMSCQCKAGDLDAAA 388
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
+ L+ + + + E + +I + ++ D E + ++ ++ + + D EM
Sbjct: 389 DVLKAMVRLSIPTEA--GHYGVLIESFCKANVYDKAEKLLDKLIEKEIVLRPQNDSEMEP 446
Query: 365 CSY 367
+Y
Sbjct: 447 SAY 449
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 123/277 (44%), Gaps = 12/277 (4%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F SLI + +G V ++ LF+ M K+YDA G ++Y A
Sbjct: 160 FVSLIDSYGRAGIVQESVKLFKKM-KELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAM 218
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G T+ L+ G + D+ RFYE+M S GI+P + ++ G +K+
Sbjct: 219 LLEGVDPTRHTFNILLWGMFLSLRLDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKV 278
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + + G N ++K Y GR+D+ + E + C P V+ FS
Sbjct: 279 DEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVT--FS 336
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFK-SAEDVEMVICSYFRCAAYDRLDLFLDHIK 384
++ ++++ + +G M ++ ++ K +A ++M+ C +C A D LD D +K
Sbjct: 337 TLLPGLCDAEKMAEARDVLGEMVERYIAPKDNALFMKMMSC---QCKAGD-LDAAADVLK 392
Query: 385 GSYKLRRAT----YDFLVAGYRRAGLSGKLDSVINEM 417
+L T Y L+ + +A + K + +++++
Sbjct: 393 AMVRLSIPTEAGHYGVLIESFCKANVYDKAEKLLDKL 429
>gi|242050202|ref|XP_002462845.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
gi|241926222|gb|EER99366.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
Length = 798
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 136/316 (43%), Gaps = 47/316 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L GK + A+ +F M A G+ PD+ FN+LI SG+ A LF M+
Sbjct: 188 YNTLIDLYGKAGRLKNALDMFLDMPAHGVMPDTYTFNTLINIFGLSGNSAQAEVLFASMM 247
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP++KTY+ ++ F+S+G+++ + K+Y Q ++ +H
Sbjct: 248 -VRGVKPDTKTYNVMMTVFASIGDLERVLKYY-----------YQIGKACLH-------- 287
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
P +L+ LC R+ V+ ++ +L G ++E +
Sbjct: 288 ----------------PDAVSYRILLQLLCERKMAHEVEDLIEGILSSGCSVHEQSLPIV 331
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY---SVGRM 347
+K Y +LG +D E + + + + FS I+ +A ++ E+ S +
Sbjct: 332 MKMYVDLGLLD---EAIAFFERHCRGKGISSKNFSAIMDAFAEKGLWEEAEHIFCSERGV 388
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGL 406
G + K + ++I +Y + YDR+ L+ ++ S TY+ L+ + G
Sbjct: 389 GNE----KDIVEYNVMIKAYGQAKQYDRVSSLLESMEESGVSSDECTYNSLIQMFSVGGF 444
Query: 407 SGKLDSVINEMKFAEY 422
+ ++ +MK A +
Sbjct: 445 PHRAKKLLGKMKDAGF 460
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 85/211 (40%), Gaps = 13/211 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----VSSEEYKPNSKTY 182
A H+F S G + D +N +I A + SL E M VSS+E TY
Sbjct: 378 AEHIFCSERGVGNEKDIVEYNVMIKAYGQAKQYDRVSSLLESMEESGVSSDEC-----TY 432
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMM 241
++ I FS G K AGF +TY ++I S +++D F EM
Sbjct: 433 NSLIQMFSVGGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSCHCLVPEAIDLF-NEMK 491
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G+ P++ + +++ + + L G N + L+K Y +
Sbjct: 492 TSGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWK 551
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
E ++ + + P+++ + ++ LYA
Sbjct: 552 EAQDLYSRMNDMDGGPDIIAS--NAMLNLYA 580
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 7/211 (3%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
GNE + EY +I G+ + + SME G+ D +NSLI G A
Sbjct: 389 GNEKDIVEYNVMIKAYGQAKQYDRVSSLLESMEESGVSSDECTYNSLIQMFSVGGFPHRA 448
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L M + ++P +TY A I +S V + +G NV Y LI
Sbjct: 449 KKLLGKMKDA-GFEPKCETYSAIIRSYSCHCLVPEAIDLFNEMKTSGVEPNVIVYGILID 507
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC---ARRKLDRVKSFLKFLLGGG 279
+ + + + GI P+ +L +++ + ++ + S + + GG
Sbjct: 508 MFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMNDMDGGP 567
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETL 310
I N ++ Y +L V E +E E+L
Sbjct: 568 DIIASN---AMLNLYAKLEMVTEAKEIFESL 595
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 5/280 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A M +PD +N+LI G+V A L E + PN TY +
Sbjct: 332 AKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIR-RGLAPNKLTYTPLV 390
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G + +G V++ +Y +LIHG + A + D+ + MM+ GI+
Sbjct: 391 HGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGIL 450
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I ++ GL + KL K L +L + + LV + G +DE ++
Sbjct: 451 PDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKL 510
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + P V+ ++ +I+ ++ S +D+ + +M ++ +I
Sbjct: 511 FQLIIEKGLDPGVV--GYNVMIKGFSKSGMMDNAILCIDKM-RRAHHVPDIFTFSTIIDG 567
Query: 367 YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
Y + + L +F +K + K TY L+ GY R G
Sbjct: 568 YVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKG 607
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 7/215 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A+ + M +GI PD+ ++N L+ G LS+ ++M+
Sbjct: 421 YGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKG----KLSMAKVML 476
Query: 171 SS---EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + P++ Y + GF GN+D K + I G V Y +I G K+
Sbjct: 477 TEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKS 536
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D+ ++M +P I +++G + ++ V ++ K N
Sbjct: 537 GMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTY 596
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ YC G E+ + P V+ +
Sbjct: 597 TSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTY 631
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ + N+ A +F + +G+ P +N +I SG + A+ + M
Sbjct: 491 YATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMR 550
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ T+ I G+ N++A+ K + + NV TY SLI+G + +
Sbjct: 551 RAH-HVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGET 609
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
++ + M S G+ PS+ ++ C KL + S+ + +L
Sbjct: 610 KMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELML 655
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 5/263 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S+ ALI L + L + R+ M +G + Y L+ K + A +
Sbjct: 419 ISYGALIHGLVVAGEVDTALTIRDRM--MNRGILPDANIYNVLMNGLFKKGKLSMAKVML 476
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
T M Q I PD+ V+ +L+ + G++ A LF++++ + P Y+ I GFS
Sbjct: 477 TEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIE-KGLDPGVVGYNVMIKGFSK 535
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G +D A ++ T+ ++I G +K + ++V + + M+ P++
Sbjct: 536 SGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVT 595
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL- 310
++ G C + + + + G K + L+ +C+ ++ + E +
Sbjct: 596 YTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELML 655
Query: 311 -TKCNQSPEVLLHFFSGIIRLYA 332
KC + + +G A
Sbjct: 656 INKCTPNDAAFHYLVNGFTNTKA 678
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 13/232 (5%)
Query: 100 MLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN---SLICACL 154
++K + S YAC L+ L K + + A ++ M + D V N S++ L
Sbjct: 159 VVKLHNSLPSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGL 218
Query: 155 C-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
C G + + L E + PN Y+ I G+ G V++ K + GF
Sbjct: 219 CLKGRIEDGIKLIESR-WGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPT 277
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD---RVKS 270
+QT+ SL++G K F+++D EM G+ ++ + +++ AR KL + K
Sbjct: 278 LQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIID---ARYKLGFDIKAKD 334
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
LK + + + L+ +C G V+E E+ LE + +P L +
Sbjct: 335 TLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTY 386
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 8/232 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQN 123
F + S++ LI +L K Q + W L D KG S + +A + + +
Sbjct: 151 GFKHTTESYNLLIEALG----KIKQFNVIWNLVSDMKRKGILS-RETFALITRRYARARK 205
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ F ME G + + FN L+ S +V A +F+ M +KP+ K+Y
Sbjct: 206 VKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGR-FKPDIKSYT 264
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G+ N+ +N+ Y GF +V T+ LI+ KAR +D R + EM +
Sbjct: 265 ILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK 324
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
I PS + ++ GL + ++L F + L G+ +V YC
Sbjct: 325 NIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYC 376
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 100/261 (38%), Gaps = 51/261 (19%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + + LI K + A+ +F MEA+ IKP VF +LI +
Sbjct: 289 EGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKE 348
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFS-------SLGNVDAMNKWYAANIAAGFSVNV 214
AL FE + S + P + TY+A + + + VD M K +G N
Sbjct: 349 ALEFFEQLKLSG-FAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRK-------SGVGPNS 400
Query: 215 QTYESLIHGSLKARD------------------------------------FDSVDRFYE 238
+TY+ ++H +K R D + ++
Sbjct: 401 RTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWD 460
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM + G++P + + ++ LC KL+ ++ + +L G + M L + + G
Sbjct: 461 EMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDG 520
Query: 299 RVDELEEQLETLTKCNQSPEV 319
R D E + K ++P V
Sbjct: 521 RKDTALLMAEKIKKLRKAPLV 541
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM++ + + G KPD ++N+++ A+ +++ M E +P+ T
Sbjct: 243 KNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKM-KEEGVEPDQIT 301
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I G S G V+ + + AG+ + TY SL++G + + EEM
Sbjct: 302 YNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEME 361
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P+ +L GLC R +D+ + + G K+ N LV+ + G+V
Sbjct: 362 ARGCAPNDCTYNTLLHGLCKARLMDKGMELYELMKSSGVKLETNGYATLVRSLVKSGKVA 421
Query: 302 ELEE 305
E E
Sbjct: 422 EAYE 425
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
++ SG+V+ M++ T ++A G +PD+A + SL+ G+ + ALSL E M +
Sbjct: 309 LSKSGRVEEA--RMYLKTMVDA-GYEPDTATYTSLMNGMCRKGESLGALSLLEEM-EARG 364
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
PN TY+ + G +D + Y ++G + Y +L+ +K+
Sbjct: 365 CAPNDCTYNTLLHGLCKARLMDKGMELYELMKSSGVKLETNGYATLVRSLVKS 417
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 54/387 (13%)
Query: 73 SWDALIT-SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ LI S + +KA+ L+W + K + + Y+ +I K + A+ +F
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPD---VFSYSTVINDLAKAGKLDDALELF 207
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +G+ PD +N LI L D TA+ L++ ++ PN KT++ ISG S
Sbjct: 208 DEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSK 267
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD K + ++ TY SLIHG A + D + + E+ +
Sbjct: 268 CGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVT 327
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-------QKLVKCYCELGRVDE-- 302
+L G C + ++K L+ W+I E+ L+K E G++DE
Sbjct: 328 YNTMLGGFC---RCGKIKESLEL-----WRIMEHKNSVNIVSYNILIKGLLENGKIDEAT 379
Query: 303 ------------------------------LEEQLETLTKCNQSPEVL-LHFFSGIIRLY 331
+ + L + + S L ++ ++ II
Sbjct: 380 MIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCL 439
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLR 390
RL++ V M K G+ S +I R + FL + K +
Sbjct: 440 CKKKRLEEASNLVKEMSKHGVELNS-HVCNALIGGLIRDSRLGEASFFLREMGKNGCRPT 498
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEM 417
+Y+ L+ G +AG G+ + + EM
Sbjct: 499 VVSYNILICGLCKAGKFGEASAFVKEM 525
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 15/257 (5%)
Query: 53 SQIKTTLDSVDIFAFNSSQ--FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
+IK +L+ I +S S++ LI L + K + + WRL + D+
Sbjct: 339 GKIKESLELWRIMEHKNSVNIVSYNILIKGLLENG-KIDEATMIWRL---MPAKGYAADK 394
Query: 111 YACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
I + G N V A+ V +E+ G D + S+I CLC + S
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII-DCLCKKKRLEEASNLVK 453
Query: 169 MVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+S + NS +A I G S LG + N G V +Y LI G
Sbjct: 454 EMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN---GCRPTVVSYNILICGLC 510
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
KA F F +EM+ G P + +L GLC RK+D L G + +
Sbjct: 511 KAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVM 570
Query: 286 MAQKLVKCYCELGRVDE 302
M L+ C +G++D+
Sbjct: 571 MHNILIHGLCSVGKLDD 587
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G KPD ++ L+C + AL L+ + S + + ++ I G S+G
Sbjct: 525 MLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVG 583
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D A + N+ TY +L+ G K D + + M +G+ P I
Sbjct: 584 KLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYN 643
Query: 254 KVLEGLCARRKLDRVKSFL 272
+++GLC R + F
Sbjct: 644 TIMKGLCMCRGVSYAMEFF 662
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 5/227 (2%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I + G ++N + A ++ M A+G D + I +G V AL + + + SS
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + Y + I ++ + G +N +LI G ++
Sbjct: 424 GGH-LDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGE 482
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
F EM G P++ ++ GLC K +F+K +L GWK + L+
Sbjct: 483 ASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLC 542
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRL 337
C ++D E + +V++H G+ + L D +
Sbjct: 543 GLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAM 589
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL +F+ M +P ++Y+ ++ F + +A AG + N+QTY LI
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
S K ++F+ F + M G P + V+ L KLD
Sbjct: 157 KMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLD 201
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/207 (16%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++Y +L++ ++A+ + V+ + + G+ P++ +++ C +++ ++ + FL
Sbjct: 114 IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLD 173
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLY 331
++ G+K + ++ + G++D+ E + +++ +P+V + G ++
Sbjct: 174 WMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK-- 231
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
D +E R+ + + + + ++I +C D + +K + + +
Sbjct: 232 -EKDHKTAMELW-DRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Query: 392 A-TYDFLVAGYRRAGLSGKLDSVINEM 417
TY L+ G AG K +SV NE+
Sbjct: 290 LYTYSSLIHGLCDAGNVDKAESVFNEL 316
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 135/320 (42%), Gaps = 14/320 (4%)
Query: 108 LDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
+D +C L+ G+ +++ + ME + I+P F L+ + + AL +
Sbjct: 279 VDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQV 338
Query: 166 FEIMVSSEE-----YKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYES 219
F+ + +P+ ++ I G +G D ++ + N TY
Sbjct: 339 FDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNC 398
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G KA +FD + +M G+ P++ L +++GLC ++ R F + G G
Sbjct: 399 LIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKG 458
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
K N L+ +C + ++ + E + SP+ ++++ +I ++ R++D
Sbjct: 459 LKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYY--SLISGLCIAGRMND 516
Query: 340 VEYSVGRMGKQGLSF-KSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFL 397
V ++ G S +S +V +I + + +R+ +L + + K TY+ L
Sbjct: 517 ASVVVSKLKLAGFSLDRSCYNV--LISGFCKKKKLERVYELLTEMEETGVKPDTITYNTL 574
Query: 398 VAGYRRAGLSGKLDSVINEM 417
++ + G V+ +M
Sbjct: 575 ISYLGKTGDFATASKVMEKM 594
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 8/318 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI K N A +F M +G++P+ N+L+ G V A+ F M
Sbjct: 396 YNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEM- 454
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ K N+ TY A IS F + N++ + + +++G S + Y SLI G A
Sbjct: 455 KGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRM 514
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++ G ++ G C ++KL+RV L + G K + L
Sbjct: 515 NDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTL 574
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + G + +E + K P V+ + II Y +D+ G M
Sbjct: 575 ISYLGKTGDFATASKVMEKMIKEGLRPSVVT--YGAIIHAYCSKKNVDEGMKIFGEMCST 632
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
+ ++I + R DR + L D + TY+ ++ G R + K
Sbjct: 633 SKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHK 692
Query: 410 ----LDSVINEMKFAEYM 423
+D ++ E +Y+
Sbjct: 693 AFELMDRMVEEACRPDYI 710
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
K LKGN + Y LI+ V N+ AM F M + G PD+ V+ SLI +G
Sbjct: 457 KGLKGNAAT---YTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGR 513
Query: 159 ------VVTALSL--------------------------FEIMVSSEE--YKPNSKTYDA 184
VV+ L L +E++ EE KP++ TY+
Sbjct: 514 MNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNT 573
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
IS G+ +K I G +V TY ++IH ++ D + + EM S
Sbjct: 574 LISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTS 633
Query: 245 IIPSIPILEKVL-EGLCARRKLDRVKSFLK 273
+P ++ +L + LC +DR S ++
Sbjct: 634 KVPPNTVIYNILIDALCRNNDVDRAISLME 663
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 2/199 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K + + + T ME G+KPD+ +N+LI +GD TA + E M+
Sbjct: 536 YNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMI 595
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARD 229
E +P+ TY A I + S NVD K + + N Y LI + D
Sbjct: 596 K-EGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNND 654
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D E+M + P+ +L+G+ ++ L + + ++ + + +
Sbjct: 655 VDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEV 714
Query: 290 LVKCYCELGRVDELEEQLE 308
L + +G +++L+ +E
Sbjct: 715 LTEWLSAVGEIEKLKHFVE 733
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 11/244 (4%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F+++ ++ L ++ ++A+ +L +D+ CL + + LIA + A
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDR------GCLPDITTFNTLIAALCTGNRLEEA 283
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ + + +G+ PD FN LI A GD AL LFE M +S P+ TY+ I
Sbjct: 284 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPDEVTYNTLID 342
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLG + + G + TY ++I G K + + +++M GI
Sbjct: 343 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 402
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +++GLC +K+D + ++ G + N ++ YC+ G + + + L
Sbjct: 403 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 462
Query: 308 ETLT 311
ET+T
Sbjct: 463 ETMT 466
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V++ M A+GIKPD FN+L+ A + V TA+ + E M SS P+ T+ + GF
Sbjct: 76 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGF 134
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A + A + G S T LI+G K + + ++ ++ G P
Sbjct: 135 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 194
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ GLC + + ++ G + +V C C+ G+++E + L
Sbjct: 195 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 254
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ P++ F+ +I +RL++
Sbjct: 255 MVDRGCLPDITT--FNTLIAALCTGNRLEE 282
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ QGI ++ FN+LI + A L M+S E +PN+ TY++ +
Sbjct: 388 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQPNNITYNSIL 446
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G++ A GF V+V TY +LI+G KA + M G+
Sbjct: 447 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 506
Query: 247 PSIPILEKVLEGLCARRKL 265
P+ VL+ L R +
Sbjct: 507 PTPKAYNPVLQSLFRRNNI 525
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M ++G++P++ +NS++ GD+ A + E M ++ ++ +
Sbjct: 416 KDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM-TANGFEVDV 474
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y ++ + + + E
Sbjct: 475 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 534
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V GLC R +K F+L
Sbjct: 535 MAEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFML 569
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + N+ A +F M +G+ PD F+SLI +G + AL F M
Sbjct: 365 YNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREME 424
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P++ Y I GF G + K +A G ++V TY + ++G K + F
Sbjct: 425 RSG-IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMF 483
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + EM+ G++P ++ G C +D+ + + ++ K ++ L
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543
Query: 291 VKCYC---ELGRVDELEEQL 307
+ +C E+GR EL + +
Sbjct: 544 IDGFCKAGEMGRAKELWDDM 563
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+ML KG L LI + ++P A + M + GI PDS +N+LI L
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
++ A L M + N TY+ ++GF + G + + I G + + T
Sbjct: 656 ANLEKAFILINEM-EKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGAT 714
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
Y SLI+G + + RF++EM+ G++P
Sbjct: 715 YSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 16/303 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +NV M + ME +G+ D +N+LI A G V A L SS +P
Sbjct: 272 KFENV---MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN-SFSSRGMEPGL 327
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G +G D + G + N TY +L+ + + ++E
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M G++P + ++ L L + + + G + + L+ +C G
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447
Query: 300 V-DELEEQLETLTK-CNQSPEVLLHFFSGII--RLYALSDRLDDVEYSVGRMGKQGLSFK 355
+ D L+ + E L + C F +G+ +++A +D L M ++G+
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML------FNEMVERGM-VP 500
Query: 356 SAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+I Y + D+ L+LF ++ + K + TY+ L+ G+ +AG G+ +
Sbjct: 501 DFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELW 560
Query: 415 NEM 417
++M
Sbjct: 561 DDM 563
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+++ M +GI+P+ N+LI SGD+ A M+S+ P+S +Y+
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG-IIPDSFSYN 646
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ N++ G N+ TY +++G ++ +M+ +
Sbjct: 647 TLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI 706
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
GI P ++ G ++ D +K +F
Sbjct: 707 GINPDGATYSSLINGHVSQ---DNMKEAFRF 734
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M +G +PD + N+ + +GDV ++FE + + P+ ++Y I G
Sbjct: 11 IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED-IKGYGFLPDVRSYSILIHGL 69
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G + + A GF+++ + Y +++ G K+ D EEM + P++
Sbjct: 70 TKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTV 129
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++GL +LD + G ++N + L+ + ++GR+DE LE
Sbjct: 130 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 189
Query: 310 LTKCNQSPEV 319
+ K +P V
Sbjct: 190 MMKKGLAPNV 199
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F +M+ +G D+ +N+++ SG V A E M + P TY + I G
Sbjct: 81 IFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEM-KVKHVPPTVATYGSIIDGL 139
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ + +D + + G +NV Y SLI G K D EEMM G+ P++
Sbjct: 140 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNV 199
Query: 250 PILEKVLEGLCARRKLD 266
+++ L +++
Sbjct: 200 YTWNSLMDALVKAEEIN 216
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y+ LI GKV + A + M +G+ P+ +NSL+ A + + ++
Sbjct: 158 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINE 217
Query: 162 ALSLFEIMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL F+ M +E K PN+ TY I+G + + ++ G NV TY +
Sbjct: 218 ALICFQSM---KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 274
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGG 278
+I G K + +E + G IP ++EG+ A R ++ F + L G
Sbjct: 275 MISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRG 334
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 1/164 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V +F ++ G PD ++ LI +G S+F M + ++
Sbjct: 36 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAM-KQRGFALDA 94
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ Y+A + GF G VD + V TY S+I G K D +EE
Sbjct: 95 RAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 154
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
S GI ++ + +++G ++D L+ ++ G N
Sbjct: 155 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPN 198
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K+ + A +F +++GI+ + V++SLI G + A + E M+
Sbjct: 132 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 191
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T+++ + ++ + + S N TY LI+G + + +
Sbjct: 192 K-KGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 250
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGG 279
+ F++EM G++P++ ++ GL + D F +F GG
Sbjct: 251 NKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGG 300
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y LI K + A+ M +G++ D +++LI D+ +A LF
Sbjct: 647 YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELL 706
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+ +S PN Y++ ISGF L N++A WY I ++ TY +LI G LK
Sbjct: 707 EVGLS-----PNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLK 761
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
Y EM+S GI+P I ++ GLC + +L+ + L+
Sbjct: 762 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 808
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 37/326 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-------------------- 150
Y+ LI N+ A ++T M+ GI P NSL+
Sbjct: 403 YSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAV 462
Query: 151 -CAC------------LCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
C LC G + A SL + MV+ + PN +Y+ I G GN+D
Sbjct: 463 DCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVN-QGMVPNVVSYNDMILGHCRKGNMD 521
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ ++ +A NV TY LI G+ K D + +++M+SL I P+ ++
Sbjct: 522 MASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++ + LK L G+ + +V + + G +D + + S
Sbjct: 582 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 641
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL 376
P V+ ++ +I + S+R+D + M ++GL ++ R
Sbjct: 642 PNVVT--YTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQ 699
Query: 377 DLFLDHIKGSYKLRRATYDFLVAGYR 402
DLF + ++ R Y+ +++G+R
Sbjct: 700 DLFFELLEVGLSPNRIVYNSMISGFR 725
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS----------- 171
N+ A VF+ M A+ +KP+ ++ LI GD AL LF+ M+S
Sbjct: 519 NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFN 578
Query: 172 -----------------------SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
E + P+ TY++ + GF GN+D+ Y
Sbjct: 579 TIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEF 638
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G S NV TY SLI+G K+ D + +EM G+ + +++G C RR ++
Sbjct: 639 GVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESA 698
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ LL G N + ++ + +L ++
Sbjct: 699 QDLFFELLEVGLSPNRIVYNSMISGFRDLNNME 731
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K N + + M+ +G P A F S+I AC+ G++V AL L E M+
Sbjct: 298 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 357
Query: 171 ----------------------------------SSEEYKPNSKTYDAFISGFSSLGNVD 196
+ + PN TY I G + GN++
Sbjct: 358 NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIE 417
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++ Y G +V SL+ G LKA ++ + ++E + G+ +I ++
Sbjct: 418 KASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMM 476
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
LC K+D S L ++ G N ++ +C G +D
Sbjct: 477 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMD 521
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + ++ +LI S+ + L L+ R + KG E + Y+ LI K +++
Sbjct: 638 FGVSPNVVTYTSLINGFCKSN--RIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDM 695
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F + G+ P+ V+NS+I ++ AL ++ M++ + + TY
Sbjct: 696 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMIN-DRIPCDLGTYTT 754
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G G + + Y ++ G ++ T+ L++G ++ + EEM
Sbjct: 755 LIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKN 814
Query: 245 IIPSIPILEKVLEG 258
+ PS+ I ++ G
Sbjct: 815 MTPSVLIYNTLIAG 828
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
+ ++ ++++I+ + + +A LV W KM+ C L Y LI K +
Sbjct: 709 GLSPNRIVYNSMISGFRDLNNMEAALV--W-YKKMINDRIPCDLGTYTTLIDGLLKEGRL 765
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
FA ++ M ++GI PD F+ L+ G + A + E M + P+ Y+
Sbjct: 766 VFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM-DRKNMTPSVLIYNT 824
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
I+G+ GN+ + + G + TY+ LI+G K
Sbjct: 825 LIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKG 867
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 2/198 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIM 169
Y CLI + + A + M +G PD + +++ LC + L L E M
Sbjct: 242 YNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVM-GFLCKEKRIKELRLLMEKM 300
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+ TY+ F+ S G+ D ++ F V+ Y +++H +
Sbjct: 301 LKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGR 360
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D EM S G IP + V+ GLC RK+D+ K L+ + G K N
Sbjct: 361 MDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTA 420
Query: 290 LVKCYCELGRVDELEEQL 307
L+ C+ G E E +
Sbjct: 421 LLNGLCKNGNSLEAREMM 438
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 9/228 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M ++G PD + S+I LC V + KPN+ +Y A +
Sbjct: 364 AKEIVNEMFSKGCIPDVVTYTSVING-LCQERKVDQAKKMLRQMYKHGCKPNTVSYTALL 422
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G GN + + + N TY L+HG + EM+ G
Sbjct: 423 NGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFF 482
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + +++ LC K+D K F++ L G +N ++ +C+ D+LE
Sbjct: 483 PTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQ---KDDLEAA 539
Query: 307 LETLTK---CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L L N+ P+V+ ++ II R+++ +M + G
Sbjct: 540 LSLLDDMYLSNKHPDVVT--YTTIIDALGKKGRIEEATKLAMKMLRVG 585
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 47/246 (19%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNS 179
+ V A + M G KP++ + +L+ +G+ +L E+M SEE + PN+
Sbjct: 394 RKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGN---SLEAREMMNMSEEXWWIPNA 450
Query: 180 KTYDAFISGFSSLGN-----------------------------------VDAMNKWYAA 204
TY + GF G VD ++
Sbjct: 451 ITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQ 510
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G +VNV + ++IHG + D ++ ++M P + +++ L + +
Sbjct: 511 CLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGR 570
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL-------TKCNQSP 317
++ +L GW + ++ YC +GRV++L + LE + T NQ
Sbjct: 571 IEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVI 630
Query: 318 EVLLHF 323
E L F
Sbjct: 631 EKLCSF 636
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 128/304 (42%), Gaps = 13/304 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++N AM T M+ GI+PD ++ N+ I + + A+ E M E P
Sbjct: 182 AGKLRN---AMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERM-QIVEIXP 237
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G+ L ++ + A G S + +Y +++ K + +
Sbjct: 238 NVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLM 297
Query: 238 EEMMS-LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E+M+ ++P + L D FL+ +++++ +V +C
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
GR+D+ +E + + P+V+ ++ +I ++D + + +M K G +
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVT--YTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 415
Query: 357 AEDVEMVICSYFRCAAYDRLDL--FLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSV 413
++ C + L+ ++ + + + A TY L+ G+RR G S + +
Sbjct: 416 VSYTALL---NGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDL 472
Query: 414 INEM 417
+ EM
Sbjct: 473 VREM 476
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F ++I D+ ALSL + M S ++ P+ TY I G ++ K
Sbjct: 523 FTTVIHGFCQKDDLEAALSLLDDMYLSNKH-PDVVTYTTIIDALGKKGRIEEATKLAMKM 581
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G+ TY ++IH + + + + E+M+S + +V+E LC+ L
Sbjct: 582 LRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSFGNL 639
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ L +L KI+ N L++ Y G
Sbjct: 640 EQAYKLLGKVLRTASKIDANTCHMLIESYLSKG 672
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 1/195 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I S K+ V A+ +F ME G++ D+ +NSL+ CSG A L MV
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T+ A I F G K Y +V TY SLI+G
Sbjct: 237 -MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 295
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + M++ G +P + ++ G C +++D + + G + +
Sbjct: 296 DEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTI 355
Query: 291 VKCYCELGRVDELEE 305
++ Y + GR D +E
Sbjct: 356 IQGYFQAGRPDAAQE 370
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 6/279 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + ME G +PD ++N++I G V A+ LF+ M + + ++ TY++ +
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAVTYNSLV 216
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G + + NV T+ ++I +K F + YEEM +
Sbjct: 217 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 276
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC ++D K L ++ G + L+ +C+ RVDE +
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + + ++ II+ Y + R D + RM + + ++ + +C
Sbjct: 337 FREMAQRGLVGDTIT--YNTIIQGYFQAGRPDAAQEIFSRMDSRP-NIRTYSILLYGLCM 393
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+R L LF + K +L TY+ ++ G + G
Sbjct: 394 NWRVEK--ALVLFENMQKSEIELDITTYNIVIHGMCKIG 430
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+ M++ +P+ ++ L+ + V AL LFE M SE + + TY+ I
Sbjct: 368 AQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE-IELDITTYNIVI 423
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GNV+ + + G +V +Y ++I G + R +D D Y +M G++
Sbjct: 424 HGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483
Query: 247 P 247
P
Sbjct: 484 P 484
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 14/200 (7%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F++++LI L +A+ +L+ + K CL + Y LI K + V
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMVTK------GCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M +G+ D+ +N++I +G A +F M S +PN +TY +
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS----RPNIRTYSILLY 389
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V+ + + +++ TY +IHG K + + + + G+ P
Sbjct: 390 GLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKP 449
Query: 248 SIPILEKVLEGLCARRKLDR 267
+ ++ G C +R+ D+
Sbjct: 450 DVVSYTTMISGFCRKRQWDK 469
>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Brachypodium distachyon]
Length = 620
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 107 CLDEYACLIALSGKV--QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
C DE+ C I + G V A M+ GI ++A +N+LI G++ AL+
Sbjct: 332 CPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALA 391
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
M + +PN TY + I G S ++ Y +A G NV TY ++IHG
Sbjct: 392 TCTRM-NEVGIEPNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGH 450
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
K D D+ R ++EM GI + + +++GLC + RV+ + F++
Sbjct: 451 AKFGDLDAAFRLHKEMAEKGISSNAITVSVLVDGLC---RESRVQDAVMFIM 499
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 41/258 (15%)
Query: 95 WRL-DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W+L D+ML +G L Y L+ ++ A V+ M A+ I P+ ++++IC
Sbjct: 145 WKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICV 204
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G V+ A LF IM+ +PN TY+A +S V+ Y + +G
Sbjct: 205 LCEEGCVIEAERLF-IMMKETGVQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVP 263
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE--------------- 257
N +LI G A V + EM GI P++P+ +++
Sbjct: 264 NAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVY 323
Query: 258 --------------------GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
GLC ++ FL+ + G +N L+ +C+
Sbjct: 324 QDMTRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKD 383
Query: 298 GRVDELEEQLETLTKCNQ 315
G L E L T T+ N+
Sbjct: 384 G---NLAEALATCTRMNE 398
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Query: 112 ACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC L G V+ F +F M ++G+ P +N+L+ AC GD+ A ++ M
Sbjct: 127 ACNAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQM 186
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V+ PN TY I G V + + G N+ TY +L+ K
Sbjct: 187 VA-RRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCKRDG 245
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK-SFLKF 274
+ Y+E++ G++P+ I+ ++ G ++ VK +FL+
Sbjct: 246 VNRTLTLYQELLKSGLVPNAVIITTLIGGFFLANRISDVKNAFLEM 291
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V+ M G+ PD + ++ C G V A E+M S N+ Y+A I
Sbjct: 319 ALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSG-INLNAAAYNALI 377
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
GN+ +A+ N G NV TY SLI G K R + Y EM++ G+
Sbjct: 378 DEHCKDGNLAEALATCTRMN-EVGIEPNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGV 436
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P++ ++ G LD K + G N LV C RV +
Sbjct: 437 EPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISSNAITVSVLVDGLCRESRVQD 493
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + +G+ PD FN LI A GD AL LFE M SS P+ TY+ I
Sbjct: 379 ALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG-CTPDEVTYNTLI 437
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SLG + +AG + TY ++I G K + + +++M GI
Sbjct: 438 DNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGIS 497
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ +++GLC +++D + ++ G + N ++ YC+ G + + +
Sbjct: 498 RNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADI 557
Query: 307 LETLT 311
L+T+T
Sbjct: 558 LQTMT 562
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 5/229 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ LI +L S + + L L ++ LKG + + LI KV + A+ +F
Sbjct: 362 TFNTLIVALCSGNRLEEALDLARQV--TLKGLSPDVYTFNILINALCKVGDPQLALRLFE 419
Query: 133 SMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M++ G PD +N+LI LCS G + AL L + M S+ + ++ TY+ I G
Sbjct: 420 EMKSSGCTPDEVTYNTLI-DNLCSLGKLGKALDLLKEMESAGCPR-STVTYNTIIDGLCK 477
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ + + G S N T+ +LI G K + D ++ +M+S G+ P+
Sbjct: 478 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNIT 537
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+L C + + + L+ + G++++ L+ C+ GR
Sbjct: 538 YNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRT 586
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 6/273 (2%)
Query: 49 QVPVSQIKTTLDSVD-IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKM-LKGNES 106
Q+ V + L+ +D +F + ++ L+ L S K +LE +M +G +
Sbjct: 127 QLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMK---LLETVYSEMGERGIKP 183
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+ + L+ + V A+ + M + G+ PD F +L+ + G + AL +
Sbjct: 184 DVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVK 243
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M+ P T + I+G+ LG V+ + IA GF + TY + ++G +
Sbjct: 244 ARMLEMG-CSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQ 302
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + M+ G P + V+ LC +L+ K L ++ G +
Sbjct: 303 NGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITT 362
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ C R++E + +T SP+V
Sbjct: 363 FNTLIVALCSGNRLEEALDLARQVTLKGLSPDV 395
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + M ++G++P++ +NS++ GD+ A + + M ++ ++ + TY I
Sbjct: 519 ANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTM-TANGFEVDVVTYGTLI 577
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G K G + Y +I + + + EM +G
Sbjct: 578 NGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEP 637
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
P + V GLC R ++ FLL
Sbjct: 638 PDAFTYKIVFRGLC--RGGGSIREAFDFLL 665
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 144/357 (40%), Gaps = 19/357 (5%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
++ ++ SL S L L +++ +G + L LI ++ ++P A V T
Sbjct: 65 FNKILGSLVKSKHYHTVLYLSQKME--FRGIKPNLVNCNILINSFCQLGHIPSAFSVLTK 122
Query: 134 MEAQGIKPDSAVFNSLICA-CLCS---------GDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ G KP++ N+LI CL G + A+ LF M+ E P+ T+
Sbjct: 123 ILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMI-LENINPDVYTFT 181
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ GF G V A + G V TY SL+ G + + + M L
Sbjct: 182 ILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQL 241
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P I ++ G C + +D LK + N L+ C+ G++
Sbjct: 242 GVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYA 301
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
+ ++ + Q P ++ +S I+ + ++D+ + +M QG+ ++
Sbjct: 302 LKLVDEMHDRGQPPNIVT--YSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILI 359
Query: 364 --ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+C + D +F D + + L TY ++ G+ GL + +++++M+
Sbjct: 360 KGLCQSGKLE--DARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKME 414
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 6/263 (2%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D Y I + G K V A +V M QGIKP +NSL+ V A S+F
Sbjct: 176 DVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIF 235
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M + P+ ++Y I+GF + +D + NV TY SLI G K
Sbjct: 236 NTM-AQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCK 294
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + +EM G P+I +L+ LC ++D + L + G + N
Sbjct: 295 SGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYT 354
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+K C+ G++++ + E L + V + ++ +I+ + D+ + +
Sbjct: 355 YTILIKGLCQSGKLEDARKVFEDLLVKGHNLNV--YTYTVMIQGFCDKGLFDEALTLLSK 412
Query: 347 MGKQGLSFKSAEDVEMVICSYFR 369
M G +A+ E++I S F+
Sbjct: 413 MEDNG-CIPNAKTYEIIILSLFK 434
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 60 DSVDIFA------FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
D+VD+F N +++ L+ + K+A+ VL M++G + + Y
Sbjct: 160 DAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMM---MIQGIKPGVVTYN 216
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVS 171
L+ V+ V A +F +M G+ PD ++ LI C ++ A+ L + M
Sbjct: 217 SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILING-FCKIKMMDEAMELLKEM-H 274
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
++ PN TY + I G G + K G N+ TY S++ K D
Sbjct: 275 HKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVD 334
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ +M + GI P++ +++GLC KL+ + + LL G +N ++
Sbjct: 335 NAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMI 394
Query: 292 KCYCELGRVDE 302
+ +C+ G DE
Sbjct: 395 QGFCDKGLFDE 405
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI GK + A +F M ++G+ D+ + +LI L +G + A S+++ M
Sbjct: 332 YTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTM- 390
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S P+ T I G S G + A + + + A G + N Y +LIHG KAR
Sbjct: 391 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 450
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M P +++GLC ++ ++F +L G K + L
Sbjct: 451 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 510
Query: 291 VKCYCELGRVD 301
+ C+ G D
Sbjct: 511 ISGLCKAGNTD 521
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 13/242 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + + A+ + M+ PD+ +N LI SGDV A + F+ M+
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 496
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ TY+ ISG GN DA A + S + Y SL+ G K+
Sbjct: 497 EAG-CKPDVYTYNILISGLCKAGNTDA-----ACGVLDDMSSSRFVYSSLVDGLCKSGKL 550
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + EM G+ S +++ LC ++D S + G + +
Sbjct: 551 EGGCMLFHEMERSGVANS-QTRTRLIFHLCKANRVDEAVSLFNAIRKEGMP-HPYAYNSI 608
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH-FFSGIIRLYALSDRLDDVEYSVGRMGK 349
+ + G+V+E + + +T+ + V + +G+I ++R+D Y M
Sbjct: 609 ISALIKSGKVNEGQAVYQEMTRWWKPDRVTYNALLNGMIG----ANRMDRAHYYYLEMTG 664
Query: 350 QG 351
+G
Sbjct: 665 RG 666
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 127 AMHVFTSMEAQ-GIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A V ME G+ P N L+ LC SG V+ A+ FE + S ++ T+
Sbjct: 173 AFAVIREMEEDFGVAPSLKTHN-LVLHGLCKSGKVLAAMDHFEAVRRSMPV--SAATFSI 229
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G G + + G ++++ TY ++++ K + E++ + G
Sbjct: 230 LINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANG 289
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P+I +L GLC +L+ L+ ++ G
Sbjct: 290 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG 324
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 1/183 (0%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD +N LI + + A ++ M P+ KT++ + G G V A
Sbjct: 151 RPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAM 210
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A + V+ T+ LI+G +KA +E + G I ++ L
Sbjct: 211 DHFEA-VRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+K+ + ++ + G L+ C++GR++E + L + +P+V
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329
Query: 320 LLH 322
+ +
Sbjct: 330 VTY 332
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 6/160 (3%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
+SS+F + +L+ L S + +L +++ N LI K V
Sbjct: 530 MSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTR---LIFHLCKANRVDE 586
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ++ +G+ P +NS+I A + SG V ++++ M + +KP+ TY+A +
Sbjct: 587 AVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM--TRWWKPDRVTYNALL 643
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+G +D + +Y G+ V L LK
Sbjct: 644 NGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLADDRLK 683
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 111/265 (41%), Gaps = 9/265 (3%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++L E +++ P TY+A ++G +G ++ + G + +V TY SLI
Sbjct: 278 AVALME-KITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 336
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + + ++EM S G+ ++ GL K+ + S K + G
Sbjct: 337 DGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCV 396
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+ ++ + GR+ +++ +P ++ +S +I + ++D
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV--YSALIHGLCKARKMDCAL 454
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD---RLDLFLDHIKGSYKLRRATYDFLV 398
+ +M K +F + + + I C + D F + ++ K TY+ L+
Sbjct: 455 EMLAQMKK---AFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 511
Query: 399 AGYRRAGLSGKLDSVINEMKFAEYM 423
+G +AG + V+++M + ++
Sbjct: 512 SGLCKAGNTDAACGVLDDMSSSRFV 536
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A++VF +G+KP+ + N+L+ G ++ AL L M S P+ TY+ I
Sbjct: 374 AINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM-SENGCSPDIWTYNLVI 432
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G +G V + IA G +V T+ +LI G K D+ + M + G+
Sbjct: 433 NGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVS 492
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L GLC K + V K ++ G N L + +C+ +V+E
Sbjct: 493 PDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNL 552
Query: 307 LETLTKCNQSPEVL 320
+E + +P+V+
Sbjct: 553 IEEMQNKGLTPDVV 566
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 3/218 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+G+ PD +N+LIC + VV A MV+ E Y+P+ TY++ I G+ LG +
Sbjct: 278 GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVN-EGYEPDGFTYNSIIDGYCKLGMM 336
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
++ GF + TY SLI+G + D D + E M G+ P++ + +
Sbjct: 337 QNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTL 396
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++GL + + + + + G + ++ C++G V + + +
Sbjct: 397 VKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P+V F+ +I Y +LD+ V RM G+S
Sbjct: 457 LPDVFT--FNTLIDGYCKKLKLDNAIEIVDRMWNHGVS 492
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 75/160 (46%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A+++ M+ +G+ PD F +L+ +GD+ A LF+ + ++
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I+ F+ N++ K + GFS + TY +I G K + +S F
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLV 661
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ G+IPS+ +VL LC +R++ + ++ G
Sbjct: 662 KIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKG 701
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 18/180 (10%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G PD FN+LI + A+ + + M + P+ TY++ ++G G
Sbjct: 453 AKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRM-WNHGVSPDVITYNSILNGLCKAGKY 511
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ + + + G N+ TY L KAR + EEM + G+ P + +
Sbjct: 512 EDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTL 571
Query: 256 LEGLCARRKLD-------RVKSFLKF----------LLGGGWKINENMAQKLVKCYCELG 298
++G C LD RV KF + K+N NMA+KL CE G
Sbjct: 572 MKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENG 631
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 13/260 (5%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-----C 151
LD + +G + Y LI K V A H M +G +PD +NS+I
Sbjct: 274 LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKL 333
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+ + D + F+ V P+ TY + I+G G++D + + G
Sbjct: 334 GMMQNADQILRDGAFKGFV------PDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLK 387
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
N+ +L+ G + + EM G P I V+ GLC + +
Sbjct: 388 PNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNL 447
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ + G + L+ YC+ ++D E ++ + SP+V+ ++ I+
Sbjct: 448 VIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVIT--YNSILNGL 505
Query: 332 ALSDRLDDVEYSVGRMGKQG 351
+ + +DV + M ++G
Sbjct: 506 CKAGKYEDVMGTFKLMMEKG 525
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 19/241 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M G PD++ ++ +I + V A LF+ M + P+ TY I
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTG-VVPDVYTYTILI 531
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
FS G + + W + G V TY +LIH LKA+ + +E M++ G
Sbjct: 532 DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCF 591
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQK--------L 290
P++ +++G C +++ + G +KI N+A+K L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C+ +V + + LET+ P ++ + +I + + +LD+ + +M +
Sbjct: 652 VDGLCKAHKVKDARDLLETMFVDGCEPNTIV--YDALIDGFCKAAKLDEAQEVFHKMVEH 709
Query: 351 G 351
G
Sbjct: 710 G 710
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 130/329 (39%), Gaps = 27/329 (8%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W LD+M++ G E + Y LI K + V A +F M A+G P+ + +LI
Sbjct: 546 W-LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGY 604
Query: 154 LCSGDVVTALSLFEIMVSSEEY---------------KPNSKTYDAFISGFSSLGNVDAM 198
SG++ A ++ M + KPN TY A + G V
Sbjct: 605 CKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDA 664
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
G N Y++LI G KA D + +M+ G P++ +++
Sbjct: 665 RDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDR 724
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L ++LD V L +L N + +++ ++ + DE + + + + P
Sbjct: 725 LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPN 784
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD- 377
V+ ++ +I + + ++D MG +G A + C A LD
Sbjct: 785 VVT--YTAMIDGFGKAGKVDKCLELFREMGSKG----CAPNFVTYTVLINHCCATGHLDE 838
Query: 378 --LFLDHIKGSYKLRR-ATYDFLVAGYRR 403
L+ +K +Y + ++Y ++ GY+R
Sbjct: 839 AYALLEEMKQTYWPKHVSSYCKVIEGYKR 867
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 97/245 (39%), Gaps = 14/245 (5%)
Query: 65 FAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
F + ++ +++AL+ L++ AQLV + L +E L +A + GK +
Sbjct: 235 FGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWR- 293
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ +E + P++ ++N +I LC F + S PN +TY
Sbjct: 294 -----EALSLIEKEDFVPNTILYNKMISG-LCEASFFEEAMDFLNRMRSTSCIPNVQTYR 347
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G + + + + IA G + + SL+H K+ DF + ++M
Sbjct: 348 ILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC 407
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSF------LKFLLGGGWKINENMAQKLVKCYCEL 297
P + ++ +C+ +L +F +L G +N+ +C C
Sbjct: 408 ECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGF 467
Query: 298 GRVDE 302
G+ ++
Sbjct: 468 GKFEK 472
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF--SSLGNV 195
G KP +N+L+ L + + TA + E + D F GF +L V
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTA------QLVHREMSELGLSMDEFTLGFFAQALCKV 289
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ + F N Y +I G +A F+ F M S IP++ +
Sbjct: 290 GKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRIL 349
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L G +++L R K L ++ G + + LV YC+ + L+ + KC
Sbjct: 350 LCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCEC 409
Query: 316 SPEVLLH 322
P +++
Sbjct: 410 KPGYVVY 416
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 34/197 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y +I GK V + +F M ++G P+ + LI C +G +
Sbjct: 779 KGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDE 838
Query: 162 ALSLFEIM--------VSS-------------------EEYKPNSKT-----YDAFISGF 189
A +L E M VSS EE + N Y I F
Sbjct: 839 AYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNF 898
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQT--YESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G ++ + + I+A S+ + Y SLI+ A + +M+ G+IP
Sbjct: 899 VKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIP 958
Query: 248 SIPILEKVLEGLCARRK 264
+ +L GL R+
Sbjct: 959 DLGTFVHLLMGLIRVRR 975
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 16/260 (6%)
Query: 74 WDALITSLQ--SSSPKKAQLVLEWRLDKMLKGNESCLDE-----------YACLIALSGK 120
WD L++ + S SP ++L+ +K + C+ + +C LS
Sbjct: 172 WDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNL 231
Query: 121 VQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
VQN A+ V+ M A GI PD + ++ A G V A + + M S +PN
Sbjct: 232 VQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSC-CEPN 290
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY++ I G+ SLG+V K A G N +TY LI G K + ++
Sbjct: 291 VVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIG 350
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
MM + + ++ C ++D +L G K+N + L+ YC+LG
Sbjct: 351 CMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLG 410
Query: 299 RVDELEEQLETLTKCNQSPE 318
V++ E L ++ N P+
Sbjct: 411 HVNKAAEVLVSMKDWNLKPD 430
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 3/167 (1%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
IA++G K +N+ + + + +G PD+ + SLI AC G V A L + M+++
Sbjct: 751 IAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINA 810
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
PN Y+A I+G GN+D + + G S V TY +LI G K
Sbjct: 811 G-LVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTE 869
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++M GI PS ++ GL K ++ L ++ G
Sbjct: 870 ALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 2/178 (1%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
W+ D + KG + Y +I K++ + A +F M+ G PD + +LI
Sbjct: 524 WK-DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYC 582
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G++V AL L + M + +++ Y++ I+G + +N A S NV
Sbjct: 583 KVGNLVEALKLKD-MSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNV 641
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
TY SLI G D Y +M+ GI P+I I K++ L K+D L
Sbjct: 642 VTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLIL 699
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ KV AM ++ ++G ++N++IC +V A +F + +
Sbjct: 504 YCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIF-LKM 562
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY I G+ +GN+ K + G S + + Y SLI G ++ +
Sbjct: 563 KELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEEL 622
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ EM + + P++ ++ G C + +D+ + ++ G N + K+
Sbjct: 623 QKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKI 682
Query: 291 VKCYCELGRVDE 302
V G++DE
Sbjct: 683 VSSLYRHGKIDE 694
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 3/184 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ +V A V SM+ +KPDS +N+L+ D + A L + M ++
Sbjct: 408 KLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEM-HNKGVNFTV 466
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ + +G+V+ A++ W + G + N TY +L+ K FD ++
Sbjct: 467 VTYNTLLKNLFHVGHVEHALHIWNLMH-KRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWK 525
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ +S G SI + ++ G C KL + + + G+ +E + L+ YC++G
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585
Query: 299 RVDE 302
+ E
Sbjct: 586 NLVE 589
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ Y+ I+G N+D + + + + GF + TY SLIH +
Sbjct: 745 NNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLR 804
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++M++ G++P+I + ++ GLC LDR + L G L+ YC+
Sbjct: 805 DDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKG 864
Query: 298 GRVDELEE 305
GR E E
Sbjct: 865 GRTTEALE 872
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 118/304 (38%), Gaps = 13/304 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A+ + +M G+K ++ + NSLI G V A E++V
Sbjct: 364 YGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAA---EVLV 420
Query: 171 SSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
S +++ KP+S Y+ + GF + K G + V TY +L+
Sbjct: 421 SMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVG 480
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + M G+ P+ +L+ DR K L G+ + +
Sbjct: 481 HVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYN 540
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
++ +C++ ++ + +E + + P+ + + G ++ L + L + S
Sbjct: 541 TMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMS--- 597
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAG 405
+ G+S S E +I FR +L+ L +K TY L+AG+ G
Sbjct: 598 -ERDGIS-SSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKG 655
Query: 406 LSGK 409
+ K
Sbjct: 656 MMDK 659
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 98 DKMLKGNESCLDEYA--CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D +LKG C D Y LI V V A + M G+ P+ V+N+LI
Sbjct: 771 DLLLKG--FCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCK 828
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
SG++ A LF ++ + P TY+ I G+ G + G +
Sbjct: 829 SGNLDRARRLFN-KLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSI 887
Query: 216 TYESLIHG-SLKARDFDSVDRFYEEMMSLG 244
TY +LIHG ++ + SV EMM G
Sbjct: 888 TYSTLIHGLYMEGKSEQSVG-LLNEMMKAG 916
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I KV N A+ +F M QG++P+ F+ LI G V+ A L E+M+
Sbjct: 240 YSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMI 299
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + I GF +G++++ + + + + G+ +V +Y LI+G K
Sbjct: 300 QI-GIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKV 358
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ + + EM+ +G+ P + +L+ L K+D K + +
Sbjct: 359 EEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVI 403
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 21/291 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-SEEY----KPNSKT 181
A +F M+ G P+ + +LI G++ AL + M++ + Y +PN +
Sbjct: 180 ATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVIS 239
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y I G +GN + + + G NV T+ LI K + E M+
Sbjct: 240 YSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMI 299
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+GI+P++ +++G C L+ K + G++ + L+ YC+ +V+
Sbjct: 300 QIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVE 359
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGI-IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
E + + P+V SG+ ++ L+ ++DD + + R+ K A
Sbjct: 360 EAMKLFNEMLHVGMWPDVKT---SGVLLKALFLAGKVDDAK-ELFRVIK-----PYAMPK 410
Query: 361 EMVICSYF------RCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ IC F ++ + LF + + KL T+ L+ G +AG
Sbjct: 411 DLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAG 461
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
Query: 113 CLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
C I L G +N + AM +F +E+ +K D F LI +G + TA LFE +
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFE-KL 473
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P++ Y + I GF G VD N + G S ++ TY L+ G ++
Sbjct: 474 YEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKL 533
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK----LDRVKSFL 272
+ V + M+ + P I V + +C K LD ++ F
Sbjct: 534 EKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFF 579
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 99/237 (41%), Gaps = 3/237 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V ++ A +F SM ++G +PD +N LI + V A+ LF M+
Sbjct: 310 YTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEML 369
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ KT + G VD + + ++ + G K
Sbjct: 370 HVGMW-PDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYI 428
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + E+ S + I +++GLC KL+ + L G + + +
Sbjct: 429 FEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSM 488
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ +C+ G+VD+ + + + SP+++ +S ++R + S++L+ V + RM
Sbjct: 489 IHGFCKKGQVDKANILFQKMEENGCSPDLIT--YSILMRGFYESNKLEKVVQLLHRM 543
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 34/205 (16%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K V AM +F M G+ PD L+ A +G V
Sbjct: 336 KGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDD 395
Query: 162 ALSLFEIM----------------------------------VSSEEYKPNSKTYDAFIS 187
A LF ++ + S K + +T+ I
Sbjct: 396 AKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLID 455
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G ++ + + G + Y S+IHG K D + +++M G P
Sbjct: 456 GLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSP 515
Query: 248 SIPILEKVLEGLCARRKLDRVKSFL 272
+ ++ G KL++V L
Sbjct: 516 DLITYSILMRGFYESNKLEKVVQLL 540
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 5/272 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDE 110
V++ + D + + ++ ++ AL+ + ++ L ++M +G E L
Sbjct: 54 VAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFAL---FEEMRRGGVEPNLYT 110
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + A +F M +GI + +N+LI G + A L ++M
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM- 169
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E +P+ T++ + G+ G + ++ AAGF + TY LI G +ARD
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+R +M G+ P+ +++ + + L + G +++ + L
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVL 289
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
V+ C G + + + +++ + P +++
Sbjct: 290 VRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 120/324 (37%), Gaps = 5/324 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L + K ++ LD AC ++G K +V A VF M G+ P+ + +L+
Sbjct: 25 LARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYF 84
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G +LFE M +PN TY+ I + G + + G NV
Sbjct: 85 THGQREKGFALFEEMRRGG-VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNV 143
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
+Y +LI G + + + M + G PSI +++G K+ F
Sbjct: 144 VSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+ G++ + L+ +C + L + + P + ++ +I +A
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVT--YTILIDSFARE 261
Query: 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATY 394
+ + + M K GL + +V D LF + + Y
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Query: 395 DFLVAGYRRAGLSGKLDSVINEMK 418
D ++ GY R G S K +I EM+
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMR 345
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 107/269 (39%), Gaps = 5/269 (1%)
Query: 154 LCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC+ GDV +AL++ S + + A ++G G+V + + G +
Sbjct: 12 LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N TY +L+HG + +EEM G+ P++ ++ C + +R +S
Sbjct: 72 NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ G N L+ C G++ + + L+ + P ++ F+ ++ Y
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT--FNLLVDGYG 189
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRR 391
+ ++ + +M G SA M+I + R R + L +K + +
Sbjct: 190 KAGKMSNALPFFNQMKAAGFQ-PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
TY L+ + R GK ++ M+ A
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKA 277
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 8/317 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ML+ N+ + L+ + + A ++ M++ G+KPD FN+L A G
Sbjct: 453 DEMLQPNDRTCN---ILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 509
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
TA + + + KPN +T ++G+ G ++ +++ G N+ +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SLI G L D D V + M G+ P + ++ + + R + +L
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
GG + + L K Y G ++ E+ L + K P V++ ++ II + + +
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVI--YTQIISGWCSAGEM 687
Query: 338 DDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATYD 395
+M G GLS + E +I + + + L ++G + R T
Sbjct: 688 KKAMQVYKKMCGIVGLS-PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQ 746
Query: 396 FLVAGYRRAGLSGKLDS 412
+ G++ G+S D+
Sbjct: 747 LIADGWKSIGVSNSNDA 763
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/416 (20%), Positives = 171/416 (41%), Gaps = 44/416 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 288 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 347
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L +++K ++ L + +I S + N+
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL--FNAIINASSESGNL 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L ++M+ E +PN +T +
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 185 FISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMS 242
+ + + + +A N Y + G +V T+ +L + + D M+
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQ-SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLH 524
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ ++ G C K++ F + G N + L+K + + +D
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ E ++ + + P+V+ FS ++ ++ SVG M
Sbjct: 585 VGEVVDLMEEFGVKPDVVT--FSTLMNAWS----------SVGDMK-------------- 618
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
RC +++ D ++G + L GY RAG K + ++N+M+
Sbjct: 619 ------RCE-----EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 21/262 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI KV A+ + ++ ++P+ ++N++I + +C +V A LF M
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDS-MCKVKLVNEAFDLFSEM 251
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGN----VDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
VS + P+ TY A ISGF LG +D NK NI +V T+ L++
Sbjct: 252 VS-KGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKP----DVYTFNILVNAFC 306
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K ++ MM GI P+ +++G C +++++ KS + GG +
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
++ +C++ + DE + + + N P+V+ +S +I + S R+ V
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT--YSSLIDGLSKSGRISYALQLVD 424
Query: 346 RMGKQGLSFKSAEDVEMVICSY 367
+M +G V IC+Y
Sbjct: 425 QMHDRG--------VPPNICTY 438
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 12/244 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M QGIKP+ +NSL+ +V A S+F M P+ ++Y I+GF
Sbjct: 317 VFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG-VNPDIQSYSIMINGF 375
Query: 190 SSLGNVD-AMN---KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ D AMN + + NI +V TY SLI G K+ + ++M G+
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIP----DVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+I +L+ LC ++D+ + L G++ + + L+K C+ G++++ +
Sbjct: 432 PPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK 491
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
E L + +V + ++ +I+ + + ++ + +M G A+ E++I
Sbjct: 492 VFEDLLVKGYNLDV--YAYTIMIQGFCVEGLFNEALALLSKMEDNG-CIPDAKTYEIIIL 548
Query: 366 SYFR 369
S F+
Sbjct: 549 SLFK 552
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 135/336 (40%), Gaps = 9/336 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
F ++ ++ SL S L L +++ +G + L LI ++ +PFA VF
Sbjct: 86 FEFNKILGSLVKSKHYHTVLYLSQKME--FRGIKPNLVNCNILINCFCQLGLIPFAFSVF 143
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+ G PD+ F +L G + A LF V + + + +Y I G
Sbjct: 144 AKILKMGYVPDTITFTTLSKGLCLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCK 202
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G A NV Y ++I K + + + EM+S GI P +
Sbjct: 203 VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVT 262
Query: 252 LEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G C KL D + F K +L K + LV +C+ G++ E + + +
Sbjct: 263 YSALISGFCILGKLKDAIDLFNKMIL-ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
K P + ++ ++ Y L ++ + M + G++ + ++I + +
Sbjct: 322 MKQGIKPNFVT--YNSLMDGYCLVKEVNKAKSIFNTMAQGGVN-PDIQSYSIMINGFCKI 378
Query: 371 AAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+D ++LF + + + TY L+ G ++G
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + +A+ + M +G+ P+ +NS++ A + V A++L
Sbjct: 403 YSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLT-KF 461
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ ++P+ TY I G G ++ K + + G++++V Y +I G F
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLF 521
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ +M G IP E ++ L + + D + L+ ++ G +N
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y+ +I K++ AM++F M + I PD ++SLI SG + AL L +
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M PN TY++ + VD GF ++ TY LI G ++
Sbjct: 425 QM-HDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQS 483
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + +E+++ G + +++G C
Sbjct: 484 GKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVE 518
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 7/207 (3%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
CLI + K A+ + M +G+ P+ +N+++ +G + A F + +
Sbjct: 216 CLIKRTNK------ALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFF-LEMKK 268
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + + TY I GF G + K + + G +V TY + I K + D+
Sbjct: 269 RDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDN 328
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+EEM+ G +P+ V+ GLC R +++R F+ + G + N +++
Sbjct: 329 AIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIR 388
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEV 319
+C+ G +D+ + + +T + P +
Sbjct: 389 YFCDEGEIDKALDLFQKMTSGDCLPNL 415
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y +I G + A VF +M +G+ P A +N+ I LC D V A+ +FE M
Sbjct: 278 YTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFI-QVLCKKDNVDNAIVIFEEM 336
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + Y PNS TY+ I G G ++ ++ G NVQTY +I +
Sbjct: 337 VV-KGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGE 395
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D +++M S +P++ ++ + R+K D
Sbjct: 396 IDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSD 432
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/319 (17%), Positives = 121/319 (37%), Gaps = 40/319 (12%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE--------------IMVSS 172
A+ VF SM G D FN+++ S V A +LF+ +MV+
Sbjct: 155 AVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNG 214
Query: 173 -------------------EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
PN +Y+ + G+ G ++ ++ ++
Sbjct: 215 WCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEID 274
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY ++IHG A + + ++ M+ G++PS+ ++ LC + +D +
Sbjct: 275 VITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFE 334
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
++ G+ N +++ C G ++ E + + P V ++ +IR +
Sbjct: 335 EMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNV--QTYNLVIRYFCD 392
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIKGSYKL 389
+D +M G + + ++I + F D L +L ++ + +
Sbjct: 393 EGEIDKALDLFQKM-TSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVP 451
Query: 390 RRATYDFLVAGYRRAGLSG 408
R+ T++ ++ G G G
Sbjct: 452 RKFTFNRVLNGLLLTGNQG 470
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 5/291 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M + I P+ F++LI + + G + A L+ M++ +PN+ TY++ I G
Sbjct: 321 QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMIT-RGIEPNTITYNSLIYG 379
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ +D N+ ++ G ++ TY LI+G KA+ D R + +M G+I
Sbjct: 380 LCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIAD 439
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+++G C RKL K + ++ G L+ C+ G ++E L+
Sbjct: 440 TVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILD 499
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
+ KC E+ + ++ II ++++DD + +G+ + + +++
Sbjct: 500 QMHKCKM--ELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVK-RDIQSYNIMLSGLC 556
Query: 369 RCAAYDRLD-LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ ++ D LF + Y+ TY+ L+ + R +I EMK
Sbjct: 557 KRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMK 607
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI+P++ +NSLI + A + ++MV S+ P+ TY+ I
Sbjct: 354 AKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMV-SKGCDPDIWTYNILI 412
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF VD + + G + TY +LI G ++R + ++EM+S G+
Sbjct: 413 NGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH 472
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +L+GLC +L+ L + +++ + ++ C +VD+
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDD 528
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ + M A G +P+ + ++ SG+ +AL L M + KP+ TY
Sbjct: 211 VSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKM-EHRKIKPHVVTYT 269
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G +D +++ G NV TY SLI +D + +M++
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
I P++ +++ L KL K ++ G + N L+ C R+DE
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEA 389
Query: 304 EEQLETLTKCNQSPEV 319
+ ++ + P++
Sbjct: 390 NQMMDLMVSKGCDPDI 405
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 3/242 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
K+ LVL LKG L +I + + + FA + G +P++ F
Sbjct: 104 KQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTF 163
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+L+ G V A+ L + MV S+ + P+ T + ++G V A +
Sbjct: 164 NTLLNGLCLEGRVFEAVELVDCMVLSQ-HVPDLITLNTIVNGLCLKDRVSEAVDLIARMM 222
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
A G N TY +++ K+ + S +M I P + +++ LC +LD
Sbjct: 223 ANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLD 282
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
SF + G K N L+ +C GR D+ + L + +P V+ FS
Sbjct: 283 DALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVT--FSA 340
Query: 327 II 328
+I
Sbjct: 341 LI 342
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 15/224 (6%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y LI K + V M +F M +G+ D+ +++LI S ++
Sbjct: 399 KGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIV 458
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGF-------SSLGNVDAMNKWYAANIAAGFSVNV 214
A +F+ MVS + P TY + G +LG +D M+K +++
Sbjct: 459 AKKVFQEMVS-QGVHPGIMTYAILLDGLCDNGELEEALGILDQMHK-------CKMELDI 510
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
Y +IHG A D + + S G+ I +L GLC R L + +
Sbjct: 511 GIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRK 570
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ G++ + L++ + + + +E + +C S +
Sbjct: 571 MKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSD 614
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M ++ D ++N +I + V A SLF + S+ K + ++Y+ +
Sbjct: 494 ALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLF-CSLPSKGVKRDIQSYNIML 552
Query: 187 SGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
SG SSL DA+ + + G+ + TY +LI L+ D + + EEM
Sbjct: 553 SGLCKRSSLSEADALFRKMKED---GYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRC 609
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
G ++ V++ L + +LD KSFL L G
Sbjct: 610 GFSSDASTVKIVMDML-SSGELD--KSFLNMLSG 640
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 17/253 (6%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V++ A V ME G+ + V++++I SG++ AL ++E MV+S +PN
Sbjct: 327 GRVKD---AWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASP-VRPN 382
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y A I G ++ G + + I + + N+ TY S+I G K D +E
Sbjct: 383 VVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWE 442
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G +P+ ++ GLC +L K +L G + ++K C G
Sbjct: 443 EMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSG 502
Query: 299 RVD-ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
VD L + L + P+V+ + G++ L +D + RM QG
Sbjct: 503 MVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD----LLNRMLDQGC--- 555
Query: 356 SAEDVEMVICSYF 368
D + V C+ F
Sbjct: 556 ---DPDTVTCNIF 565
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 7/217 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A +G+V + A+ + M A G+ A FN ++ A L +GDV A LF M +
Sbjct: 219 LADAGRVDD---AVALVHEMVADGVVAAEA-FNPVLRAMLRAGDVKGAAKLFGFM-QLKG 273
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P + TY+ + G G A G V TY +++ G ++
Sbjct: 274 CVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAW 333
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ EEM G+ + + V+ G C ++D + ++ + N + ++
Sbjct: 334 KVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGL 393
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
G++ E E + +P ++ + II+ Y
Sbjct: 394 ANFGKMTEAELLFREMIHSKCAPNIIT--YGSIIQGY 428
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI V + AM V+ M +G PD+ + S+I SG V L LF M+
Sbjct: 456 YSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDML 515
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV----DAMNKW--------------YAANIAAGFSV 212
+S P+ +Y+ + G ++ D +N+ + AG
Sbjct: 516 ASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERK 575
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ E L+ R + M++ I+P PI E V+ +C R+++ RV
Sbjct: 576 GREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVRDVCRRKRVWRV 631
>gi|414586026|tpg|DAA36597.1| TPA: hypothetical protein ZEAMMB73_327514 [Zea mays]
Length = 549
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M A G+ D +++LI +G V AL + ++M+ E +PN+ TY +
Sbjct: 153 AYEVVRWMTANGVALDVVTYSTLISGLCSAGRVAEALGVLDLMLE-EGCQPNAHTYTPIL 211
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G + + IAAGF+ + TY L+ KA F+ VD EE + G
Sbjct: 212 HAYCTSGMIHEAKELLETMIAAGFAPSTATYNVLVEALCKACAFNEVDALLEESSAKGWT 271
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
P ++GLC ++ + + + +L G + NE L+ C
Sbjct: 272 PDTITYSTYMDGLCKDGRVHKSFALVDKMLSVGLRPNEITLNILLDGVCR 321
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F + +GI P+S S++ LC G + AL L + SEE+ + TY+ I
Sbjct: 366 LFVDIVKKGIAPNSWTL-SIVIHSLCKLGRLHEALCL----IGSEEFVADVVTYNTLIRY 420
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF----DSVDRFYEEMMSLG 244
+ LG I G + N TY LI K F ++R E +S
Sbjct: 421 LNFLGKAYEAYLLLHHMIEKGIAPNDTTYSLLIDCLCKEGKFLVALGCLNRCMEGGLSKA 480
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ SI L GL A KL +++ + ++LG G+ ++ + Q+L+ +C+ G LE
Sbjct: 481 VVSSI------LRGLIAGGKLRELQALIGWILGQGFVLDVYIYQELIISFCKKGYCRGLE 534
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
A+G PD+ +++ + G V + +L + M+S +PN T + + G
Sbjct: 267 AKGWTPDTITYSTYMDGLCKDGRVHKSFALVDKMLSVG-LRPNEITLNILLDGVCRRSTA 325
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
A + G+ VNV Y +++ R + SV + + +++ GI P+ L V
Sbjct: 326 WAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRWLSVVKLFVDIVKKGIAPNSWTLSIV 385
Query: 256 LEGLCARRKLDRVKSFL 272
+ LC KL R+ L
Sbjct: 386 IHSLC---KLGRLHEAL 399
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
AA +V V Y +H FD+ M + G+ + ++ GLC+ ++
Sbjct: 133 AAACTVLVGVYACRLHW------FDAAYEVVRWMTANGVALDVVTYSTLISGLCSAGRVA 186
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
L +L G + N + ++ YC G + E +E LET+ +P
Sbjct: 187 EALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKELLETMIAAGFAP 237
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 7/245 (2%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIAL 117
D V F +Q S+ L+ L + + +L +M++ + D Y+ +I
Sbjct: 159 DKVVAQGFQMNQVSYGTLLNGLCKIGETRCAV----KLLRMIEDRSTRPDVVMYSTIIDG 214
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + V A F+ M A+GI P+ +++LI +G ++ A SL M+ + P
Sbjct: 215 LCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMIL-KNINP 273
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G V K A G +V TY S++ G K+++ D +
Sbjct: 274 NVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALF 333
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M GI P+ +++GLC +L + + LL G I+ ++ C+
Sbjct: 334 MKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKE 393
Query: 298 GRVDE 302
G D+
Sbjct: 394 GMFDK 398
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 3/253 (1%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+KG E L LI + + F+ V + G +PD+ N+L+ G+V
Sbjct: 93 VKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVK 152
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
+L F V ++ ++ N +Y ++G +G K +V Y ++
Sbjct: 153 RSLH-FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTI 211
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I G K + + F+ EM + GI P++ ++ G C +L S L ++
Sbjct: 212 IDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNI 271
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
N L+ C+ G+V E ++ L + Q +V+ ++ ++ S LD
Sbjct: 272 NPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVT--YNSVLDGLCKSQNLDKA 329
Query: 341 EYSVGRMGKQGLS 353
+M K G+
Sbjct: 330 TALFMKMKKWGIQ 342
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 8/276 (2%)
Query: 128 MHVFTS-MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH F M G+ P+ +FN + CA + A+ +F M + P+ ++ A I
Sbjct: 320 MHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKM-RQQGLSPDVVSFGALI 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + I G + N+ + SL++G ++ + + E++ GI
Sbjct: 379 DALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGIC 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ LC ++ + + ++ G + N LV +C GR+DE +
Sbjct: 439 VDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKL 498
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR-MGKQGLSFKSAEDVEMVIC 365
L+ + P ++ ++R Y + R+DD YS+ R M +G++ A ++
Sbjct: 499 LDVMVSNGLKPNEFT--YTILLRGYCKARRVDDA-YSLFREMLMKGVTPVVAT-YNTILH 554
Query: 366 SYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAG 400
F+ + +L+L+ I K TY+ ++ G
Sbjct: 555 GLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNG 590
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 149/381 (39%), Gaps = 26/381 (6%)
Query: 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQF-------SWDALITSL--QSSSPKKAQLVL 93
+IS+LL+ + K ++ DI S+F +++ +I + K L L
Sbjct: 127 VISQLLK-GLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFL 185
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
E M +G + Y +I K Q V A VF M +G+KPD+ +N LI
Sbjct: 186 EM----MDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGY 241
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
L +G + + E M S+ +P+ TY + G ++ + G +
Sbjct: 242 LSTGKWKEVVQMLEEM-STHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPD 300
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V Y L+HG + F + M+ G+ P+ I + + ++
Sbjct: 301 VAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFN 360
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ G + L+ C+LGRVD+ Q + +P + + FS ++
Sbjct: 361 KMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFV--FSSLVYGLCT 418
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSA--EDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLR 390
+ + E + QG+ + + +C+ R RL DL I+ +
Sbjct: 419 VGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLM---IRVGVRPN 475
Query: 391 RATYDFLVAGYRRAGLSGKLD 411
+Y+ LVAG+ L+G++D
Sbjct: 476 VISYNTLVAGH---CLTGRID 493
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 10/198 (5%)
Query: 134 MEAQ---------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
MEAQ G++P+ +N+L+ +G + A L ++MVS+ KPN TY
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG-LKPNEFTYTI 516
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G+ VD + + G + V TY +++HG + F + Y M++
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR 576
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I +L GLC +D + L +++ ++ + GR ++
Sbjct: 577 TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAM 636
Query: 305 EQLETLTKCNQSPEVLLH 322
+ T++ P+V+ +
Sbjct: 637 DLFATISAYGLVPDVVTY 654
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 85/198 (42%), Gaps = 7/198 (3%)
Query: 130 VFTSMEAQ---GIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
+FT M + + P++ ++ LI C C G + + F +++ + ++ N
Sbjct: 74 LFTRMARECSSKVAPNACTYSILI-GCFCRMGRLEHGFAAFGLILKTG-WRVNVIVISQL 131
Query: 186 ISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G VD ++ G +V Y ++I+G + + + EMM G
Sbjct: 132 LKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQG 191
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
I P++ V++GLC + +DR K + ++ G K + L+ Y G+ E+
Sbjct: 192 IPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVV 251
Query: 305 EQLETLTKCNQSPEVLLH 322
+ LE ++ P+ + +
Sbjct: 252 QMLEEMSTHGLEPDCITY 269
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 106/261 (40%), Gaps = 3/261 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI ++ + F + G + + V + L+ + V A + + +
Sbjct: 93 YSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRM 152
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ Y+ I+GF G V+ + + G NV TY ++I G KA+
Sbjct: 153 SEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVV 212
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +++M+ G+ P ++ G + K V L+ + G + + L
Sbjct: 213 DRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALL 272
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GR E +++ + P+V + ++ ++ YA L ++ + M
Sbjct: 273 LDYLCKNGRCREARLFFDSMFRKGIKPDVAI--YAILLHGYATKGALSEMHSFLDLMVGN 330
Query: 351 GLSFKSAEDVEMVICSYFRCA 371
G+S + ++ C+Y + A
Sbjct: 331 GVS-PNRRIFNIMFCAYAKKA 350
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 8/317 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ML+ N+ + L+ + + A ++ M++ G+KPD FN+L A G
Sbjct: 476 DEMLQPNDRTCN---ILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 532
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
TA + + + KPN +T ++G+ G ++ +++ G N+ +
Sbjct: 533 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 592
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SLI G L D D V + M G+ P + ++ + + R + +L
Sbjct: 593 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 652
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
GG + + L K Y G ++ E+ L + K P V++ ++ II + + +
Sbjct: 653 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVI--YTQIISGWCSAGEM 710
Query: 338 DDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATYD 395
+M G GLS + E +I + + + L ++G + R T
Sbjct: 711 KKAMQVYKKMCGIVGLS-PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQ 769
Query: 396 FLVAGYRRAGLSGKLDS 412
+ G++ G+S D+
Sbjct: 770 LIADGWKSIGVSNSNDA 786
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/416 (20%), Positives = 171/416 (41%), Gaps = 44/416 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 311 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 370
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L +++K ++ L + +I S + N+
Sbjct: 371 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL--FNAIINASSESGNL 428
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L ++M+ E +PN +T +
Sbjct: 429 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 488
Query: 185 FISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMS 242
+ + + + +A N Y + G +V T+ +L + + D M+
Sbjct: 489 LVQAWCNQRKIEEAWNIVYKMQ-SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLH 547
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ ++ G C K++ F + G N + L+K + + +D
Sbjct: 548 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 607
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ E ++ + + P+V+ FS ++ ++ SVG M
Sbjct: 608 VGEVVDLMEEFGVKPDVVT--FSTLMNAWS----------SVGDMK-------------- 641
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
RC +++ D ++G + L GY RAG K + ++N+M+
Sbjct: 642 ------RCE-----EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 686
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 1/195 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I S K+ V A+ +F ME G++ D+ +NSL+ CSG A L MV
Sbjct: 118 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 177
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T+ A I F G K Y +V TY SLI+G
Sbjct: 178 -MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 236
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + M++ G +P + ++ G C +++D + + G + +
Sbjct: 237 DEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTI 296
Query: 291 VKCYCELGRVDELEE 305
++ Y + GR D +E
Sbjct: 297 IQGYFQAGRPDAAQE 311
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 6/279 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + ME G +PD ++N++I G V A+ LF+ M + + ++ TY++ +
Sbjct: 99 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAVTYNSLV 157
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G + + NV T+ ++I +K F + YEEM +
Sbjct: 158 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 217
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC ++D K L ++ G + L+ +C+ RVDE +
Sbjct: 218 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 277
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + + ++ II+ Y + R D + RM + + ++ + +C
Sbjct: 278 FREMAQRGLVGDTIT--YNTIIQGYFQAGRPDAAQEIFSRMDSRP-NIRTYSILLYGLCM 334
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+R L LF + K +L TY+ ++ G + G
Sbjct: 335 NWRVEK--ALVLFENMQKSEIELDITTYNIVIHGMCKIG 371
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+ M++ +P+ ++ L+ + V AL LFE M SE + + TY+ I
Sbjct: 309 AQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE-IELDITTYNIVI 364
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GNV+ + + G +V +Y ++I G + R +D D Y +M G++
Sbjct: 365 HGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 424
Query: 247 P 247
P
Sbjct: 425 P 425
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 14/200 (7%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F++++LI L +A+ +L+ + K CL + Y LI K + V
Sbjct: 221 FTYNSLINGLCMHGRVDEAKQMLDLMVTK------GCLPDVVTYNTLINGFCKSKRVDEG 274
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M +G+ D+ +N++I +G A +F M S +PN +TY +
Sbjct: 275 TKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS----RPNIRTYSILLY 330
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V+ + + +++ TY +IHG K + + + + G+ P
Sbjct: 331 GLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKP 390
Query: 248 SIPILEKVLEGLCARRKLDR 267
+ ++ G C +R+ D+
Sbjct: 391 DVVSYTTMISGFCRKRQWDK 410
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 111/270 (41%), Gaps = 15/270 (5%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKA--QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
FN + + ALI +L K LV E + K+L G D ++ + + +
Sbjct: 115 GFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQRKLLNG-----DTFSLIARRYVRAKV 169
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ F ME G+KP + FN LI C V A LF+ M +PN K+Y
Sbjct: 170 IKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKM-RQWNLEPNLKSY 228
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G+S N+ +++ GF +V TY +I+ KA+ +D Y +M+S
Sbjct: 229 TILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLS 288
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ PS I + GL ++D F + G+ +V YC R+D+
Sbjct: 289 KNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDD 348
Query: 303 LEEQLETLTKCNQSPE------VLLHFFSG 326
+ + + P +L+H G
Sbjct: 349 AYRIVGEMKELGIGPNARTYDIILVHLIKG 378
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I G + A F +A G P++ +N+++ A S + A + I+
Sbjct: 298 YCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDA---YRIVG 354
Query: 171 SSEEYK--PNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+E PN++TYD + G +A + + + G +V TY ++
Sbjct: 355 EMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNE 414
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D + EM GI+P I + ++ LC KLD + + +L G + NM
Sbjct: 415 NQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANM 473
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+ KGN + Y +I + NV M I PD FN+LI +
Sbjct: 495 LDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIK 554
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
++ A ++F IM E +P++ TY+ I+GFS GN++ + + A+G +
Sbjct: 555 EENMHGAFNVFNIM-EKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRY 613
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
TY SLI+G + A + + ++EMM G P
Sbjct: 614 TYMSLINGHVTAGNSKEAFQLHDEMMHRGFAP 645
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 130/295 (44%), Gaps = 9/295 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + ME + + PD N LI A +GDV A++L + M +++ KP T+++ + G
Sbjct: 179 VISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM-ANKGLKPGIVTFNSVLKGL 237
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
D + + A + +V+++ LI G + + + +FY+EM G+ P +
Sbjct: 238 CKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDV 297
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ R K+D ++L+ + G G + + ++ +C G + E +
Sbjct: 298 VSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDE 357
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+ P+V+ + +G+ + + RL D E + M ++G++ +I Y
Sbjct: 358 MVGLGCLPDVVTYNTLLNGLCKQH----RLLDAEELLNEMKERGVT-PDLCTFTTLIHGY 412
Query: 368 FRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
R +++ L LF + + Y+ L+ G R G K + + ++M E
Sbjct: 413 CRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 119/292 (40%), Gaps = 5/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M G PD +N+L+ ++ A L M P+ T+ I
Sbjct: 351 ALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM-KERGVTPDLCTFTTLI 409
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ GN + + + + +V Y SLI G + D + +++M + I
Sbjct: 410 HGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIF 469
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++ C + +++ FL ++ G N ++K YC G V + ++
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF 529
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L+ + + N P+++ F+ +I Y + + ++V + ++ + A M+I
Sbjct: 530 LQKMMQDNILPDLIT--FNTLIHGYIKEENMHGA-FNVFNIMEKEMVQPDAVTYNMIING 586
Query: 367 YFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + + S + R TY L+ G+ AG S + + +EM
Sbjct: 587 FSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEM 638
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 39/243 (16%)
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEE-------------------------------- 239
VN T ++H K+ +FD D E
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214
Query: 240 ---MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M + G+ P I VL+GLC R+ D+ K + + + L+ +C
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
+G V+E + + + + +P+V+ FS +I L++ ++D + M GL
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVV--SFSCLIGLFSTRGKMDHAAAYLREMKGLGL-VPD 331
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVIN 415
MVI + R + D + G L TY+ L+ G + + ++N
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLN 391
Query: 416 EMK 418
EMK
Sbjct: 392 EMK 394
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L++ NV AM +F M QG PD+ ++ ++I +G +V A ++ M
Sbjct: 315 YSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMK 374
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +K + K Y+ I GF + ++ + AG +V TY +L+ KA DF
Sbjct: 375 KAG-FKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDF 433
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+VD M+ G PS+ ++ G C K D + + + N + L
Sbjct: 434 SAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTL 493
Query: 291 VKCYCELGRVD 301
+ C+ VD
Sbjct: 494 IDFLCKSREVD 504
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 6/192 (3%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
T +EA+G ++ +++L+ A L +V A+ LF M + + Y P++ Y ISG +
Sbjct: 304 TWLEARG---NAVTYSTLVSAFLHCNNVALAMELFHEM-ADQGYPPDAVMYFTMISGLTQ 359
Query: 192 LGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G VDA N A+ AGF ++ + Y LI G + + + +EEM G+ P +
Sbjct: 360 AGRLVDACN-IAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVY 418
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L LC V L ++ G + + LV YC+ G+ DE + ++
Sbjct: 419 TYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSM 478
Query: 311 TKCNQSPEVLLH 322
+ P +++
Sbjct: 479 GEARIQPNTVIY 490
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ G++PD +N+L+ +CLC +A+ + + +P+ T+ +
Sbjct: 401 AHQLFEEMKGAGLQPDVYTYNTLL-SCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLV 459
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G D K + + A N Y +LI K+R+ D + ++EM +
Sbjct: 460 HGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVP 519
Query: 247 PSIPILEKVLEGL 259
++ +L+GL
Sbjct: 520 ANVTTYNALLKGL 532
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 120/315 (38%), Gaps = 19/315 (6%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS-S 172
L++ G+ N+ +FTSM +KPD + L+ +G V AL + + M S
Sbjct: 137 LLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALKVLDRMSSPG 196
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI--AAGFSVNVQTYESLIHGSLKARDF 230
+ + + + G +G + + + G + N TY L + D
Sbjct: 197 SDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDI 256
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG--GGW---KINEN 285
D + E M G+ P++ + ++ GLC ++ RV + L F W + N
Sbjct: 257 DMACQIVERMEKEGVTPNVITMNTIVGGLC---RVGRVGAALDFFREKRTTWLEARGNAV 313
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF--FSGIIRLYALSDRLDDVEYS 343
LV + V E + P+ +++F SG+ + + RL D
Sbjct: 314 TYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQ----AGRLVDACNI 369
Query: 344 VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYR 402
M K G + ++I + R + +KG+ + TY+ L++
Sbjct: 370 AASMKKAGFKLDR-KAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLC 428
Query: 403 RAGLSGKLDSVINEM 417
+AG +D ++ M
Sbjct: 429 KAGDFSAVDELLGNM 443
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 9/235 (3%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V V A HVF +M G+ PD + LI S V AL+LF+ M + P++
Sbjct: 565 VYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEM-HQKNMVPDTV 623
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY + + G G + + G +V TY SLI G K D + +M
Sbjct: 624 TYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM 683
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
GI P+ +L+GLC +L + + LL G+ ++ + ++ +C+ G
Sbjct: 684 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGL- 742
Query: 301 DELEEQLETLTKCNQS---PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
LEE L L+K ++ P + F II D D E + +M +GL
Sbjct: 743 --LEEALTMLSKMEENGCIPNAVT--FDIIINALFKKDENDKAEKLLRQMIARGL 793
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 5/209 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLD-KMLKGNESCLDEYACLIALSGKVQNV 124
F +Q S+ LI + +A + ++D ++ K N ++ Y +I K Q V
Sbjct: 93 GFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPN---VEMYNTIIDALCKYQLV 149
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F+ M +GI + +++LI G + AL L +MV + PN TY+
Sbjct: 150 SEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVL-KTINPNVCTYNI 208
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G V A + A NV TY +L+ G + + M +G
Sbjct: 209 LVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 268
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ P + ++ G C +++D+ + K
Sbjct: 269 VTPDVHSYNIMINGFCKIKRVDKALNLFK 297
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 7/205 (3%)
Query: 101 LKGNESCLDEYACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+KG + + Y+ LI + GK++ A+ + M + I PD + L+ A G
Sbjct: 475 VKGISADVVTYSTLIYGFCIVGKLKE---AIGLLNEMVLKTINPDVRTYTILVDALGKEG 531
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A S+ +M+ + KP+ TY+ ++G+ + V + A G + +V TY
Sbjct: 532 KVKEAKSVLAVMLKAC-VKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTY 590
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
LI+G K++ D ++EM ++P +++GLC ++ V + +
Sbjct: 591 TILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRD 650
Query: 278 GGWKINENMAQKLVKCYCELGRVDE 302
G + L+ C+ G +D+
Sbjct: 651 RGQPADVITYNSLIDGLCKNGHLDK 675
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 3/198 (1%)
Query: 117 LSGKVQNV--PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
L +QNV ++ V T + +G PD+ N+LI G V AL + ++ ++
Sbjct: 35 LPPSIQNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLL-AQG 93
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
++ N +Y I+G +G+ A K+ NV+ Y ++I K +
Sbjct: 94 FQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAY 153
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ EM GI ++ ++ G C KL L ++ N LV
Sbjct: 154 GLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDAL 213
Query: 295 CELGRVDELEEQLETLTK 312
C+ G+V E + L + K
Sbjct: 214 CKEGKVKEAKSVLAVMLK 231
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 3/202 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKP 177
K+++ A+ + +E +GI+PD N LI C C G + S+ ++ Y P
Sbjct: 318 AKMKHYSTAVSLSHRLELKGIQPDLFTLNILI-NCFCHMGQITFGFSVLAKILK-RGYPP 375
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++ T + I G G V ++ +A GF +N +Y +LI+G K D +
Sbjct: 376 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLL 435
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
++ P++ + +++ LC + + + G + L+ +C +
Sbjct: 436 RKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIV 495
Query: 298 GRVDELEEQLETLTKCNQSPEV 319
G++ E L + +P+V
Sbjct: 496 GKLKEAIGLLNEMVLKTINPDV 517
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 110/258 (42%), Gaps = 23/258 (8%)
Query: 52 VSQIKTTLDSVDIFAF---NSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
V ++K L +++ N + +++ L+ +L + K+A+ VL L +K N
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSN--- 237
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y+ L+ V V A HVF +M G+ PD +N +I V AL+LF+
Sbjct: 238 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFK 297
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-------AGFSVNVQTYESL 220
M+ S P ++ + F+ + K Y+ ++ G ++ T L
Sbjct: 298 EMILSRF--PPIIQFNKILDSFAKM-------KHYSTAVSLSHRLELKGIQPDLFTLNIL 348
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+ +++ G PS L +++GLC + ++ + F LL G+
Sbjct: 349 INCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF 408
Query: 281 KINENMAQKLVKCYCELG 298
++N+ L+ C++G
Sbjct: 409 QLNQVSYATLINGVCKIG 426
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 72/169 (42%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K + + + M +G D +NSLI +G + A++LF M
Sbjct: 625 YSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM- 683
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN+ T+ + G G + + + + G+ ++V Y +I+G K
Sbjct: 684 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLL 743
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ +M G IP+ + ++ L + + D+ + L+ ++ G
Sbjct: 744 EEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y P++ T + I G G V ++ +A GF +N +Y +LI+G + D +
Sbjct: 59 YPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAI 118
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+F ++ P++ + +++ LC + + + G N L+ +
Sbjct: 119 KFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGF 178
Query: 295 CELGRVDELEEQLETLTKCNQSPEV 319
C +G++ E L + +P V
Sbjct: 179 CIVGKLKEALGLLNVMVLKTINPNV 203
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ML+ N+ + L+ + + A ++ M++ G+KPD+ FN+L A G
Sbjct: 453 DEMLQPNDRTCN---ILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIG 509
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
TA + + + KPN +T ++G+ G ++ +++ G N+ +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SLI G L D D V + M G+ P + ++ + + R + + +L
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLE 629
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
GG + + L K Y G ++ E+ L + K P V+++
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIY 674
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/416 (20%), Positives = 169/416 (40%), Gaps = 44/416 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 288 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 347
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L ++ K ++ L + +I S + N+
Sbjct: 348 EGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTIL--FNAIINASSESGNL 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L E+M+ E +PN +T +
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNI 465
Query: 185 FISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMS 242
+ + + + +A N Y + G + T+ +L S + D M+
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQ-SFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLH 524
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ ++ G C K++ F + G N + L+K + + +D
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ E ++ + + P+V+ FS ++ ++ SVG M
Sbjct: 585 VGEVVDLMEEFGVKPDVVT--FSTLMNAWS----------SVGDMK-------------- 618
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
RC +++ D ++G + L GY RAG K + ++N+M+
Sbjct: 619 ------RCE-----EIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDA 184
A+ F M+ G+ P+ VFNSLI L D+ + ++M EE+ KP+ T+
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLM---EEFGVKPDVVTFST 606
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
++ +SS+G++ + Y + G ++ + L G +A + + ++ +M G
Sbjct: 607 LMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 245 IIPSIPILEKVLEGLCARRKLDR 267
+ P++ I +++ G C+ ++ +
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKK 689
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++ M GI PD F+ L +G+ A + M +PN Y ISG
Sbjct: 622 EIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM-RKFGVRPNVVIYTQIISG 680
Query: 189 FSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ S G + AM + + G S N+ TYE+LI G +A+ + +EM ++P
Sbjct: 681 WCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFGEAKQPWKAEELLKEMEEKNVVP 740
Query: 248 SIPILEKVLEG 258
+ ++ + +G
Sbjct: 741 TRKTMQLIADG 751
>gi|297742922|emb|CBI35789.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PDS + ++IC L G AL + ++ + +KP T++A + G L + +
Sbjct: 719 PDSVTYTTIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHGLFKLQQANVATE 778
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + ++ G + N TY +I G ++ D RF+++++ + + +L+GLC
Sbjct: 779 VFNSMVSDGVAANTITYTIIIDGLFESDQIDEAKRFWDDVIWPSKVHDNFVYAAILKGLC 838
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV- 319
KL+ FL L+ G +N L+ C+LG E ++ + K +P+
Sbjct: 839 RSGKLNEACDFLYELVDCGVTLNVVNYNILIDHACKLGSKREAYTIVQEMKKNGLTPDAV 898
Query: 320 ---LLHFFSG 326
+LH G
Sbjct: 899 TWRILHKLHG 908
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 11/261 (4%)
Query: 65 FAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
F + S+ ++ L+ +L + + KA+ V++ L+K + Y + L + N
Sbjct: 609 FGYMMSEHTYKVLLEALCRDADLCKAREVMQLMLNKEGVDQTRIYNIYLRALCL---MNN 665
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
++V M +PD N++I G V AL + + MV + P+S TY
Sbjct: 666 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYT 725
Query: 184 AFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G +LG +A++ GF V T+ +++HG K + + + M+S
Sbjct: 726 TIICGLLNLGRTEEALDVLRRVMPEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVS 785
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW--KINENMA-QKLVKCYCELGR 299
G+ + +++GL ++D K F ++ W K+++N ++K C G+
Sbjct: 786 DGVAANTITYTIIIDGLFESDQIDEAKRFWDDVI---WPSKVHDNFVYAAILKGLCRSGK 842
Query: 300 VDELEEQLETLTKCNQSPEVL 320
++E + L L C + V+
Sbjct: 843 LNEACDFLYELVDCGVTLNVV 863
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMN 199
PD N LI L S L +F ++++ E+ P+ Y+ I S + +
Sbjct: 361 PDQRTCNVLIARLLDSRTPHATLHVFRGLIAARPEFVPSLINYNRLIHQLCSFSQPNEAH 420
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + G N +Y +LI G K + S + ++EM+ G++P+ +L+G+
Sbjct: 421 GLFFDMRSRGHCPNAVSYTTLIDGYCKIGEETSAWKLFDEMLESGVVPNSLTYSVLLKGV 480
Query: 260 CARRKLDRVKSFL 272
+R ++R + +
Sbjct: 481 LCKRDVERGRELM 493
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+A L+A A+ F+ M+ +P + V+N+++ A + SG ++ AL+L+ MV
Sbjct: 140 FAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ PN TY+ + G G K + + G NV+ Y L+ A
Sbjct: 200 AAG-CAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + M G +P L GLC +++ L L GG+ + L
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + R DE +T+ + N SP+V+L ++ +IR A + R++D + M K+
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVL--YTIMIRGCAEAGRIEDALSFLDVMKKK 376
Query: 351 G 351
G
Sbjct: 377 G 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 121/309 (39%), Gaps = 55/309 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M +GI P+ ++ L+ + +G + A+ L M + P+ TY+AF+
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLPDEVTYNAFL 284
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG +G V+ + GF++ ++ Y LI G +AR FD +Y+ M+ I
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 247 PSI-----------------------PILEK------------VLEGLCARRKLDRVKSF 271
P + +++K VL+ LC L+R +
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+L ++ ++ C+ G VDE + + + + P V+ +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTY--------- 455
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
+ L D Y GR+ + + F E + + RL L + ++ S LR+
Sbjct: 456 ---NALIDGFYREGRLEEARMLFHKMEMGN-------NPSLFLRLTLGANQVRDSESLRK 505
Query: 392 ATYDFLVAG 400
+D +G
Sbjct: 506 LVHDMCQSG 514
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
A G+ S+ F +L+ A +G A+ F M + +P + Y+ + G
Sbjct: 129 RAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRM-DEFQSRPTAFVYNTILKALVDSGV 187
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+ Y +AAG + N TY L+ G K + ++EM+ GI+P++ I
Sbjct: 188 ILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L LC K+D L + G +E + C++GRV+E ++L L
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVML 303
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 14/189 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM-------------VSSE 173
AM +F M G P +N+LI G + A LF M + +
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ + +S++ + G V K + I +G +V TY +LI+G KAR+ D
Sbjct: 496 QVR-DSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGA 554
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R ++E+ GI P +++GL + + + +L G + ++ +++
Sbjct: 555 VRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRS 614
Query: 294 YCELGRVDE 302
C + ++ +
Sbjct: 615 LCRMKKLSQ 623
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 22/204 (10%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
DS +IC G V A+ +F+ M P TY+A I GF G ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEM-GEHGCDPTVMTYNALIDGFYREGRLEEARML 474
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM----------------MSLGI 245
+ N + L G+ + RD +S+ + +M + G+
Sbjct: 475 FHK---MEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P + ++ GLC R LD K L G +E L+ R ++
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591
Query: 306 QLETLTKCNQSPEVLLHFFSGIIR 329
+ + + SP L ++ ++R
Sbjct: 592 LFQNILQSGSSPS--LSIYNSMMR 613
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+A L+A A+ F+ M+ +P + V+N+++ A + SG ++ AL+L+ MV
Sbjct: 140 FAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ PN TY+ + G G K + + G NV+ Y L+ A
Sbjct: 200 AAG-CAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + M G +P L GLC +++ L L GG+ + L
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + R DE +T+ + N SP+V+L ++ +IR A + R++D + M K+
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVL--YTIMIRGCAEAGRIEDALSFLDVMKKK 376
Query: 351 G 351
G
Sbjct: 377 G 377
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
A G+ S+ F +L+ A +G A+ F M + +P + Y+ + G
Sbjct: 129 RAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRM-DEFQSRPTAFVYNTILKALVDSGV 187
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+ Y +AAG + N TY L+ G K + ++EM+ GI+P++ I
Sbjct: 188 ILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L LC K+D L + G +E + C++GRV+E ++L L
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVML 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 38/256 (14%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M +GI P+ ++ L+ + +G + A+ L M + P+ TY+AF+
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLPDEVTYNAFL 284
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG +G V+ + GF++ ++ Y LI G +AR FD +Y+ M+ I
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 247 PSI-----------------------PILEK------------VLEGLCARRKLDRVKSF 271
P + +++K VL+ LC L+R +
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+L ++ ++ C+ G VDE + + + + P V+ ++ +I +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMT--YNALIDGF 462
Query: 332 ALSDRLDDVEYSVGRM 347
RL++ +M
Sbjct: 463 YREGRLEEARMLFHKM 478
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM------------VSSEE 174
AM +F M G P +N+LI G + A LF M
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+S++ + G V K + I +G +V TY +LI+G KAR+ D
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
R ++E+ GI P +++GL + + + +L G + ++ +++
Sbjct: 556 RLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSL 615
Query: 295 CELGRVDE 302
C + ++ +
Sbjct: 616 CRMKKLSQ 623
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA---- 197
DS +IC G V A+ +F+ M P TY+A I GF G ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEM-GEHGCDPTVMTYNALIDGFYREGRLEEARML 474
Query: 198 MNKWYAAN---------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+K N + A + ++ L+H ++ + ++ G++P
Sbjct: 475 FHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ ++ GLC R LD K L G +E L+ R ++ +
Sbjct: 535 VVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQ 594
Query: 309 TLTKCNQSPEVLLHFFSGIIR 329
+ + SP L ++ ++R
Sbjct: 595 NILQSGSSPS--LSIYNSMMR 613
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 4/236 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
++A L+L L K N + + GK+ A+ +F M ++G KPD F
Sbjct: 434 EEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHE---ALDMFGEMSSKGCKPDIFTF 490
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
NSLI ++ AL+L+ MV E NS T++ I F G + K +
Sbjct: 491 NSLIFGLCRVDEMEDALALYRDMVL-EGVIANSVTFNTLIHAFLRRGEIQEALKLVNDML 549
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G ++ TY LI K + +EEM+ G+ PSI ++ G C K+
Sbjct: 550 FRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVH 609
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
F++ ++ G+ + L+ C+ GR+ E E L P+ + +
Sbjct: 610 NALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITY 665
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F+ + ++ALI++L K L+ + KG + + + LI +V +
Sbjct: 447 GFSLNTVGYNALISALCKHG--KIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEME 504
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ ++ M +G+ +S FN+LI A L G++ AL L M+ + TY+
Sbjct: 505 DALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLF-RGCPLDEITYNGL 563
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G V+ + I G + ++ T LI+G A + F +M+ G
Sbjct: 564 IKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGF 623
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I ++ GLC R ++ + + L G + + L+ C G D+
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDD 680
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 1/173 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M G PD F++L+ G +AL L M ++ KPN TY I GF
Sbjct: 369 VYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDM-DAKGCKPNLNTYTILIDGF 427
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ + GFS+N Y +LI K + EM S G P I
Sbjct: 428 CKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDI 487
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ GLC +++ + + ++ G N L+ + G + E
Sbjct: 488 FTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQE 540
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 35/339 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ + M G PD FN++I V+ L + M+
Sbjct: 248 YQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI 307
Query: 171 SSEEYKPNSKTY-------------------------------DAFISGFSSLGNVDAMN 199
+ + PN TY + ++GF G ++
Sbjct: 308 -LKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEAT 366
Query: 200 KW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ Y I G+ +V T+ +L++G K F S +M + G P++ +++G
Sbjct: 367 AFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C + +L+ L+ +L G+ +N L+ C+ G++ E + ++ P+
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPD 486
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
+ F+ +I D ++D M +G+ S ++ R + L L
Sbjct: 487 IFT--FNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKL 544
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D + L TY+ L+ + G K + EM
Sbjct: 545 VNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 82/194 (42%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+A+G KP+ + LI G + A + M++ + + N+ Y+A I
Sbjct: 401 ALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLT-KGFSLNTVGYNALI 459
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S G + + + G ++ T+ SLI G + + + Y +M+ G+I
Sbjct: 460 SALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVI 519
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ ++ R ++ + +L G ++E L+K C+ G V++
Sbjct: 520 ANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGL 579
Query: 307 LETLTKCNQSPEVL 320
E + + +P ++
Sbjct: 580 FEEMIRKGLTPSII 593
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 6/183 (3%)
Query: 121 VQNVP-FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
V N P A +VF M ++G+ P+ F L+ LC + V L ++ PNS
Sbjct: 187 VGNCPSVASNVFYDMLSKGVSPNDYTF-GLVMKALCMVNEVDNACLLLRDMTKHGCVPNS 245
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y I S VD K G +V T+ ++I+G + + +
Sbjct: 246 MIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDR 305
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G P+ ++ GLC ++D ++ L + G N LV + GR
Sbjct: 306 MILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGP----NVVHFNTLVNGFVRNGR 361
Query: 300 VDE 302
++E
Sbjct: 362 LNE 364
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 3/143 (2%)
Query: 108 LDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LDE Y LI K V + +F M +G+ P N LI +G V AL
Sbjct: 555 LDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEF 614
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
M+ + P+ TY++ I+G G + + A G + TY +LI
Sbjct: 615 MRDMIH-RGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLC 673
Query: 226 KARDFDSVDRFYEEMMSLGIIPS 248
+ FD + G +P+
Sbjct: 674 REGAFDDACFLLYRGVENGFVPN 696
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 5/272 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDE 110
V++ + D + + ++ ++ AL+ + ++ L ++M +G E L
Sbjct: 54 VAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFAL---FEEMRRGGVEPNLYT 110
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + A +F M +GI + +N+LI G + A L ++M
Sbjct: 111 YNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMM- 169
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E +P+ T++ + G+ G + ++ AAGF + TY LI G +ARD
Sbjct: 170 RTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDM 229
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+R +M G+ P+ +++ + + L + G +++ + L
Sbjct: 230 TRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVL 289
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
V+ C G + + + +++ + P +++
Sbjct: 290 VRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 119/324 (36%), Gaps = 5/324 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
L + K ++ LD AC ++G K +V A VF M G+ P+ + +L+
Sbjct: 25 LARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYF 84
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G +LFE M +PN TY+ I + G + + G NV
Sbjct: 85 THGQREKGFALFEEMRRGG-VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNV 143
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
+Y +LI G + + + M + G PSI +++G K+ F
Sbjct: 144 VSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ 203
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
+ G++ + L+ +C + L + + P + + +I +A
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTI--LIDSFARE 261
Query: 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATY 394
+ + + M K GL + +V D LF + + Y
Sbjct: 262 NHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIY 321
Query: 395 DFLVAGYRRAGLSGKLDSVINEMK 418
D ++ GY R G S K +I EM+
Sbjct: 322 DMMIYGYGREGSSYKALKLIMEMR 345
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 107/269 (39%), Gaps = 5/269 (1%)
Query: 154 LCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC+ GDV +AL++ S + + A ++G G+V + + G +
Sbjct: 12 LCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAP 71
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N TY +L+HG + +EEM G+ P++ ++ C + +R +S
Sbjct: 72 NEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLF 131
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
+ G N L+ C G++ + + L+ + P ++ F+ ++ Y
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIIT--FNLLVDGYG 189
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRR 391
+ ++ + +M G SA M+I + R R + L +K + +
Sbjct: 190 KAGKMSNALPFFNQMKAAGFQ-PSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTK 248
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
TY L+ + R GK ++ M+ A
Sbjct: 249 VTYTILIDSFARENHMGKAFEILAGMEKA 277
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 11/244 (4%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F+++ ++ L ++ ++A+ +L +D+ CL + + LIA + A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDR------GCLPDITTFNTLIAALCTGNRLEEA 375
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ + + +G+ PD FN LI A GD AL LFE M +S P+ TY+ I
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPDEVTYNTLID 434
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLG + + G + TY ++I G K + + +++M GI
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +++GLC +K+D + ++ G + N ++ YC+ G + + + L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 308 ETLT 311
ET+T
Sbjct: 555 ETMT 558
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V++ M A+GIKPD FN+L+ A + V TA+ + E M SS P+ T+ + GF
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGF 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A + A + G S T LI+G K + + ++ ++ G P
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ GLC + + ++ G + +V C C+ G+++E + L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ P++ F+ +I +RL++
Sbjct: 347 MVDRGCLPDITT--FNTLIAALCTGNRLEE 374
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ QGI ++ FN+LI + A L M+S E +PN+ TY++ +
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMIS-EGLQPNNITYNSIL 538
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G++ A GF V+V TY +LI+G KA + M G+
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598
Query: 247 PSIPILEKVLEGLCARRKL 265
P+ VL+ L R +
Sbjct: 599 PTPKAYNPVLQSLFRRNNI 617
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M ++G++P++ +NS++ GD+ A + E M ++ ++ +
Sbjct: 508 KDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM-TANGFEVDV 566
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y ++ + + + E
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V GLC R +K F+L
Sbjct: 627 MAEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFML 661
>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 646
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++AL+ ++ ++ + A+ + E ++ L N YA L+ + + A++V+
Sbjct: 263 TYNALLYAMGRAKRARDAKAIYEEMINNGLTPN---WPTYAALLQAYCRARFNRDALNVY 319
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M+ +G D ++N L C G A+ +FE M SS +P+S TY + I+ +SS
Sbjct: 320 KEMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSS 379
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+G + M + + +GF N+ SL+H KA+ D V + + ++M LGI P
Sbjct: 380 IGKISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISP 435
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPF-AMHVFTSMEAQGIKPDSAVFNSLICACL 154
D+ML +G L ++ +I + V ++P A+ F M + G +PD V +S+I +
Sbjct: 144 FDEMLQRGVNPNLITFSTMI-ICASVCSLPHKAVKWFEMMPSFGCEPDDNVCSSMIYSYA 202
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+G+ AL L++ +E++ ++ + I GN D Y G N+
Sbjct: 203 RTGNADMALRLYD-RAKAEKWHVDTVVFSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNL 261
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSF-- 271
TY +L++ +A+ YEEM++ G+ P+ P +L+ C AR D + +
Sbjct: 262 VTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKE 321
Query: 272 -------LKFLL--------------GGGWKINENMAQ------------KLVKCYCELG 298
L LL G KI E+M L+ Y +G
Sbjct: 322 MKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIG 381
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
++ E+E + + P +++ + ++ Y + R DDV ++ G+S
Sbjct: 382 KISEMEAMFNEMMESGFEPNIIV--LTSLVHCYGKAKRTDDVVKIFNQLMDLGIS 434
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 13/227 (5%)
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+W +D ++ ++ LI + G N ++V+ ++ G KP+ +N+L+ A
Sbjct: 221 KWHVDTVV---------FSGLIKMHGMSGNYDGCLNVYNDLKVLGAKPNLVTYNALLYAM 271
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSV 212
+ A +++E M+++ PN TY A + + + N DA+N Y G +
Sbjct: 272 GRAKRARDAKAIYEEMINNG-LTPNWPTYAALLQAYCRARFNRDALNV-YKEMKEKGKDL 329
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRKLDRVKSF 271
++ Y L + +E+M S G P ++ + K+ +++
Sbjct: 330 DILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMYSSIGKISEMEAM 389
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ G++ N + LV CY + R D++ + L SP+
Sbjct: 390 FNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPD 436
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 11/244 (4%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F+++ ++ L ++ ++A+ +L +D+ CL + + LIA + A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDR------GCLPDITTFNTLIAALCTGNRLEEA 375
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ + + +G+ PD FN LI A GD AL LFE M +S P+ TY+ I
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPDEVTYNTLID 434
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLG + + G + TY ++I G K + + +++M GI
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +++GLC +K+D + ++ G + N ++ YC+ G + + + L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 308 ETLT 311
ET+T
Sbjct: 555 ETMT 558
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V++ M A+GIKPD FN+L+ A + V TA+ + E M SS P+ T+ + GF
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEM-SSRGVAPDETTFTTLMQGF 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A + A + G S T LI+G K + + ++ ++ G P
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ GLC + + ++ G + +V C C+ G+++E + L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ P++ F+ +I +RL++
Sbjct: 347 MVDRGCLPDITT--FNTLIAALCTGNRLEE 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ QGI ++ FN+LI + A L M+S E +PN+ TY++ +
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQPNNITYNSIL 538
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G++ A GF V+V TY +LI+G KA + M G+
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598
Query: 247 PSIPILEKVLEGLCARRKL 265
P+ VL+ L R +
Sbjct: 599 PTPKAYNPVLQSLFRRNNI 617
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M ++G++P++ +NS++ GD+ A + E M ++ ++ +
Sbjct: 508 KDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM-TANGFEVDV 566
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y ++ + + + E
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V GLC R +K F+L
Sbjct: 627 MAEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFML 661
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 50/322 (15%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDK--------MLK-----GNESCLDEY 111
F + +++++I L ++ + KA+ VL+ DK +LK G + + Y
Sbjct: 169 GFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTY 228
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+ LI K+ A ++F SM +G PD+ + +L+ G +V L +M+
Sbjct: 229 SLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQ 288
Query: 172 ----------------------------------SEEYKPNSKTYDAFISGFSSLGNVDA 197
+ + PN TY I G V+
Sbjct: 289 DGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVED 348
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
++ ++ G S ++ T+ SLIHG ++ V++ EM++ GI P+ L +++
Sbjct: 349 AVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMD 408
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
LC ++ F ++ G K + L+ YC G++DE + L + P
Sbjct: 409 SLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRP 468
Query: 318 EVLLHFFSGIIRLYALSDRLDD 339
+ + +S ++ Y + R+DD
Sbjct: 469 DNVT--YSALLNGYCKNGRVDD 488
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 103/252 (40%), Gaps = 37/252 (14%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIK---PDSAVFNSLICACLCSGDVVTALSLFE------- 167
S + A+ +F +M G+ D+ F LI C C+ ++ +L E
Sbjct: 66 SSQRHGAALAVSLFNTMAQVGVNKLATDACTFGILI-RCFCNVGLLD-FALEEESRGSRA 123
Query: 168 --IMVSSEEYK--PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
M++ + Y PN +Y+ I+G G VD + + GF N+ TY S+I G
Sbjct: 124 AVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDG 183
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
KA+ D + ++M G +L+ LK + GGG + +
Sbjct: 184 LCKAQAMDKAEAVLQQMFDKG-------------------QLEEAVRLLKKMSGGGLQPD 224
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
L+ YC++GR E +++ + Q+P+ + + ++ YA L D+
Sbjct: 225 VVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDA--YTYRTLLHGYATKGALVDMHDL 282
Query: 344 VGRMGKQGLSFK 355
+ M + G+ +
Sbjct: 283 LALMIQDGIPLE 294
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L GK+ ++ + M + G++PD+ +++L+ +G V AL+L+ M S ++ K
Sbjct: 447 LDGKMDE---SIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFS-KDVK 502
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ TY+ + G G V A ++Y + +G + + TY ++ G + D R
Sbjct: 503 PNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRM 562
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++ + S + ++ GL ++ KS +L G + + +++ + E
Sbjct: 563 FQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIE 622
Query: 297 LGRVDELEEQLETLTK--CNQSPEVLLHFFSGII------RLYALSDRLDDVEYSV 344
G ++E +E ++ K C + L ++ R ++D+ EYSV
Sbjct: 623 EGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEKEYSV 678
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 7/190 (3%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C I KV+ + F M +GI P++ N+++ + G V+ A F+ ++
Sbjct: 376 CTIGEWKKVEKLSF------EMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHV 429
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KP+ +Y I G+ G +D K ++ G + TY +L++G K D
Sbjct: 430 G-VKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDD 488
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
Y EM S + P+ +L GL ++ + F ++ G ++ N ++
Sbjct: 489 ALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLG 548
Query: 293 CYCELGRVDE 302
CE VDE
Sbjct: 549 GLCENSFVDE 558
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F + G+KPD + LI G + ++ L MVS +P++ TY A +
Sbjct: 419 AHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIG-LRPDNVTYSALL 477
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ G VD Y + N TY ++HG A + FY +++ GI
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQ 537
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I VL GLC +D + L +++ ++ ++GR+ + +
Sbjct: 538 LGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSL 597
Query: 307 LETLTKCNQSPEVLLH 322
+ P+ +++
Sbjct: 598 FSAILPSGLVPDAIIY 613
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 4/228 (1%)
Query: 41 NPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDK 99
N LI L L+ + Q D + F+ Q S+ LI L +A L L R+D
Sbjct: 11 NTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDG 70
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
L + + Y +I K ++V A +++ M ++GI P+ +++LI G +
Sbjct: 71 KLVQLNAVM--YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL 128
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A+ LF ++ E KP+ T++ + GF + +A + G +V TY S
Sbjct: 129 KDAIDLFNKIIL-ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNS 187
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
L+ G ++ ++ + M G+ P I ++ G C +K+D+
Sbjct: 188 LVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDK 235
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 11/217 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV A+ + ++ + ++ ++ ++N++I V A L+ MV
Sbjct: 45 YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMV 104
Query: 171 SSEEYKPNSKTYDAFISGFSSLGN----VDAMNKWYAANIAA-GFSVNVQTYESLIHGSL 225
S + PN TY A ISGF +G +D NK NI G++ N+ L+ G
Sbjct: 105 S-KGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI-----LVDGFC 158
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K R + MM GIIP + +++G ++++ KS + GG +
Sbjct: 159 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIR 218
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ +C++ +VD+ + N P V+ +
Sbjct: 219 SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTY 255
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 1/155 (0%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V+ V A +F +M G+ PD +N LI V A++LF M + PN
Sbjct: 195 VKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM-HCKNIIPNVV 253
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY++ I G S G + + G N+ TY S+I K D +
Sbjct: 254 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 313
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
GI PS+ +++GLC +L ++ + L
Sbjct: 314 KDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 11/244 (4%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F+++ ++ L ++ ++A+ +L +D+ CL + + LIA + A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDR------GCLPDITTFNTLIAALCTGNRLEEA 375
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ + + +G+ PD FN LI A GD AL LFE M +S P+ TY+ I
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG-CTPDEVTYNTLID 434
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
SLG + + G + TY ++I G K + + +++M GI
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+ +++GLC +K+D + ++ G + N ++ YC+ G + + + L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 308 ETLT 311
ET+T
Sbjct: 555 ETMT 558
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V++ M A+GIKPD FN+L+ A + V TA+ + E M SS P+ T+ + GF
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEM-SSRGVAPDETTFTTLMQGF 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A + A + G S T LI+G K + + ++ ++ G P
Sbjct: 227 VEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQ 286
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ GLC + + ++ G + +V C C+ G+++E + L
Sbjct: 287 ITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQ 346
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ P++ F+ +I +RL++
Sbjct: 347 MVDRGCLPDITT--FNTLIAALCTGNRLEE 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ QGI ++ FN+LI + A L M+S E +PN+ TY++ +
Sbjct: 480 AEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS-EGLQPNNITYNSIL 538
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + G++ A GF V+V TY +LI+G KA + M G+
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598
Query: 247 PSIPILEKVLEGLCARRKL 265
P+ VL+ L R +
Sbjct: 599 PTPKAYNPVLQSLFRRNNI 617
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M ++G++P++ +NS++ GD+ A + E M ++ ++ +
Sbjct: 508 KDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM-TANGFEVDV 566
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y ++ + + + E
Sbjct: 567 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 626
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V GLC R +K F+L
Sbjct: 627 MAEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFML 661
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 136/344 (39%), Gaps = 40/344 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIM 169
YA L+ K N+P A+ V + + + PD+ V+N I CLC G A S + M
Sbjct: 542 YATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFI-NCLCRLGKFSEAKSFLKEM 600
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ +P+ TY+ IS GN K + N+ TY +L+ G L+A
Sbjct: 601 RNT-GLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGV 659
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ EM S G P+ +VL+ R + + ++G G + +
Sbjct: 660 VEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNT 719
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV C G + L+ + +P+ + F+ +I + S LD+ + +M
Sbjct: 720 LVHVLCCHGMTRKATIVLDEMLGRGIAPDTIT--FNALILGHCKSSHLDNAFATYAQMLH 777
Query: 350 QGLSFKSAE---------------DVEMVICSYFRCA------AYD-------------- 374
QGLS A + + VIC + YD
Sbjct: 778 QGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVE 837
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
L L+ + + + + +TY+ L++ + +AG+ + + +EMK
Sbjct: 838 ALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMK 881
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 6/227 (2%)
Query: 87 KKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
+KA +VL D+ML +G + LI K ++ A + M QG+ P+ A
Sbjct: 731 RKATIVL----DEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIAT 786
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
FN+L+ +G + A ++ M +PN+ TYD ++G++ N + Y
Sbjct: 787 FNTLLGGLESAGRIGEADTVICEM-KKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEM 845
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
++ GF TY SLI KA + + EM G++ + + +L G R
Sbjct: 846 VSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNG 905
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V+ LK + G+K ++ + + + + G E L+TL K
Sbjct: 906 TEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTLFK 952
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 122/322 (37%), Gaps = 40/322 (12%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KVQ++ A+ V M QG+ D +N+L+ SGD A + E M ++ +P+
Sbjct: 201 KVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERM-KADGVEPSV 259
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+ I + + ++ Y + +G +V T +L+ G + F + E
Sbjct: 260 VTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFRE 319
Query: 240 MMSLGIIPS-----------------------------------IPILEKVLEGLCARRK 264
M +G+ P+ + + V++ L K
Sbjct: 320 MDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGK 379
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
++ K L+ L N LV +C G +D E+ L + + + SP V+ F
Sbjct: 380 IEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVT--F 437
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI 383
S I+ + + +M G++ + +I +F+C + LD++ D +
Sbjct: 438 SSILNGLVKRGCIAKAAGYMRKMKDSGIA-PNVVTYGTLIDGFFKCQGQEAALDVYRDML 496
Query: 384 KGSYKLRRATYDFLVAGYRRAG 405
+ D LV G R+ G
Sbjct: 497 HEGVEANNFIVDSLVNGLRKNG 518
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 126/314 (40%), Gaps = 7/314 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ GK + A V + I P+ + L+ A +G++ A + + +
Sbjct: 367 YTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQML-LQM 425
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T+ + ++G G + + +G + NV TY +LI G K +
Sbjct: 426 EEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQ 485
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y +M+ G+ + I++ ++ GL ++ ++ K + G ++ L
Sbjct: 486 EAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATL 545
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMG 348
+ + G + + + L + N SP+ +++ F + + RL + + + + M
Sbjct: 546 MDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRL----GKFSEAKSFLKEMR 601
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSG 408
GL A M+ L L + S K TY LV G AG+
Sbjct: 602 NTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVE 661
Query: 409 KLDSVINEMKFAEY 422
K ++NEM A +
Sbjct: 662 KAKYLLNEMASAGF 675
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 61/328 (18%), Positives = 130/328 (39%), Gaps = 39/328 (11%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I KVQ V ++ + M ++G+ D ++ +++ G + A + +
Sbjct: 332 YCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHAL 391
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY + GN+D + S NV T+ S+++G +K
Sbjct: 392 S-DNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCI 450
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M GI P++ +++G + + + +L G + N + L
Sbjct: 451 AKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSL 510
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS-----VG 345
V + G ++E E + + + G++ LD V Y+ +
Sbjct: 511 VNGLRKNGNIEEAEALFKDMGE------------RGLL--------LDHVNYATLMDGLF 550
Query: 346 RMGKQGLSFKSAEDV-------EMVICSYF-----RCAAYDRLDLFLDHIKGS-YKLRRA 392
+ G + K +++ + V+ + F R + FL ++ + + +A
Sbjct: 551 KTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQA 610
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMKFA 420
TY+ +++ R G + K ++NEMK++
Sbjct: 611 TYNTMISAQCREGNTSKALKLLNEMKWS 638
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M QGIKP+ +NSL+ +V A S+F M P+ ++Y I+GF
Sbjct: 317 VFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG-VNPDIQSYSIMINGF 375
Query: 190 SSLGNVD-AMN---KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ D AMN + + NI +V TY SLI G K+ + ++M G+
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIP----DVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+I +L+ LC ++D+ + L L G + N L+K C+ G++++ +
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARK 491
Query: 306 QLETL 310
E L
Sbjct: 492 VFEGL 496
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 13/247 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI KV A+ + ++ ++P+ ++N++I + +C +V A LF M
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDS-MCKVKLVNEAFDLFSEM 251
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGN----VDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+S + P+ TY A ISGF LG +D NK NI +V T+ L++
Sbjct: 252 IS-KGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKP----DVYTFNILVNAFC 306
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K ++ MM GI P+ +++G C +++++ KS + GG +
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQ 366
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
++ +C++ + DE + + + N P+V+ +S +I + S R+ V
Sbjct: 367 SYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT--YSSLIDGLSKSGRISYALQLVD 424
Query: 346 RMGKQGL 352
+M +G+
Sbjct: 425 QMHDRGV 431
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/335 (20%), Positives = 133/335 (39%), Gaps = 7/335 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
F ++ ++ SL S L L +++ +G + L LI ++ +PFA VF
Sbjct: 86 FEFNKILGSLVKSKHYHTVLYLSQKME--FRGIKPNLVNCNILINCFCQLGLIPFAFSVF 143
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+ G PD+ F +LI G + A LF V + + + +Y I G
Sbjct: 144 AKILKMGYVPDTITFTTLIKGLCLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCK 202
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G A NV Y ++I K + + + EM+S GI P +
Sbjct: 203 VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVT 262
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ G C KL+ ++ K + LV +C+ G++ E + + +
Sbjct: 263 YSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMM 322
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K P + ++ ++ Y L ++ + M + G++ + ++I + +
Sbjct: 323 KQGIKPNFVT--YNSLMDGYCLVKEVNKAKSIFNTMAQGGVN-PDIQSYSIMINGFCKIK 379
Query: 372 AYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+D ++LF + + + TY L+ G ++G
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 1/171 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + +A+ + M +G+ P +NS++ A V A++L +
Sbjct: 403 YSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLT-KL 461
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY I G G ++ K + + G ++NV TY +I G F
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLF 521
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ +M G IP E ++ L + + D + L+ ++ G +
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y+ +I K++ AM++F M + I PD ++SLI SG + AL L +
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M P +TY++ + + VD G N+ TY LI G ++
Sbjct: 425 QM-HDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQS 483
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ + +E ++ G ++ +++G C
Sbjct: 484 GKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVE 518
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ +LI L S L L +D+M +G + Y ++ K+ V A+ +
Sbjct: 402 TYSSLIDGLSKSGRISYALQL---VDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALL 458
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
T ++ +GI+P+ ++ LI SG + A +FE ++ + + N TY I GF
Sbjct: 459 TKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLL-VKGHNLNVDTYTIMIQGFCV 517
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G + + G + +TYE +I K + D ++ EM++ G+ P
Sbjct: 518 EGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 3/219 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G+KP+ +N++I G A +F+ M + KP+ TY++FIS
Sbjct: 243 MEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM-KDKNLKPDCYTYNSFISRLCKER 301
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ + + +G N TY +LI G D D + +EMM+ GI+ S+
Sbjct: 302 RIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYN 361
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ L ++++ + +K + G + + + YC G + + + +
Sbjct: 362 LLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEK 421
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
N P V ++ +I ++ +R+ + E + K+G+
Sbjct: 422 NIRPTV--ETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 5/260 (1%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-C 153
+R + M +G + + Y LI + + A + M +G++PD +N I C
Sbjct: 344 YRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYC 403
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
C G+ ALSLF+ MV + +P +TY + I F + + + +I G +
Sbjct: 404 RC-GNAKKALSLFDEMVE-KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD 461
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ + +LI G + D + +EM + ++P +++G C RK++ K L
Sbjct: 462 IIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLD 521
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
+ G K + L+ Y + G + + E + + P +L ++ +I+ Y+
Sbjct: 522 EMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLT--YNALIQGYSK 579
Query: 334 SDRLDDVEYSVGRMGKQGLS 353
D E + M +G++
Sbjct: 580 IGEADHAEELLREMQSKGIT 599
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 120/297 (40%), Gaps = 15/297 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F +M+ + +KPD +NS I + LC + S + PN+ TY+A I
Sbjct: 271 ASKIFKTMKDKNLKPDCYTYNSFI-SRLCKERRIEEASGVLCKLLESGLVPNAVTYNALI 329
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G++D + + G +V TY LIH + + + +EM G+
Sbjct: 330 DGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVE 389
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + G C + S ++ + L+ + + R+ E EE+
Sbjct: 390 PDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEK 449
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV-----EYSVGRMGKQGLSFKSAEDVE 361
+ K P++++ F+ +I + ++ +D E ++ ++F +
Sbjct: 450 FKKSIKEGMLPDIIM--FNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNT----- 502
Query: 362 MVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ Y R + LD +K K +Y+ L++GY + G V +EM
Sbjct: 503 -LMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEM 558
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A + M+ + PD FN+L+ V A L + M KP+ +Y
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEM-KERGIKPDHISY 535
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ ISG+S G++ + + ++ GF + TY +LI G K + D + EM S
Sbjct: 536 NTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQS 595
Query: 243 LGIIPSIPILEKVLEGL 259
GI P V+E +
Sbjct: 596 KGITPDDSTYLYVIEAM 612
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/308 (17%), Positives = 125/308 (40%), Gaps = 3/308 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I+ K + + A V + G+ P++ +N+LI C GD+ A + + M+
Sbjct: 290 YNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMM 349
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + TY+ I ++ G +V TY I+G + +
Sbjct: 350 -NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNA 408
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM+ I P++ +++ R ++ + K + G + M L
Sbjct: 409 KKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C G +D + L+ + P+ + F+ +++ Y ++++ + + M ++
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVT--FNTLMQGYCRERKVEEAKKLLDEMKER 526
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
G+ ++ R D L++F + + + TY+ L+ GY + G +
Sbjct: 527 GIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHA 586
Query: 411 DSVINEMK 418
+ ++ EM+
Sbjct: 587 EELLREMQ 594
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 132/296 (44%), Gaps = 17/296 (5%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
A +GK++ A+++ M+ QG+ + N ++ + G V A ++F + +
Sbjct: 165 AENGKLKE---AVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMF-VEMCQRGV 220
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
P+ ++ + ++G V KW A + GF V+ T +I + + V
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
++ +M+ +G+ P++ ++ GLC + + + L+ ++ GWK N L+ C
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340
Query: 296 ELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL-- 352
+ G ++ L + + P V H ++ +I Y D+L+ E + RM +QGL
Sbjct: 341 KKGWTEKAFRLFLKLVRSDGYKPNV--HTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 353 ---SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ + D + ++ R AY+ +DL K + TY+ ++ G + G
Sbjct: 399 NTNTYTTLIDGHCKVGNFVR--AYELMDLM---GKEGFSPNIYTYNAIIDGLCKKG 449
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 3/251 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + Y +I K + A + + M+ QG+ P++ + +LI G+ V A
Sbjct: 360 GYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRA 419
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L ++M E + PN TY+A I G G++D + G + TY L+
Sbjct: 420 YELMDLM-GKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMS 478
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+ D + F+ +M+ +G P I ++ C ++++ + + + G
Sbjct: 479 VHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIP 538
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ ++ YC G + + ++ +P+ + + +I +LDD
Sbjct: 539 TKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT--YGALISGLCKESKLDDARN 596
Query: 343 SVGRMGKQGLS 353
M +GLS
Sbjct: 597 LYDAMMDKGLS 607
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 42/279 (15%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL-DKM-LKGNESCLDEYACLIALSGKVQN 123
F+ + ++++A+I L KK L +RL +K+ + G ++ Y L+++ + +
Sbjct: 430 GFSPNIYTYNAIIDGL----CKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQAD 485
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
++ F M G PD + +LI + + LFE VS P KTY
Sbjct: 486 TNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLG-LIPTKKTYT 544
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I G+ GN K + G + + TY +LI G K D Y+ MM
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDK 604
Query: 244 GIIP--------------------SIPILEK------------VLEGLCARRKLDRVKSF 271
G+ P +I +L++ ++ LC+ KLD F
Sbjct: 605 GLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALF 664
Query: 272 LKFLLGGGWKINE-NMAQKLVKCY--CELGRVDELEEQL 307
LL +N + + KCY + G V EL E++
Sbjct: 665 FHKLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSERI 703
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C I + K + A +F M A G+ P + + SLI +V L + +
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELL-VEM 408
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + G S G++D IA+G NV Y +LI L+ F
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R +EM GI P I ++ GL +++D +SFL ++ G K N
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y E ++ ++ + +C P +L +G+I Y ++ + + M Q
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVL--CTGLINEYCKKGKVIEACSAYRSMVDQ 586
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGK 409
G+ A+ +++ F+ D + ++G +Y L+ G+ + G K
Sbjct: 587 GI-LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645
Query: 410 LDSVINEM 417
S+ +EM
Sbjct: 646 ASSIFDEM 653
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 23/300 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DIF +NS LI L ++ +A+ L ++ LK N + +SG +
Sbjct: 486 DIFCYNS-------LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF-----ISGYI 533
Query: 122 QNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ FA M G+ P+ + LI G V+ A S + MV + ++
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVD-QGILGDA 592
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
KTY ++G VD + + G + +V +Y LI+G K + ++E
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P++ I +L G C ++++ K L + G N ++ YC+ G
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG--KQGLSFKSA 357
+ E + + P+ ++ L RL+DVE ++ G K+G + +A
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVY-----TTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 43/265 (16%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M +KG Y +I K ++ A +F M+ +G+ PDS V+ +L+ C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 156 SGDVVTALSLF-----------------------------------EIMVSSEEY--KPN 178
DV A+++F +M S + KPN
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GN++A + + A V TY SL++G K + ++
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864
Query: 239 EMMSLGIIP-----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E ++ GI P S+ I + EG+ + + + F K + G K++ + + L+
Sbjct: 865 EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSG 924
Query: 294 YCELGRVDELEEQLETLTKCNQSPE 318
+ ++G ++ E+ +E + + P+
Sbjct: 925 FAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 108/300 (36%), Gaps = 46/300 (15%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+V AL L E M+ + P TYD I G + ++ + G S++ TY
Sbjct: 257 NVDGALKLKESMIC-KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-------------------------------- 245
LI G LK R+ D+ EM+S GI
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 246 ---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
IP ++EG C + + + L + I+ +VK C G +D
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-- 360
++ + P V++ ++ +I+ + + R D + M +QG+ A D+
Sbjct: 436 AYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGI----APDIFC 489
Query: 361 -EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + D FL + ++ K TY ++GY A D + EM+
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M++ G + + Y LI G+ + A+ VF M+ G +PD + +LI
Sbjct: 361 LDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAK 420
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+ +++ M ++ P++ TY I+ G++ A +K + I G N+
Sbjct: 421 AGFLNFAMEMYQRMQAAG-LSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLV 479
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I KAR++ + + Y +M + G P V+E L LD ++ +
Sbjct: 480 TYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEM 539
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V++ E + + P V S +R+ L
Sbjct: 540 KRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRL 599
Query: 334 SD 335
D
Sbjct: 600 PD 601
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K +N A+ ++ M+ G +PD ++ ++ SG + A ++F M
Sbjct: 481 YNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEM- 539
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ Y + + GNV+ +WY A + AG NV T SL+ L+
Sbjct: 540 KRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRL 599
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M++LG+ PS+
Sbjct: 600 PDAYNLLQSMLNLGLNPSL 618
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 1/209 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + K + FAM ++ M+A G+ PD+ ++ +I +G + A LF M+
Sbjct: 411 YCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMI 470
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY+ I+ + N K Y AGF + TY ++ +
Sbjct: 471 E-QGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYL 529
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + EM +P P+ +++ +++ + + +L G N L
Sbjct: 530 DEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSL 589
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ + + R+ + L+++ +P +
Sbjct: 590 LSAFLRVNRLPDAYNLLQSMLNLGLNPSL 618
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 54/264 (20%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + M +G PD++ ++ +I + V A LF+ M S P+ TY
Sbjct: 271 MAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEM-KSVGVNPDVYTYTIL 329
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG- 244
I F G ++ W+ + G S NV TY +L+H LKA+ + M+ G
Sbjct: 330 IDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGC 389
Query: 245 --------------------------------------------------IIPSIPILEK 254
I P++
Sbjct: 390 PPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGA 449
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++GLC K+ + L +L G + N + L+ +C++G++D +E ++KC
Sbjct: 450 LIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCG 509
Query: 315 QSPEVLLHFFSGIIRLYALSDRLD 338
P V H ++ +I RLD
Sbjct: 510 YLPTV--HTYTSLIDAMFKDRRLD 531
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F I P+ + +LI + VV A L + M+S+ +PN YDA I GF
Sbjct: 432 FEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNG-CEPNHIIYDALIDGFC 490
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+G +D + + G+ V TY SLI K R D + +M+ P++
Sbjct: 491 KVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVV 550
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+++GLC + + L + G N L+ + G+VD
Sbjct: 551 TYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVD 601
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 60/369 (16%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWR--LDKMLK-GNESCLDEYACLIALSGKVQNV 124
N +++ LI S KA L+ + R D+M G + + Y L+ K + +
Sbjct: 320 NPDVYTYTILIDSFC-----KAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQL 374
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE---------- 174
P A +F M G P++ +++L+ +G++ A ++ ++ + +
Sbjct: 375 PQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEG 434
Query: 175 -----YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
PN TY A I G V + A ++ G N Y++LI G K
Sbjct: 435 KHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGK 494
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D+ + M G +P++ +++ + R+LD L ++ N
Sbjct: 495 IDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTA 554
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ C +G + + L + + SP V+ + AL D L G+ GK
Sbjct: 555 MIDGLCRIGECQKALKLLSMMEEKGCSPNVVTY--------TALIDGL-------GKSGK 599
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
LS L LF+ TY L+ AGL +
Sbjct: 600 VDLS----------------------LQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDE 637
Query: 410 LDSVINEMK 418
S+++EMK
Sbjct: 638 AHSLLSEMK 646
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 92/230 (40%), Gaps = 15/230 (6%)
Query: 88 KAQLVLEWR--LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
KA V++ + LD ML G E Y LI KV + A VF M G P
Sbjct: 456 KAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVH 515
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+ SLI A + A+ + MV S PN TY A I G +G K +
Sbjct: 516 TYTSLIDAMFKDRRLDLAMKVLSQMVESS-CTPNVVTYTAMIDGLCRIGECQKALKLLSM 574
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G S NV TY +LI G K+ D + + +M + G P+ ++ CA
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGL 634
Query: 265 LDRVKSFLKFL--------LGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
LD S L + L G + + ++K + LG ++ELE
Sbjct: 635 LDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIA---SLGLLEELESH 681
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 104/276 (37%), Gaps = 16/276 (5%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVL 93
S V+++ L S L + S T + F + S +++AL+ L ++ Q+ +
Sbjct: 3 SRRVAATAALRSSLRRACSSSSHTADPELKDFGYRPSGATYNALVQVLATA----GQMDM 58
Query: 94 EWRLDKMLKGNESCLDEY--ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+R+ K + + C+D++ C K A+ +E + K D+ + +I
Sbjct: 59 GFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDAL---VMIEREDFKLDTVLCTQMIS 115
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
+ + A+S M PN TY ++GF + + + G +
Sbjct: 116 GLMEASLFDEAISFLHRM-RCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCN 174
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR---- 267
N + SL+H ARD+ + + M G P + +C +L
Sbjct: 175 PNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLL 234
Query: 268 --VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ + +L +N+ +C C +G+ D
Sbjct: 235 ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFD 270
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 33/187 (17%)
Query: 175 YKPNSKTYDAFISGFSSLGNVD--------------AMNKWYAANIAAG----------- 209
Y+P+ TY+A + ++ G +D M+K+ A
Sbjct: 36 YRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDAL 95
Query: 210 -------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
F ++ +I G ++A FD F M IP++ +L G +
Sbjct: 96 VMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKK 155
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLL 321
++L K + ++ G N ++ LV YC + L+ + C P V
Sbjct: 156 KQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAY 215
Query: 322 HFFSGII 328
+ F G I
Sbjct: 216 NIFIGSI 222
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 3/232 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V +F M+ Q P+ ++ LI A G V AL +F M S +PN
Sbjct: 136 KAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDM-KSRGCRPNI 194
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY + I G G+VD + + G Y SLIHG ++ D+ + + E
Sbjct: 195 FTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G+ P ++ GL + + + G ++ N+ L+ C+ R
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKR 314
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+DE E L + P+V + F+ ++ S R+ D +G M + G
Sbjct: 315 LDEAWEIFGELEEDGLVPDV--YTFNALMDGLCKSGRIHDAFILLGDMKRAG 364
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 132/331 (39%), Gaps = 15/331 (4%)
Query: 99 KMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
K ++G+ L Y LI K A+ V+ M G++PD+ FN L+ A +
Sbjct: 78 KRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKA 137
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
V + LFE M ++ PN TY I G V+ K + + G N+ T
Sbjct: 138 KRVDSVWKLFEEM-QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFT 196
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y S+I G K+ D +EEM S G++ + + ++ GL + D + +L
Sbjct: 197 YTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREML 256
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G + + LV GR E + + +V + ++ +I S R
Sbjct: 257 SKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV--NLYNVLIDTLCKSKR 314
Query: 337 LDDVEYSVGRMGKQGL-----SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
LD+ G + + GL +F + D +C R +D L D +
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMD---GLCKSGRI--HDAFILLGDMKRAGCTPDV 369
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
Y+ L+ G R++G + ++ EM+ Y
Sbjct: 370 TVYNTLIDGLRKSGRVEEAGQLLLEMQSLGY 400
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 1/226 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD +G + Y +I GK +V A +F M ++G+ V+NSLI S
Sbjct: 183 LDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRS 242
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G A LF M+ S+ +P+ T+ + + G G + + G +++V
Sbjct: 243 GRADAAAKLFREML-SKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNL 301
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y LI K++ D + E+ G++P + +++GLC ++ L +
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G + + L+ + GRV+E + L + P+V+ +
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTY 407
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C I + K + A +F M A G+ P + + SLI +V L + +
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELL-VEM 408
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + G S G++D IA+G NV Y +LI L+ F
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R +EM GI P I ++ GL +++D +SFL ++ G K N
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y E ++ ++ + +C P +L +G+I Y ++ + + M Q
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVL--CTGLINEYCKKGKVIEACSAYRSMVDQ 586
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGK 409
G+ A+ +++ F+ D + ++G +Y L+ G+ + G K
Sbjct: 587 GI-LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645
Query: 410 LDSVINEM 417
S+ +EM
Sbjct: 646 ASSIFDEM 653
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 23/300 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DIF +NS LI L ++ +A+ L ++ LK N + +SG +
Sbjct: 486 DIFCYNS-------LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF-----ISGYI 533
Query: 122 QNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ FA M G+ P+ + LI G V+ A S + MV + ++
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVD-QGILGDA 592
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
KTY ++G VD + + G + +V +Y LI+G K + ++E
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P++ I +L G C ++++ K L + G N ++ YC+ G
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG--KQGLSFKSA 357
+ E + + P+ ++ L RL+DVE ++ G K+G + +A
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVY-----TTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 43/265 (16%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M +KG Y +I K ++ A +F M+ +G+ PDS V+ +L+ C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 156 SGDVVTALSLF-----------------------------------EIMVSSEEY--KPN 178
DV A+++F +M S + KPN
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GN++A + + A V TY SL++G K + ++
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864
Query: 239 EMMSLGIIP-----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E ++ GI P S+ I + EG+ + + + F K + G K++ + + L+
Sbjct: 865 EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSG 924
Query: 294 YCELGRVDELEEQLETLTKCNQSPE 318
+ ++G ++ E+ +E + + P+
Sbjct: 925 FAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 108/300 (36%), Gaps = 46/300 (15%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+V AL L E M+ + P TYD I G + ++ + G S++ TY
Sbjct: 257 NVDGALKLKESMIC-KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-------------------------------- 245
LI G LK R+ D+ EM+S GI
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 246 ---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
IP ++EG C + + + L + I+ +VK C G +D
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-- 360
++ + P V++ ++ +I+ + + R D + M +QG+ A D+
Sbjct: 436 AYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGI----APDIFC 489
Query: 361 -EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + D FL + ++ K TY ++GY A D + EM+
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A L +E + KG + + Y LI KV ++ A + M +G+KPD +
Sbjct: 345 RADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYT 404
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI C GD+ +AL + + MV E + ++ + A ISGF G V + +
Sbjct: 405 MLIDGCCKEGDLESALEIRKEMVK-EGIELDNVAFTALISGFCREGQVIEAERTLREMLE 463
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
AG + TY +IHG K D + + +EM G +P + +L GLC + ++
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523
Query: 268 VKSFLKFLLGGG 279
L +L G
Sbjct: 524 ANMLLDAMLNLG 535
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 4/182 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F + +G++P FN+LI SG++ L M+ + + P+ TY I
Sbjct: 244 AQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVF-PDVFTYSVLI 302
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G +D NK + G N T+ +LI+G D Y++M+ G+
Sbjct: 303 NGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVK 362
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC L K + + G K ++ L+ C+ G +LE
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG---DLESA 419
Query: 307 LE 308
LE
Sbjct: 420 LE 421
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 3/216 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSA 144
K L +RL + + N D + + ++G K + A +F M +G+ P+
Sbjct: 272 KSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV 331
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
F +LI +G + +++ M+ + KP+ TY+ I+G +G++ K
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLR-KGVKPDVITYNTLINGLCKVGDLREAKKLVIE 390
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G + TY LI G K D +S +EM+ GI ++ G C +
Sbjct: 391 MTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + L+ +L G K ++ ++ +C+ G V
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 1/178 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD ++ LI G + A LF + + PN T+ I+G G D +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLF-LEMCDRGLVPNDVTFTTLINGHCVTGRADLGME 351
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
Y + G +V TY +LI+G K D + EM G+ P +++G C
Sbjct: 352 IYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCC 411
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L+ K ++ G +++ L+ +C G+V E E L + + P+
Sbjct: 412 KEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G PD FN L+ LC + L + +P +++ I+G+ GN+D
Sbjct: 220 GYPPDVCKFNVLMHR-LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQ 278
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + +V TY LI+G K D ++ + EM G++P+ ++
Sbjct: 279 GFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLIN 338
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C + D + +L G K + L+ C++G + E ++ + +T+ P
Sbjct: 339 GHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 318 E 318
+
Sbjct: 399 D 399
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A+ + M +GI+ D+ F +LI G V+ A M+
Sbjct: 403 YTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREML 462
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ TY I GF G+V K G V TY L++G K
Sbjct: 463 EAG-IKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521
Query: 231 DSVDRFYEEMMSLGIIP 247
+ + + M++LG++P
Sbjct: 522 KNANMLLDAMLNLGVVP 538
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
LE R + + +G E LD A +SG + V A M GIKPD A + +I
Sbjct: 420 LEIRKEMVKEGIE--LDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
GDV T L + M + + P TY+ ++G G + N A + G
Sbjct: 478 HGFCKKGDVKTGFKLLKEM-QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGV 536
Query: 211 SVNVQTYESLIHGSLKA 227
+ TY L+ +L+A
Sbjct: 537 VPDDITYNILLERTLQA 553
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/243 (17%), Positives = 91/243 (37%), Gaps = 2/243 (0%)
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y P+ ++ + ++ + G V ++ +LI+G K+ + D
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
R MM + P + ++ GLC +LD + G N+ L+ +
Sbjct: 281 RLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGH 340
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
C GR D E + + + P+V+ ++ +I L + + V M ++GL
Sbjct: 341 CVTGRADLGMEIYQQMLRKGVKPDVIT--YNTLINGLCKVGDLREAKKLVIEMTQRGLKP 398
Query: 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
++ L++ + +K +L + L++G+ R G + + +
Sbjct: 399 DKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTL 458
Query: 415 NEM 417
EM
Sbjct: 459 REM 461
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F SM ++G +PD +N LI + V A+ L+ M+ + +PN TYD+ +
Sbjct: 314 ARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK-RPNVITYDSLL 372
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G VD K ++ A G + N TY + G K + + E+ S
Sbjct: 373 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 432
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I L +++GLC KL+ + L G + N ++ +C G+VD+
Sbjct: 433 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 492
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
++ + +P+++ ++ ++R + S++L++V + RM ++ +S
Sbjct: 493 IQKMEANGCTPDIIT--YNTLMRGFYESNKLEEVVQLLHRMAQKDVS 537
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GI PD +NSLI GD+ +A LF + + S+ +P+ +Y+ I+G+S
Sbjct: 286 MIESGIVPDLVTYNSLIEGFCMVGDLNSARELF-VSMPSKGCEPDVISYNVLINGYSKTL 344
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ K Y + G NV TY+SL+ G A D + + M + GI +
Sbjct: 345 KVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 404
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
L+GLC L L +K+ L+ C+ G+++ E E L+
Sbjct: 405 IFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNE 464
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
P V+ ++ +I + ++D + +M G
Sbjct: 465 GHEPNVVT--YTIMIHGFCREGQVDKANVLIQKMEANG 500
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG++PD FN LI G V+ A L +M+ S P+ TY++ I GF +G
Sbjct: 251 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-GIVPDLVTYNSLIEGFCMVG 309
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++++ + + + + G +V +Y LI+G K + + Y EM+ +G P++ +
Sbjct: 310 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 369
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+L+G+ K+D K + G N
Sbjct: 370 SLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 399
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 1/219 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI K V AM ++ M G +P+ ++SL+ +G V
Sbjct: 324 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD 383
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF +M + NS TY F+ G + K + ++ F + ++ LI
Sbjct: 384 AKKLFSVM-KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLI 442
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G KA ++ +E++ + G P++ ++ G C ++D+ ++ + G
Sbjct: 443 DGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCT 502
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ L++ + E +++E+ + L + + + SP+ +
Sbjct: 503 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAI 541
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/390 (18%), Positives = 154/390 (39%), Gaps = 20/390 (5%)
Query: 32 TNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQ 90
T + S+SS N L+S L ++ SQ+ + + + + +S + + + L+ L + + +
Sbjct: 64 TPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREG 123
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
+ + +G + Y LI + A +F M+ G PD + +LI
Sbjct: 124 FAAFAGI--LRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLI 181
Query: 151 CACLCSGDVVTALSLFEIMVSS-EEY----KPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
+G++ AL L + M++ Y KPN TY+ + G +G D + +
Sbjct: 182 KGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM 241
Query: 206 ----------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ G ++ T+ LI K + M+ GI+P + +
Sbjct: 242 KTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 301
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+EG C L+ + + G + + L+ Y + +V+E + + +
Sbjct: 302 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 361
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P V+ + +++ L+ ++DD + M G++ S + ++
Sbjct: 362 RPNVIT--YDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEA 419
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+ LF + ++KL + L+ G +AG
Sbjct: 420 MKLFTELKSSNFKLEIENLNCLIDGLCKAG 449
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 142/331 (42%), Gaps = 11/331 (3%)
Query: 97 LDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+ KM+K G + + Y+ LI K+++ A VF G+KPD ++N++I A
Sbjct: 481 ISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFC 540
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G++ A+ + M E ++P ++T+ I GF+ G + + + +G V
Sbjct: 541 GMGNMDRAICMVRQM-QKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTV 599
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI G ++ R +EM G+ P+ +++G + ++ +
Sbjct: 600 HTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTV 659
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
L G +I+ + L+K C+ GR+ + +TK + + + F I + +
Sbjct: 660 LRNEGLEIDVYTYEALLKSCCKSGRM----QSALAVTKEMSAKNIPRNTFVYNILIDGWA 715
Query: 335 DRLDDVEYS--VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRR 391
R D E + + +M K+GL I + + + + ++ S K
Sbjct: 716 RRGDVWEAADLMQQMRKEGL-LPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNL 774
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
TY L+ G+ RA + K S EMK A +
Sbjct: 775 KTYTTLINGWARASMPEKALSCFEEMKLAGF 805
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EY ++ G+ ++ A F SM A+GI+P S V++SLI A D+ AL M
Sbjct: 286 EYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKM 345
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + TY + GF+ +GN DA + W+ S+N Y +I+ + +
Sbjct: 346 -KEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICN 404
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
D + EM GI I I +++G
Sbjct: 405 MDRAEALVREMEEQGIDAPIDIYHTMMDG 433
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV V A+ + M+ GIK + ++ LI L D A S+FE
Sbjct: 462 YGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDF- 520
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + KP+ Y+ I+ F +GN+D +T+ +IHG +A +
Sbjct: 521 TKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEM 580
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +R++ + + L + G NE+ L
Sbjct: 581 RRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTL 640
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
++ Y LG ++ + L N+ E+ ++ + +++ S R+
Sbjct: 641 MQGYASLGDTEKAFQYFTVLR--NEGLEIDVYTYEALLKSCCKSGRM 685
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I ++ V+N LI GDV A L + M E P
Sbjct: 682 SGRMQS---ALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQM-RKEGLLP 737
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FI+ G++ + A+G N++TY +LI+G +A + +
Sbjct: 738 DIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCF 797
Query: 238 EEMMSLGIIPSIPILEKVLEGLCAR 262
EEM G P + ++ L +R
Sbjct: 798 EEMKLAGFKPDKAVYHCLVTSLLSR 822
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 105/256 (41%), Gaps = 5/256 (1%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F +++++I + + A VL+ D + KG + Y LI K +
Sbjct: 290 GFEPDDLTYNSIIDGYCKKGMVQDANRVLK---DAVFKGFKPDEFTYCSLINGFCKDGDP 346
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM VF +G++P ++N+LI G ++ AL L M + PN TY+
Sbjct: 347 DRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCL-PNIWTYNL 405
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G +G V + IA G ++ TY +LI G K DS M S G
Sbjct: 406 VINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQG 465
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P + +L GLC K + V K + G N +V C+ +V+E
Sbjct: 466 MTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAV 525
Query: 305 EQLETLTKCNQSPEVL 320
+ L + P+V+
Sbjct: 526 DLLGEMKSKGLKPDVV 541
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 2/208 (0%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ L+ L + K++ V+E KG + Y ++ K + V A+ +
Sbjct: 471 ITYNTLLNGLCKAG--KSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLL 528
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M+++G+KPD F +L GD+ A LF M + + TY+ +S FS
Sbjct: 529 GEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSE 588
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
N++ K ++ +G + TY +I G K + +F E M IPS+
Sbjct: 589 QLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTT 648
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+VL LC + K+ + +L G
Sbjct: 649 FGRVLNCLCVKDKVHEAVGIIHLMLQKG 676
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 7/238 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQN 123
F +F++ +LI + P +A V + D + KG + Y LI LS +
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFK---DGLGKGLRPSIVLYNTLIKGLSQQGLI 381
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+P A+ + M G P+ +N L+ LC V+ S ++ P+ TY+
Sbjct: 382 LP-ALQLMNEMAENGCLPNIWTYN-LVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYN 439
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G+ +D+ + + G + +V TY +L++G KA + V ++ M
Sbjct: 440 TLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK 499
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P+I +++ LC +K++ L + G K + L +C++G +D
Sbjct: 500 GCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDID 557
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 12/226 (5%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY---------KPNSKTYDAFIS 187
+G+ P+ FN + LC + +V +EEY +P+ TY++ I
Sbjct: 245 RGVCPNLFTFNIFVQG-LCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIID 303
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+ G V N+ + GF + TY SLI+G K D D +++ + G+ P
Sbjct: 304 GYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRP 363
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
SI + +++GL + + + + G N ++ C++G V + +
Sbjct: 364 SIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLV 423
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P++ ++ +I Y +LD V RM QG++
Sbjct: 424 DDAIAKGCPPDIFT--YNTLIDGYCKQLKLDSATEMVNRMWSQGMT 467
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 6/234 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G VQ+ A V +G KPD + SLI GD A+++F+ + + +P+
Sbjct: 309 GMVQD---ANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLG-KGLRPS 364
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y+ I G S G + + G N+ TY +I+G K +
Sbjct: 365 IVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVD 424
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ ++ G P I +++G C + KLD + + G + L+ C+ G
Sbjct: 425 DAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAG 484
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ +E+ E + + + +P ++ ++ I+ + ++++ +G M +GL
Sbjct: 485 KSEEVMEIFKAMEEKGCTPNIIT--YNIIVDSLCKAKKVNEAVDLLGEMKSKGL 536
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 10/191 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V+ M +G++ D + I + + AL L M N+ Y +
Sbjct: 130 AHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNM-PELGCDSNAVAYCTVV 188
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G D + + +A +V + L+H K +R +++ G+
Sbjct: 189 AGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC 248
Query: 247 PSIPILEKVLEGLCARRKLDR---------VKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
P++ ++GLC LDR + +L+ ++ GG++ ++ ++ YC+
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308
Query: 298 GRVDELEEQLE 308
G V + L+
Sbjct: 309 GMVQDANRVLK 319
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 3/241 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+A L+A A+ F+ M+ +P + V+N+++ A + SG ++ AL+L+ MV
Sbjct: 140 FAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMV 199
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ PN TY+ + G G K + + G NV+ Y L+ A
Sbjct: 200 AAG-CAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKI 258
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + M G +P L GLC +++ L L GG+ + L
Sbjct: 259 DEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCL 318
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + R DE +T+ + N SP+V+L ++ +IR A + R++D + M K+
Sbjct: 319 IDGLFQARRFDEGFGYYKTMLERNISPDVVL--YTIMIRGCAEAGRIEDALSFLDVMKKK 376
Query: 351 G 351
G
Sbjct: 377 G 377
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
A G+ S+ F +L+ A +G A+ F M + +P + Y+ + G
Sbjct: 129 RAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRM-DEFQSRPTAFVYNTILKALVDSGV 187
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+ Y +AAG + N TY L+ G K + ++EM+ GI+P++ I
Sbjct: 188 ILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTV 247
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+L LC K+D L + G +E + C++GRV+E ++L L
Sbjct: 248 LLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVML 303
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 55/309 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M +GI P+ ++ L+ + +G + A+ L M + P+ TY+AF+
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSM-KDKGCLPDEVTYNAFL 284
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG +G V+ + GF++ ++ Y LI G +AR FD +Y+ M+ I
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 247 PSI-----------------------PILEK------------VLEGLCARRKLDRVKSF 271
P + +++K VL+ LC L+R +
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+L ++ ++ C+ G VDE + + + + P V+ +
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTY--------- 455
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
+ L D Y GR+ + + F E + + RL L + + S LR+
Sbjct: 456 ---NALIDGFYREGRLEEARMLFHKMEMGN-------NPSLFLRLTLGANQVCDSESLRK 505
Query: 392 ATYDFLVAG 400
+D +G
Sbjct: 506 LVHDMCQSG 514
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM------------VSSEE 174
AM +F M G P +N+LI G + A LF M
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+S++ + G V K + I +G +V TY +LI+G KAR+ D
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGG 278
R ++E+ GI P +++GL A R+ D + F L G
Sbjct: 556 RLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSG 600
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
DS L+ SG V+ A L ++ S P+ TY+ I+G N+D +
Sbjct: 499 DSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG-VVPDVVTYNTLINGLCKARNLDGAVRL 557
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ G S + TY +LI G L+A + ++ ++ G PS+ I ++ LC
Sbjct: 558 FKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCR 617
Query: 262 RRKLDR 267
+KL +
Sbjct: 618 MKKLSQ 623
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA---- 197
DS +IC G V A+ +F+ M P TY+A I GF G ++
Sbjct: 416 DSTTQTIMICGLCKRGLVDEAMQIFDEM-GEHGCDPTVMTYNALIDGFYREGRLEEARML 474
Query: 198 MNKWYAAN---------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+K N + A + ++ L+H ++ + ++ G++P
Sbjct: 475 FHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ ++ GLC R LD K L G +E L+ R ++ +
Sbjct: 535 VVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQ 594
Query: 309 TLTKCNQSPEVLLHFFSGIIR 329
+ + SP L ++ ++R
Sbjct: 595 NILQSGSSPS--LSIYNSMMR 613
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 5/222 (2%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
GN L Y LI K ++ A VF M+ +G+ PD +N+L+ G
Sbjct: 505 GNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYG---YGKTHQL 561
Query: 163 LSLFEIM--VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
+FE++ + S P+ TY+ I G VD N+ + I GF + + +
Sbjct: 562 NKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDV 621
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I G K DF + M L + P + +L G C +++++ LL G
Sbjct: 622 IGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGL 681
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K + + L+ YC +G +++ E + + + P H
Sbjct: 682 KPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 723
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ GK + + M + GI PD A +N LI + + G V A + ++
Sbjct: 548 YNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELI 607
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKW-YAANIAAGFSVNVQTYESLIHGSLKAR 228
+ P++ + I G S G+ +A W Y A++ +V T +L+HG +A+
Sbjct: 608 R-RGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRV--KPDVVTCSALLHGYCRAQ 664
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ +++++ G+ P + + ++ G C+ +++ + ++ G NE+
Sbjct: 665 RMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHH 724
Query: 289 KLV 291
LV
Sbjct: 725 ALV 727
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 1/182 (0%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
++P+ V++S + +GD++ A ++F+ + P+ Y I G+ +LG D
Sbjct: 436 LRPNIFVYSSFLSNICSTGDMLRASTIFQ-EIFELGLLPDCYCYTTMIDGYCTLGRTDKA 494
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+++ A + +G ++ TY LI K + + M + G+ P + ++ G
Sbjct: 495 FQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYG 554
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+L++V + + G + L+ G VDE E + L + P
Sbjct: 555 YGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPS 614
Query: 319 VL 320
L
Sbjct: 615 AL 616
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 35/356 (9%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ KG + L Y ++ K + A ++ ME ++P ++N++I
Sbjct: 4 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ AL+LF+ M ++ +PN TY + IS + G ++ + I + +V
Sbjct: 64 YKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ Y+EM+ I PSI ++ G C +LD K +F+
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK----------------------C 313
+ + L+K +C+ RV+E E +++ C
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242
Query: 314 NQSPEVLLHFFS-GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSY--- 367
+ + E+ S G+ + L D G++ K + F+ + +E I +Y
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 302
Query: 368 --FRCAA---YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
C A D DLF + K Y+ +++G+ R G + D++ EMK
Sbjct: 303 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 274 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 329
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 330 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 389
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 390 KEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 424
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 141 PDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P S F +++ C GD+ A S+F+ ++ +P++ +Y+ ++G+ LG +D
Sbjct: 114 PASLYFFNILMHRFCKDGDIRVAQSVFD-AITKWGLRPSAVSYNTLMNGYIRLGVLDEGF 172
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +A +A+G +V TY LI+G K D D ++EM+ G++P+ +++G
Sbjct: 173 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGH 232
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE- 318
C ++D K +L + L+ C+ G + + + ++ +++ P+
Sbjct: 233 CKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDK 292
Query: 319 --------------VLLHFFSGIIRLYALSDRLDDVEYS 343
VL+ F RL + RLDDV Y+
Sbjct: 293 ITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYT 331
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
++M A G++PD ++ LI + A LF+ M+ + PN T+ I G
Sbjct: 176 SAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLV-KGLVPNGVTFTTLIDGHCK 234
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD + Y ++ ++ TY +LI+G K D ++M G+ P
Sbjct: 235 NGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKIT 294
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C L K L+ ++++ + L+ C+ GR + E+ L +
Sbjct: 295 YTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREML 354
Query: 312 KCNQSPE 318
+P+
Sbjct: 355 SVGLNPD 361
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 3/164 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K V AM ++ M +Q + PD +N+LI GD+ A L + M
Sbjct: 225 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM- 283
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARD 229
S + KP+ TY I G G + + + I ++ Y +LI G + R
Sbjct: 284 SRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRS 343
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
D+ ++ EM+S+G+ P ++ C + + + LK
Sbjct: 344 VDA-EKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLK 386
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A + M +G+KPD + +LI C G +V+A + ++
Sbjct: 260 YNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLI 319
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + Y A ISG G K ++ G + + TY +I+ K D
Sbjct: 320 Q-ENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDV 378
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ +EM G +PS+ ++ G
Sbjct: 379 WKGSKLLKEMQRDGHVPSVVTYNVLMNG 406
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 9/216 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + A +F M +G+ P+ F +LI +G V A+ +++ M+
Sbjct: 190 YSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 249
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK---- 226
S + P+ TY+ I G G++ + G + TY +LI G K
Sbjct: 250 S-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVL 308
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
F+ R +E + L + + ++ GLC + + L+ +L G +
Sbjct: 309 VSAFEHRKRLIQENIRLDDV----VYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGT 364
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ +C+ G V + + L+ + + P V+ +
Sbjct: 365 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 400
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 6/218 (2%)
Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-A 162
N+ C Y LI KV A+ + ++ + ++P+ ++N++I + +C +V A
Sbjct: 160 NKVC---YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDS-MCKVKLVNEA 215
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L+ MVS + P+ TY A ISGF LG ++ + I+ + +V T+ L+
Sbjct: 216 FDLYSEMVS-KGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVD 274
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K MM GI P + +++G C +++++ KS + GG
Sbjct: 275 GFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA 334
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
N ++ +C++ +VDE + + N P+V+
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVV 372
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLD-KMLKGNESCLDEYACLIALS 118
D V F+ ++ + LI L A L L R+D K+++ N + Y +I
Sbjct: 150 DKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPN---VVMYNTIIDSM 206
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
KV+ V A +++ M ++GI PD +++LI G + A+ LF M+S EE P+
Sbjct: 207 CKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMIS-EEINPD 265
Query: 179 SKTYDAFISGFSSLG------NVDAM--------------------------NK---WYA 203
T+ + GF G NV AM NK +
Sbjct: 266 VYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFN 325
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G + NVQ+Y +I+G K + D ++EM IIP + +++GLC
Sbjct: 326 TMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSG 385
Query: 264 KL 265
K+
Sbjct: 386 KI 387
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 14/267 (5%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D Y I + G K V A +V M QGIKPD + SL+ V A S+F
Sbjct: 265 DVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIF 324
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMN---KWYAANIAAGFSVNVQTYESLIH 222
M N ++Y+ I+GF + VD AMN + + NI +V TY SLI
Sbjct: 325 NTMAQGG-VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIP----DVVTYNSLID 379
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G K+ + +EM G+ +L+ LC ++D+ + L + G +
Sbjct: 380 GLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQP 439
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ L+ C+ GR+ + + E L + + ++ ++ +I+ + +D D
Sbjct: 440 DMYTYTILIDGLCKGGRLKDAQNIFEDLLV--KGYNITVYTYTVMIQGFCDNDLFDKALA 497
Query: 343 SVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ +M G +A+ E++I S F
Sbjct: 498 LLSKMEDNG-CIPNAKTYEIIILSLFE 523
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 158/397 (39%), Gaps = 47/397 (11%)
Query: 61 SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSG 119
SV F F + +F + S + + L +++L N + + E+ ++
Sbjct: 8 SVSHFQFPNPKFIISTSLYSQLHHHHQDDEHSLVSSFNRILNINPTPPIFEFGKILGSLV 67
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ A+ + ME GI D FN LI G + S+F ++ + Y+PN+
Sbjct: 68 KINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILK-KGYEPNA 126
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD---------- 229
T I G G + ++ +A GF +N Y +LI+G K
Sbjct: 127 ITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRR 186
Query: 230 ----------------FDSVDR---------FYEEMMSLGIIPSIPILEKVLEGLCARRK 264
DS+ + Y EM+S GI P + ++ G C K
Sbjct: 187 VDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGK 246
Query: 265 L-DRVKSFLKFLLGGGWKINENMA--QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L D + F K + +IN ++ LV +C+ GRV E + L + K P+V+
Sbjct: 247 LNDAIGLFNKMI---SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVT 303
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFL 380
+ ++ Y L +++ + M + G++ + + ++I + + D ++LF
Sbjct: 304 --YCSLMDGYCLVKQVNKAKSIFNTMAQGGVT-ANVQSYNIMINGFCKIKKVDEAMNLFK 360
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + TY+ L+ G ++G +++EM
Sbjct: 361 EMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEM 397
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 18/186 (9%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+ +A+ + M +G+ D +NS++ A + V A++L M E +P
Sbjct: 384 SGKIS---YALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM-KDEGIQP 439
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY I G G + + + G+++ V TY +I G FD
Sbjct: 440 DMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALL 499
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKINENMAQKLVKC 293
+M G IP+ E ++ L + + D + L+ ++ GWK K
Sbjct: 500 SKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFGWK----------KA 549
Query: 294 YCELGR 299
YC R
Sbjct: 550 YCLFTR 555
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 1/187 (0%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
++M A G++PD ++ LI V A LF M+ PN T+ I
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLD-RGLVPNGVTFTTLIDVHCK 253
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD+ + Y ++ GFS ++ TY +LI+G K D V +EM G+ P
Sbjct: 254 NGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKIT 313
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C L+ F K ++ +++ LV C+ GR D+ E+ +
Sbjct: 314 YTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREML 373
Query: 312 KCNQSPE 318
P+
Sbjct: 374 SVGLKPD 380
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF ++ G++P FN+L+ + GD+ L M +S +P+ TY I
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS-GVQPDVYTYSVLI 213
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G VD N+ + + G N T+ +LI K DS Y++M+S G
Sbjct: 214 NGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFS 273
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC + L +V++ + + G K ++ L+ C+ G +LE
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEG---DLETA 330
Query: 307 LE 308
E
Sbjct: 331 FE 332
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K V A +F M +G+ P+ F +LI +G V +A+ +++ M+
Sbjct: 209 YSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQML 268
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + P+ TY+ I G G++ + G + TY +LI G K D
Sbjct: 269 S-QGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDL 327
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ F + M+ I ++ GLC + D + + +L G K + +
Sbjct: 328 ETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMI 387
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ +C+ G V L+ + + P V+
Sbjct: 388 INEFCKKGDVRTASRLLKEMQRDGHVPCVV 417
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 17/219 (7%)
Query: 141 PDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P S F +++ C G++ A S+F+ ++ +P+ +++ ++G+ LG++D
Sbjct: 133 PASLYFFNIVMHRFCKEGEMRRAQSVFD-AITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +A A+G +V TY LI+G K D + + EM+ G++P+ +++
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVH 251
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C +D K +L G+ + L+ C+ G + ++ ++ ++ P+
Sbjct: 252 CKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDK 311
Query: 320 LLHF---------------FSGIIRLYALSDRLDDVEYS 343
+ + F R+ S RLD+V Y+
Sbjct: 312 ITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYT 350
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 704 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 759
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 760 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 819
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++GI P + +L L +R + V + K ++ G ++ A
Sbjct: 820 EEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 879
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
KC C++ EL E L+ + S H F
Sbjct: 880 KCLCKIEASGGELTETLQKTFPPDWSSHHHHHGF 913
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+ ALS M
Sbjct: 311 EFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 370
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GFS G+ +A + W+ ++N Y +I+ + +
Sbjct: 371 -KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + EM GI I I +++G
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMDG 458
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + N+ A + ME +GI A++++++ D L +F+ +
Sbjct: 417 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLK 476
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P TY I+ ++ +G + + G N++TY +I+G +K +D+
Sbjct: 477 ECG-FTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 535
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+M+ G+ P + + ++ C +DR +K + + +
Sbjct: 536 ANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPI 595
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ Y + G + E + + +C P V H F+G+I
Sbjct: 596 IHGYAKSGDMRRSLEVFDMMRRCGCVPTV--HTFNGLI 631
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 141/328 (42%), Gaps = 28/328 (8%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + L Y+ +I K+++ A VF M +G+KPD ++N++I A G++
Sbjct: 513 EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDR 572
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ + M ++P ++T+ I G++ G++ + + G V T+ LI
Sbjct: 573 AIQTVKEM-QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI 631
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G ++ R + +EM G+ + K+++G + + + L G
Sbjct: 632 NGLVEKRQAVEI---LDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLD 688
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
++ + L+K C+ GR+ + +TK + + + F I + + R D E
Sbjct: 689 VDIFTYEALLKACCKSGRM----QSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE 744
Query: 342 YS--VGRMGKQGL--------SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLR 390
+ + +M K+G+ SF SA CS + +R ++ ++ K
Sbjct: 745 AADLIQQMKKEGVKPDIHTYTSFISA-------CS--KAGDMNRATQTIEEMEALGVKPN 795
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY L+ G+ RA L K S EMK
Sbjct: 796 IKTYTTLIKGWARASLPEKALSCYEEMK 823
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM++ + + G KPD ++N+++ A+ +++ M E +P+ T
Sbjct: 244 KNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM-KEEGVEPDQIT 302
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I G S G V+ + + AG+ + TY SL++G + + EEM
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEME 362
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P+ +L GLC R +D+ + + G K+ N LV+ + G+V
Sbjct: 363 ARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVA 422
Query: 302 ELEE 305
E E
Sbjct: 423 EAYE 426
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A +M G +PD+A + SL+ G+ + ALSL E M
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEM- 361
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ PN TY+ + G +D + Y ++G + Y +L+ +K+
Sbjct: 362 EARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 4/199 (2%)
Query: 105 ESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+ CL + Y L+ S ++ A F M ++G++PD +N+ I A L G +
Sbjct: 442 QGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAK 501
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A L E+M+ E ++ TY+ I G GN++ + G + TY LI
Sbjct: 502 AFRLREVMML-EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLI 560
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
H + +F+++M+S G+ PS + C R L + + +L G +
Sbjct: 561 HAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVE 620
Query: 282 INENMAQKLVKCYCELGRV 300
NE L+ C GR
Sbjct: 621 PNEITYNVLIHALCRTGRT 639
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 69 SSQFSWDALITSLQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
+S F+++ LIT L + KKA + +L+ +G + Y +I + V A
Sbjct: 306 ASSFTYNPLITGLLAKGFVKKAD---DLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAA 362
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
F M A G++PD +NSL+ +G + AL LF + + P TY+ I
Sbjct: 363 QVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAG-LAPTVLTYNILID 421
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+ LG+++ + + G +V TY L+ GS A F++EM+S G+ P
Sbjct: 422 GYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQP 481
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
ML+G S Y LI K N+ A + M G++PD + LI A G +
Sbjct: 510 MLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLL 569
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A F+ M+S + P++ TY FI + GN+ + W+ + G N TY
Sbjct: 570 REARKFFKDMIS-DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 628
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
LIH + R + EM+ G++P+ +++G C
Sbjct: 629 LIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNC 669
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +GI P +N++I L SG V A F + + + +P+ TY++ ++G+ G
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKF-VEMRAMGLQPDVITYNSLLNGYCKAG 392
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ + AG + V TY LI G + D + R EEM+ G +P +
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYT 452
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+++G L + F +L G +
Sbjct: 453 ILMKGSHNACSLAMAREFFDEMLSKGLQ 480
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 2/184 (1%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
G P+ N +I GD+ A + E M S+ K +S TY+ I+G + G V
Sbjct: 267 GSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSK--KASSFTYNPLITGLLAKGFV 324
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ G V TY ++IHG L++ ++ + EM ++G+ P + +
Sbjct: 325 KKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSL 384
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L G C L L G L+ YC LG ++E E + +
Sbjct: 385 LNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGC 444
Query: 316 SPEV 319
P+V
Sbjct: 445 LPDV 448
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + + A F M + G+ P + + I A G++ +A F M+
Sbjct: 556 YTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKML 615
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN TY+ I G + + + G N TY LI G+ K ++
Sbjct: 616 E-EGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNW 674
Query: 231 DSVDRFYEEMMSLGIIP 247
+ RFY EM GI P
Sbjct: 675 EDAMRFYFEMHQNGIHP 691
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 101/268 (37%), Gaps = 8/268 (2%)
Query: 36 SVSSSNPLISRLLQ---VPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLV 92
+V + N +I LLQ V +Q+K + ++++L+ + K L+
Sbjct: 342 TVVTYNAMIHGLLQSGQVEAAQVKFV--EMRAMGLQPDVITYNSLLNGYCKAGSLKEALL 399
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L L G + Y LI ++ ++ A + M QG PD + L+
Sbjct: 400 LFGDLRH--AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKG 457
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ + A F+ M+S + +P+ Y+ I +LG + + + G S
Sbjct: 458 SHNACSLAMAREFFDEMLS-KGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISS 516
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ TY LI G K + + +M+ G+ P ++ C R L + F
Sbjct: 517 DTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFF 576
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRV 300
K ++ G + + YC G +
Sbjct: 577 KDMISDGLAPSAVTYTVFIHAYCRRGNL 604
>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Glycine max]
Length = 626
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 3/212 (1%)
Query: 103 GNESCLDEYACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
GN C D C + + G ++ A++ ++ IK +++ LI A G
Sbjct: 381 GNGICPDSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPF 440
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A S F + +S + Y P TY+ + NV+ + + +N+ Y ++
Sbjct: 441 AARS-FLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAV 499
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I + + EEM+S GI+P + I ++ G C K+D+ S LKF
Sbjct: 500 ISCLCRVNRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQ 559
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ +VK +C++G V EL E + L K
Sbjct: 560 VYDTESYNAVVKVFCDVGNVAELLELQDKLLK 591
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+ A+F+ LI A + +G V L+ F + + + PN + +SG S +
Sbjct: 177 NPAIFDMLIKAYVKAGMVEKGLATFRRNIEAC-FIPNVIACNCLLSGLSRFNYIGQCWAV 235
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
Y G N T+ + H K D D V RF ++M G P + ++ C
Sbjct: 236 YEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCK 295
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+R+L+ K + G N L+ CE G+V E + + P+V+
Sbjct: 296 KRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVV 354
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME +G +PD +N+L+ + + A L++IM PN T+ ++G G
Sbjct: 274 MEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYI-RGVMPNLITHTVLMNGLCEEG 332
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V ++ + + G +V +Y +L+ G + EM+ GI P
Sbjct: 333 KVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCR 392
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++EG KL + + L KI E++ L+ C GR
Sbjct: 393 LIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGR 438
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 6/211 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL--DEYACLIALSG--KVQNVPFAM 128
+W+ I + + KA +V E L + E+C + AC LSG + +
Sbjct: 175 NWNPAIFDMLIKAYVKAGMV-EKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCW 233
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
V+ M GI ++ FN ++ LC ++ F + E ++P+ TY+ ++
Sbjct: 234 AVYEEMGRLGIHRNAYTFN-IMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNS 292
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ ++ Y G N+ T+ L++G + + + +M+ GI P
Sbjct: 293 YCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPD 352
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ ++ G C K+ +S L ++G G
Sbjct: 353 VVSYNTLVSGYCREGKMQMCRSLLHEMIGNG 383
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 12/205 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV+ A +F M +GI PD +N+L+ G + SL M+ + P+
Sbjct: 332 GKVKE---AHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNG-ICPD 387
Query: 179 SKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQT--YESLIHG-SLKARDFDSVD 234
S T + GF+ G + A+N F + + Y+ LI ++ R F +
Sbjct: 388 SVTCRLIVEGFARDGKLLSALNTVVEL---KRFRIKIPEDLYDYLIVALCIEGRPF-AAR 443
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
F + G +P I K++E LC ++ ++ +N + ++ C
Sbjct: 444 SFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCL 503
Query: 295 CELGRVDELEEQLETLTKCNQSPEV 319
C + R E E LE + P+V
Sbjct: 504 CRVNRTLEAEGLLEEMVSSGILPDV 528
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 164 SLFEIMVS-SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
++E +V +E+ N +D I + G V+ + NI A F NV L+
Sbjct: 162 GIYENLVECTEDCNWNPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLS 221
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + YEEM LGI + + LC D+V FL + G++
Sbjct: 222 GLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEP 281
Query: 283 NENMAQKLVKCYCELGRVDE 302
+ LV YC+ R+++
Sbjct: 282 DLVTYNTLVNSYCKKRRLED 301
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 3/203 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+A GI P F SLI LC + AL +F M+ + KP++ Y I +
Sbjct: 5 MKAAGITPTIVTFGSLIRK-LCELNFTNKALQIFHQMIDMK-VKPDAFLYTVVIGHLCKI 62
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+D ++ + +G + TY L+H KA ++ + +EEM+S G P +
Sbjct: 63 NKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTY 122
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V+ G C ++D+ S ++ L G G + ++ L+ C+ R +E E E
Sbjct: 123 ATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAG 182
Query: 313 CNQSPEVLLHFFSGIIRLYALSD 335
Q V F SG+ + L +
Sbjct: 183 DVQDVIVYTSFISGLCKAGKLDE 205
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 124/289 (42%), Gaps = 15/289 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV-V 160
KG+ L YA ++ K + A+ + ++ G P +++++LI LC D
Sbjct: 113 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDG-LCKHDRHE 171
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A LFE+ + + Y +FISG G +D + I AG + + +Y +
Sbjct: 172 EARELFEMAAGDVQ---DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVI 228
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+ K ++ M +P +P+ +++GLC R+++ L+ +L G
Sbjct: 229 IYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGD 288
Query: 281 KINENMA-QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + ++ C+ R+D+ L+ + + P+V+ ++ II + RLD+
Sbjct: 289 RAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVT--YTAIIDAFCKVGRLDE 346
Query: 340 VEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFLDHIKG 385
RM ++G A DV ++I Y R A D ++ + G
Sbjct: 347 ARELFQRMHERG----CASDVVAYNILIRGYCRAAKVDEAIAMIEEMAG 391
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P V L+ S V A + E M+ + + P+ TY A I G +D
Sbjct: 255 PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYI 314
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
AG +V TY ++I K D ++ M G + ++ G C
Sbjct: 315 VLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYC 374
Query: 261 ARRKLDRVKSFLKFLLGGG 279
K+D + ++ + G G
Sbjct: 375 RAAKVDEAIAMIEEMAGRG 393
>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 882
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L++M+K G + + Y LI G+ + A++VF M+ G +PD + +LI
Sbjct: 409 LEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAK 468
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+S++E M P++ TY I+ GN+ A ++ + + G N+
Sbjct: 469 AGFLDVAMSMYERM-QEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIV 527
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LI KAR++ + + Y +M + G P V+E L L+ ++ +
Sbjct: 528 TYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEM 587
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + L+ + + G V++ E + + P V S +R++ L
Sbjct: 588 KQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRL 647
Query: 334 SD 335
D
Sbjct: 648 PD 649
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIAL K +N A+ ++ M+ G KPD ++ ++ G + A ++F M
Sbjct: 529 YNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEM- 587
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ Y I + GNV+ +WY A + AG NV T SL+ L+
Sbjct: 588 KQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRL 647
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M++LG+ PS+
Sbjct: 648 PDAYNLLQNMVTLGLNPSL 666
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I GK N+ A +F M QG P+ +N LI + + TAL L+ M
Sbjct: 494 YSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQ 553
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +KP+ TY + G ++ + + + Y LI KA +
Sbjct: 554 NAG-FKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNV 612
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ +Y M+ G++P++P +L +L + L+ ++
Sbjct: 613 EKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMV 658
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 4/252 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L++M+K G + + Y LI G + A++VF M+ G +PD + +LI
Sbjct: 400 LEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAK 459
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+S+++ M + P++ TY I+ GN+ A + + + G N+
Sbjct: 460 AGFIDVAMSMYKRMQEAG-LSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLV 518
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I KAR+++ + Y +M + G P V+E L L+ +S +
Sbjct: 519 TYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEM 578
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V++ E + + P V S +RL+ L
Sbjct: 579 QQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRL 638
Query: 334 SDRLDDVEYSVG 345
D + V+ V
Sbjct: 639 PDAYNLVQSMVA 650
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K +N A+ ++ M+ G +PD ++ ++ A G + A S+F + +
Sbjct: 520 YNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVF-VEM 578
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ Y + + GNV+ ++WY A + AG NV T SL+ L+
Sbjct: 579 QQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRL 638
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M++LG+ PS+
Sbjct: 639 PDAYNLVQSMVALGLRPSL 657
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 3/210 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIM 169
Y LI + K + AM ++ M+ G+ PD+ + S+I CL +G++ A LF M
Sbjct: 450 YCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTY-SVIINCLGKAGNLAAAHWLFCEM 508
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V PN TY+ I+ + N + K Y AGF + TY ++
Sbjct: 509 VE-HGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGY 567
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + + EM +P P+ +++ +++ + + +L G N
Sbjct: 568 LEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNS 627
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + L R+ + ++++ P +
Sbjct: 628 LLSAFLRLHRLPDAYNLVQSMVALGLRPSL 657
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 1/186 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I GK N+ A +F M G P+ +N +I + + AL L+ M
Sbjct: 485 YSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQ 544
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ ++P+ TY + G ++ + + + Y L+ KA +
Sbjct: 545 NAG-FQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNV 603
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +Y+ M++ G++P++P +L +L + ++ ++ G + + L
Sbjct: 604 EKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLL 663
Query: 291 VKCYCE 296
+ C E
Sbjct: 664 LSCCTE 669
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 9/263 (3%)
Query: 93 LEWRLDKMLKGNESC-LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
LE R DKML+ + C LD A L+G K + + A +F M +G+ PD F +L
Sbjct: 380 LEIR-DKMLE--QGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I G++ ALSLF IM + + KP+ TY+ I GF ++ N+ + I+
Sbjct: 437 IHGHCKEGNMGKALSLFGIM-TQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK 495
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
N +Y L++G R ++EM+ GI P++ V++G C L +
Sbjct: 496 IFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
FL ++ G + L+ + + +D+ + + P+V+ ++ I+
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVT--YNVILN 613
Query: 330 LYALSDRLDDVEYSVGRMGKQGL 352
+ R+ + E + +M ++G+
Sbjct: 614 GFCRQGRMQEAELILRKMIERGI 636
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 155/383 (40%), Gaps = 44/383 (11%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++A+I L + +A+ V L L + + Y L+ S + N A +
Sbjct: 256 FTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTT---TYNTLLVESCRNNNFLEAKDI 312
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F+ M +G+ PD F+SLI +G + AL F M +S P++ Y I+G+
Sbjct: 313 FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSG-LVPDNVIYTILINGYC 371
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G + + + G +++V Y ++++G K + + ++EM+ G++P
Sbjct: 372 RNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFC 431
Query: 251 ILEKVLEGLCARRKLDRVKSFL---------------KFLLGGGWKI----------NEN 285
++ G C + + S L+ G K NE
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEM 491
Query: 286 MAQK----------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+++K LV YC LG V E + + + P ++ + +I+ Y S
Sbjct: 492 ISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVT--CNTVIKGYCRSG 549
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATY 394
L + +G+M +G+ S +I + + D+ ++ ++ + TY
Sbjct: 550 DLSKADEFLGKMISEGVGPDSIT-YNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTY 608
Query: 395 DFLVAGYRRAGLSGKLDSVINEM 417
+ ++ G+ R G + + ++ +M
Sbjct: 609 NVILNGFCRQGRMQEAELILRKM 631
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M ++G+ PDS +N+LI + + A L M ++ +P+ TY+ ++GF G
Sbjct: 561 MISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM-ETKGLQPDVVTYNVILNGFCRQG 619
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
+ I G + TY +LI+G + + RF++EM+ G +P
Sbjct: 620 RMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 120 KVQNV-PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYK 176
K+ +V PF + ME +GI D +N+LI A G + A FE+M +S + K
Sbjct: 200 KIDDVKPFLI----DMEQKGIFADIVTYNTLINAYCREGLLGEA---FEVMNSMSGKGLK 252
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P TY+A I+G G + ++ G S + TY +L+ S + +F
Sbjct: 253 PTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDI 312
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+ +M+ G+ P + ++ G+ +R LD+ + + + G + + L+ YC
Sbjct: 313 FSDMLHRGVSPDLISFSSLI-GVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYC 371
Query: 296 ELGRVDELEE 305
G + E E
Sbjct: 372 RNGMMSEALE 381
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K N+ A+ +F M + IKPD +N LI + ++ A L+ M+
Sbjct: 433 FTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMI 492
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-------DAM------------------------- 198
S + + PN +Y ++G+ +LG V D M
Sbjct: 493 SRKIF-PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDL 551
Query: 199 ---NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+++ I+ G + TY +LI+G +K D +M + G+ P + +
Sbjct: 552 SKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVI 611
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
L G C + ++ + L+ ++ G + + L+ Y
Sbjct: 612 LNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGY 650
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF V++ SL+ G +K D Y E+ GI ++ L ++ LC K+D V
Sbjct: 145 GFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDV 204
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K FL + G + L+ YC G + E E + +++ P + +
Sbjct: 205 KPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTY 258
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 5/293 (1%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
+A V + G +PD+ FN+LI G + AL LF+ + E ++P+ TY
Sbjct: 165 YAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG-EGFQPDVVTYGTL 223
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
++G +GN A + + + NV Y ++I K R + EM++ GI
Sbjct: 224 MNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGI 283
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I ++ LC + V + L ++ N + +V C+ G + +
Sbjct: 284 SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHD 343
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
++ + K P+V+ ++ ++ + L +D+ M +G + ++I
Sbjct: 344 VVDMMIKRGVEPDVVT--YTALMDGHCLRSEMDEAVKVFDTMVHKG-CVPNVRSYNILIN 400
Query: 366 SYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y + D+ L+ + TY+ L+ G G ++ +EM
Sbjct: 401 GYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEM 453
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 5/203 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMVSSEEYKP 177
K + V A ++F+ M +GI PD +NSLI A LC VT +L MV+S + P
Sbjct: 264 KDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT--TLLNEMVNS-KIMP 320
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N + + G + + I G +V TY +L+ G + D + +
Sbjct: 321 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 380
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ M+ G +P++ ++ G C +++D+ L+ + G + L+ C +
Sbjct: 381 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV 440
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
GR+ + Q P+++
Sbjct: 441 GRLQHAIALFHEMVASGQIPDLV 463
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSI 199
Query: 186 ISGFSSLGN----VDAMNKWYAANIAA-------------------------------GF 210
++G G+ +D + K N+ A G
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 377
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGL 399
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 426 FQEMVSHGVLPDVMTY 441
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 312 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + ++ ++I G V A +LF + + KP
Sbjct: 451 NGKLEK---ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 506
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G + N TY +LI L+ D + +
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLI 566
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
EEM S G ++ V++ L + K + L++ L G K +++ +
Sbjct: 567 EEMKSCGFSADASSIKMVIDMLLSAMK----RLTLRYCLSKGSKSRQDLLE 613
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ A VF++M +G+KP++ ++ LI C + D L + M SS + N
Sbjct: 491 KNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSN-IEVNGVV 549
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
Y I+G +G + A I F V+ +Y S+I G +K + D YEEM
Sbjct: 550 YQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEM 609
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ GI P++ +++GLC ++D+ + G K++ L+ +C+
Sbjct: 610 CANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCK 665
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 3/212 (1%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ V L+K LK N Y+ LI K + + V M + I+ + V+ +
Sbjct: 496 ARTVFSNMLEKGLKPNNYT---YSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQT 552
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I G A L M+ + + + +Y++ I GF G +D Y A
Sbjct: 553 IINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCAN 612
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G S NV TY SL+ G K D +EM + G+ IP ++ G C + ++
Sbjct: 613 GISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESA 672
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ LL G ++ + L+ + LG +
Sbjct: 673 SALFSELLEEGLNPSQPVYNSLISGFRNLGNM 704
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+ +G+K D + +LI ++ +A +LF ++ E P+ Y++ I
Sbjct: 637 ALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLE-EGLNPSQPVYNSLI 695
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF +LGN+ A Y + G ++ TY +LI G LK + Y EM ++G++
Sbjct: 696 SGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLV 755
Query: 247 PSIPILEKVLEGLCARRKLDRV 268
P + ++ GL + + +V
Sbjct: 756 PDEIMYTVIVNGLSKKGQFVKV 777
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 1/174 (0%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
LE R + KG + + Y LI K N+ A +F+ + +G+ P V+NSLI
Sbjct: 638 LEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISG 697
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++V AL L++ M+ + + + TY I G GN+ + Y A G
Sbjct: 698 FRNLGNMVAALDLYKKML-KDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVP 756
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ Y +++G K F V + +EEM + P++ I V+ G LD
Sbjct: 757 DEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLD 810
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 36/229 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF+ +G +PDS +++ + AC + ++ A SL M + P+ +TY + I
Sbjct: 251 ALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVI 310
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS-------------- 232
GN++ +W ++ G S+NV SLI G K D S
Sbjct: 311 LASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPS 370
Query: 233 ---------VDR------------FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++R FY++M SLG+ PS+ + +++G +K +
Sbjct: 371 PNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKL 430
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
G N + ++ C+ G++D+ E L + P V+
Sbjct: 431 FDESFETGLA-NVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVV 478
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
N SQ +++LI+ ++ A L L KMLK C L Y LI K N+
Sbjct: 683 GLNPSQPVYNSLISGFRNLGNMVAALDL---YKKMLKDGLRCDLGTYTTLIDGLLKEGNL 739
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A ++T M+A G+ PD ++ ++ G V + +FE M PN Y+A
Sbjct: 740 ILASDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEM-KKNNVTPNVLIYNA 798
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
I+G GN+D + + + G + T++ L+ G +
Sbjct: 799 VIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGKV 839
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF VN + + L++ K R D +M+ LG+IP +P + + L L R +
Sbjct: 157 GFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEA 216
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLH 322
K ++ G + Q L++ R ++ E LE ++ P+ LL+
Sbjct: 217 KELYSRMVAIGVDGDNGTTQLLMRASL---REEKPAEALEVFSRAIERGAEPDSLLY 270
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM++ + + G KPD ++N+++ A+ +++ M E +P+ T
Sbjct: 244 KNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM-KEEGVEPDQIT 302
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I G S G V+ + + AG+ + TY SL++G + + EEM
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEME 362
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P+ +L GLC R +D+ + + G K+ N LV+ + G+V
Sbjct: 363 ARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVA 422
Query: 302 ELEE 305
E E
Sbjct: 423 EAYE 426
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A +M G +PD+A + SL+ G+ + ALSL E M
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEM- 361
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ PN TY+ + G +D + Y ++G + Y +L+ +K+
Sbjct: 362 EARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ Y+ I+G G VD ++++ GF + TY +LIHG A + D R
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 737
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM+ G++P+I ++ GLC +DR + L G N L+ YC+
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797
Query: 297 LGRVDE--------LEEQLETLTKCN 314
+G +D +EE + +CN
Sbjct: 798 IGNMDAAFKLKDKMIEEGISPSIQCN 823
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P++ V+N I +G V A F M+S + + P++ TY I G+S+ GNVD +
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 736
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G N+ TY +LI+G K+ + D R + ++ G+ P++ +++G C
Sbjct: 737 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 796
Query: 261 ARRKLD 266
+D
Sbjct: 797 KIGNMD 802
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K++N A ++ + A+G FN++I G +V A +F+ M
Sbjct: 441 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM- 499
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY I G+ NV K A S +++ Y SLI G K+R
Sbjct: 500 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
V EM G+ P+I +++G C LD+ S + G N + +
Sbjct: 560 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 619
Query: 291 VKCYCELGRVDE 302
V LGR+DE
Sbjct: 620 VSGLYRLGRIDE 631
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 35/227 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV---------------- 170
A++VF +M G P NSL+ + +G+ TA +++ M+
Sbjct: 141 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 200
Query: 171 ------------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ +PN TY + I+G+ SLG+V+A G S
Sbjct: 201 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 260
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV TY LI G K D ++ M ++P +++G C K+D
Sbjct: 261 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 320
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L +L G K N + L+ YC+ G + E E + + N P+
Sbjct: 321 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 367
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 4/207 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G++P+ ++SLI + GDV A + + M S + N TY I G+
Sbjct: 218 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQC 276
Query: 194 NVDAMNK-WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+D K A + + Y LI G + D R +EM+ LG+ ++ I
Sbjct: 277 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 336
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ G C R ++ + + ++ K + L+ YC G E + + +
Sbjct: 337 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 396
Query: 313 CNQSPEVLLH--FFSGIIRLYALSDRL 337
P VL + G+ R+ A D L
Sbjct: 397 EGIEPTVLTYNTLLKGLCRVGAFDDAL 423
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 98 DKMLKG--NESCL--DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+K+L+G E+ L DE A + + G + + A+ + M G+K + + NSLI
Sbjct: 282 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 341
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G++ A + MV KP+S +Y+ + G+ G+ + G
Sbjct: 342 GYCKRGEIHEAEGVITRMVDWN-LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE 400
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
V TY +L+ G + FD + + MM G+ P +L+GL + +
Sbjct: 401 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTL 460
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K +L G+ + ++ C++G++ E EE + + SP+
Sbjct: 461 WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 507
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 122/328 (37%), Gaps = 47/328 (14%)
Query: 63 DIFA--FNSSQFSWDALITSLQSSSPKKAQLV-LEWRLDKMLKGNESCLDE---YACLIA 116
DI A F S+ +++ +I+ L K ++V E DKM + C + Y LI
Sbjct: 463 DILARGFTKSRITFNTMISGL----CKMGKMVEAEEIFDKM--KDLGCSPDGITYRTLID 516
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K NV A V +ME + I P ++NSLI S +V L M
Sbjct: 517 GYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEM-GIRGLT 575
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY A I G+ G +D Y G S N+ +++ G + D +
Sbjct: 576 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 635
Query: 237 YEEMMSLGIIPS-----------------------------IP---ILEKVLEGLCARRK 264
++M+ G P +P + + GLC K
Sbjct: 636 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 695
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+D + F L G+ + L+ Y G VDE + + + P ++ +
Sbjct: 696 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT--Y 753
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ +I S+ +D + ++ ++GL
Sbjct: 754 NALINGLCKSENVDRAQRLFHKLHQKGL 781
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 20/283 (7%)
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
VF+ ++ + G AL +F+ M P+ ++ ++ ++ G + Y
Sbjct: 123 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYVYQ 181
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
I G +V +++ K D F ++M +LG+ P+I ++ G +
Sbjct: 182 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 241
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL-- 321
++ K LKF+ G N L+K YC+ ++DE E+ L + Q L+
Sbjct: 242 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM----QEEAALVPD 297
Query: 322 -HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF------RCAAYD 374
+ +I Y + ++DD + M + GL + IC+ R ++
Sbjct: 298 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK------TNLFICNSLINGYCKRGEIHE 351
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + + K +Y+ L+ GY R G + + ++ ++M
Sbjct: 352 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKM 394
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ Y+ I+G G VD ++++ GF + TY +LIHG A + D R
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM+ G++P+I ++ GLC +DR + L G N L+ YC+
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
+G +D + + + + SP V+ +
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTY 857
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P++ V+N I +G V A F M+S + + P++ TY I G+S+ GNVD +
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 770
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G N+ TY +LI+G K+ + D R + ++ G+ P++ +++G C
Sbjct: 771 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 830
Query: 261 ARRKLD 266
+D
Sbjct: 831 KIGNMD 836
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K++N A ++ + A+G FN++I G +V A +F+ M
Sbjct: 475 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM- 533
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY I G+ NV K A S +++ Y SLI G K+R
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRL 593
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
V EM G+ P+I +++G C LD+ S + G N + +
Sbjct: 594 VEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 653
Query: 291 VKCYCELGRVDE 302
V LGR+DE
Sbjct: 654 VSGLYRLGRIDE 665
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 35/227 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV---------------- 170
A++VF +M G P NSL+ + +G+ TA +++ M+
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234
Query: 171 ------------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ +PN TY + I+G+ SLG+V+A G S
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV TY LI G K D ++ M ++P +++G C K+D
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L +L G K N + L+ YC+ G + E E + + N P+
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 4/207 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G++P+ ++SLI + GDV A + + M S + N TY I G+
Sbjct: 252 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQC 310
Query: 194 NVDAMNK-WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+D K A + + Y LI G + D R +EM+ LG+ ++ I
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ G C R ++ + + ++ K + L+ YC G E + + +
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430
Query: 313 CNQSPEVLLH--FFSGIIRLYALSDRL 337
P VL + G+ R+ A D L
Sbjct: 431 EGIEPTVLTYNTLLKGLCRVGAFDDAL 457
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 98 DKMLKG--NESCL--DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+K+L+G E+ L DE A + + G + + A+ + M G+K + + NSLI
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G++ A + MV KP+S +Y+ + G+ G+ + G
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWN-LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE 434
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
V TY +L+ G + FD + + MM G+ P +L+GL + +
Sbjct: 435 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTL 494
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K +L G+ + ++ C++G++ E EE + + SP+
Sbjct: 495 WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNV 124
F F++ LI ++ L D+ML+ G + Y LI K +NV
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLR---DEMLRRGLVPNIVTYNALINGLCKSENV 800
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F + +G+ P+ +N+LI G++ A L + M+ E P+ TY A
Sbjct: 801 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE-EGISPSVVTYSA 859
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+G G+++ K I AG + Y +L+ G +++ + + + Y +MM +
Sbjct: 860 LINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLY-DMMHIR 918
Query: 245 IIPSIPILEKVLE 257
+ + I K ++
Sbjct: 919 CLSTTAISHKQVD 931
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 122/328 (37%), Gaps = 47/328 (14%)
Query: 63 DIFA--FNSSQFSWDALITSLQSSSPKKAQLV-LEWRLDKMLKGNESCLDE---YACLIA 116
DI A F S+ +++ +I+ L K ++V E DKM + C + Y LI
Sbjct: 497 DILARGFTKSRITFNTMISGL----CKMGKMVEAEEIFDKM--KDLGCSPDGITYRTLID 550
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K NV A V +ME + I P ++NSLI S +V L M
Sbjct: 551 GYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEM-GIRGLT 609
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY A I G+ G +D Y G S N+ +++ G + D +
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669
Query: 237 YEEMMSLGIIPS-----------------------------IP---ILEKVLEGLCARRK 264
++M+ G P +P + + GLC K
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+D + F L G+ + L+ Y G VDE + + + P ++ +
Sbjct: 730 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT--Y 787
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ +I S+ +D + ++ ++GL
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQKGL 815
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 20/283 (7%)
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
VF+ ++ + G AL +F+ M P+ ++ ++ ++ G + Y
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYVYQ 215
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
I G +V +++ K D F ++M +LG+ P+I ++ G +
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL-- 321
++ K LKF+ G N L+K YC+ ++DE E+ L + Q L+
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM----QEEAALVPD 331
Query: 322 -HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF------RCAAYD 374
+ +I Y + ++DD + M + GL + IC+ R ++
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK------TNLFICNSLINGYCKRGEIHE 385
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + + K +Y+ L+ GY R G + + ++ ++M
Sbjct: 386 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKM 428
>gi|297838283|ref|XP_002887023.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332864|gb|EFH63282.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 539
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y + + + +V A + + ME G+ P FN LI C G L EIMV
Sbjct: 336 YTAFVRVCCERGDVEEAERLMSEMEDSGVNPYEETFNFLIVGCARFGREEKGLEYCEIMV 395
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ ++ + S + NV+ N+ +I GF + TY LI G ++
Sbjct: 396 A-RGLMPSCSAFNGMVKRLSEIDNVNRANEILTKSIDKGFVPDEHTYSHLIRGFVEGNSI 454
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + EM I P + ++ GLCA K++ + +L+ + + N ++ + +
Sbjct: 455 DQALKLFYEMEYRKISPGFEVFRSLIVGLCACGKVEAGEKYLRIMKRRLIEPNADIYEAM 514
Query: 291 VKCYCELG 298
+ + ++G
Sbjct: 515 INAFQKIG 522
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--- 176
++ NV A + T +G PD ++ LI + + AL LF M EY+
Sbjct: 415 EIDNVNRANEILTKSIDKGFVPDEHTYSHLIRGFVEGNSIDQALKLFYEM----EYRKIS 470
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P + + + I G + G V+A K+ N YE++I+ K D + D+
Sbjct: 471 PGFEVFRSLIVGLCACGKVEAGEKYLRIMKRRLIEPNADIYEAMINAFQKIGDKTNADKV 530
Query: 237 YEEMM 241
Y EM+
Sbjct: 531 YNEMI 535
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+A +L +DK +E Y+ LI + ++ A+ +F ME + I P VF
Sbjct: 421 RANEILTKSIDKGFVPDEHT---YSHLIRGFVEGNSIDQALKLFYEMEYRKISPGFEVFR 477
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
SLI G V IM +PN+ Y+A I+ F +G+ +K Y
Sbjct: 478 SLIVGLCACGKVEAGEKYLRIM-KRRLIEPNADIYEAMINAFQKIGDKTNADKVY 531
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 17/253 (6%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V++ A V ME G+ + V++++I SG++ AL ++E MV+S +PN
Sbjct: 237 GRVKD---AWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASP-VRPN 292
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y A I G ++ G + + I + + N+ TY S+I G K D +E
Sbjct: 293 VVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWE 352
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G +P+ ++ GLC +L K +L G + ++K C G
Sbjct: 353 EMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSG 412
Query: 299 RVD-ELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
VD L + L + P+V+ + G++ L +D + RM QG
Sbjct: 413 MVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMD----LLNRMLDQGC--- 465
Query: 356 SAEDVEMVICSYF 368
D + V C+ F
Sbjct: 466 ---DPDTVTCNIF 475
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 4/246 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEA 136
+SL P++ V L +++ G + D+ Y+ +++ V A+ + M A
Sbjct: 88 SSLVPRDPRRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVA 147
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+ A FN ++ A L +GDV A LFE M + P + TY+ + G G
Sbjct: 148 DGVVAAEA-FNPVLRAMLRAGDVKGAAKLFEFM-QLKGCVPTAATYNVLVHGLLVCGRAG 205
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A G V TY +++ G ++ + EEM G+ + + V+
Sbjct: 206 AAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVI 265
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C ++D + ++ + N + ++ G++ E E + +
Sbjct: 266 TGFCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCA 325
Query: 317 PEVLLH 322
P ++ +
Sbjct: 326 PNIITY 331
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI V + AM V+ M +G PD+ + S+I SG V L LF M+
Sbjct: 366 YSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDML 425
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV----DAMNKW--------------YAANIAAGFSV 212
+S P+ +Y+ + G ++ D +N+ + AG
Sbjct: 426 ASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAGERK 485
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ E L+ R + M++ I+P PI E V+ +C R+++ RV
Sbjct: 486 GREFLEGLVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVRDVCRRKRVWRV 541
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 38/266 (14%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ V FA V + G +PD F +LI G + AL LF+ M+ E ++PN
Sbjct: 103 HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID-EGFQPNV 161
Query: 180 KTYDAFISGFSSLGN--------------------------VDAMNK---------WYAA 204
TY I+G +GN +D++ K ++
Sbjct: 162 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 221
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G S ++ TY SL+H ++ V +M++ I+P + I V++ LC K
Sbjct: 222 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 281
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ + ++ G + + L+ +C +DE + + + + +P+V+ +
Sbjct: 282 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVI--SY 339
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +I Y ++D Y M ++
Sbjct: 340 TTLINGYCKIHKIDKAMYLFEEMCRK 365
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 3/243 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++A L+ K+++ + + T M++ G+ P+ N LI + V A S+ +
Sbjct: 58 DFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKI 117
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++P+ T+ I G G + + I GF NV TY +LI+G K +
Sbjct: 118 LKLG-HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN 176
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ R M P + I +++ LC R++ + ++G G +
Sbjct: 177 TSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTS 236
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV C L + L + P+V++ FS ++ ++ + V M +
Sbjct: 237 LVHALCNLCEWKHVTTLLNQMVNSKILPDVVI--FSTVVDALCKEGKVTEAHEIVDMMIQ 294
Query: 350 QGL 352
+G+
Sbjct: 295 RGV 297
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 4/194 (2%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD +F++++ A G V A + ++M+ +P+ TY
Sbjct: 249 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQ-RGVEPDVVTYTTL 307
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G +D K + + GF+ +V +Y +LI+G K D +EEM
Sbjct: 308 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP ++ GLC +L + ++ G + L+ C+ ++E
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMA 427
Query: 306 QLETLTKCNQSPEV 319
L+ + N +P++
Sbjct: 428 LLKAIEASNLNPDI 441
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 83/201 (41%), Gaps = 4/201 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV A + M +G++PD + +L+ ++ A+ +F++MV + + P+
Sbjct: 280 GKVTE---AHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR-KGFAPD 335
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+Y I+G+ + +D + + + +TY +L+HG +
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFH 395
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM++ G +P + +L+ LC L+ + LK + + + ++ C G
Sbjct: 396 EMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 455
Query: 299 RVDELEEQLETLTKCNQSPEV 319
++ + L+ P V
Sbjct: 456 ELEAARDLFSNLSSKGLHPSV 476
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + AM++F M + PD+ +N+L+ G + A++LF MV
Sbjct: 339 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMV 398
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY + +++ A A+ + ++Q Y +I G +A +
Sbjct: 399 ARGQM-PDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGEL 457
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
++ + + S G+ PS+ ++ GLC R L+
Sbjct: 458 EAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNE 494
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M +G PD + +LI + A+ LFE M +E+ P++KTY+ +
Sbjct: 320 AVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCR-KEWIPDTKTYNTLM 378
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + +A G ++ TY L+ K + + + + +
Sbjct: 379 HGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLN 438
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I + +++G+C +L+ + L G + ++ C+ G ++E +
Sbjct: 439 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 498
Query: 307 LETLTKCNQSPE 318
+ + SP+
Sbjct: 499 FMEMDGNDCSPD 510
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + ++EA + PD V+N +I +G++ A LF + SS+ P+ TY+ I
Sbjct: 425 AMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL-SSKGLHPSVWTYNIMI 483
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G ++ NK + S + TY ++ G L+ + + EEM++ G
Sbjct: 484 HGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFS 543
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL 272
+ ++E L + LD+ FL
Sbjct: 544 ADVSTTTLLVEML-SDDGLDQSSCFL 568
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 4/174 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G++Q+ A+ +F M A+G PD ++ L+ + + + A++L + + +S P+
Sbjct: 385 GRLQD---AIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN-LNPD 440
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ Y+ I G G ++A ++ + G +V TY +IHG K + ++ +
Sbjct: 441 IQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFM 500
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
EM P + G + R L+ +L G+ + + LV+
Sbjct: 501 EMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVE 554
>gi|297604496|ref|NP_001055521.2| Os05g0407900 [Oryza sativa Japonica Group]
gi|222631563|gb|EEE63695.1| hypothetical protein OsJ_18513 [Oryza sativa Japonica Group]
gi|255676360|dbj|BAF17435.2| Os05g0407900 [Oryza sativa Japonica Group]
Length = 607
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 13/286 (4%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-YKPNSKTYDAFISGFSSLGNVDAMN 199
PD A++N+L+ + + SG + F + PN+ +Y+ I+ F VD M
Sbjct: 172 PDQALYNALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHME 231
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A+G + TY ++I G L A ++ ++ ++EM+S + P +L G
Sbjct: 232 ATLLSLDASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGY 291
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQS 316
+ +++ + +++ + ++ YC+ VD ++EE L+ L +
Sbjct: 292 AHAGMIYKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYR 351
Query: 317 P--EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD 374
P VLL IR YA ++ +E + ++ + + + +I SYF+C A D
Sbjct: 352 PWLAVLL------IRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVD 405
Query: 375 RLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
+L F+ + +KL R+ Y + Y + ++ V++EM+F
Sbjct: 406 KLAHFIRQAEEAGWKLCRSLYHCKMVMYGKQHRLPEMHGVLDEMEF 451
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 11/270 (4%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYA 112
+++DIF++ ++ F++ +LI L + S K L L++M N + +
Sbjct: 133 EALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASAL---LNEMTSLNIMPNVVTFN 189
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ K V A V +M G++PD +NSL+ +VV A LF++M++
Sbjct: 190 VLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMIT- 248
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ KP+ +Y I+G+ +D + + I G + N +Y +LIHG +
Sbjct: 249 KGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLRE 308
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ M + G +P++ +L+G C + L + + + K N M LV
Sbjct: 309 AQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVN 368
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G + + E L P V ++
Sbjct: 369 AMCKSGNLKDARELFSELFVIGLQPNVQIY 398
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++Q V V G++P F +LI G A+ LF+ MV+ +P+
Sbjct: 22 QLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVA-RGCQPDD 80
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G +G + AG +NV TY +LIH K R + +
Sbjct: 81 YTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSY 140
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + I P+I +++GLC + + L + N LV +C+ G+
Sbjct: 141 MKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGK 200
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
V E L+T+T+ P+V+ +
Sbjct: 201 VLAAEGVLKTMTEMGVEPDVVTY 223
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 1/209 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V A+ +F+ M+A+ I P + SLI LC+ S +
Sbjct: 118 YSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQG-LCNFSRWKEASALLNEM 176
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S PN T++ + F G V A G +V TY SL++G +
Sbjct: 177 TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEV 236
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++ M++ G P + ++ G C +++D K ++ G N L
Sbjct: 237 VEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTL 296
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ C+LGR+ E ++ + + P +
Sbjct: 297 IHGLCQLGRLREAQDLFKNMHTNGNLPNL 325
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 9/310 (2%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + + LI GKV A+ +F M A+G +PD + ++I G+ A
Sbjct: 40 GLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALA 99
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LF+ M + N TY I V+ ++ A S + TY SLI
Sbjct: 100 AGLFKKM-EEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + EM SL I+P++ +++ C K+ + LK + G +
Sbjct: 159 GLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEP 218
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ L+ Y V E + + + P+V +S +I Y + R+D+ +
Sbjct: 219 DVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVF--SYSILINGYCKAKRIDEAKQ 276
Query: 343 SVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLD-HIKGSYKLRRATYDFLVA 399
M QG + + ++ +C R + DLF + H G+ TY L+
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGLCQLGRLR--EAQDLFKNMHTNGNLP-NLYTYAILLD 333
Query: 400 GYRRAGLSGK 409
G+ + G GK
Sbjct: 334 GFCKQGYLGK 343
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 59/146 (40%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ T + I+ F L VD A I G + T+ +LI+G K F
Sbjct: 8 PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+++M++ G P ++ GLC + K + G ++N L+ C+
Sbjct: 68 FDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCK 127
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
RV+E + + + SP + +
Sbjct: 128 YRRVNEALDIFSYMKAKDISPTIFTY 153
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F +M G P+ + L+ G + A LF M S+ KPN Y+ +
Sbjct: 309 AQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTY-LKPNLVMYNILV 367
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ GN+ + ++ G NVQ Y ++I+G K D + M G
Sbjct: 368 NAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCP 427
Query: 247 P 247
P
Sbjct: 428 P 428
>gi|242063818|ref|XP_002453198.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
gi|241933029|gb|EES06174.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
Length = 393
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ + G++ D+ ++N+L+ A + + D L +F M + P+ TY+ I G
Sbjct: 187 ILPVLRDHGVRADAHLYNALMKAHVAADDPGAVLRVFRQM-KDDGVDPDLVTYNTLIFGL 245
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G V + A A G +V TY SL++G D + EEM + G P+
Sbjct: 246 ARAGMVRKARAFIHAMAAEGHLPDVITYTSLMNGMCVQGDALGALKLLEEMEAEGCQPNE 305
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC +KLD+ K ++G G K++ V+ C G V + E
Sbjct: 306 RTYNTLLMGLCKNKKLDKAVEVYKSMVGAGMKLDSPAYASYVRALCRSGSVADAYE 361
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ VF M+ G+ PD +N+LI +G V A + M ++E + P+ TY + ++
Sbjct: 220 LRVFRQMKDDGVDPDLVTYNTLIFGLARAGMVRKARAFIHAM-AAEGHLPDVITYTSLMN 278
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G+ K A G N +TY +L+ G K + D Y+ M+ G+
Sbjct: 279 GMCVQGDALGALKLLEEMEAEGCQPNERTYNTLLMGLCKNKKLDKAVEVYKSMVGAGMKL 338
Query: 248 SIPILEKVLEGLC 260
P + LC
Sbjct: 339 DSPAYASYVRALC 351
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A +G V+ +H +M A+G PD + SL+ GD + AL L E M +E
Sbjct: 245 LARAGMVRKARAFIH---AMAAEGHLPDVITYTSLMNGMCVQGDALGALKLLEEM-EAEG 300
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+PN +TY+ + G +D + Y + + AG ++ Y S +
Sbjct: 301 CQPNERTYNTLLMGLCKNKKLDKAVEVYKSMVGAGMKLDSPAYASYV 347
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F + QGI+ ++A FN L+C G V+ A L ++M+ + +P+ +Y+ +
Sbjct: 431 AEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVD-VRPDVISYNTLV 489
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G +D K ++ G + TY +L+HG KAR D + EM+ G+
Sbjct: 490 DGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLT 549
Query: 247 PSIPILEKVLEGL 259
P + +L GL
Sbjct: 550 PGVVTYNTILHGL 562
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 4/194 (2%)
Query: 162 ALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
AL L +M + + PN TY I G VD + I G N TY
Sbjct: 183 ALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTC 242
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LIHG L + V + +EM + G+ P I +L+ LC + ++ L+ G
Sbjct: 243 LIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKG 302
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
K + + L+ Y G + E+ L+ + + SP+ H F+ + YA +D+
Sbjct: 303 IKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPD--HHIFNIMFNAYAKKAMIDE 360
Query: 340 VEYSVGRMGKQGLS 353
+ +M +Q LS
Sbjct: 361 AMHIFDKMRQQWLS 374
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 9/241 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ K A ++F S+ +GIKP ++ L+ G + S ++MV
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMV 334
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ ++ + ++ +D + S V Y +LI K
Sbjct: 335 RNG-VSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRV 393
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +M++ G+ P I + ++ GLC K ++ + +L G ++N L
Sbjct: 394 DDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNIL 453
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD------DVEYSV 344
+ C GRV E + ++ + + + P+V+ ++ ++ + L+ R+D DV S+
Sbjct: 454 MCNLCREGRVMEAQRLIDLMLRVDVRPDVI--SYNTLVDGHCLTGRIDEAAKLLDVMVSI 511
Query: 345 G 345
G
Sbjct: 512 G 512
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AMH+F M Q + P + +LI A G V A+ F M++ E P+ + + +
Sbjct: 361 AMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMIN-EGVTPDIFVFSSLV 419
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ + K + + G +N + L+ + R + M+ + +
Sbjct: 420 YGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVR 479
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + +++G C ++D L ++ G K +E L+ YC+ R+D+
Sbjct: 480 PDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDD 535
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 45/241 (18%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVS--SEEYKPNSKT 181
A+ +F M FN L+ CS +SLF M+ S + P+S T
Sbjct: 35 ALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSSCT 94
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDS-----VDR 235
Y I F +G + + + G+S+ N + L+ G A+ D + R
Sbjct: 95 YTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRR 154
Query: 236 FYEEMMSLGII----------------------------------PSIPILEKVLEGLCA 261
E +L +I P++ V++GLC
Sbjct: 155 MPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCK 214
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
+ +DR K + ++ G + N + L+ Y G+ E+ + L+ ++ P+ ++
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVI 274
Query: 322 H 322
+
Sbjct: 275 Y 275
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 135/312 (43%), Gaps = 19/312 (6%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE+ ++G QN + A+ +F + +G+KP ++N LI G ++ AL +
Sbjct: 355 DEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMM 414
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M S + TY+ I+G +G V N IA G+ +V T+ +LI G K
Sbjct: 415 NEM-SENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCK 473
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ + +M S G+ P + VL GL K + + + ++ G N+
Sbjct: 474 QLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKIT 533
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L + C+ G+V+E + ++ + +P+ + F+ II +A + L R
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEILNKGITPDTV--SFATIISGFANNGDLKGAYQLFRR 591
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLD------LFLDHIKGSYKLRRATYDFLVAG 400
MG+Q + ++I ++ ++LD LFL+ G TY ++ G
Sbjct: 592 MGEQYKVSHTTATYNIMINAF-----AEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDG 646
Query: 401 YRRAGLSGKLDS 412
+ ++G DS
Sbjct: 647 F---CITGNTDS 655
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV A+ + + +GI PD+ F ++I +GD+ A LF M +
Sbjct: 544 AGKVNE---ALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSH 600
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ I+ F+ ++ K + A G + + TY +I G + DS +F
Sbjct: 601 TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFL 660
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
EM+ G IPS+ +V+ LC + ++ + F++ G
Sbjct: 661 LEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNG 702
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + S+ +G+ PD +N+LIC + +VV A +V+ +P+ TY+ I
Sbjct: 270 AMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGG-LEPDGFTYNTLI 328
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ +G + K I GF + TY SLI+G
Sbjct: 329 DGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLING----------------------- 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
LC ++DR + LG G K + L+K C+ G + + +
Sbjct: 366 ------------LCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQM 413
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ +++ S ++ + +G+ ++ +SD
Sbjct: 414 MNEMSENGCSSDIWTYNLVINGLCKMGCVSD 444
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 92/209 (44%), Gaps = 5/209 (2%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS V+N M F +M +G P+ +N L + +G V AL L + +++ +
Sbjct: 503 LNGLSKAVKNEDL-METFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILN-K 560
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLKARDFD 231
P++ ++ ISGF++ G++ + + + + V+ TY +I+ + D
Sbjct: 561 GITPDTVSFATIISGFANNGDLKGAYQLFR-RMGEQYKVSHTTATYNIMINAFAEKLDLH 619
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ + EM + G P +++G C D FL ++ G+ + +++
Sbjct: 620 MGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVI 679
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVL 320
C C RV E + + + PEV+
Sbjct: 680 NCLCVQHRVHEAVDIIHFMVHNGIVPEVV 708
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 74/182 (40%), Gaps = 1/182 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + +M +QG + ++ + +++ V A LF M+ + P+ T++ +
Sbjct: 165 ALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIF-PDVSTFNKLL 223
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G V + + G N+ T+ I G + + ++ G+
Sbjct: 224 HTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLT 283
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC + + +L L+ GG + + L+ YC++G + E+
Sbjct: 284 PDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKI 343
Query: 307 LE 308
L+
Sbjct: 344 LQ 345
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 13/296 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M+ GI PD F I + + +AL L MVS + + N+ Y +
Sbjct: 130 AHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVS-QGCQLNAVAYCTVV 188
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF + + + G +V T+ L+H K + +R +++ G+
Sbjct: 189 AGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMC 248
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ ++GLC + L S L ++ G + L+ C+ V E E+
Sbjct: 249 SNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKY 308
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L L P+ ++ +I Y L + E + QG K E CS
Sbjct: 309 LHKLVNGGLEPDGFT--YNTLIDGYCKMGMLQNAEKIL-----QGAICKGFVPDEFTYCS 361
Query: 367 YFR--CA--AYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
C DR L LF + K Y+ L+ G + GL + ++NEM
Sbjct: 362 LINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEM 417
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 84/204 (41%), Gaps = 4/204 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKVQ A+ VF M+ +P +N+++ + SG A +F + + + P+
Sbjct: 90 GKVQE---AVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVF-LRMKNVGIVPD 145
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ I F + + ++ G +N Y +++ G + +
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFN 205
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M+ +GI P + K+L LC + ++ + L +L G N ++ C G
Sbjct: 206 DMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKG 265
Query: 299 RVDELEEQLETLTKCNQSPEVLLH 322
+ L+++ + +P+V+ +
Sbjct: 266 MLSGAMSMLDSVIREGLTPDVVTY 289
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 4/199 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPN 178
K + V A+ +F ++E G K D+ N L+ CLC V A +LF M + N
Sbjct: 213 KARQVSKAIEMFRNLEEFGGKCDTESLNVLL-QCLCQRSHVGAANLFFNAMKGGIPF--N 269
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I G+S G + M + A +A GFS N T+ LI G +A D +
Sbjct: 270 CMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFH 329
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M G +P+ + ++ + R D + F++ N + KL+ + +
Sbjct: 330 HMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKAR 389
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + E L+ + P
Sbjct: 390 KVADALEMLDEMVGRGMIP 408
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFS 190
+M A G P+ F+ LI +G + A+ +F M EE PN+ Y+A IS F
Sbjct: 295 AMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHM---EETGCVPNACVYNALISNFI 351
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
S + D K+Y +++ N+ TY LI LKAR +EM+ G+IP+
Sbjct: 352 STRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTG 411
Query: 251 ILEKVLEGLC 260
+ +E LC
Sbjct: 412 AITSFIEPLC 421
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 14/186 (7%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D Y LI K + V A+ + M +G+ P + S I G A+ +++
Sbjct: 375 MDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYK 434
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + Y + S G + + +G+S + + YE +I+G
Sbjct: 435 -KARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 493
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLK------------F 274
D+ EE + G PS I K+ L A K++ K FLK F
Sbjct: 494 GQLDTAVLVMEESLXKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKXARQNDNARRF 553
Query: 275 LLGGGW 280
G GW
Sbjct: 554 WRGNGW 559
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 127/331 (38%), Gaps = 49/331 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +++ A+ +F M G +P+ +N+L+ G A L M+
Sbjct: 191 YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMM 250
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN T+ A I F +G + + Y I +V TY SLI+G
Sbjct: 251 K-RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK- 289
D + + M G P+ I ++ G C ++++ G KI M+QK
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVE-----------DGMKIFYEMSQKG 358
Query: 290 ----------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L++ YC +GR D +E ++ P+ IR Y + L D
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD---------IRTYNV---LLD 406
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVI------------CSYFRCAAYDRLDLFLDHIKGSY 387
G++ K + F+ EM I C + D DLF
Sbjct: 407 GLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE--DAFDLFCSLFSKGM 464
Query: 388 KLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
K TY +++G+ R GL + DS+ +MK
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 95 WRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W L M+K E + + LI KV + A ++ M + PD + SLI
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSV 212
G + A +F +M + Y PN Y I GF V D M +Y + G
Sbjct: 304 CMYGLLDEARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMS-QKGVVA 361
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N TY LI G D + +M S P I +L+GLC K+++
Sbjct: 362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+++ IN +++ C+LG+V++ + +L P V+ + SG R
Sbjct: 422 EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 480
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A VF M ++ PD +N L+ C+G V AL +FE M
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM- 424
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N TY I G LG V+ + + + G NV TY ++I G +
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLI 484
Query: 231 DSVDRFYEEMMSLGIIPS 248
D +++M G +P+
Sbjct: 485 HEADSLFKKMKEDGFLPN 502
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 11/312 (3%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ L+++ K+ + +F M+ GI P N ++ C CL S + L ++
Sbjct: 85 DFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKM 144
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M ++P+ T+ + ++G+ ++ + + GF NV TY +LI K R
Sbjct: 145 M--KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR 202
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + +M + G P++ ++ GLC + L+ ++ + N
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
L+ + ++G++ E +E + + + P+V + +G+ +Y L D + Y + R
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC-MYGLLDEARQMFYLMER 321
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G + + +I + + D + +F + + TY L+ GY G
Sbjct: 322 NG----CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVG 377
Query: 406 LSGKLDSVINEM 417
V N+M
Sbjct: 378 RPDVAQEVFNQM 389
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V M +F M +G+ ++ + LI G A +F M
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM- 389
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+ +TY+ + G G V+ + +N+ TY +I G K
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKV 449
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + + S G+ P++ ++ G C R + S K + G+ NE++
Sbjct: 450 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESV 505
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ Y+ I+G G VD ++++ GF + TY +LIHG A + D R
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EM+ G++P+I ++ GLC +DR + L G N L+ YC+
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
+G +D + + + + SP V+ +
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTY 857
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P++ V+N I +G V A F M+S + + P++ TY I G+S+ GNVD +
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 770
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G N+ TY +LI+G K+ + D R + ++ G+ P++ +++G C
Sbjct: 771 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYC 830
Query: 261 ARRKLD 266
+D
Sbjct: 831 KIGNMD 836
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ K++N A ++ + A+G FN++I G +V A +F+ M
Sbjct: 475 YSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM- 533
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY I G+ NV K A S +++ Y SLI G K+R
Sbjct: 534 KDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRL 593
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
EM G+ P+I +++G C LD+ S + G N + +
Sbjct: 594 VEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTM 653
Query: 291 VKCYCELGRVDE 302
V LGR+DE
Sbjct: 654 VSGLYRLGRIDE 665
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 7/227 (3%)
Query: 98 DKMLKG--NESCL--DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+K+L+G E+ L DE A + + G + + A+ + M G+K + + NSLI
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G++ A + MV KP+S +Y+ + G+ G+ + G
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWN-LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE 434
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
V TY +L+ G + FD + + MM G+ P +L+GL + +
Sbjct: 435 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTL 494
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K +L G+ + ++ C++G++ E EE + + SP+
Sbjct: 495 WKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 35/227 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV---------------- 170
A++VF +M G P NSL+ + +G+ TA +++ M+
Sbjct: 175 ALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVN 234
Query: 171 ------------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ +PN TY + I+G+ SLG+V+A G S
Sbjct: 235 AFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 294
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV TY LI G K D ++ M ++P +++G C K+D
Sbjct: 295 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 354
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
L +L G K N + L+ YC+ G + E E + + N P+
Sbjct: 355 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 4/207 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G++P+ ++SLI + GDV A + + M S + N TY I G+
Sbjct: 252 MENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFM-SEKGVSRNVVTYTLLIKGYCKQC 310
Query: 194 NVDAMNK-WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+D K A + + Y LI G + D R +EM+ LG+ ++ I
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ G C R ++ + + ++ K + L+ YC G E + + +
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430
Query: 313 CNQSPEVLLH--FFSGIIRLYALSDRL 337
P VL + G+ R+ A D L
Sbjct: 431 EGIEPTVLTYNTLLKGLCRVGAFDDAL 457
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 145/394 (36%), Gaps = 49/394 (12%)
Query: 63 DIFA--FNSSQFSWDALITSLQSSSPKKAQLV-LEWRLDKMLKGNESCLDE---YACLIA 116
DI A F S+ +++ +I+ L K ++V E DKM + C + Y LI
Sbjct: 497 DILARGFTKSRITFNTMISGLC----KMGKMVEAEEIFDKM--KDLGCSPDGITYRTLID 550
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
K NV A V +ME + I P ++NSLI S +V L M
Sbjct: 551 GYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEM-GIRGLT 609
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY A I G+ G +D Y G S N+ +++ G + D +
Sbjct: 610 PNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLL 669
Query: 237 YEEMMSLGIIPS-----------------------------IP---ILEKVLEGLCARRK 264
++M+ G P +P + + GLC K
Sbjct: 670 MQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGK 729
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+D + F L G+ + L+ Y G VDE + + + P ++ +
Sbjct: 730 VDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT--Y 787
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDH-I 383
+ +I S+ +D + ++ ++GL F + +I Y + D D I
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQKGL-FPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846
Query: 384 KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ TY L+ G + G + ++N+M
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNV 124
F F++ LI ++ L D+ML+ G + Y LI K +NV
Sbjct: 744 GFVPDNFTYCTLIHGYSAAGNVDEAFRLR---DEMLRRGLVPNIVTYNALINGLCKSENV 800
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F + +G+ P+ +N+LI G++ A L + M+ E P+ TY A
Sbjct: 801 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE-EGISPSVVTYSA 859
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
I+G G+++ K I AG + Y +L+ G K +++ + +
Sbjct: 860 LINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEMSK 910
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 20/283 (7%)
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
VF+ ++ + G AL +F+ M P+ ++ ++ ++ G + Y
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYVYQ 215
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
I G +V +++ K D F ++M +LG+ P+I ++ G +
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL-- 321
++ K LKF+ G N L+K YC+ ++DE E+ L + Q L+
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM----QEEAALVPD 331
Query: 322 -HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF------RCAAYD 374
+ +I Y + ++DD + M + GL + IC+ R ++
Sbjct: 332 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK------TNLFICNSLINGYCKRGEIHE 385
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + + K +Y+ L+ GY R G + + ++ ++M
Sbjct: 386 AEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKM 428
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 1/175 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++G++P +N ++ S + TA
Sbjct: 214 GVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 273
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L F+ M + P++ TY+ I+G+ +D K + +V TY ++I
Sbjct: 274 LRFFDDM-KTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIK 332
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
G L D R +EEM S GI P+ +L GLC K+ K+ LK ++
Sbjct: 333 GYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMA 387
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 38/231 (16%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
D + +I + G+VQ + A + M +G+ D +F LI + +G V ++ +F+
Sbjct: 150 DTHMKMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQK 209
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + K+Y+ G +++ ++ G TY ++ G +
Sbjct: 210 M-KDLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSL 268
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
++ RF+++M + GI P ++ G
Sbjct: 269 RLETALRFFDDMKTRGISPDAVTYNTIING------------------------------ 298
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
YC ++DE E+ + N P V+ ++ +I+ Y DR+DD
Sbjct: 299 -----YCRFKKMDEAEKLFVEMKGNNSEPSVVT--YTTMIKGYLSVDRVDD 342
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 7/256 (2%)
Query: 48 LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNES 106
L+ VS+ +D + + + + + LI L LVL +D+M+K G E+
Sbjct: 151 LEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVL---IDRMVKYGCEA 207
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSL 165
Y ++ K N A+ +F ME + IK S V S++ LC G++ ALSL
Sbjct: 208 NEITYGPVLNRMCKSGNTALALDLFRKMEERSIKA-SVVQYSIVIDSLCKDGNLDDALSL 266
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F M + K + Y + I G + G D K I NV T+ +LI +
Sbjct: 267 FNEM-EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFV 325
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K Y EM++ GI P +++G C +L L ++ G + N
Sbjct: 326 KEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIV 385
Query: 286 MAQKLVKCYCELGRVD 301
L+ YC+ RVD
Sbjct: 386 TYSILINSYCKAKRVD 401
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 148/340 (43%), Gaps = 41/340 (12%)
Query: 36 SVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+V + N LI+ L L+ V++ +D + + +++ ++ ++ + S L L
Sbjct: 173 NVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLF 232
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
++++ + ++ + +Y+ +I K N+ A+ +F ME +GIK D ++S+I
Sbjct: 233 RKMEE--RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLC 290
Query: 155 CSG-------------------DVVTALSLFEIMV-------SSEEYK--------PNSK 180
G +VVT +L ++ V + E Y P++
Sbjct: 291 NDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTI 350
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY + I GF + N+ ++ G N+ TY LI+ KA+ D+ R + E+
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI 410
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
S G++ +++G C KL+ K + ++ G + L+ C+ G
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNG-- 468
Query: 301 DELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDRLDD 339
EL++ LE K +S +L + ++ II + ++DD
Sbjct: 469 -ELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDD 507
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 2/170 (1%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD M+ KG E + Y+ LI K + V M +F + ++G+ D+ +N+L+
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
SG + A LF+ MV S P+ TY + G G + + + + + +
Sbjct: 432 SGKLNVAKELFQEMV-SRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIG 490
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
Y +IHG A D + + G+ P + ++ GLC + L
Sbjct: 491 IYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSL 540
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + A + M ++G +P+ ++ LI + + V + LF +
Sbjct: 352 YSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLF-CEI 410
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS+ ++ TY+ + GF G ++ + + ++ G +V TY L+ G +
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+E+M +I I I ++ G+C K+D S L G K + +
Sbjct: 471 QKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVM 530
Query: 291 VKCYCELGRVDE 302
+ C+ G + E
Sbjct: 531 IGGLCKKGSLSE 542
>gi|224089793|ref|XP_002308814.1| predicted protein [Populus trichocarpa]
gi|222854790|gb|EEE92337.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 58/281 (20%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCS-GDVVTALSLFEIMVSSEEYKP 177
K +++ A +F M +G+KPD+ F+++I CA LC+ D A+ FE M S +P
Sbjct: 142 KARDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLAD--KAVEWFEKM-PSFGLEP 198
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ T+ I + GNV+ Y + ++ + +LI AR+FD FY
Sbjct: 199 DDVTFSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATPFSTLIRIYKVARNFDGCLNFY 258
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG------------------ 279
EEM +LG+ P++ I + +L+ + ++ +VK F + ++ G
Sbjct: 259 EEMKALGVKPNLVIYKILLDDMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRA 318
Query: 280 ------WKINENMAQK---------------------------LVKCYCELGRVDELEEQ 306
+KI M +K ++ + G+V E E
Sbjct: 319 RYGDDAFKIYREMKEKGFGIESVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENT 378
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L + + P + + + +I+ Y + R+DDV + R+
Sbjct: 379 LNEMFEAGFQPNIFI--LTSLIQCYGKAQRIDDVVKTFNRI 417
>gi|226529334|ref|NP_001142432.1| uncharacterized protein LOC100274616 [Zea mays]
gi|195604246|gb|ACG23953.1| hypothetical protein [Zea mays]
gi|219886145|gb|ACL53447.1| unknown [Zea mays]
gi|413951582|gb|AFW84231.1| hypothetical protein ZEAMMB73_551063 [Zea mays]
Length = 488
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 15/303 (4%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
++P A H S+ P A F ++I L A+ + M S P+ T
Sbjct: 172 DIPSASHALASLRRVADSPLPAEFYNIILQALSRLRRHDDAIRFYGEMTSVYRVAPDVHT 231
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
++ IS + VDA +W+ + V ++ +L+ G ++ + + EM+
Sbjct: 232 FNILISSSCRVEGVDAAMRWFGEMQRRSCAPTVVSFNTLMRGFIREGRYKEGTKVAREML 291
Query: 242 SLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
LG+ S+ +E ++ GLC + L+ + F++F LG G ++V+ C G+V
Sbjct: 292 ELGVGLSVASMEILIGGLCRGSKALEAAELFVEF-LGDGVVPEGFDCFEVVEALCRGGKV 350
Query: 301 DELEEQ----LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK- 355
D E LE TKC S + ++ + +LD+V + RM QG+
Sbjct: 351 DRAVEAVDMVLERNTKCCMSAPA----GATVLECLMEAGKLDEVYRLMWRMIDQGIVPDS 406
Query: 356 -SAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
S + +C R A ++L +F KG ++ TY LV G+ R G + +V+
Sbjct: 407 ISCNCIFEALCEAGRTADANQLRVFAKE-KG-FEADGETYRMLVQGFGRQGKRKEGKAVL 464
Query: 415 NEM 417
+EM
Sbjct: 465 DEM 467
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 16/229 (6%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C I +SG K +V A+ + M+ G PD +NS+I A +G VV A +
Sbjct: 203 DVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEIL 262
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLG----NVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+ M S P+ T++ + GF G ++ + + NI +V TY L++
Sbjct: 263 KTMSCS----PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILP----DVITYTILVN 314
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + EE++ G IP + +++GLC +++ +K + G +
Sbjct: 315 GLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRT 374
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
M LV YC G V + E L + N P + + G+I+
Sbjct: 375 GVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIK 423
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 3/244 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ +V V A ++ + QG PD + SL+ SG++ A L + M
Sbjct: 309 YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM- 367
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + Y + +SG+ GNV + A ++ + TY ++ G +K
Sbjct: 368 SVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSI 427
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++++ G +P + +++GLC ++ + G N+ +
Sbjct: 428 SKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSV 487
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
V C +GRVD+ + +++ +P V++ ++ +I SDR+DD + M Q
Sbjct: 488 VFGLCRVGRVDDAWSLVVEMSRKRHAPNVVV--YTSLIDGLCKSDRMDDACMVLDAMRGQ 545
Query: 351 GLSF 354
G++
Sbjct: 546 GVAL 549
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 3/216 (1%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D + G L + LI + K A+ +++ + PD +FN LI G
Sbjct: 52 DLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDG 111
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF--SVNVQ 215
+ A+ LFE M SS KP TY+ ISG GN++ + I G + ++
Sbjct: 112 NPDQAVKLFENMESS-RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIV 170
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI+ +A F E+M + GI P + ++ G+C ++ L +
Sbjct: 171 TYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGM 230
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
G + ++ C G+V E E L+T++
Sbjct: 231 KLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS 266
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 6/207 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV-SSEEYKPNSKTYDAF 185
A+ +F +ME+ +KP+ +N++I SG++ A L E M+ + P+ TY+
Sbjct: 116 AVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTL 175
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+ F + + AAG + +V T L+ G K D + + M G
Sbjct: 176 INAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGP 235
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P + ++ LC K+ LK + + N L+ +C+ G + E
Sbjct: 236 VPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFN---TLLDGFCKAGMLPRALE 292
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRL 330
LE + + N P+V+ + +G+ R+
Sbjct: 293 VLEEMCRENILPDVITYTILVNGLCRV 319
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 7/190 (3%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
E G K D +N L+ + SG +++ ++ S PN T+ I G G
Sbjct: 19 EQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSG-CSPNLVTFKILIRGNCKAGQ 77
Query: 195 VDAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
AM FSV +V + LIHG K + D + +E M S + P I
Sbjct: 78 --AMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTY 135
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--QKLVKCYCELGRVDELEEQLETL 310
V+ GLC L++ + L+ ++ G K ++ L+ + R+ E E +
Sbjct: 136 NTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKM 195
Query: 311 TKCNQSPEVL 320
+P+VL
Sbjct: 196 KAAGINPDVL 205
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 8/235 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYK 176
+GK+Q AM F ME + +KPD + +LI AC D T LSL+ E+ E
Sbjct: 268 AGKLQK---AMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIP 324
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+S Y I G + G NV Y +LI K + R
Sbjct: 325 PHS--YSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL 382
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+E M + G P ++ GLC +LD F G IN L+ +
Sbjct: 383 FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGK 442
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
GR+++ E E +++ + + + ++ II A ++D GRM ++G
Sbjct: 443 AGRIEDAENLFEEMSEKGCARDS--YCYNAIIDALAKHGKIDQALALFGRMEEEG 495
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 4/229 (1%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
A+ T+L S K + RL + +K G E Y+ L+ K + M +F
Sbjct: 361 AIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDF 420
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
+G+ ++ + SLI +G + A +LFE M S + +S Y+A I + G
Sbjct: 421 CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEM-SEKGCARDSYCYNAIIDALAKHG 479
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + G V T+ LI G K + +F+++M+ GI P++
Sbjct: 480 KIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFR 539
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ GLC K+ R L L G I E + ++ C+ R+ E
Sbjct: 540 ALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRIKE 587
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 4/199 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPN 178
K + V A+ +F ++E G K D+ N L+ CLC V A +LF M + N
Sbjct: 172 KARQVSKAIEMFRNLEEFGGKCDTESLNVLL-QCLCQRSHVGAANLFFNAMKGGIPF--N 228
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I G+S G + M + A +A GFS N T+ LI G +A D +
Sbjct: 229 CMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFH 288
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M G +P+ + ++ + R D + F++ N + KL+ + +
Sbjct: 289 HMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKAR 348
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + E L+ + P
Sbjct: 349 KVADALEMLDEMVGRGMIP 367
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFS 190
+M A G P+ F+ LI +G + A+ +F M EE PN+ Y+A IS F
Sbjct: 254 AMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHM---EETGCVPNACVYNALISNFI 310
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
S + D K+Y +++ N+ TY LI LKAR +EM+ G+IP+
Sbjct: 311 STRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTG 370
Query: 251 ILEKVLEGLC 260
+ +E LC
Sbjct: 371 AITSFIEPLC 380
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 14/186 (7%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D Y LI K + V A+ + M +G+ P + S I G A+ +++
Sbjct: 334 MDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYK 393
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + Y + S G + + +G+S + + YE +I+G
Sbjct: 394 -KARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 452
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV-KSFLK------------F 274
D+ EE + G PS I K+ L A K++ K FLK F
Sbjct: 453 GQLDTAVLVMEESLHKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKIARQNDNARRF 512
Query: 275 LLGGGW 280
G GW
Sbjct: 513 WRGNGW 518
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
S++ +I L + S K+A +LE K +E Y L+ K N A+ +
Sbjct: 81 ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT---YNTLLNGYCKEGNFHQALVI 137
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M G+ P + +LI + + ++ A+ F+ M +PN +TY I GFS
Sbjct: 138 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM-RIRGLRPNERTYTTLIDGFS 196
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G ++ + +GFS +V TY + IHG + +EM+ G+ P +
Sbjct: 197 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVV 256
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G C + +LDR + ++ G + L++ CE+ R+ E
Sbjct: 257 SYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTE 308
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 3/244 (1%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
L+ + F + +++ L+ LV+ + + G + Y LI
Sbjct: 103 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR--NGVSPSVVTYTALINSM 160
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
K +N+ AM F M +G++P+ + +LI G + A + M S + P+
Sbjct: 161 CKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG-FSPS 219
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+AFI G L ++ + G + +V +Y ++I G + + D + +
Sbjct: 220 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 279
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+ G+ P +++GLC R+L + +L G +E L+ YC G
Sbjct: 280 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 339
Query: 299 RVDE 302
+++
Sbjct: 340 DLNK 343
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 109/243 (44%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + A + SM ++G++P+ +N +I G + A + E M
Sbjct: 48 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM- 106
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY+ ++G+ GN +A + G S +V TY +LI+ KAR+
Sbjct: 107 GYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 166
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+++M G+ P+ +++G + L+ L + G+ +
Sbjct: 167 NRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAF 226
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C L R++E ++ + + +P+V+ +S II + LD M ++
Sbjct: 227 IHGHCVLERMEEALGVVQEMVEKGLAPDVV--SYSTIISGFCRKGELDRAFQMKQEMVEK 284
Query: 351 GLS 353
G+S
Sbjct: 285 GVS 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 115/301 (38%), Gaps = 46/301 (15%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+ P+ +N LI G++ L F M PN TY+ I + +G +D
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGEM-ERNGCLPNVVTYNTLIDAYCKMGRIDEA 64
Query: 199 --------NKWYAANIAA---------------------------GFSVNVQTYESLIHG 223
+K N+ + GF+ + TY +L++G
Sbjct: 65 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
K +F + EM+ G+ PS+ ++ +C R L+R F + G + N
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
E L+ + G ++E L +T+ SP V+ ++ I + + +R+++
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVT--YNAFIHGHCVLERMEEALGV 242
Query: 344 VGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVA 399
V M ++GL A DV +I + R DR + + ++ TY L+
Sbjct: 243 VQEMVEKGL----APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 298
Query: 400 G 400
G
Sbjct: 299 G 299
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 3/239 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + L Y +I + ++ A + M +G PD +N+L+ G+
Sbjct: 74 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQ 133
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL + MV + P+ TY A I+ N++ +++ G N +TY +LI
Sbjct: 134 ALVIHAEMVRNG-VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 192
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G + + R EM G PS+ + G C +++ ++ ++ G
Sbjct: 193 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLA 252
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLD 338
+ ++ +C G +D + + + + SP+ + + G+ + L++ D
Sbjct: 253 PDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 17/219 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI +++ + A + M G+ PD + +LI A GD+ AL L + M+
Sbjct: 293 YSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMI 352
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKW---------------YAANIAAGFSVNVQ 215
+ + P++ TY I+G + + Y I ++ +
Sbjct: 353 -HKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFK 411
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ +LI G DR +E M+ P + ++ G C L + + K +
Sbjct: 412 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQL-ETLTKC 313
+ G+ + L+K + G +E+ E + +TL C
Sbjct: 472 IHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSC 510
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 4/213 (1%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
I + S NV TY LI G + + EM G +P++ +++ C ++
Sbjct: 2 IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D LK + G + N ++ C G + E E LE + +P+ + ++
Sbjct: 62 DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT--YN 119
Query: 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK- 384
++ Y M + G+S S +I S + +R F D ++
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVRNGVS-PSVVTYTALINSMCKARNLNRAMEFFDQMRI 178
Query: 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ TY L+ G+ R GL + ++NEM
Sbjct: 179 RGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 211
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A++V+ M+ +G D ++N L C G V A+ +FE M SS P+S TY + I
Sbjct: 375 ALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLI 434
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ +SS+G + M + + +GF N+ SL+H KA+ D V + + ++M LGI
Sbjct: 435 NMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGIS 494
Query: 247 P 247
P
Sbjct: 495 P 495
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 6/236 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ N A+ ++ +A D+AVF+ LI SG+ V L+++ M KPN
Sbjct: 263 RTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDM-KVLGAKPNL 321
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + Y I+ G S N TY +L+ +AR Y+E
Sbjct: 322 TTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYKE 381
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKL--DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
M G I +L +L +CA + VK F G + L+ Y +
Sbjct: 382 MKEKGKDLDI-LLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSI 440
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
G++ E+E + + P +++ + ++ Y + R DDV ++ G+S
Sbjct: 441 GKILEMEAMFNEMMESGFEPNIIV--LTSLVHCYGKAKRTDDVVKIFNQLMDLGIS 494
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 4/210 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ LI + G N ++V+ M+ G KP+ +N+L+ A + A +++ M+
Sbjct: 289 FSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMI 348
Query: 171 SSEEYKPNSKTYDAFISGF-SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S+ PN TY A + + + N DA+N Y G +++ Y L
Sbjct: 349 SNG-LSPNWPTYAALLQAYCRARFNRDALNV-YKEMKEKGKDLDILLYNMLFDMCANVGC 406
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKLDRVKSFLKFLLGGGWKINENMAQ 288
D + +E M S G P L + + K+ +++ ++ G++ N +
Sbjct: 407 VDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLT 466
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LV CY + R D++ + L SP+
Sbjct: 467 SLVHCYGKAKRTDDVVKIFNQLMDLGISPD 496
>gi|326527577|dbj|BAK08063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G++ D+ V+N+L+ A D L + M + P+ TY+ + G + G V
Sbjct: 169 HGVRADAHVYNALMKAHCSDSDTAGLLGVLRRM-KDDGVDPDLVTYNTLVYGLARAGLVA 227
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A A G +V TY SL++G D + +EM + G P+ +L
Sbjct: 228 KARTYPGAMAAEGLFPDVITYTSLMNGMCVKGDALGALKLLDEMEANGCEPNDRTYNTLL 287
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
GLC RKLD K ++G G K+ ++ C GRV + E
Sbjct: 288 MGLCKNRKLDNAVEVYKSIVGAGMKLEPPAYATFIRALCRAGRVPDAYE 336
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+M A+G+ PD + SL+ GD + AL L + M + +PN +TY+ + G
Sbjct: 235 AMAAEGLFPDVITYTSLMNGMCVKGDALGALKLLDEM-EANGCEPNDRTYNTLLMGLCKN 293
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+D + Y + + AG + Y + I +A
Sbjct: 294 RKLDNAVEVYKSIVGAGMKLEPPAYATFIRALCRA 328
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 131 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSI 189
Query: 186 ISGFSSLGN----VDAMNKWYAANIAA-------------------------------GF 210
++G G+ +D + K N+ A G
Sbjct: 190 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 249
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 309
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 310 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 367
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 368 YCMVKRVDDGMKVFRNISKRGL 389
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 237 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 295
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 416 FQEMVSHGVLPDVMTY 431
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 302 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 357
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 358 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 417
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 418 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 477
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 478 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 516
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + ++ ++I G V A +LF + + KP
Sbjct: 441 NGKLEK---ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 496
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G + N TY +LI L+ D + +
Sbjct: 497 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLI 556
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
EEM S G ++ V++ L + K + L++ L G K +++ +
Sbjct: 557 EEMKSCGFSADASSIKMVIDMLLSAMK----RLTLRYCLSKGSKSRQDLLE 603
>gi|452821361|gb|EME28392.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 1088
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 18/252 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA + G++ + ++ M +G +P AV+ S + AC GD+ + F MV
Sbjct: 305 YAIIFEAFGRLGKLDQMSQLWKQMLQRGHQPTEAVYFSAMYACAIHGDLTSMFEYFRKMV 364
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN + Y I G ++ W G + N Y SLI+ D
Sbjct: 365 E-DGIHPNIRMYGMIIDALGKAGKLELAFSWLQKMTEEGIAPNDYIYTSLIYACGNVGDM 423
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-KLDRVKSFLKFLLGGGWKINENMAQK 289
+ YE M GI +I L +L G C + L+ + F K + G++++++ +
Sbjct: 424 ELAMNVYESMRRSGISGNIVTLSTLLHGYCKNKYPLEALNIFHK-MCRTGYRLSKSQFHE 482
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L C + + E + ETL K RL +D L D+ +++ G
Sbjct: 483 LFYCLGQFRMISETLQVFETLVK---------------QRLSCTTDDLYDILWNMSFAGN 527
Query: 350 QGLSFKSAEDVE 361
LS + +E
Sbjct: 528 DNLSILVYQKLE 539
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVF-NSLICACLCSGDVVT-----ALSLFEIMVSS 172
GKV++ A VF + +K D +F N + C LC G + AL LF + + +
Sbjct: 244 GKVES---AFEVF-----RNLKRDFDMFPNEVSCNILCKGLIQASRFSEALELFSVEMPA 295
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+ +Y F LG +D M++ + + G Y S ++ D S
Sbjct: 296 MGVLPSVTSYAIIFEAFGRLGKLDQMSQLWKQMLQRGHQPTEAVYFSAMYACAIHGDLTS 355
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ ++ +M+ GI P+I + +++ L KL+ S+L+ + G N+ + L+
Sbjct: 356 MFEYFRKMVEDGIHPNIRMYGMIIDALGKAGKLELAFSWLQKMTEEGIAPNDYIYTSLI 414
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 12/237 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYK 176
+GK+Q AM F ME + +KPD + +LI AC D T LSL+ E+ E
Sbjct: 266 AGKLQK---AMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIP 322
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+S Y I G + G NV Y +LI K + R
Sbjct: 323 PHS--YSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRL 380
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+E M + G P ++ GLC +LD F G IN L+ +
Sbjct: 381 FERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGK 440
Query: 297 LGRVDELEEQLETLTK--CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
GR+++ E E +++ C + + ++ II A ++D GRM ++G
Sbjct: 441 AGRIEDAENLFEEMSEKGCARDS----YCYNAIIDALAKHGKIDQALALFGRMEEEG 493
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 4/229 (1%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
A+ T+L S K + RL + +K G E Y+ L+ K + M +F
Sbjct: 359 AIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDF 418
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
+G+ ++ + SLI +G + A +LFE M S + +S Y+A I + G
Sbjct: 419 CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEM-SEKGCARDSYCYNAIIDALAKHG 477
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + G V T+ LI G K + +F+++M+ GI P++
Sbjct: 478 KIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFR 537
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ GLC K+ R L L G I E + ++ C+ R+ E
Sbjct: 538 ALAIGLCLCGKVARACKILDDLAPMGI-IPETAFEDMINTLCKAQRIKE 585
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI ++ A +F M + I+ D V++S+I G++ A +LF+ M
Sbjct: 290 YSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEM- 348
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN+ TY A I G G ++A + G +N+ + + + G +
Sbjct: 349 SQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKM 408
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R M GI + + GLC + D K L ++ G K N
Sbjct: 409 DEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMF 468
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ YC+ G + E E + K + P ++ ++ +I Y +++ M +
Sbjct: 469 IEIYCKEGNLAEAERLFRDMEKKGEVPNIIT--YNTLIDAYCKKEKVKQAHKIKSEMINK 526
Query: 351 GL 352
GL
Sbjct: 527 GL 528
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ F+++ L L + +A+ +L ++K +K N + + I + K N+
Sbjct: 422 GINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPN---VVTFTMFIEIYCKEGNL 478
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F ME +G P+ +N+LI A C + V + + ++ P+ TY +
Sbjct: 479 AEAERLFRDMEKKGEVPNIITYNTLIDA-YCKKEKVKQAHKIKSEMINKGLLPDLYTYSS 537
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G +G VD K + G + NV TY S+I G K D + Y+EMM +G
Sbjct: 538 LIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIG 597
Query: 245 IIP 247
+IP
Sbjct: 598 LIP 600
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 124 VPFAMHVFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V A + M +GI KP+ +N+L+ A + D + ++M E+ + TY
Sbjct: 232 VEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLM-EKEQVVFSVATY 290
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I +SS G+++ K + ++V Y S+I S + + ++EM
Sbjct: 291 SILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQ 350
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I+P+ ++ G+C +++ + L + G +N + + YC G++DE
Sbjct: 351 RDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDE 410
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI K + V A + + M +G+ PD ++SLI G V
Sbjct: 491 KGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDE 550
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL LF M + N TY + ISG S G D K Y + G + + + SL+
Sbjct: 551 ALKLFNEM-RLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609
Query: 222 --------HGSL---KARDFDSVDR 235
H L KA D DSV R
Sbjct: 610 GSFHKPLTHAGLDIQKASDSDSVLR 634
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 7/188 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
A V M+ G P+ +N+LI C +G + A ++ + MV +E PN T++
Sbjct: 242 ARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENE-VSPNLTTFN 300
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I GF N+ K + + NV TY SLI+G + ++M+S
Sbjct: 301 ILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSA 360
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE- 302
G+ P++ ++ G C + + G G + M L+ YC+LG++D+
Sbjct: 361 GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG 420
Query: 303 --LEEQLE 308
L+E++E
Sbjct: 421 FALKEEME 428
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 9/275 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL----QSSSPKKAQLVLEWRLDKMLKGNESC 107
+++ + ++ + ++ ++ + S++ LI + KA VL+ ++ + N
Sbjct: 239 MNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPN--- 295
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L + LI K N+P ++ VF M Q + P+ +NSLI G + A+ + +
Sbjct: 296 LTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRD 355
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
MVS+ +PN TY + I+GF G + + + G + Y LI K
Sbjct: 356 KMVSAG-VQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKL 414
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D EEM GI+P + ++ GLC ++ K L G +
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLP-DLVTF 473
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L++ YC G + L+ ++K P L +
Sbjct: 474 HILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTY 508
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLIA + N+ A +F + +G+ PD F+ L+ G+ A L + M
Sbjct: 439 YNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEM- 496
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA-MNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S KP TY+ + G+ GN+ A N +NV +Y L+ G +
Sbjct: 497 SKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + EM+ G++P+ E V E
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITYEIVKE 584
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 11/263 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS-GKVQNV 124
F S S+ ALI SL K Q + W L +K E LI+ + + V
Sbjct: 34 GFQYSTESYHALIESL----GKIKQFNVIWNLVTDMKQKGLLNKETFALISRRYARARKV 89
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ F ME G+K +S+ N L+ S V A +F+ M + + + K+Y
Sbjct: 90 KEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKM-NKRGFVADIKSYTI 148
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G+ N+ + + Y GF +V TY LI+ K+R +D + EM +
Sbjct: 149 LLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKN 208
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
PS I ++ GL A ++L F + G+ +V YC R+D+++
Sbjct: 209 CKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQ 268
Query: 305 EQLETLTKCNQSP-----EVLLH 322
++ + K P +++LH
Sbjct: 269 RTIDEMRKGGVGPSARTYDIILH 291
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 8/264 (3%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME 135
L T +S ++AQLV DKM K G + + Y L+ G+ +N+ M V+ M+
Sbjct: 115 LDTLCKSRQVERAQLVF----DKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMK 170
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+G +PD + LI A S A+ LF M ++ KP+ Y I+G + +
Sbjct: 171 DEGFEPDVVTYGILINAHCKSRRYDDAIELFHEM-EAKNCKPSPHIYCTLINGLGAEKRL 229
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+++ + A+GF TY +++ + D V R +EM G+ PS + +
Sbjct: 230 SEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDII 289
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L L K S + + G + + + + +V+ +C RVD + + +
Sbjct: 290 LHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGI 349
Query: 316 SPEVLLHFFSGIIRLYALSDRLDD 339
P ++H FS +I +LD+
Sbjct: 350 LP--VMHMFSTLINSLCHESKLDE 371
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 83/205 (40%), Gaps = 4/205 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G + + A+ F +A G P++ +N+++ A S + + M
Sbjct: 216 YCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMR 275
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+++TYD + G + G +V TYE ++
Sbjct: 276 KGG-VGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRV 334
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +++M + GI+P + + ++ LC KLD + + +L G + + L
Sbjct: 335 DMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNL 394
Query: 291 VKCYCELGRVDEL---EEQLETLTK 312
+ + G+ D + E +L+ L K
Sbjct: 395 KQNLLDEGKKDTVVVFERKLDKLRK 419
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 7/204 (3%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---D 158
+G E + Y LI K + A+ + M +G+ P FN+LI + G D
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMED 378
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V L L E S++ PN +TY+ I GF ++D + + S +V TY
Sbjct: 379 AVGVLGLME----SKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYN 434
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
+LIHG + DS R + M+ G P + LC ++ L+ L
Sbjct: 435 TLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEK 494
Query: 279 GWKINENMAQKLVKCYCELGRVDE 302
K NE+ L+ YC+ G+++
Sbjct: 495 HVKANEHAYTALIDGYCKAGKIEH 518
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 96/269 (35%), Gaps = 49/269 (18%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK+ A+ + M G P + L+CA SG + ALSLF M +P
Sbjct: 268 AGKLHE---ALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEM-RERGCEP 323
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-------------------------- 211
N TY I G +D K + G +
Sbjct: 324 NVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVL 383
Query: 212 ---------VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
NV+TY LI G + + D +M+ + P + ++ GLC
Sbjct: 384 GLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEV 443
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL----TKCNQSPE 318
+D + ++ G+ ++ + C C +GRV E + LE+L K N+
Sbjct: 444 GVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANE--- 500
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
H ++ +I Y + +++ RM
Sbjct: 501 ---HAYTALIDGYCKAGKIEHAASLFKRM 526
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + S++ + +K + + +LI +G + A SLF+ M++ EE PNS T++ I
Sbjct: 484 AHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLA-EECLPNSITFNVMI 542
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
G G V DAM A F V + TY L+ LK DFD + ++S
Sbjct: 543 DGLRKEGKVQDAM---LLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISS 599
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P++ ++ C++ +L+ + + + G ++ + L+ Y +G +D
Sbjct: 600 GYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLD 657
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 6/248 (2%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIF-AFNSSQFSWDALITSL-QSSSPKKAQL 91
S V + N LI L +V V + L + I F+ Q++++A + L + +A
Sbjct: 427 SPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQ 486
Query: 92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+LE +K +K NE Y LI K + A +F M A+ P+S FN +I
Sbjct: 487 ILESLKEKHVKANEH---AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMID 543
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G V A+ L E M + + KP TY+ + + D N+ I++G+
Sbjct: 544 GLRKEGKVQDAMLLVEDM-AKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQ 602
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
NV TY + I + + ++ + G++ I ++ LD
Sbjct: 603 PNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGV 662
Query: 272 LKFLLGGG 279
L+ + G G
Sbjct: 663 LRRMFGTG 670
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 46/293 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + ++ +G+ DS ++N LI A C G + +A + M + +P+ TY +
Sbjct: 624 AEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG-CEPSYLTYSILM 682
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR-DFDSVDRFYEEMMSLGI 245
V +K +N G V++ T S+ + + ++ DF +E+M G
Sbjct: 683 KHL-----VIEKHKKEGSN-PVGLDVSL-TNISVDNTDIWSKIDFGITTVLFEKMAECGC 735
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P++ K++ GLC +L+ S + GG +E + L+ C+LG E
Sbjct: 736 VPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVT 795
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
L+++ +C+ L H S + + L ++++ E E V C
Sbjct: 796 LLDSMMECSH----LAHLESYKLLICGLFEQMNK------------------EKAEAVFC 833
Query: 366 SYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
S RC Y + L+ G + G + ++N M+
Sbjct: 834 SLLRCG---------------YNYDEVAWKVLIDGLAKTGYVDQCSELLNLME 871
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 110/277 (39%), Gaps = 19/277 (6%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+ P+ N+++ + G++ A LF + + E P+ TY + + G+ +V
Sbjct: 182 GNSVFPNLITLNTMLNSYCKLGNMAVA-RLFFVRILRCEPGPDLFTYTSLVLGYCRNDDV 240
Query: 196 DAMNKWYAANIAAG-FSV----NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ A G F V N +Y +LIHG +A F+ M G P++
Sbjct: 241 ER---------ACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVR 291
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ LC + S + G + N L+ C+ GR+DE + L +
Sbjct: 292 TYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEM 351
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
+ +P V+ F+ +I Y ++D +G M + + + +IC + R
Sbjct: 352 VEKGVAPSVVP--FNALIGSYCKRGMMEDAVGVLGLMESKKVC-PNVRTYNELICGFCRG 408
Query: 371 AAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+ DR + L ++ TY+ L+ G G+
Sbjct: 409 KSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGV 445
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 2/145 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY I+G +G ++ Y G S + + SL+ K F
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ MM + + + ++ GL + ++ ++ LL G+ +E + L+ +
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856
Query: 297 LGRVDELEEQLETLTK--CNQSPEV 319
G VD+ E L + K C PE
Sbjct: 857 TGYVDQCSELLNLMEKNGCRLHPET 881
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 98 DKMLKGNESCLDEYA-CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D +LK N+ + Y C + K + + F M QGI+ D VFN+L+C
Sbjct: 483 DAILKFNQMINEVYGLCTVEKWEKAEELVF------EMLDQGIRLDVVVFNTLMCDLCRE 536
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G V+ A L E+M+ +P+ +Y+ + G G D K ++ G N T
Sbjct: 537 GRVMEAQRLIELMLRVG-VRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFT 595
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
Y +L+HG KAR D EM+ G P + +L GL
Sbjct: 596 YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGL 638
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 122/275 (44%), Gaps = 26/275 (9%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRL---DKMLKGNESCLDE-------YACLI 115
A +S +++ L+T++ +S + + L + + D+M++ C D+ Y+ LI
Sbjct: 146 ARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVR---ECSDKVAPDRCTYSILI 202
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---DVVTALSLFEIMVSS 172
++ + VF + G + + VFN L+ LC D T + L+ +
Sbjct: 203 GCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKG-LCDAKRLDEATNILLWRM---- 257
Query: 173 EEY--KPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSV--NVQTYESLIHGSLKA 227
E+ PN +Y+ + GF + + A+ + G S +V +Y ++I+G +
Sbjct: 258 PEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFRE 317
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + +M+ GI P + V++GLC + +DR K+ + +L G K +
Sbjct: 318 GQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTY 377
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ Y G+ E+ LE ++ + P+ ++
Sbjct: 378 NCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIY 412
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 22/196 (11%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+HV + PD +N++I G V A +LF M+ P+ TY+ I
Sbjct: 289 LHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMID-RGIPPDVVTYNTVID 347
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G VD + + G + TY LIHG L + V R EEM + + P
Sbjct: 348 GLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEP 407
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK----------INENMAQK-------- 289
I +L+ LC + ++ ++ G K I + M Q+
Sbjct: 408 DCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVN 467
Query: 290 ---LVKCYCELGRVDE 302
L+ C+LGRVD+
Sbjct: 468 YGALIDALCKLGRVDD 483
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 38/235 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ K A ++F S+ +GIKPD A+ + +C +F+ M
Sbjct: 412 YALLLDYLCKNGRCTEARNIFDSVIRKGIKPD-AMIDEAVC-------------IFDKM- 456
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD-----------------AMNKWYAAN------IA 207
+ PN Y A I LG VD + KW A +
Sbjct: 457 RQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLD 516
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G ++V + +L+ + R E M+ +G+ P + +++G C + D
Sbjct: 517 QGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDE 576
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L ++ G K NE L+ YC+ R+D+ L + +P+V+ +
Sbjct: 577 AAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTY 631
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 136/317 (42%), Gaps = 23/317 (7%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------SGDVVTALS 164
A L L G + V A F S + + PD FN++I LC +GDV +
Sbjct: 161 ALLAGLVG-AKRVDLAEKAFRSALRRRVSPDIYTFNTVISG-LCRIGQLRKAGDVAKDIK 218
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ + P+ TY++ I G+ GN+ ++ + AG S T+ LI
Sbjct: 219 AWGL-------APSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+G K + + R +EEM GI S+ ++ GLC+ K++ ++ + G
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
NE ++K +C+ G + + + ++ +T+ N P+V+++ +I Y +++D
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTI--LIDGYRRLGKMEDAM 389
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAG 400
M K+G+S + +I + R + LD +K + TY+ L+
Sbjct: 390 AVKEAMAKKGIS-PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGA 448
Query: 401 YRRAGLSGKLDSVINEM 417
G K +++EM
Sbjct: 449 LCCKGEVRKAVKLLDEM 465
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 39/269 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM- 169
+ LI K N A+ VF M+ QGI +NSLI G V + L E M
Sbjct: 267 FGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEME 326
Query: 170 ---------------------------------VSSEEYKPNSKTYDAFISGFSSLGNVD 196
++ +P+ Y I G+ LG ++
Sbjct: 327 DLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKME 386
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A G S NV TY LI G ++ D+ S +EM GI + ++
Sbjct: 387 DAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
LC + ++ + L + G + N +++ +C+ G + E + KC +
Sbjct: 447 GALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKR 506
Query: 317 PEVL-----LHFFSGIIRLYALSDRLDDV 340
V+ + +F I ++ +D L+++
Sbjct: 507 ANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y CLI + + A + M+ +GI+ D +N LI A C G+V
Sbjct: 398 KGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRK 457
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + M S +PN TY+ I GF GN+ + + NV TY I
Sbjct: 458 AVKLLDEM-SEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ D + EM+ ++P+ E + EG+
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 9/249 (3%)
Query: 36 SVSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVL 93
SV+S NPL+S L++V + ++ + + S++ +I L + KA ++
Sbjct: 127 SVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDII 186
Query: 94 EWRLDKMLKGNESCLDEYACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
E D ++G + + Y LI GK+ + A + M A GI P+ FN LI
Sbjct: 187 E---DMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILI 243
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
+V A+ +F M + + KPN TY++ I+G + G V+ + +
Sbjct: 244 DGFCKDKNVSAAMKVFAEM-NRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCL 302
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N+ T+ +L++G K + +++M GI P++ +++ C ++ +
Sbjct: 303 KPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFA 362
Query: 271 FLKFLLGGG 279
+ +LG G
Sbjct: 363 LYRIMLGKG 371
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 117/293 (39%), Gaps = 44/293 (15%)
Query: 99 KMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
K ++ + C +E I + G K +NV AM VF M QG+KP+ +NSLI +
Sbjct: 225 KEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNN 284
Query: 157 GDVVTALSLFEIMVSS----------------------------------EEYKPNSKTY 182
G V A +L + MV+S + PN TY
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I + N++ Y + G +V TY LI G + D ++ EM +
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD- 301
+ + +++ LC + ++ + L + G K ++ ++ YC+ G +
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRA 464
Query: 302 --ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L Q+E + + + ++ +I+ + D+L+D + M ++GL
Sbjct: 465 ALNLRSQMEKVGRLAN-----VATYNVLIKGFCKKDKLEDANGLLNEMLEKGL 512
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 95 WRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ L +++ G C D Y CLIA + ++ A ++ + M+ + +K D +N LI +
Sbjct: 361 FALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDS 420
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++ AL L + M + KP+ TY+ I G+ GN+ A + G
Sbjct: 421 LCNKGEMKKALRLLDEMCR-KGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLA 479
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
NV TY LI G K + + EM+ G+IP+ E V E
Sbjct: 480 NVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFEIM 169
I ++G KV + A + M+ +G+ + +N+LI C G + A ++ + M
Sbjct: 168 IVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEM 227
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ PN T++ I GF NV A K +A G NV TY SLI+G
Sbjct: 228 -RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGK 286
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ ++M++ + P+I +L G C + + + + G N
Sbjct: 287 VNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346
Query: 290 LVKCYCE 296
L+ YC+
Sbjct: 347 LIDAYCK 353
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +N+ A ++ M +G+ PD + +N LI GD+ A +L M
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEM- 402
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ K + TY+ I + G + + G + TY ++I G K +
Sbjct: 403 DTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNL 462
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M +G + ++ +++G C + KL+ L +L G N + +
Sbjct: 463 RAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522
Query: 291 VKCYCELGRVDELEEQL 307
+ E G V ++E L
Sbjct: 523 TEEMMEKGFVPDIEGHL 539
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 4/200 (2%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
F G+K N L+ + G++ +++ M+ +P +++
Sbjct: 111 LGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIR-RRIEPTLISFNIV 169
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV---DRFYEEMMS 242
I+G +G ++ G S NV TY +LI G K + D +EM +
Sbjct: 170 INGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRA 229
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P+ +++G C + + + G K N L+ C G+V+E
Sbjct: 230 DGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE 289
Query: 303 LEEQLETLTKCNQSPEVLLH 322
+ + P ++ H
Sbjct: 290 ATALRDQMVNSCLKPNIITH 309
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 3/218 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACL 154
LD+M++ G + Y + K+ + A+++ ME IKP+ +++++I
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + +LF I + + PN TY+ I GF G A + + S NV
Sbjct: 265 KDGRHSDSHNLF-IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ G + L+ YC R+D+ E L + +
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M +G+ ++ +N+LI GD+ AL L + M+SS P+ T + +
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLL 470
Query: 187 SGFSSLGNV-DAMNKWYAANIAA----------GFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A + G +V TY LI G + F +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 530
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 590
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 591 KAGRVDD 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++F M+ +GI P+ +N +I SG A L + M+ + PN TY+A I+
Sbjct: 274 NLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE-RKISPNVVTYNALINA 332
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G + Y + G N TY S+I G K D+ + + M + G P
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++G C +++D L + G N L+ +C +G ++ + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 309 TLTKCNQSPEVL 320
+ P+++
Sbjct: 453 QMISSGVCPDIV 464
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI PD+ ++S+I LC + + + + S+ + PN T++ I
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ G VD + + G + Y +LI+G K + + ++EM+S G+
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 646
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P + +L G ++ +L+R + L+ L
Sbjct: 647 PDTITIRNMLTGFWSKEELERAVAMLEDL 675
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 129/338 (38%), Gaps = 44/338 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CL--------------C 155
+ LI +PFA+ F + G+ PD F +L+ CL C
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC 178
Query: 156 SGDVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAM 198
DV+T A++L + MV + +P+ TY F+ G +G+ V A+
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVEN-GLQPDQITYGTFVDGMCKMGDTVSAL 237
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
N + NV Y ++I G K R DS + F EM GI P+I ++
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFI-EMQDKGIFPNIVTYNCMIG 296
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C + + L+ +L N L+ + + G+ E E + + P
Sbjct: 297 GFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP 356
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY---D 374
+ ++ +I + DRLD E M +G S +I Y C A D
Sbjct: 357 NTIT--YNSMIDGFCKQDRLDAAEDMFYLMATKGCS-PDVFTFTTLIDGY--CGAKRIDD 411
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLD 411
++L + + TY+ L+ G+ G L+ LD
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 19/373 (5%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ Q L + F + +S++ LI L K L + R+ + +G + + Y
Sbjct: 173 IRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRM--ISEGLKPSMKTY 230
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+ L+ G+ ++ M + ME G++P+ + I +G + A + + M
Sbjct: 231 SALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTM-E 289
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
E P+ TY I + G +D + Y A+ ++ TY +L+ D +
Sbjct: 290 DEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLE 349
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+V RF+ EM + G P + ++E LC K+D+ L + G N + L+
Sbjct: 350 TVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI 409
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG---RMG 348
L R+DE E + +P + I Y +L D E ++ +M
Sbjct: 410 SGLLNLRRLDEALELFNNMESLGVAPTAYSYVL--FIDYYG---KLGDPEKALDTFEKMK 464
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDRL----DLFLDHIKGSYKLRRATYDFLVAGYRRA 404
K+G+ + S + A R+ D+F D TY+ ++ Y +A
Sbjct: 465 KRGI----MPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKA 520
Query: 405 GLSGKLDSVINEM 417
G K ++ EM
Sbjct: 521 GQIDKATKLLTEM 533
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L++ G ++ ++ MEA G PD + L+ A SG V A + ++M
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM- 393
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY+ ISG +L +D + + + G + +Y I K D
Sbjct: 394 RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDP 453
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+M GI+PSI L L ++ K + G + +
Sbjct: 454 EKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMM 513
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+KCY + G++D+ + L + P++++ + +I + R+D+ GR+
Sbjct: 514 MKCYSKAGQIDKATKLLTEMLSEGCEPDIIV--VNSLIDTLYKAGRVDEAWQMFGRL 568
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 99 KMLK-GNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+M+K G L Y L+ ++G+V + A+H F ++ G+ PD+ +N +I
Sbjct: 953 RMIKEGIRPDLKSYTILVECLFMTGRVDD---AVHYFEELKLTGLDPDTVSYNLMINGLG 1009
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
S + ALSLF M + P TY+A I F + G VD K + G NV
Sbjct: 1010 KSRRLEEALSLFSEM-KNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNV 1068
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
TY +LI G K+ + D +++MM +G P+
Sbjct: 1069 FTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 109/267 (40%), Gaps = 5/267 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
F+++ L+ + S K+ + E + + +G + + + +I+ K ++ A+ ++
Sbjct: 824 FTYNLLLDAHGKS--KRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+ + P + LI L +G A+ +FE M + KPN Y+ I+GF
Sbjct: 882 YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM-PDYQCKPNCAIYNILINGFGK 940
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
GNV+ + I G ++++Y L+ D ++EE+ G+ P
Sbjct: 941 AGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GL R+L+ S + G L+ + G VD+ + E L
Sbjct: 1001 YNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQ 1060
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLD 338
P V ++ +IR ++ S D
Sbjct: 1061 FMGLEPNVFT--YNALIRGHSKSGNKD 1085
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 6/229 (2%)
Query: 67 FNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F+ + ++ LI L ++ ++A + E D K N + Y LI GK NV
Sbjct: 889 FSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAI---YNILINGFGKAGNVN 945
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F M +GI+PD + L+ +G V A+ FE + + P++ +Y+
Sbjct: 946 IACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG-LDPDTVSYNLM 1004
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G ++ ++ G S + TY +LI A D + +EE+ +G+
Sbjct: 1005 INGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGL 1064
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVKC 293
P++ ++ G DR S K ++ G N AQ KC
Sbjct: 1065 EPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I GK+ + A+ F M+ +GI P A N+ + + G + A +F +
Sbjct: 440 YVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFND-I 498
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+S TY+ + +S G +D K ++ G ++ SLI KA
Sbjct: 499 HNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRV 558
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + + L + P++ ++ GL KL + + G N L
Sbjct: 559 DEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNAL 618
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C C+ VD + +T N SP+VL +
Sbjct: 619 LDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 4/196 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A +F ++ + P +N LI G ++ AL LF M S PN+
Sbjct: 554 KAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG-CPPNT 612
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++A + VD K + S +V TY ++I+G +K FY +
Sbjct: 613 VTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQ 672
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M + P L +L G+ ++ D +K ++F+ G + + + +L++C
Sbjct: 673 MKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEA 731
Query: 299 RVDELEEQLETLTKCN 314
++E E L CN
Sbjct: 732 EIEEAISFAEGLV-CN 746
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 15/190 (7%)
Query: 148 SLICACLCSGD---------------VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
L+C +C D + A LF+ S P ++Y+ + G
Sbjct: 742 GLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGC 801
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+A K + AG N+ TY L+ K++ D + Y EM+ G P+I
Sbjct: 802 NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITH 861
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ L +++ ++ G + L+ + GR +E + E +
Sbjct: 862 NIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPD 921
Query: 313 CNQSPEVLLH 322
P ++
Sbjct: 922 YQCKPNCAIY 931
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 57/145 (39%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY S G + AGF +N +Y LI+ L+ + Y
Sbjct: 156 NPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVY 215
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ M+S G+ PS+ ++ L RR + L+ + G + N ++
Sbjct: 216 KRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRA 275
Query: 298 GRVDELEEQLETLTKCNQSPEVLLH 322
GR+D+ L+T+ P+V+ +
Sbjct: 276 GRIDDAYGILKTMEDEGCGPDVVTY 300
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 135/328 (41%), Gaps = 6/328 (1%)
Query: 95 WRLDKMLKGNE---SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
W++ ++++ E + L Y L+ + K + A +VF + ++P +A+F +L+
Sbjct: 18 WQVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLT 77
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
S AL +FE M E P+ TY A I G G K + + G
Sbjct: 78 VFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVK 137
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++ TY LIHG KA F V+R M + + P ++ K+ ++
Sbjct: 138 PSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQA 197
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ LL G + + L+ Y G +++E + + + N + ++ I+ Y
Sbjct: 198 YEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRIT--YNIIMEAY 255
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
+ +D +E + RM + + S+ M + +Y R + ++ + +
Sbjct: 256 GRAGMVDQMEETWKRMKAEFVKPNSSTFCSM-LSAYGRHGYWHNVEKVMRQARYFDAADT 314
Query: 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419
A Y+ + ++RA ++ + EMK
Sbjct: 315 AVYNAAIDAFQRAQNFEDMEKIFEEMKL 342
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
V + D + + S++ LI S K + +RL +++ C D +
Sbjct: 158 VGSARLVFDEIPKRGLRPTVVSFNTLI----SGCCKAGAVEEGFRLKGVMESERVCPDVF 213
Query: 112 ACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++G K + +F M +G+ P+ F LI G V AL F++M
Sbjct: 214 TFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMM 273
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ + +P+ TY+A I+G +G++ + A+G + T+ +LI G K D
Sbjct: 274 LA-QGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGD 332
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+S M+ GI ++ GLC ++ + L+ +L G+K ++
Sbjct: 333 MESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTM 392
Query: 290 LVKCYCELGRV 300
+V C+C+ G V
Sbjct: 393 VVDCFCKKGNV 403
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 4/189 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV V A VF + +G++P FN+LI C +G V L +M SE P+
Sbjct: 154 KVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVM-ESERVCPDV 212
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T+ A I+G G +D + + G N T+ LI G K D + ++
Sbjct: 213 FTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQM 272
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G+ P + ++ GLC L + + + G + + L+ C+ G
Sbjct: 273 MLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYG- 331
Query: 300 VDELEEQLE 308
++E LE
Sbjct: 332 --DMESALE 338
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV ++ A + M A G++PD F +LI C GD+ +AL + MV
Sbjct: 285 YNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMV 344
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + + ISG G V + ++AGF + TY ++ K +
Sbjct: 345 E-EGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNV 403
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ +EM S G +P + ++ GLC + ++ K L +L G N+
Sbjct: 404 XMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPND 457
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 108 LDEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALS 164
LD+ A + +SG ++ V A + M + G KPD + +++ C C G+V
Sbjct: 350 LDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTY-TMVVDCFCKKGNVXMGFK 408
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
L + M S+ + P TY+A ++G G V A + G + N TY L+ G
Sbjct: 409 LLKEM-QSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGH 467
Query: 225 LKARDFDSVDRFYEE 239
K VD F E
Sbjct: 468 SKHGSSVDVDIFNSE 482
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
F + V Y PN ++ + GF +G V + + G V ++ +LI G
Sbjct: 129 FYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCC 188
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
KA + R M S + P + ++ GLC +LD + G G N
Sbjct: 189 KAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGV 248
Query: 286 MAQKLVKCYCELGRVD 301
L+ C+ G+VD
Sbjct: 249 TFTVLIDGQCKGGKVD 264
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L K+ V A+ V ME GIK + ++ LI L D A ++FE ++
Sbjct: 489 YGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLI 548
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ Y+ I+ F +G +D +T+ +IHG + +
Sbjct: 549 K-DGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEM 607
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +RK+++ + L + G NE+ +
Sbjct: 608 KKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTI 667
Query: 291 VKCYCELG 298
+ Y LG
Sbjct: 668 MHGYASLG 675
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 9/321 (2%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G + + Y+ LI K+++ A +F + GIKPD ++N++I A G + A
Sbjct: 516 GIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRA 575
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
+ + M + +KP ++T+ I GF+ G + + +G V TY +LI
Sbjct: 576 VCTVKEM-QKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALIL 634
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G ++ R + ++ +EM G+ P+ ++ G + + ++ L G ++
Sbjct: 635 GLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQL 694
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342
+ + L+K C+ GR+ + +TK + + + F I + + R D E
Sbjct: 695 DVYTYEALLKACCKSGRM----QSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEA 750
Query: 343 S--VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVA 399
+ + +M ++G+ I + + R ++ +K K TY L+
Sbjct: 751 ADLMQQMKREGVQ-PDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLIN 809
Query: 400 GYRRAGLSGKLDSVINEMKFA 420
G+ RA L K S EMK +
Sbjct: 810 GWARASLPEKALSCFEEMKLS 830
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EY ++ + ++ A F M A+GI+P S V+ +LI A D+ ALS M
Sbjct: 313 EYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKM 372
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY +SGF+ GN ++ + W+ S+N Y ++I+ + +
Sbjct: 373 -KEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCN 431
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
D + EM GI I I +++G
Sbjct: 432 MDKAEALVREMEEEGIDAPIDIYHTMMDG 460
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M AQ I ++ ++N LI GD+ A L + M E +P
Sbjct: 709 SGRMQS---ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQM-KREGVQP 764
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FI+ S G++ K + G NV+TY +LI+G +A + +
Sbjct: 765 DIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCF 824
Query: 238 EEMMSLGIIPSIPILEKVLEGLCAR 262
EEM G+ P + ++ L +R
Sbjct: 825 EEMKLSGLKPDRAVYHCLMTSLLSR 849
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A + ME +GI ++++++ GD L +FE P+ TY
Sbjct: 431 NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECG-LNPSVITY 489
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I+ ++ LG V + AG N++TY LI+G LK +D+ + +E+++
Sbjct: 490 GCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIK 549
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRV 268
GI P + + ++ C K+DR
Sbjct: 550 DGIKPDVVLYNNIITAFCGMGKMDRA 575
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + +SM ++G PD + SLI C +G + A LF+ ++ E+ + ++ Y+
Sbjct: 237 LAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVL 296
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G V+ + A + G +QTY +LI G KA + D + + M G
Sbjct: 297 IEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGF 356
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLK 273
P+ I ++GLC K++ F +
Sbjct: 357 SPNTMIYSTFIDGLCKVGKINEAHEFFQ 384
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 99 KMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
++L+G ++ LD Y LI + V A+ V M +G P +N+LI +
Sbjct: 279 EVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKA 338
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+V AL LF M + + PN+ Y FI G +G ++ ++++ ++ G + T
Sbjct: 339 NEVDKALQLFRAM-EEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVT 397
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGII 246
Y +LI G A D R Y EM G I
Sbjct: 398 YNALIRGLFGANRMDEAHRLYREMGERGYI 427
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 2/180 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ V +F +E+ G+ +N+++ A +CSGD +I V P+
Sbjct: 57 EMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSL-PHV 115
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y + G ++ I + TY +LI K D + ++
Sbjct: 116 LAYKTMLDCLIKTGKTREASEVVGEMIKKSVP-DGMTYTALISVLCKHNRADDAMKVFDI 174
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ I+P++ + +L C RKLD ++ G+ + + L++C C GR
Sbjct: 175 MVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGR 234
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 5/264 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ ++ + A+ + M+ QG+ P S N ++ + G + A ++F+ M S
Sbjct: 152 CMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEM-SV 210
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S +Y + G G + ++W I GF + T ++ + +
Sbjct: 211 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 270
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +M+ LG P++ +++GLC + + + L+ ++ GWK N L+
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 330
Query: 293 CYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G ++ L + + P V H ++ +I Y D+L+ E RM +QG
Sbjct: 331 GLCKRGWTEKAFRLFLKLVRSDTYKPNV--HTYTSMIGGYCKEDKLNRAEMLFSRMKEQG 388
Query: 352 LSFKSAEDVEMVICSYFRCAAYDR 375
L F + +I + + ++ R
Sbjct: 389 L-FPNVNTYTTLINGHCKAGSFGR 411
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 4/208 (1%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C + L+ +N V A+ F M G KP+ F SLI G + A +
Sbjct: 251 DNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEML 310
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSL 225
E MV + +KPN T+ A I G G + + + + + + NV TY S+I G
Sbjct: 311 EEMVRNG-WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 369
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + + + M G+ P++ ++ G C R + + G+ N
Sbjct: 370 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 429
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKC 313
+ C+ R E E L C
Sbjct: 430 TYNAAIDSLCKKSRAPEAYELLNKAFSC 457
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W KM+ G + L + LI K ++ A + M G KP+ +LI
Sbjct: 273 WYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 332
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V S+ YKPN TY + I G+ ++ ++ G N
Sbjct: 333 CKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPN 392
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
V TY +LI+G KA F M G +P+I ++ LC + +
Sbjct: 393 VNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 443
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A +F+ M+ QG+ P+ + +LI +G A L +M
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM- 419
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I + + G + TY LI K D
Sbjct: 420 GDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDI 479
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+ M G + + ++ C ++K+ + + ++ G + +
Sbjct: 480 NQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSM 539
Query: 291 VKCYCELGRVD 301
+ CYC+ G +D
Sbjct: 540 ISCYCKEGDID 550
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 1/177 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K P A + + G++ D + LI D+ AL+ F M + ++ +
Sbjct: 440 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM-NKTGFEADM 498
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ + I+ F + + + ++ G +TY S+I K D D +++
Sbjct: 499 RLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHN 558
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M G +P ++ GLC + +D + ++ G E L YC+
Sbjct: 559 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 615
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 6/164 (3%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSS 172
LIA + + + + +F + + G+ P + S+I +C C GD+ AL F M
Sbjct: 504 LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMI-SCYCKEGDIDLALKYFHNM-KR 561
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S TY + ISG VD K Y A I G S T +L + K D +
Sbjct: 562 HGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSAN 621
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
E + I ++ L + LC+ +K+ F + LL
Sbjct: 622 AMILLEPLDKKLWIRTVRTL---VRKLCSEKKVGVAALFFQKLL 662
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 3/218 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA-QGIKPDSAVFNSLICACL 154
LD+M++ G + Y + K+ + A+++ ME IKP+ +++++I
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLC 264
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + +LF I + + PN TY+ I GF G A + + S NV
Sbjct: 265 KDGRHSDSHNLF-IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNV 323
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 324 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 383
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ G + L+ YC R+D+ E L + +
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M +G+ ++ +N+LI GD+ AL L + M+SS P+ T + +
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLL 470
Query: 187 SGFSSLGNV-DAMNKWYAANIAA----------GFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A + G +V TY LI G + F +
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 530
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 590
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 591 KAGRVDD 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++F M+ +GI P+ +N +I SG A L + M+ + PN TY+A I+
Sbjct: 274 NLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE-RKISPNVVTYNALINA 332
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F G + Y + G N TY S+I G K D+ + + M + G P
Sbjct: 333 FVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++G C +++D L + G N L+ +C +G ++ + +
Sbjct: 393 VFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQ 452
Query: 309 TLTKCNQSPEVL 320
+ P+++
Sbjct: 453 QMISSGVCPDIV 464
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI PD+ ++S+I LC + + + + S+ + PN T++ I
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ G VD + + G + Y +LI+G K + + ++EM+S G+
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 646
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P + +L G ++ +L+R + L+ L
Sbjct: 647 PDTITIRNMLTGFWSKEELERAVAMLEDL 675
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 129/338 (38%), Gaps = 44/338 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CL--------------C 155
+ LI +PFA+ F + G+ PD F +L+ CL C
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQIC 178
Query: 156 SGDVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAM 198
DV+T A++L + MV + +P+ TY F+ G +G+ V A+
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVEN-GLQPDQITYGTFVDGMCKMGDTVSAL 237
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
N + NV Y ++I G K R DS + F EM GI P+I ++
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFI-EMQDKGIFPNIVTYNCMIG 296
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
G C + + L+ +L N L+ + + G+ E E + + P
Sbjct: 297 GFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIP 356
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY---D 374
+ ++ +I + DRLD E M +G S +I Y C A D
Sbjct: 357 NTIT--YNSMIDGFCKQDRLDAAEDMFYLMATKGCS-PDVFTFTTLIDGY--CGAKRIDD 411
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAG-LSGKLD 411
++L + + TY+ L+ G+ G L+ LD
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 130/343 (37%), Gaps = 8/343 (2%)
Query: 78 ITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSME 135
+ L ++ ++ L L L + K ++ LD AC + G + +V A VF M
Sbjct: 9 VRRLSAAGEVRSALAL---LARGAKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMP 65
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
G+ P+ F +LI G L+LFE M +PN TY+ + + G
Sbjct: 66 RLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGG-IEPNLYTYNILVGEWCRTGEF 124
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ + A G + NV +Y +LI G + R + E M GI PS+ +
Sbjct: 125 ERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLL 184
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G K+ F + G++ + L+ +C + + +
Sbjct: 185 VDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGL 244
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
+P + + +I +A + +D M K GL +V D
Sbjct: 245 APTKVTYTI--LIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDA 302
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + ++ YD L+ GY R G S K +I EM+
Sbjct: 303 RKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMR 345
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 36/215 (16%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK + A+H M G +P + +N+LI + D++ A F M P
Sbjct: 189 GKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDM-KERGLAPT 247
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH-----GSLK-ARD-FD 231
TY I F+ ++D + +A AG V+V+TY L+H G++K AR F
Sbjct: 248 KVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQ 307
Query: 232 SVD----------------------------RFYEEMMSLGIIPSIPILEKVLEGLCARR 263
S+ + EM G +P+ + LC
Sbjct: 308 SIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDG 367
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
K ++ + ++ G + +E++ Q L+ G
Sbjct: 368 KCSEAEALIDDMVRAGVQTSESVRQVLLNAKARQG 402
>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
gi|238006488|gb|ACR34279.1| unknown [Zea mays]
gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
Length = 462
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 4/200 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+A +V + + V M G++PD+ +NSLI SG V AL LF+ M+
Sbjct: 50 YNTLLAAYCRVDGLDAGLAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEML 109
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+S +Y+A + G+ + + +A G + TY +L+ G LKA
Sbjct: 110 RS-GVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADRGVAPCATTYNTLLDGLLKAGHV 168
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R + + G+ I ++ GLC K+ + LK L N +
Sbjct: 169 TNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTV 228
Query: 291 VKCYCELGRVDELEEQLETL 310
+KC GR E+ LET
Sbjct: 229 MKCCFRYGR---FEQGLETF 245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 107/260 (41%), Gaps = 11/260 (4%)
Query: 58 TLDSVDIF------AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
T+ ++D+F +S++AL+ L +S P+ A V D +G C
Sbjct: 98 TVRALDLFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFA---DMADRGVAPCATT 154
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K +V A +F ++ G+ +N++I SG V A + + +
Sbjct: 155 YNTLLDGLLKAGHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKEL- 213
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E+ PN+ TY + G + + + + + G+ + Y ++I +K
Sbjct: 214 GRTEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRM 273
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + E M+ G ++ C K++ L + GG + +E L
Sbjct: 274 QEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEEGGLESDEYTFSIL 333
Query: 291 VKCYCELGRVDELEEQLETL 310
V C++G+++ E+Q+ ++
Sbjct: 334 VNGLCKMGQIEAAEKQIWSM 353
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 79/186 (42%), Gaps = 3/186 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVD 196
G+ PD +N+L+ A C D + A + +P++ TY++ I+G G V
Sbjct: 42 GLPPDVVTYNTLLAA-YCRVDGLDAGLAVVHRMREAGVRPDAVTYNSLITGADRSGLTVR 100
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A++ + + +G + + +Y +L+H ++ + R + +M G+ P +L
Sbjct: 101 ALD-LFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADRGVAPCATTYNTLL 159
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+GL + ++L G + ++ C+ G+V L+ L + +
Sbjct: 160 DGLLKAGHVTNAFRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHA 219
Query: 317 PEVLLH 322
P + +
Sbjct: 220 PNAVTY 225
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 3/218 (1%)
Query: 95 WRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W+L D + KG + +I + V + M PD FN LI A
Sbjct: 232 WKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINA 291
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
C G A+ +MV S +P+ T+ + GNV K + G +
Sbjct: 292 CCIGGRTWVAIDWLHLMVRSG-VEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAP 350
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N Y +L+ G KAR+ YEEM + G+ P ++ G +++ L
Sbjct: 351 NAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLL 410
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
K L+ G ++ ++ +V C GR+DE + L+ L
Sbjct: 411 KDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQEL 448
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G++P A F +++ A G+VV A LF+ + PN+ Y+ + G+
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGNVVEARKLFD-GIQDMGIAPNAAIYNTLMDGYFKAR 366
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V + Y G S + T+ L+ G K + DR ++++ G+ + +
Sbjct: 367 EVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYD 426
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ LC +LD L+ LL G ++ L+ Y G D+ E + +C
Sbjct: 427 VMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRC 486
Query: 314 NQSP 317
+P
Sbjct: 487 GFTP 490
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K NV A VF M A G P++ +NSLI G V AL L E +
Sbjct: 565 FTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKL-EKEM 623
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ ++ T++ I GF G + + + G ++ T+ LI G KA D
Sbjct: 624 RQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDM 683
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+M S G+ P I + G C RK+++ L L+ G
Sbjct: 684 VGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAG 732
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 12/290 (4%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F S + ++L+ L + ++A+++L L+K N+ Y L+ K+ N+
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVA---YTVLLDGYFKMNNL 543
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A ++ M+ +GI PD+ F +LI +G+V A +F + +S+ + PN+ Y++
Sbjct: 544 EGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVF-LEMSAIGFVPNNFAYNS 602
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I G G V K G + T+ +I G + + +M +G
Sbjct: 603 LIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIG 662
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++P I ++ G C + + + G + + YC + ++++
Sbjct: 663 LLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAV 722
Query: 305 EQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L+ L P+ + + SGI SD LD ++ K G
Sbjct: 723 IILDQLISAGIVPDTVTYNTMLSGIC-----SDILDRAMILTAKLLKMGF 767
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 1/182 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A ++ M G+ PD FN L+ G + + L + ++ S + +S
Sbjct: 364 KAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFL-DS 422
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
YD +S G +D K + G +++V + SLI +A D Y
Sbjct: 423 SLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRI 482
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G PS +L GLC + L + L +L G+ IN+ L+ Y ++
Sbjct: 483 MVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNN 542
Query: 300 VD 301
++
Sbjct: 543 LE 544
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + + +G+ FNSLI A +G A + IMV + P+S T ++ +
Sbjct: 441 AMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCG-FTPSSSTCNSLL 499
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + GF +N Y L+ G K + + ++EM GI
Sbjct: 500 MGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIY 559
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE---L 303
P +++GL ++ + G+ N L++ C+ GRV E L
Sbjct: 560 PDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKL 619
Query: 304 EEQLE 308
E+++
Sbjct: 620 EKEMR 624
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EY ++ + ++ A F SM+A+GI+P S V++SLI A D+ AL M
Sbjct: 276 EYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKM 335
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + TY + GF+ +G DA + W+ S+N TY S+I+ + +
Sbjct: 336 -KEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQTCN 394
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
D + EM GI I I +++G
Sbjct: 395 MDRAEALVREMEVQGIDAPIDIYHTMMDG 423
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L K+ V A+ + M+ GIK + ++ LI L D A S+FE
Sbjct: 452 YGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDF- 510
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + KP+ Y+ I+ F + N+D + +T+ +IHG +A +
Sbjct: 511 TKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEM 570
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +RK+ + + L + G NE+ L
Sbjct: 571 RRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTL 630
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
++ Y LG ++ + L N+ E+ ++ + +++ S R+
Sbjct: 631 MQGYASLGDTEKAFQYFSVLR--NEGLEIDVYTYEALLKSCCKSGRM 675
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 142/334 (42%), Gaps = 17/334 (5%)
Query: 96 RLDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
++ KM+K G + + Y+ LI K+++ A VF G+KPD ++N++I A
Sbjct: 470 QISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAF 529
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
++ A+ + + M E Y+P ++T+ I GF+ G + + + +G
Sbjct: 530 CGMSNMDRAICMVKQM-QKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPT 588
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY +LI G ++ R ++M G+ P+ +++G + ++ +
Sbjct: 589 VHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFS 648
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
L G +I+ + L+K C+ GR+ + +TK + + + F I +
Sbjct: 649 VLRNEGLEIDVYTYEALLKSCCKSGRM----QSALAVTKEMSAKNIPRNTFVYNILIDGW 704
Query: 334 SDRLDDVEYS--VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG----SY 387
+ R D E + + +M K+G+ D+ C + + I+
Sbjct: 705 ARRGDVWEAADLMQQMRKEGV----LPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGI 760
Query: 388 KLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
K TY L+ G+ RA + K S EMK AE
Sbjct: 761 KPNLKTYTTLINGWARASMPEKALSCFEEMKLAE 794
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 9/265 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY---KPNSKTYD 183
A + M QG+ P+ FN+ I A +G V+ A +F+ M ++ +P+ T+D
Sbjct: 226 AERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFD 285
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+SGF G VD GF V++Y + G ++ EM
Sbjct: 286 VMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHE 345
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI P+ ++ GLC K + F+ G + L+ YC G +
Sbjct: 346 GIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAA 405
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
L+ + + +P ++ +++ + R + E + RM ++G S +A ++
Sbjct: 406 NRILDEMAQKGCAPNSFT--YNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTA-GCNII 462
Query: 364 ICSYFRCAAYDRLDLFLDHIKGSYK 388
I R + RLD+ +D + G ++
Sbjct: 463 IDGLCRNS---RLDVAMDIVDGMWE 484
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 34/255 (13%)
Query: 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN--VPF 126
+ F+++ L+ SL ++ +A+ +LE R+++ KG LD C I + G +N +
Sbjct: 420 NSFTYNVLLQSLWRAGRTTEAERLLE-RMNE--KGYS--LDTAGCNIIIDGLCRNSRLDV 474
Query: 127 AMHVFTSMEAQGIK-----------------------PDSAVFNSLICACLCSGDVVTAL 163
AM + M +G PD ++ LI A G A
Sbjct: 475 AMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAK 534
Query: 164 S-LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L E++V ++ P+S YD FI G+ G K G + + +TY LI
Sbjct: 535 KKLLEMIV--KDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIR 592
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
G + + + + EM GI P++ +++ C + +++ L +L
Sbjct: 593 GFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVP 652
Query: 283 NENMAQKLVKCYCEL 297
N L+K YC++
Sbjct: 653 NITSFDLLIKAYCKI 667
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGF 189
F + A G +PD+ +N ++ AC+ +GD+ AL++ M SE P++ +Y+ I+G
Sbjct: 145 FGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGL 204
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G K + + G + N TY ++I G +K D ++ R ++M+ G P++
Sbjct: 205 WRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNV 264
Query: 250 PILEKVLEGLCARRKLDRVKSFL 272
+L GLC ++D ++ +
Sbjct: 265 VTYNVLLSGLCRTGRMDETRALM 287
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 14/322 (4%)
Query: 36 SVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+V + N L+S L + + + + +D + + F++ L L + ++Q +L
Sbjct: 263 NVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTG--ESQTMLS 320
Query: 95 WRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + KG L Y C I L+G K V A VF + G+ P + ++N+LI
Sbjct: 321 LFAESLKKG--VMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLING 378
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
D+ A +FE M S +P+ TY+A I+G L V +G
Sbjct: 379 YCQVRDLRGAFCIFEQM-KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDP 437
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+V+T+ +LI A + +M GI + V++ C K+ + L
Sbjct: 438 SVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAIL 497
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRL 330
++ N + ++ Y E G ++ +E + S ++ + G+ R
Sbjct: 498 DDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCR- 556
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
S ++D+ E + + QGL
Sbjct: 557 ---SSQIDEAEELIYTLRNQGL 575
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 120/295 (40%), Gaps = 39/295 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V+++ A +F M+++ I+PD +N+LI LC ++VT + +
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING-LCKLEMVTKAEDLVMEM 430
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV--------DAMNKWYAANIAAGFSV---------- 212
P+ +T++ I + + G + D K +++ + SV
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 490
Query: 213 -----------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
N Q Y S+I +++ D + E+M + G+ SI +
Sbjct: 491 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLL 550
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
L+GLC ++D + + L G + + ++ C G D+ E L+ + K
Sbjct: 551 LKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGI 610
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P L ++ A + R+ D+E +M + + S+ +++ +Y RC
Sbjct: 611 RPT--LRTCHTLVSALASAGRVHDMECLYQQMLHKNVE-PSSSIYGIMVDAYVRC 662
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/356 (19%), Positives = 134/356 (37%), Gaps = 45/356 (12%)
Query: 36 SVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
S+SS N L+ LL V + ++ + F+W+ ++ + ++ L +
Sbjct: 121 SLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAML 180
Query: 95 WRLDKMLKGNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
R+ + Y +IA SGK + A+ VF M G+ P+ +N++I
Sbjct: 181 RRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSD---ALKVFDEMVDMGVAPNRITYNTMID 237
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--------------- 196
+ GD+ L + M+ + KPN TY+ +SG G +D
Sbjct: 238 GHVKGGDLEAGFRLRDQMLH-DGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSML 296
Query: 197 --------------------AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
M +A ++ G + T L++G K +
Sbjct: 297 PDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQV 356
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+E ++ G++P+ I ++ G C R L + + + + L+ C+
Sbjct: 357 FEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L V + E+ + + K P V F+ +I Y + +L+ + M ++G+
Sbjct: 417 LEMVTKAEDLVMEMEKSGVDPSV--ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 128/312 (41%), Gaps = 8/312 (2%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI++ K + A + A G+ P+ ++ S+I A G V AL +F+
Sbjct: 427 LQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFK 486
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ E +PN+ TY + I G + G + V TY +LI G K
Sbjct: 487 -LTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK 545
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+FD+ R +E M G+ P + + LC K R + FL+ G + +
Sbjct: 546 HEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALC---KSGRAEEAYSFLVKKGVVLTKVTY 602
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV + + G + +E + N+ + H +S +++ +L++ + +M
Sbjct: 603 TSLVDGFSKAGNTEFAAALIEKMV--NEGCKADSHTYSVLLQALCKQKKLNEALSILDQM 660
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+G+ + ++I + +D +F + I +K TY ++ Y + G
Sbjct: 661 TLRGVK-GNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGR 719
Query: 407 SGKLDSVINEMK 418
+ +I EM+
Sbjct: 720 IEEAGHLIGEME 731
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 6/218 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K A +F ME G+ PD +N L A SG A S +
Sbjct: 535 YTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF----L 590
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + + GFS GN + + G + TY L+ K +
Sbjct: 591 VKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKL 650
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++M G+ +I ++ + K D KS ++ G K +
Sbjct: 651 NEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVF 710
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSG 326
+ YC++GR++E + + + +P+V+ + F +G
Sbjct: 711 ISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFING 748
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 4/229 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ A F + G++ D+ N+L+ +GD+ A L +M+
Sbjct: 186 YNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLL-MMM 244
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ N +Y I G V + G S N+ TY LI G K
Sbjct: 245 PLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRI 304
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM G++PS+ +++G C +L + G G ++ L
Sbjct: 305 HDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSL 364
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ C G+ DE EE L SP V+ F+ II Y ++++DD
Sbjct: 365 IHGLCG-GKPDEAEELLNGAIARGFSPTVIT--FTNIINGYCKAEKIDD 410
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 20/217 (9%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G++ Y I+ K+ + A H+ ME G+ PD +N I C G + A
Sbjct: 699 GHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCA 758
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
S + M+ + +PN TY + F + ++A V+ + I
Sbjct: 759 FSTLKRMIDAS-CEPNYWTYWLLLKHFLKM------------SLANAHYVDTSGMWNWI- 804
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
D+V + E M+ G+ P+ ++ G C +L+ L +LG
Sbjct: 805 ------KLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISP 858
Query: 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
NE + L+KC C++ ++ + + +C P +
Sbjct: 859 NEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHL 895
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 6/236 (2%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
N +++++LI L P +A+ +L + +G + + +I K + + A
Sbjct: 355 NPDDWTYNSLIHGLCGGKPDEAEELLN---GAIARGFSPTVITFTNIINGYCKAEKIDDA 411
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-SLFEIMVSSEEYKPNSKTYDAFI 186
+ V + M + K D + LI + + A +L EI + PN Y + I
Sbjct: 412 LRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANG--LSPNVVIYTSII 469
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ +G V A + + G N TY SLI+G ++ + +M GI
Sbjct: 470 DAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGIT 529
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + +++G C + + D + + G +E L C+ GR +E
Sbjct: 530 PGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEE 585
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 28/258 (10%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+EY+ I + G + + V A+ + M G P+ + LI G + A L
Sbjct: 252 NEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLL 311
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQ--TYESLIHG 223
+ M P+ TY+A I G+ G + DA+ + G N TY SLIHG
Sbjct: 312 DEM-PRRGVVPSVWTYNAMIDGYCKSGRLKDALG---IKTLMEGNGCNPDDWTYNSLIHG 367
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD---RVKSFLKFLLGGGW 280
+ D + ++ G P++ ++ G C K+D RVKS ++
Sbjct: 368 LCGGKP-DEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKS---IMISSKC 423
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
K++ L+ + R+ E ++ L + SP V++ ++ II Y
Sbjct: 424 KLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVI--YTSIIDAYC-------- 473
Query: 341 EYSVGRMGKQGLSFKSAE 358
VG++G FK E
Sbjct: 474 --KVGKVGAALEVFKLTE 489
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 4/233 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME G++ +++L L
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M+S E +P T++ I GF G V+ N+++ S +V T
Sbjct: 129 GRYMMAKRYFNKMLS-EGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXREISPDVIT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y ++I+G + + + ++++ EM I P++ +++G + ++D + L+ +
Sbjct: 188 YNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE---VLLHFFSG 326
G G K N L+ C ++ E L+ + +P+ + L SG
Sbjct: 248 GFGIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISG 300
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++ S
Sbjct: 217 EPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPG-LCNAEKMSEAS 275
Query: 165 -LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
+ + MV ++ + ISG GN+DA A I Y LI
Sbjct: 276 GILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII 246
KA D++ + ++++ I+
Sbjct: 336 YCKAGDYEKAIKLLDKLIEKDIV 358
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 2/243 (0%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
D + ++ + + V A+ F M + G+K D + +N LI S V A ++F+
Sbjct: 196 DTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKE 255
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + + P+ KTY + G+ ++ + Y + AG +V Y +LI K+
Sbjct: 256 MKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSG 315
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D + + EM + G +PS + ++ GL + +LD + + G+ +
Sbjct: 316 KCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCN 375
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
+V YC + + ++ + K P + I++ S ++++ RMG
Sbjct: 376 AVVGAYCRSSKFQHAFKMVDEMRKTGIGPNA--RTYDIILQYLIKSQKIEEAYNVFQRMG 433
Query: 349 KQG 351
+G
Sbjct: 434 MEG 436
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 12/292 (4%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC--- 107
V + T + + F + ++ LI L +S KKA + K +K N
Sbjct: 211 VKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIF-----KEMKRNGRFVPD 265
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y L+ G +++ V+ M GIKPD + +LI + SG A+ +F
Sbjct: 266 LKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFR 325
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M + P+ Y I+G S +D K++ + A+GF + V T +++ ++
Sbjct: 326 EM-EANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRS 384
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
F + +EM GI P+ + +L+ L +K++ + + + G + N
Sbjct: 385 SKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTY 444
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+V +C RVD + + + + P +H FS +I +RL++
Sbjct: 445 TMMVGMFCSNERVDMALKVWKQMKEKGVLP--CMHMFSSLINGLCFENRLEE 494
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 82/205 (40%), Gaps = 4/205 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G + + A+ F +A G + N+++ A S A + + M
Sbjct: 339 YCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMR 398
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN++TYD + ++ + G + TY ++
Sbjct: 399 KTG-IGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERV 457
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +++M G++P + + ++ GLC +L+ + + +L G + + L
Sbjct: 458 DMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNL 517
Query: 291 VKCYCELGRV---DELEEQLETLTK 312
+ E GR+ ++ +L+TL K
Sbjct: 518 KEALIEGGRISLAQDMALKLDTLRK 542
>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 544
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 113/269 (42%), Gaps = 12/269 (4%)
Query: 91 LVLEWRLD------KMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPD 142
L+ RLD + L + SCLD + I + G +V A + M + G PD
Sbjct: 188 LIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPD 247
Query: 143 SAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+N L+ LC D V A L E + E+ PN +Y ISG+ L +D +
Sbjct: 248 IVTYNILLHG-LCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSL 306
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ + +G NV T+ +L+ G +KA D S +++++ G P++ L ++ G C
Sbjct: 307 FYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCR 366
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
++ + + N L+ C+ R+ E L L + + P L
Sbjct: 367 AGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVP--LA 424
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ +I Y S +D+ V M ++
Sbjct: 425 FVYNPVIDGYCKSGNIDEANAIVAEMEEK 453
>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
Length = 1014
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 3/220 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A+ M +GI PD VF+ LI A + AL LF M P+SKTY
Sbjct: 710 IDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCM-KWLRMSPSSKTYS 768
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I+G +D ++ + G N Y +L++ + D R EEM +L
Sbjct: 769 AMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKAL 828
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI+P+ ++ GLC KL+ ++ G L+ C C+ ++ +
Sbjct: 829 GIVPADVAESSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADA 888
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVE 341
+ C +V+ + +G+ + +SD LD E
Sbjct: 889 LHLKRLMESCRLKVDVVSYNVLITGLCKDKRISDALDLYE 928
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 4/191 (2%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ + + M + P+SA +N L+ + G +L L++ MV + +P++ TY
Sbjct: 639 NINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVR-KGIRPDNVTY 697
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G S G +D K+ + G + ++ LI + + + + M
Sbjct: 698 RLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCMKW 757
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD- 301
L + PS ++ GL + LD+ L+ +L G + N LV C +G++D
Sbjct: 758 LRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDR 817
Query: 302 --ELEEQLETL 310
L+E+++ L
Sbjct: 818 AFRLKEEMKAL 828
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Query: 98 DKMLKGNESCL-DEYACLIALSG---KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+KM+K N CL D + I LSG K + +P A+ + M +G+ PD+ + L+
Sbjct: 542 EKMVKNN--CLPDIHTYTILLSGFCRKGKILP-ALIMLQMMLDKGVVPDTVAYTCLLNGL 598
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ G V A +F+ ++ E + Y++ ++G+ GN++ + + + + N
Sbjct: 599 INEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPN 658
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL- 272
+Y L+HG +K F Y+ M+ GI P ++ GL +D FL
Sbjct: 659 SASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLE 718
Query: 273 KFLLGG 278
K +L G
Sbjct: 719 KMVLEG 724
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 131/371 (35%), Gaps = 86/371 (23%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ A + M + PD +N+LI G + A +F M+ + + P+
Sbjct: 304 RIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEGKINHAHYVFNHMLR-QTFVPSV 362
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAA-------------------GFSVNVQTYES 219
TY I G+ +D A++ I G ++ TY +
Sbjct: 363 ATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKAKQILKSMLEDGIDPDIVTYSA 422
Query: 220 LIHGSLKAR-------------DFDSVD------------------RFYEEMMSLGIIPS 248
LI+ + FDSV Y+ M+ G P+
Sbjct: 423 LINEGMITEAEHFRQYMSRMKISFDSVSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPN 482
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ + +L GLC L + K F+ LL I+E L+ C+ G +DE + E
Sbjct: 483 VCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAIDEKTFNALLLGICKYGTLDEALDLCE 542
Query: 309 TLTKCNQSPE-----VLLHFF-------SGIIRLYALSDR---LDDVEYSVGRMG--KQG 351
+ K N P+ +LL F +I L + D+ D V Y+ G +G
Sbjct: 543 KMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEG 602
Query: 352 LSFKSAEDVEMVICS---YFRCAAYDRL--------------DLFLDHIKGSYKLRRATY 394
++ + +IC Y C AY+ L + D + A+Y
Sbjct: 603 QVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASY 662
Query: 395 DFLVAGYRRAG 405
+ L+ GY + G
Sbjct: 663 NILMHGYVKGG 673
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V ME I D +N +I LC L + ++ P+ TY+ I
Sbjct: 276 ALCVLEDMERDSIPADIYTYNIMIDK-LCRIKRSARAFLLLKRMRKDDLIPDECTYNTLI 334
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G ++ + + + F +V TY ++I G + R D EM G++
Sbjct: 335 NGFFGEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVM 394
Query: 247 PS 248
PS
Sbjct: 395 PS 396
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ VF++M G+ P A F +L+ CLC + AL L +M S K + +Y+
Sbjct: 853 AVIVFSTMMRSGMVPTVATFTTLM-HCLCKESKIADALHLKRLMESCR-LKVDVVSYNVL 910
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+G + Y + G NV TY +L + + E++ G+
Sbjct: 911 ITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGIMQNGEELLEDIEERGL 970
Query: 246 IP---SIPILEKVLEGLCARRKLDRVKS 270
IP + LE+ +E A R+L+ +++
Sbjct: 971 IPVYVQLENLERQMED--AIRRLNMIRN 996
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSI 199
Query: 186 ISGFSSLGN----VDAMNKWYAANIAA-------------------------------GF 210
++G G+ +D + K N+ A G
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 377
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGL 399
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 426 FQEMVSHGVLPDVMTY 441
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 312 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + ++ ++I G V A +LF + + KP
Sbjct: 451 NGKLEK---ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 506
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G + N TY +LI L+ D + +
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLI 566
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
EEM S G ++ V++ L + +LD KSFL L
Sbjct: 567 EEMKSCGFSADASSIKMVIDMLLS-GELD--KSFLDML 601
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 45/296 (15%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMH 129
+S++++I S +A + L LD+M+ + D Y I + G K+ V A +
Sbjct: 246 YSYNSMIHGFCSVGRFQAAVKL---LDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYN 302
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV------------------- 170
V M +G KPD +N+L+ SG V A +F+ MV
Sbjct: 303 VVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYC 362
Query: 171 ---------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKW--YAANIAAGFSVN 213
++ P++ TY+ + G S G ++ +W A A+G +
Sbjct: 363 KVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGR--SLYEWDLVEAMRASGQPAD 420
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ TY L+ K FD ++ ++ +GI P+I +L+GLC +L K +
Sbjct: 421 LITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQ 480
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
L G + N ++ C+ G +DE E L + N P + F I+R
Sbjct: 481 LLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYIT--FDTIVR 534
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L G+V +H + +G + D + ++I G A+ +F M
Sbjct: 150 LCLKGRVLEAVSLLHEYVD---RGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRV 206
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y PN Y+ I G G VD + G ++V +Y S+IHG F +
Sbjct: 207 Y-PNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAV 265
Query: 235 RFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ +EM+ G + P + +++GLC ++ + + ++ GWK + L+
Sbjct: 266 KLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNG 325
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVL 320
YC G V E ++ + + + P V+
Sbjct: 326 YCLSGSVGEAKQVFDKMVERTALPNVI 352
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%)
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
T M GI+ D +NS+I G A+ L + MV + P+ T++ I G
Sbjct: 234 TEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCK 293
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
LG V A I G+ ++ +Y +L++G + + +++M+ +P++
Sbjct: 294 LGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVIS 353
Query: 252 LEKVLEGLCARRKLDRVKSFL 272
++ G C R +D L
Sbjct: 354 YCTLINGYCKVRMVDEAMVLL 374
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 40/226 (17%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
S++AL+ S S +A+ V + +++ N + Y LI KV+ V AM +
Sbjct: 318 SYNALMNGYCLSGSVGEAKQVFDKMVERTALPN---VISYCTLINGYCKVRMVDEAMVLL 374
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSG-------------------DVVT----------- 161
T M + + PD+ +N L+ SG D++T
Sbjct: 375 TEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKH 434
Query: 162 -----ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
AL+LF+ ++ PN +TY+ + G G + + + A G N++T
Sbjct: 435 EKFDKALALFQHIIEIG-ISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRT 493
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
Y +IHG K D + +M++ +P+ + ++ + +
Sbjct: 494 YNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAILVK 539
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 21/282 (7%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
FN L+ + +SL+ I+ S KP+ T+ I+ F+ LG +
Sbjct: 72 FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131
Query: 206 IAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ GF ++V+ +L+ G LK R ++V + E + G ++ GLC K
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLH-EYVDRGFRFDEVCYGTIINGLCKIGK 190
Query: 265 L-DRVKSFLKFLLGGGWKINEN--MAQKLVKCYCELGRVDE----LEEQLETLTKCN-QS 316
D ++ F K ++ N M ++ C+ G VDE E +E + + S
Sbjct: 191 TRDAIQMFPKM---KKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYS 247
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDR 375
++H F + R A LD++ G++ +F D +C R + AY+
Sbjct: 248 YNSMIHGFCSVGRFQAAVKLLDEMVVR-GKVYPDVYTFNILID---GLCKLGRVSEAYNV 303
Query: 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + IK +K +Y+ L+ GY +G G+ V ++M
Sbjct: 304 VAVM---IKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKM 342
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 2/196 (1%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+M+ KG + Y LI + K + A +F + +GI PD +FN+LI +
Sbjct: 390 DEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCAN 449
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G++ A ++ + M + P+ T++ + G G V+A + + G + +
Sbjct: 450 GNMDRAFAMLKEM-DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHIS 508
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI G K D R +EM+S+G P++ +++GLC + D + LK ++
Sbjct: 509 YNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568
Query: 277 GGGWKINENMAQKLVK 292
G N+N L++
Sbjct: 569 SKGITPNDNTYLSLIE 584
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A M +G+ P + +N LI A + A + + M S + P+S TY
Sbjct: 311 NLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM-SEKGLVPDSVTY 369
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G+ GNV + I+ G TY SLI+ K D +E+++
Sbjct: 370 NILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR 429
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI P + + +++G CA +DR + LK + +E L++ C G+V+
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEA 489
Query: 303 LEEQLETLTKCNQSPE 318
E +E + P+
Sbjct: 490 ARELIEEMKSRGIKPD 505
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A + M+ + PD FN+L+ G V A L E M S KP+ +Y
Sbjct: 451 NMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEM-KSRGIKPDHISY 509
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ ISG+S G++ + ++ GF+ + TY +LI G K + D ++ +EM+S
Sbjct: 510 NTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMIS 569
Query: 243 LGIIPSIPILEKVLEGL 259
GI P+ ++EG+
Sbjct: 570 KGITPNDNTYLSLIEGI 586
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 6/220 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V+ A +F M+ +G+KPDS + S I G + A + E M +P
Sbjct: 240 GRVEG---ARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKM-KEIGLRPT 295
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ TY+ I G+ + GN++ + + G V TY LIH D D +
Sbjct: 296 AVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIK 355
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G++P ++ G C + + + ++ G + L+ + G
Sbjct: 356 EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRG 415
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
R+ + ++ E + + P++++ F+ +I + + +D
Sbjct: 416 RMKQADDLFEKIVRKGIFPDLIM--FNALIDGHCANGNMD 453
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
MEA GIKP+ +N++I G V A +F++M KP+S TY +FISG G
Sbjct: 217 MEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLM-KCRGVKPDSYTYGSFISGMCKEG 275
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ + G TY +LI G + + + ++M+ G++P++
Sbjct: 276 KLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYN 335
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ L K+D +K + G + L+ YC G V
Sbjct: 336 MLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNV 382
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 5/225 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M +G+ PDS +N LI C C G+V A +L + M+S + +P TY + I
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRC-GNVKKAFTLHDEMIS-KGIQPTRVTYTSLIYV 410
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
S G + + + + G ++ + +LI G + D +EM + ++P
Sbjct: 411 LSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+++G C K++ + ++ + G K + L+ Y + G + + +
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 530
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ +P +L ++ +I+ ++ D E + M +G++
Sbjct: 531 EMLSIGFNPTLLT--YNALIQGLCKNEEGDHAEQLLKEMISKGIT 573
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 5/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F M+ +G+ P N ++ L S A L+ M K + T++ I
Sbjct: 140 AFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMR-IKSSVVTFNIMI 198
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G + ++ A G NV TY ++IHG + ++ M G+
Sbjct: 199 NVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVK 258
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + G+C KL+ L+ + G + L+ YC G ++ +
Sbjct: 259 PDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDY 318
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + P V ++ +I L ++D+ + + M ++GL S ++I
Sbjct: 319 RDKMVREGLMPTV--STYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVT-YNILING 375
Query: 367 YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y RC + L + I + R TY L+ + G + D + ++
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKI 427
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 3/169 (1%)
Query: 100 MLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
M+KG +AC +++L K A ++ M IK FN +I LC
Sbjct: 146 MMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMI-NVLCKE 204
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+ F ++ + KPN TY+ I G+ S G V+ + G + TY
Sbjct: 205 GKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTY 264
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
S I G K + E+M +G+ P+ +++G C + L+
Sbjct: 265 GSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLE 313
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 9/245 (3%)
Query: 80 SLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIA---LSGKVQNVPFAMHVFTSM 134
SL KK Q+ +RL +KML G+ + Y LI + G+ ++ VF +
Sbjct: 329 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKVFKEL 385
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
+G KPD + N+ + +G+V +FE + S + P+ ++Y I G + G
Sbjct: 386 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSILIHGLTKAGQ 444
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+ + A GF+++ + Y +++ G K+ EEM + P++
Sbjct: 445 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 504
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++GL +LD + G ++N + L+ + ++GR+DE LE + K
Sbjct: 505 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 564
Query: 315 QSPEV 319
+P V
Sbjct: 565 LTPNV 569
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K ++F +M+ QG D+ +N+++ SG V A + E M
Sbjct: 432 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM- 490
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P TY A + G + + +D + + G +NV Y SLI G K
Sbjct: 491 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 550
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D EEMM G+ P++ +L+ L +++
Sbjct: 551 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 586
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 43/248 (17%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE----YACLIALSGKVQNVPFAMHVFT 132
L T+L + ++ Q+ L +KG SCL+ Y I GK NV A F
Sbjct: 82 LFTTLVRALAREGQVADALALVDEVKG--SCLEPDIVLYNVCIDCFGKAGNVDMACKFFH 139
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++AQG+KPD + S+I +G + A LF M +E P + Y+ I G+ S
Sbjct: 140 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM-EAERSVPCAYAYNTMIMGYGSA 198
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G F+ + E + G IPS+
Sbjct: 199 GR-----------------------------------FEDAYKLLERLRERGCIPSVVSF 223
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L L +RK+D S + ++ + N + ++ C GRV+E L+ +
Sbjct: 224 NSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 282
Query: 313 CNQSPEVL 320
+ P +L
Sbjct: 283 ASLFPNLL 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y+ LI GKV + A + M +G+ P+ +NSL+ A + + ++
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 587
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL F+ M + PN+ TY I+G + + ++ G NV TY ++I
Sbjct: 588 ALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G K + +E + G IP ++EG+
Sbjct: 647 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 684
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 2/215 (0%)
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
C Y +I G A + + +G P FNS++ V ALSLF
Sbjct: 184 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF 243
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+M E PNS TY+ I G V+ + A N+ T ++ K
Sbjct: 244 EVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 301
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
AR + + +E G P +++GL + ++D + +L G N +
Sbjct: 302 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 361
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L++ + GR ++ + + L + P++ L
Sbjct: 362 YTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTL 396
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 92/209 (44%), Gaps = 6/209 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++A++ +S KA +LE +K + + + Y ++ K+ + A +F
Sbjct: 466 AYNAVVDGFCKSGKVHKAYEILEEMKEKCV---QPTVATYGAIVDGLAKIDRLDEAYMLF 522
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+++GI+ + +++SLI G + A + E M+ + PN T+++ +
Sbjct: 523 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLTPNVYTWNSLLDALVK 581
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ + + N TY LI+G + + ++ F+++M G++P++
Sbjct: 582 AEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVT 641
Query: 252 LEKVLEGLCARRKL-DRVKSFLKFLLGGG 279
++ GL + D F +F GG
Sbjct: 642 YTTMISGLAKVGNITDAYSLFERFKANGG 670
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 11/195 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI+ + + A +F M G++PD A++N LI A G++ A+ + E M
Sbjct: 482 YSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKM- 540
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI-----AAGFSVNVQTYESLIHGSL 225
E +P+++ + I GF+ G++ A NI +G + V TY +LIHG +
Sbjct: 541 QKERMQPSNRAFRPIIEGFAVAGDMKR-----ALNILDLMRRSGCAPTVMTYNALIHGLI 595
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + +M GI P+ ++ G A + + + + GG K++
Sbjct: 596 KKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVY 655
Query: 286 MAQKLVKCYCELGRV 300
+ + L++ C+ GR+
Sbjct: 656 IYETLLRACCKSGRM 670
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 14/178 (7%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E+ I + G N + A FT ++ G+K D ++ +L+ AC SG + +AL++
Sbjct: 618 NEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVT 677
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVNVQTYESLI 221
M S+++ N+ Y+ I G++ G+V W AA++ G N+ TY S I
Sbjct: 678 REM-STQKIARNTFVYNILIDGWARRGDV-----WEAADLMKQMKEDGVPPNIHTYTSYI 731
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR-VKSFLKFLLGG 278
+ KA D + EEM +G+ P++ +++G DR +KSF + L G
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAG 789
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ +I K + A F +M A+GI+P++ VF SL+ A + D+ LS E M
Sbjct: 271 EFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSCVEEM 330
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+E + TY I+GF+ + + + + + A +N Y ++IH ++ +
Sbjct: 331 -KAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQSGN 389
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
D + EM GI I ++ G
Sbjct: 390 MDRAEELVREMEEDGIDAPIDAYHSMMHG 418
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M Q I ++ V+N LI GDV A L + M + P
Sbjct: 667 SGRMQS---ALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQM-KEDGVPP 722
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ++I+ G++ K G N++TY +LI G KA D + +
Sbjct: 723 NIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSF 782
Query: 238 EEMMSLGIIP 247
EEM G+ P
Sbjct: 783 EEMKLAGLKP 792
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++ M G P +N+LI + V A+S+ M S PN TY +
Sbjct: 568 ALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKM-SIAGITPNEHTYTIIM 626
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+++ G++ +++ G ++V YE+L+ K+ S EM + I
Sbjct: 627 RGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIA 686
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ + +++G R + +K + G N + + C+ G + ++
Sbjct: 687 RNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKV 746
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+E + P L ++ +I+ +A + D S M GL
Sbjct: 747 IEEMADVGLKPN--LKTYTTLIKGWAKASLPDRALKSFEEMKLAGL 790
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 3/221 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I + N+ A + ME GI ++S++ D L +FE +
Sbjct: 377 YSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK 436
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ +Y I+ + +G V + G N +TY LI G + DF
Sbjct: 437 ECC-FTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDF 495
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +EEM+ G+ P I ++E C +DR L+ + + + + +
Sbjct: 496 ANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPI 555
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
++ + G + L+ + + +P V+ + G+I+
Sbjct: 556 IEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIK 596
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI+ K + V A+++F M ++G KPD FNSLI AL L++ M+
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N+ TY+ I F G + K + G ++ TY LI +A +
Sbjct: 540 L-EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 598
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+MMS G+ P+ ++ GLC + FL+ ++ G + L
Sbjct: 599 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 658
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
+ C+ GR E + L P+ + ++ +I + DD + R
Sbjct: 659 INGLCKTGRAQEALNLFDKLQVEGICPDAIT--YNTLISWHCKEGMFDDAHLLLSR 712
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
DIF FNS F K + L D +L+G + Y LI +
Sbjct: 511 DIFTFNSLIFGL---------CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 561
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ + M +G D +N LI A +G++ L+LFE M+S + PN+ +
Sbjct: 562 AMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNISC 620
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G GN+ ++ I G + ++ TY SLI+G K ++++
Sbjct: 621 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 680
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
GI P ++ C D L + G+ NE
Sbjct: 681 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNE 722
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 6/195 (3%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+VF M ++GI P F ++ A +V +A +L + M + PN+ Y I
Sbjct: 221 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDM-TRHGCVPNAIVYQTLIHA 279
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
S +G V+ + K + G +V T+ IHG K + + M+ G P+
Sbjct: 280 LSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 339
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL- 307
++ GLC K+D + LL N + L+ Y GR+DE + +
Sbjct: 340 SFTYGVLMHGLCRMGKVDEA----RMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 395
Query: 308 ETLTKCNQSPEVLLH 322
E++ P++ +
Sbjct: 396 ESMLSVGCGPDIFTY 410
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 100/251 (39%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + + ++ LI++L +K Q L D KG + + +
Sbjct: 458 LEEARNVLDEMSGKGLALNAVGYNCLISAL--CKDEKVQDALNMFGDMSSKGCKPDIFTF 515
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI KV A+ ++ M +G+ ++ +N+LI A L G + AL L M+
Sbjct: 516 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML- 574
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ TY+ I GN++ + ++ G + N + LI+G + +
Sbjct: 575 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 634
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
F +M+ G+ P I ++ GLC + + L G + L+
Sbjct: 635 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 694
Query: 292 KCYCELGRVDE 302
+C+ G D+
Sbjct: 695 SWHCKEGMFDD 705
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAM 128
+++ LI +L ++ + +K + E + K L N +C I ++G + N+ A+
Sbjct: 583 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN-----ISCNILINGLCRTGNIQHAL 637
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
M +G+ PD +NSLI +G AL+LF+ + E P++ TY+ IS
Sbjct: 638 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFD-KLQVEGICPDAITYNTLISW 696
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
G D + + + +GF N T+ L+ +K D
Sbjct: 697 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 28/320 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV V + + M G PD FN I + A L + M+
Sbjct: 273 YQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 332
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ PNS TY + G +G VD +NK N+ + +LI+G +
Sbjct: 333 L-RGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVV--------LFNTLINGYVS 383
Query: 227 ARDFDSVDR-FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
D +E M+S+G P I ++ GLC + L + + + G + N
Sbjct: 384 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVI 443
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C+ GR++E L+ ++ + + ++ +I +++ D G
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV--GYNCLISALCKDEKVQDALNMFG 501
Query: 346 RMGKQG-----LSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVA 399
M +G +F S +I + ++ L L+ D + TY+ L+
Sbjct: 502 DMSSKGCKPDIFTFNS------LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 555
Query: 400 GYRRAGLSGKLDSVINEMKF 419
+ R G + ++N+M F
Sbjct: 556 AFLRRGAMQEALKLVNDMLF 575
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 6/170 (3%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S+ P T+ + + VD+ G N Y++LIH K +
Sbjct: 228 SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVN 287
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
V + EEM+ +G IP + + GLC ++ + +L G+ N L+
Sbjct: 288 EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLM 347
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
C +G+VDE L N+ P + F+ +I Y RLD+ +
Sbjct: 348 HGLCRMGKVDEARMLL------NKVPNPNVVLFNTLINGYVSRGRLDEAK 391
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 8/287 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ + A + M +G P+S + L+ G V A M+ ++ PN
Sbjct: 317 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEAR-----MLLNKVPNPNV 371
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ I+G+ S G +D A + + ++ G ++ TY +LI G K S
Sbjct: 372 VLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMN 431
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM G P++ +++ C +L+ ++ L + G G +N L+ C+
Sbjct: 432 EMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDE 491
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
+V + ++ P++ F+ +I ++ ++ M +G+ +
Sbjct: 492 KVQDALNMFGDMSSKGCKPDIFT--FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 549
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++ R A + L L D + L TY+ L+ RAG
Sbjct: 550 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAG 596
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ +G +P+ + LI G + A ++ + M S + N+ Y+ I
Sbjct: 426 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM-SGKGLALNAVGYNCLI 484
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
S V DA+N + + G ++ T+ SLI G K F+ Y++M+ G+
Sbjct: 485 SALCKDEKVQDALN-MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGV 543
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I + ++ R + + +L G +++ L+K C G +++
Sbjct: 544 IANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEK 600
>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F+ M GI+PD+ ++N+++ L + AL+L+ M+ S +PN TY+ I
Sbjct: 103 AIESFSRMREFGIEPDAHMYNTILRDVLNEKLLELALALYTTMLKSN-VEPNFYTYNMLI 161
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G V + G V + S+++G +A + D + + +M
Sbjct: 162 DGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDMKETSYP 221
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + VL G C +L+ SF+ + G+ +N N L+ + + R E
Sbjct: 222 PDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFKARRYREAHAW 281
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ K P+V+L ++ +IR + R+ + + M + GL+
Sbjct: 282 YTKMFKQGIVPDVVL--YAIMIRGLSKEGRVGEAAKMLEEMTQIGLT 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 2/200 (1%)
Query: 100 MLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
MLK N E Y LI K V A + M+ GI P S++ C + +
Sbjct: 145 MLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANN 204
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V A LF M + Y P+ + + ++GF +G ++ + GFS+N +Y
Sbjct: 205 VDEAHKLFNDMKETS-YPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYS 263
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
SLI+ KAR + +Y +M GI+P + + ++ GL ++ L+ +
Sbjct: 264 SLINAFFKARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQI 323
Query: 279 GWKINENMAQKLVKCYCELG 298
G + +++ C++G
Sbjct: 324 GLTPDAYCYNAVIQGLCDVG 343
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 23/235 (9%)
Query: 101 LKGNESCLDEY------ACLIALSG------KVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
+KG + LDE C+++ + + NV A +F M+ PD N
Sbjct: 170 VKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDMKETSYPPDMISCNV 229
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
++ G + ALS F M+ ++ + N +Y + I+ F + WY
Sbjct: 230 VLNGFCKMGRLEEALS-FVWMIKNDGFSLNRNSYSSLINAFFKARRYREAHAWYTKMFKQ 288
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G +V Y +I G K + EEM +G+ P V++GLC L+R
Sbjct: 289 GIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNAVIQGLCDVGLLNRA 348
Query: 269 KSFLKFLLGGGWKINEN--MAQKLVKC-YCELGRVDELEEQLETLTKCNQSPEVL 320
+S +I+E+ ++ C C+ G V E +E + K P V+
Sbjct: 349 QSL-------RLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPSVV 396
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
+ Y+ LI K + A +T M QGI PD ++ +I G V A + E
Sbjct: 260 NSYSSLINAFFKARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEE 319
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + P++ Y+A I G +G +N+ + + NV T+ LI K
Sbjct: 320 M-TQIGLTPDAYCYNAVIQGLCDVG---LLNRAQSLRLEIS-EHNVCTHTILICEMCKRG 374
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKFLLGGGWKINENMA 287
+ +M LG PS+ ++ GLC L++ K+ F K +G ++ +++
Sbjct: 375 MVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLEKAKNLFCKLEVGRRHSLHLSLS 434
Query: 288 Q------------KLVKCYCELGRV 300
Q K K CE G++
Sbjct: 435 QGSGQVSDSARLLKKAKEMCEAGQI 459
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 1/192 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI+ K + V A+++F M ++G KPD FNSLI AL L++ M+
Sbjct: 87 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 146
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N+ TY+ I F G + K + G ++ TY LI +A +
Sbjct: 147 L-EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 205
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+MMS G+ P+ ++ GLC + FL+ ++ G + L
Sbjct: 206 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 265
Query: 291 VKCYCELGRVDE 302
+ C+ GR E
Sbjct: 266 INGLCKTGRAQE 277
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
DIF FNS F K + L D +L+G + Y LI +
Sbjct: 118 DIFTFNSLIFGL---------CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 168
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ + M +G D +N LI A +G++ L+LFE M+S + PN+ +
Sbjct: 169 AMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNISC 227
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G GN+ ++ I G + ++ TY SLI+G K ++++
Sbjct: 228 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 287
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
GI P ++ C D L + G+ NE
Sbjct: 288 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNE 329
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 100/251 (39%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + + ++ LI++L +K Q L D KG + + +
Sbjct: 65 LEEARNVLDEMSGKGLALNAVGYNCLISAL--CKDEKVQDALNMFGDMSSKGCKPDIFTF 122
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI KV A+ ++ M +G+ ++ +N+LI A L G + AL L M+
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML- 181
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ TY+ I GN++ + ++ G + N + LI+G + +
Sbjct: 182 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 241
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
F +M+ G+ P I ++ GLC + + L G + L+
Sbjct: 242 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 301
Query: 292 KCYCELGRVDE 302
+C+ G D+
Sbjct: 302 SWHCKEGMFDD 312
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAM 128
+++ LI +L ++ + +K + E + K L N +C I ++G + N+ A+
Sbjct: 190 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN-----ISCNILINGLCRTGNIQHAL 244
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
M +G+ PD +NSLI +G AL+LF+ + E P++ TY+ IS
Sbjct: 245 EFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFD-KLQVEGICPDAITYNTLISW 303
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
G D + + + +GF N T+ L+ +K D
Sbjct: 304 HCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 344
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 3/175 (1%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
MH SM + G PD +N+LI G +V+A L M + +PN TY I
Sbjct: 1 MH--ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM-QIKGCEPNVITYTILID 57
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
F G ++ G ++N Y LI K + +M S G P
Sbjct: 58 RFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKP 117
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I ++ GLC K + + +L G N L+ + G + E
Sbjct: 118 DIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 172
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ +G +P+ + LI G + A ++ + M S + N+ Y+ I
Sbjct: 33 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM-SGKGLALNAVGYNCLI 91
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
S V DA+N + + G ++ T+ SLI G K F+ Y++M+ G+
Sbjct: 92 SALCKDEKVQDALN-MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGV 150
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I + ++ R + + +L G +++ L+K C G +++
Sbjct: 151 IANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEK 207
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI+ K + V A+++F M ++G KPD FNSLI AL L++ M+
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N+ TY+ I F G + K + G ++ TY LI +A +
Sbjct: 522 L-EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 580
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+MMS G+ P+ ++ GLC + FL+ ++ G + L
Sbjct: 581 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 640
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
+ C+ GR E + L P+ + ++ +I + DD + R
Sbjct: 641 INGLCKTGRAQEALNLFDKLQVEGICPDAIT--YNTLISWHCKEGMFDDAHLLLSR 694
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
DIF FNS F K + L D +L+G + Y LI +
Sbjct: 493 DIFTFNSLIFGL---------CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRG 543
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ + M +G D +N LI A +G++ L+LFE M+S + PN+ +
Sbjct: 544 AMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS-KGLNPNNISC 602
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I+G GN+ ++ I G + ++ TY SLI+G K ++++
Sbjct: 603 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 662
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
GI P ++ C D L + G+ NE
Sbjct: 663 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNE 704
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 6/195 (3%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+VF M ++GI P F ++ A +V +A +L + M + PN+ Y I
Sbjct: 203 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDM-TRHGCVPNAIVYQTLIHA 261
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+G V+ + K + G +V T+ IHG K + + M+ G P+
Sbjct: 262 LXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 321
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL- 307
++ GLC K+D + LL N + L+ Y GR+DE + +
Sbjct: 322 SFTYGVLMHGLCRMGKVDEA----RMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMH 377
Query: 308 ETLTKCNQSPEVLLH 322
E++ P++ +
Sbjct: 378 ESMLSVGCGPDIFTY 392
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 100/251 (39%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + + ++ LI++L +K Q L D KG + + +
Sbjct: 440 LEEARNVLDEMSGKGLALNAVGYNCLISAL--CKDEKVQDALNMFGDMSSKGCKPDIFTF 497
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI KV A+ ++ M +G+ ++ +N+LI A L G + AL L M+
Sbjct: 498 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDML- 556
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ TY+ I GN++ + ++ G + N + LI+G + +
Sbjct: 557 FRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ 616
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
F +M+ G+ P I ++ GLC + + L G + L+
Sbjct: 617 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 676
Query: 292 KCYCELGRVDE 302
+C+ G D+
Sbjct: 677 SWHCKEGMFDD 687
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMH 129
+++ LI +L ++ + +K + E + K L N +C I ++G + N+ A+
Sbjct: 566 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNN-----ISCNILINGLCRTGNIQHALE 620
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
M +G+ PD +NSLI +G AL+LF+ + E P++ TY+ IS
Sbjct: 621 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFD-KLQVEGICPDAITYNTLISWH 679
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
G D + + + +GF N T+ L+ +K D
Sbjct: 680 CKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 28/320 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI KV V + + M G PD FN I + A L + M+
Sbjct: 255 YQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 314
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ PNS TY + G +G VD +NK N+ + +LI+G +
Sbjct: 315 L-RGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVV--------LFNTLINGYVS 365
Query: 227 ARDFDSVDR-FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
D +E M+S+G P I ++ GLC + L + + + G + N
Sbjct: 366 RGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVI 425
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L+ +C+ GR++E L+ ++ + + ++ +I +++ D G
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV--GYNCLISALCKDEKVQDALNMFG 483
Query: 346 RMGKQG-----LSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVA 399
M +G +F S +I + ++ L L+ D + TY+ L+
Sbjct: 484 DMSSKGCKPDIFTFNS------LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 537
Query: 400 GYRRAGLSGKLDSVINEMKF 419
+ R G + ++N+M F
Sbjct: 538 AFLRRGAMQEALKLVNDMLF 557
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 6/170 (3%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S+ P T+ + + VD+ G N Y++LIH K +
Sbjct: 210 SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVN 269
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
V + EEM+ +G IP + + GLC ++ + +L G+ N L+
Sbjct: 270 EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLM 329
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
C +G+VDE L N+ P + F+ +I Y RLD+ +
Sbjct: 330 HGLCRMGKVDEARMLL------NKVPNPNVVLFNTLINGYVSRGRLDEAK 373
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 110/280 (39%), Gaps = 8/280 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G P+S + L+ G V A M+ ++ PN ++ I
Sbjct: 306 AAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEAR-----MLLNKVPNPNVVLFNTLI 360
Query: 187 SGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+G+ S G +D A + + ++ G ++ TY +LI G K S EM G
Sbjct: 361 NGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 420
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ +++ C +L+ ++ L + G G +N L+ C+ +V +
Sbjct: 421 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 480
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
++ P++ F+ +I ++ ++ M +G+ + ++
Sbjct: 481 MFGDMSSKGCKPDIFT--FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538
Query: 366 SYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
R A + L L D + L TY+ L+ RAG
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAG 578
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ +G +P+ + LI G + A ++ + M S + N+ Y+ I
Sbjct: 408 ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM-SGKGLALNAVGYNCLI 466
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
S V DA+N + + G ++ T+ SLI G K F+ Y++M+ G+
Sbjct: 467 SALCKDEKVQDALN-MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGV 525
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
I + ++ R + + +L G +++ L+K C G +++
Sbjct: 526 IANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEK 582
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 2/208 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M+ +G+KP+ F +LI + + AL L E MV KPN+ Y I GF
Sbjct: 242 VFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGF 301
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G ++ K + + + Y +LI K + V EM G P
Sbjct: 302 CGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDT 361
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ G C L+ + ++ G K + ++ C+ G++D+ + LE
Sbjct: 362 VTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLED 421
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ + P+VL + F G+ + L +
Sbjct: 422 MPRRGCPPDVLSYRIIFDGLCEMMQLKE 449
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 6/245 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDK--MLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
++ LI L +S K L L+ + K M+K N S Y LI V + FA +
Sbjct: 257 TFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI---YTTLIKGFCGVGELNFAFKL 313
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +K SAV+++LI A G + M KP++ TY+A I+G
Sbjct: 314 KEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREM-GENGCKPDTVTYNAIINGHC 372
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
++++ ++ + G +V ++ ++I K D E+M G P +
Sbjct: 373 KENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVL 432
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +GLC +L S L ++ G+ KLV C+ ++ L L +L
Sbjct: 433 SYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSL 492
Query: 311 TKCNQ 315
+ N+
Sbjct: 493 GRGNR 497
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M + GI+PD +NSL+ +G A +F+ MV KP+ TY +
Sbjct: 96 AIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVK-RGLKPDITTYGTLL 154
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G++S G + M+ A + G ++ + LI K D V + +M G+
Sbjct: 155 HGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLT 214
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ V++GLC +LD + ++ G N + L+ C + ++ EE
Sbjct: 215 PNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEEL 274
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
+ + +P ++ FF+ I+
Sbjct: 275 IFEILDQGINPNIV--FFNTIL 294
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 11/236 (4%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +V A + M + + PD+ +NS+I A + + A+ + +MV PN
Sbjct: 23 KEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEVLTVMV-----MPNC 77
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY++ + G+ S G + + + G +V TY SL+ K + ++
Sbjct: 78 FTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDS 137
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P I +L G ++ L + L ++ G +++ ++ L+ Y + +
Sbjct: 138 MVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEK 197
Query: 300 VDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
VDE+ + + +P + + G+ +L RLDD + +M +GL+
Sbjct: 198 VDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKL----GRLDDAMLNFEQMIDKGLT 249
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
QGI P+ FN+++ + G V+ + LF+++ P+ TY I G+ G +D
Sbjct: 281 QGINPNIVFFNTILDSLCKEGRVIESKKLFDLL-GHIGVNPDVITYSTLIDGYCLAGKMD 339
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
K ++ G + TY +LI+G K + ++EM S G+ P I +L
Sbjct: 340 GAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIIL 399
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKI 282
GL R+ K + G ++
Sbjct: 400 HGLFRTRRTAAAKELYARITESGTQL 425
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 39/240 (16%)
Query: 128 MHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH ++ Q G++ D VFN LICA V + +F M + PN+ Y I
Sbjct: 166 MHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKM-RQQGLTPNAVNYRTVI 224
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G LG +D + I G + NV Y SLIH ++ + E++ GI
Sbjct: 225 DGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGIN 284
Query: 247 PSIPILEKVLEGLCARR-----------------------------------KLDRVKSF 271
P+I +L+ LC K+D
Sbjct: 285 PNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKL 344
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
L ++ G K + L+ YC++ R+++ + + +P+++ + G+ R
Sbjct: 345 LTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFR 404
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 111 YACLI---ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y+ LI L+GK+ AM + T M + G+KPDS +++LI + AL+LF+
Sbjct: 325 YSTLIDGYCLAGKMDG---AMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFK 381
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
M S P+ TY+ + G A + YA +G + + TY ++
Sbjct: 382 EM-ESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/208 (17%), Positives = 86/208 (41%), Gaps = 7/208 (3%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ +Y+ I G G+VD Y + S + TY S+I KA+ D
Sbjct: 9 PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRA--- 65
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E++++ ++P+ ++ G C+ + ++ + + G + + L+ C+
Sbjct: 66 -MEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G+ E + +++ K P++ + ++ YA L ++ + M + G+
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITT--YGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182
Query: 357 AEDVEMVICSYFRCAAYDRLDLFLDHIK 384
++IC+Y + D + L ++
Sbjct: 183 -HVFNILICAYTKQEKVDEVVLVFSKMR 209
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ ++ A+ + MEAQG+ P +NS++ G + A L M
Sbjct: 306 YTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM- 364
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S ++ +P++ T + I+ + +G++ + K + AG ++ TY++LIHG K R+
Sbjct: 365 SEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREM 424
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D M+ G PS +++G C ++ + V + G +++++ + L
Sbjct: 425 DGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRAL 484
Query: 291 VKCYCELGRVD 301
++ +C+ +VD
Sbjct: 485 IRRFCKREQVD 495
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+L K A+ V ME +GIKPD +NSLI G + A+ LF+ +
Sbjct: 238 YNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI- 296
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN TY I G+ L ++D + A G V TY S++ +
Sbjct: 297 --RDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRI 354
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF---LLGGGWKINENMA 287
++ EM I P ++ C K+ +KS LK ++ G K+++
Sbjct: 355 RDANKLLNEMSEKKIEPDNVTCNTLINAYC---KIGDMKSALKVKNRMVEAGLKLDQFTY 411
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSP 317
+ L+ +C++ +D +E L ++ SP
Sbjct: 412 KALIHGFCKIREMDGAKELLLSMLDAGFSP 441
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 107/276 (38%), Gaps = 49/276 (17%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119
D DI NS FSW +I + ++A V E M+ G L +AC + L+
Sbjct: 124 DDPDI---NSHVFSW-LVIVYANTKMKQEAIQVFE---HMMVNGFRPHL--HACTVLLNS 174
Query: 120 KVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS----- 172
++ V+ M G++ + V+N LI AC SGDV A +L M S
Sbjct: 175 LAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPD 234
Query: 173 -----------------------------EEYKPNSKTYDAFISGFSSLGNV-DAMNKWY 202
E KP+ TY++ I GF G + +AM +
Sbjct: 235 LFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFK 294
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
A + N TY +LI G + D D R EEM + G+ P++ +L LC
Sbjct: 295 EIRDA---TPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEI 351
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ L + + + L+ YC++G
Sbjct: 352 GRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIG 387
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 4/194 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G++++ A + M + I+PD+ N+LI A GD+ +AL + MV + K +
Sbjct: 352 GRIRD---ANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAG-LKLD 407
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY A I GF + +D + + + AGFS + TY L+ G ++ ++V + +
Sbjct: 408 QFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPD 467
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
E + G+ + ++ C R ++D K + G + + L Y +LG
Sbjct: 468 EFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLG 527
Query: 299 RVDELEEQLETLTK 312
+ + + L+ + K
Sbjct: 528 KANAASDLLDEMYK 541
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 3/230 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + + Y ++ K + + A + M + G P+ F +L+ G V
Sbjct: 251 RGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHD 310
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
ALS++ MV E + P++ +Y+ I G +G++ ++ + N TY +L+
Sbjct: 311 ALSMWHWMVD-EGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLV 369
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G A D D + EM S G P++ + +++ LC + D+ +S + +L
Sbjct: 370 DGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCP 429
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFFSGIIR 329
N L+ C+ GRV + + C+ + G+ R
Sbjct: 430 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFR 479
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ +M G+ P+ +N LI A LC D V A +S + P+ ++ +SG
Sbjct: 144 VYDNMRKAGVDPNVYTYNLLIRA-LCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGM 202
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
LG V+ + A +V VQ +Y +++H V EM+ G+ P+
Sbjct: 203 CKLGRVEEARGFLAE------TVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPN 256
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ +++ C R+L + L ++ G N LVK + E G+V +
Sbjct: 257 VVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHD 310
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 184 AFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I F+ G+ D A+ +Y A+ V+ Y L+ L+ +V Y+ M
Sbjct: 91 AAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRK 150
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P++ ++ LC ++D + L + G +E +V C+LGRV+E
Sbjct: 151 AGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEE 210
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L S ++H G R++
Sbjct: 211 ARGFLAETVPVQASYNAVVHALCGEFRMW 239
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 82/192 (42%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K N+ A V+ M +GIKPD + + L GD A L E MV
Sbjct: 484 YTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMV 543
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+++ + P+ Y+ I G +GN+ ++ G + TY ++I G L+ F
Sbjct: 544 ATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQF 603
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ + PS+ ++ G +L++ + + G + N L
Sbjct: 604 KMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNAL 663
Query: 291 VKCYCELGRVDE 302
+ C+ G +DE
Sbjct: 664 LYGMCKAGNIDE 675
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A V+ +M GI P FN+++ +C +GD+ ++ E+ + E+ + TY+
Sbjct: 259 ASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEF--SEVTYNIL 316
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I+GFS G ++ +++ +GF+V ++ LI G K FD +EM++ GI
Sbjct: 317 INGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGI 376
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFL 272
P+ + LC ++D + L
Sbjct: 377 YPTTSTYNIYICALCDFGRIDDARELL 403
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 4/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F + A I P +N+LI SG++ A L E M + + P+ TY + GF
Sbjct: 433 LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF-PDVITYTTLVKGF 491
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPS 248
GN+ + Y + G + Y + G L+ D D R +EEM++ P
Sbjct: 492 VKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPD 551
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++GLC L + F + + G + +++ Y E G+ +
Sbjct: 552 LTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYD 611
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + P V+ +F +I +A + RL+ M K+G+
Sbjct: 612 EMLRKRLYPSVITYFV--LIYGHAKAGRLEQAFQYSTEMKKRGV 653
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 16/181 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A M G FN LI G A + + M+
Sbjct: 313 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 372
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ Y P + TY+ +I G +D + ++ A +V +Y +L+HG +K F
Sbjct: 373 NAGIY-PTTSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKF 427
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++++ + I PSI +++GLC L+ G ++ E M +L
Sbjct: 428 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLE-----------GAQRLKEEMTTQL 476
Query: 291 V 291
+
Sbjct: 477 I 477
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 4/233 (1%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG E D + +I GK V ++ +F ME G++ +++L L
Sbjct: 69 LDMPKKGLEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVILRR 128
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F M++ E +P T++ I GF G V+ N ++ + + +V T
Sbjct: 129 GRFMMAKRYFNKMLN-EGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDVIT 187
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI+G + + + +R++ EM I P++ +++G + ++D S ++ +
Sbjct: 188 YNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMK 247
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP---EVLLHFFSG 326
G G K N L+ C ++ E + L+ + +P + L SG
Sbjct: 248 GFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISG 300
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-AL 163
E + Y LI V V A+ + M+ GIKP++ +++L+ LC+ + ++ A
Sbjct: 217 EPTVITYTTLIKGYVSVDRVDDALSLMEEMKGFGIKPNAITYSTLLPG-LCNAEKMSEAQ 275
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
S+ + MV ++ + ISG GN+DA A I Y LI
Sbjct: 276 SILKEMVDKYIAPTDNSIFLKLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEN 335
Query: 224 SLKARDFDSVDRFYEEMMSLGII 246
KA +D ++++ II
Sbjct: 336 YCKAEKYDKAVNLLDKLIEKDII 358
>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 753
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 5/249 (2%)
Query: 74 WDALITSLQSSSPKKAQLVLEWR--LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHV 130
WD + + S KA +V E +KM + G E + Y L + + A V
Sbjct: 175 WDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRV 234
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M GI+P +N ++ S + TA+ ++ M + P+ TY+ I+GF
Sbjct: 235 FNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDM-KNRGISPDVVTYNTMINGFY 293
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
++ K + + V +Y ++I G + D R EEM S I P++
Sbjct: 294 RFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVH 353
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLET 309
+L GLC K+ K L ++ +N + +L+ C C+ G + E+ L T
Sbjct: 354 TYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNT 413
Query: 310 LTKCNQSPE 318
+ + + E
Sbjct: 414 MMRLHIPTE 422
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 3/220 (1%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
D + +I + G+ + A + M +G++ D +F LI + +G V A+ +F
Sbjct: 143 DTHMKIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNK 202
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + + + K+YDA G + + + G TY ++ G +
Sbjct: 203 M-NELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSL 261
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
++ RFY++M + GI P + ++ G +K++ + + G
Sbjct: 262 RLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYT 321
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
++K Y + RVD+ LE + N P V H +S ++
Sbjct: 322 TMIKGYVAVDRVDDGLRLLEEMKSFNIKPNV--HTYSTLL 359
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
+Y C +GK A F + +G++ D FN+LIC G +A +F+IM
Sbjct: 474 QYLCSHGQTGK------AEIFFRQLMKKGVQ-DPLAFNNLICGHAKEGYPDSAFEIFKIM 526
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ Y I + G + G + + S++ +
Sbjct: 527 -GKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGHVPDPSVFRSVMESLFEDGR 585
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ R + M+ G+ ++ ++ K+LE L R ++ ++ L+ G+ +N
Sbjct: 586 VQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEALGRIELLMQSGFHVN 639
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 121/316 (38%), Gaps = 38/316 (12%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119
D V F +Q S+ LI L KA L + R+D L + + Y +I
Sbjct: 163 DKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVM--YNTIIDGVC 220
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL-------------- 165
K + V A ++ M A+ I P +N+LIC G + A+ L
Sbjct: 221 KDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVY 280
Query: 166 -FEIMVSS-------------------EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F I+V + ++ KPN TY++ ++G+ + V+ +
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
G + +V +Y +I G K + D + +EEM I P + +++GLC ++
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRI 400
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+ + G N L+ C+ VD+ E L L N P V ++
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCT--YN 458
Query: 326 GIIRLYALSDRLDDVE 341
+I S RL D +
Sbjct: 459 ILINGLCKSGRLKDAQ 474
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 122/290 (42%), Gaps = 7/290 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF+++ +G +PD+ +LI GD+ AL F V + ++ N +Y I+G
Sbjct: 126 VFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALH-FHDKVLALGFQLNQVSYRTLINGL 184
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G A + ++V Y ++I G K + + FY EM++ I P++
Sbjct: 185 CKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTV 244
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC +L L ++ LV +C+ G+V E +
Sbjct: 245 VTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVV 304
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ K + P ++ ++ ++ Y L + ++ E M + G++ ++I + +
Sbjct: 305 MMKKDVKPNIVT--YNSLMNGYCLVNEVNKAESIFNTMAQIGVA-PDVHSYSIMISGFCK 361
Query: 370 CAAYDR-LDLFLD-HIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D + LF + H K + TY+ L+ G ++G +I EM
Sbjct: 362 IKMVDEAMKLFEEMHCKQIFP-DVVTYNSLIDGLCKSGRISYALKLIGEM 410
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 68 NSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
N + +++ L+ + + K+A+ V + K +K N + Y L+ V V
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPN---IVTYNSLMNGYCLVNEVNK 332
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A +F +M G+ PD + S++ + C +V A+ LFE M + + P+ TY++
Sbjct: 333 AESIFNTMAQIGVAPDVHSY-SIMISGFCKIKMVDEAMKLFEEMHCKQIF-PDVVTYNSL 390
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G G + K G N+ TY SL+ K D ++ I
Sbjct: 391 IDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNI 450
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
PS+ ++ GLC +L + + +L G+ I+ ++K +C+ G V
Sbjct: 451 QPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 1/175 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++G++P +N ++ S + TA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L FE M + P+ T++ I+GF +D K + +V +Y ++I
Sbjct: 275 LRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIK 333
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
G L D R +EEM S GI P+ +L GLC K+ K+ LK ++
Sbjct: 334 GYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG D + LI GK V ++ +F M+ G++ +NSL L
Sbjct: 174 LDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRR 233
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F MV SE +P TY+ + GF ++ +++ G S + T
Sbjct: 234 GRYMMAKRYFNKMV-SEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDAT 292
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++I+G + + D ++ + EM I PS+ +++G A ++D + +
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMR 352
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G + N L+ C+ G++ E + L+ + + +P+
Sbjct: 353 SSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+++G+ D +N LI LC + + L + PN TY+ I
Sbjct: 247 AIELLDHMKSKGVDADVCTYNMLIHD-LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GFS+ G V ++ ++ G S N T+ +LI G + +F + + M + G+
Sbjct: 306 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L+GLC + D + F + G + ++ C+ G +DE
Sbjct: 366 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L ++K P+++ +S +I + R + V R+ + GLS
Sbjct: 426 LNEMSKDGIDPDIVT--YSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD + ++ +++ LI L +S+ K L+L +M+ NE Y LI
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---TYNTLING 307
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V A + M + G+ P+ FN+LI + G+ AL +F M+ ++ P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTP 366
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y + G D +Y G V TY +I G K D
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLL 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM GI P I ++ G C + K + + G N + L+ C +
Sbjct: 427 NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRM 486
Query: 298 GRVDE 302
G + E
Sbjct: 487 GCLKE 491
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV A + + G+ P+ ++++LI C G + A+ ++E M+
Sbjct: 441 YSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 500
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + T++ ++ G V ++ + G N +++ LI+G + +
Sbjct: 501 L-EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM +G P+ +L+GLC L + FLK L ++ M L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619
Query: 291 VKCYCELGRV 300
+ C+ G +
Sbjct: 620 LTAMCKSGNL 629
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 37/288 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL------- 163
Y L+ K N+ A+ +F M + I PDS + SLI G V A+
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 164 -------------SLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNV 195
+ M + ++K P+ T +A I G+S +G +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ N N+ TY L+HG K +D + Y ++ GI+P +
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G+C L+ LK + G +++ L+ C G ++ + ++ +T
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
S + ++ + + R + + M KQG+S +S + + ++
Sbjct: 856 SLDK--DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLI 901
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV M TS GI P++ F+ LI SG+ + A S+F+ M + P
Sbjct: 521 AGKVAEAEEFMRCMTS---DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH-P 576
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + + G G++ K+ + A +V+ Y +L+ K+ + +
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRK 264
EM+ I+P ++ GLC + K
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGK 663
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A GK + M+ + P A F +L+ C +G+V+ AL L +++S+
Sbjct: 939 LAKCGKADEATLLLRFMLKMK---LVPTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCG 994
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--FDS 232
K + +Y+ I+G + G++ + Y GF N TY++LI G L AR+ F
Sbjct: 995 LKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLL-ARETAFSG 1053
Query: 233 VDRFYEEMMSLGIIPSIPI 251
D +++++ G I S+ +
Sbjct: 1054 ADIILKDLLARGFITSMSL 1072
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 7/255 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + +++ALI S K L + + M++ E + + L G +N
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFY----MMEAKGLTPSEVSYGVLLDGLCKNA 382
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
F A + M+ G+ + +I +G + A+ L M S + P+ TY
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTY 441
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I+GF +G + G S N Y +LI+ + R YE M+
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G ++ LC K+ + F++ + G N L+ Y G +
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 303 LEEQLETLTKCNQSP 317
+ +TK P
Sbjct: 562 AFSVFDEMTKVGHHP 576
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 77/182 (42%), Gaps = 4/182 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G +Q+ ++ +F M G P N+++ + + SG+ V+ S + M+ + P+
Sbjct: 137 GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLK-RKICPD 192
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I+ + G+ + + +G++ + TY +++H K F + +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G+ + ++ LC ++ + L+ + NE L+ + G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 299 RV 300
+V
Sbjct: 313 KV 314
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 136/355 (38%), Gaps = 61/355 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + NV AM +F M+ G KP ++ FN+LI +G L + +M
Sbjct: 131 YNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMS 190
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL---------- 220
KPN +TY+ + + S N++ +A+G +V TY L
Sbjct: 191 LDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGET 250
Query: 221 -------------------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
++G K + RF M LG+ P++ I +
Sbjct: 251 LRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSL 310
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G D V L + G K + ++ + G +D+ +E + K
Sbjct: 311 IKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGI 370
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF---RCAA 372
P++ H FS + + Y + ++ E + M K G+ +VIC+ C+A
Sbjct: 371 EPDI--HAFSILAKGYVRAGETENAESVLTSMAKSGVR------PNVVICTTIISGWCSA 422
Query: 373 ---------YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y++ + I S L+ T++ L+ GY A GK + ++ M+
Sbjct: 423 GKMENAKMVYEK----MCEIGISPNLK--TFETLIWGYAEARQPGKAEELLQLME 471
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/337 (20%), Positives = 146/337 (43%), Gaps = 15/337 (4%)
Query: 86 PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
P +A L+ + ++ G+ L Y L+A K+++ + + +E G+KPDS +
Sbjct: 74 PHEANLIFDNLVED---GHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSIL 130
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAA 204
+N++I A SG+V A+ +F+ M + KP + T++ I G+ + G + + +
Sbjct: 131 YNAMINAFSESGNVKEAMKIFQKMKDT-GCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLM 189
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++ N +TY L+ ++ + +M++ GI P + + + +
Sbjct: 190 SLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGE 249
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
R + + + NE +V YC+ G + E + + + P +++ F
Sbjct: 250 TLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVI--F 307
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRL-DLFL 380
+ +I+ + D V+ ++ M + G+ DV ++ ++ D+ ++F
Sbjct: 308 NSLIKGFLDITDTDGVDEALTLMEEYGVK----PDVITFSTIMNAWSSAGLMDKCQEIFN 363
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D K + + L GY RAG + +SV+ M
Sbjct: 364 DMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSM 400
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 13/232 (5%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
L+LE + +K+ +E C I ++G K N+ A+ M+ G+ P+ +FNS
Sbjct: 256 LILEMQYEKVAP------NERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNS 309
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI L D+ + E + EEY KP+ T+ ++ +SS G +D + +
Sbjct: 310 LIKGFL---DITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMA 366
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
AG ++ + L G ++A + ++ + M G+ P++ I ++ G C+ K++
Sbjct: 367 KAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKME 426
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
K + + G N + L+ Y E + + EE L+ + + PE
Sbjct: 427 NAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPE 478
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+F M GI+PD F+ L + +G+ A S+ M S +PN ISG
Sbjct: 360 EIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSG-VRPNVVICTTIISG 418
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ S G ++ Y G S N++T+E+LI G +AR + + M G+ P
Sbjct: 419 WCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPE 478
Query: 249 IPILEKVLEG------LCARRKLDRVK 269
++ V + LC +++ +++
Sbjct: 479 KSTIQLVADAWRNIGLLCEAKRITKIE 505
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 115/302 (38%), Gaps = 42/302 (13%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD +K N+ Y L+ +N+ A +V M A GI+PD +N L A
Sbjct: 191 LDGSVKPNDRT---YNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQK 247
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G+ + A L + + E+ PN +T ++G+ GN+ ++ G N+
Sbjct: 248 GETLRAEDLI-LEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVI 306
Query: 217 YESLIHGSLKARDFDSVDR-----------------------------------FYEEMM 241
+ SLI G L D D VD + +M
Sbjct: 307 FNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMA 366
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
GI P I + +G + + +S L + G + N + ++ +C G+++
Sbjct: 367 KAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKME 426
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ E + + SP L F +I YA + + E + M ++G+ F ++
Sbjct: 427 NAKMVYEKMCEIGISPN--LKTFETLIWGYAEARQPGKAEELLQLMEEKGV-FPEKSTIQ 483
Query: 362 MV 363
+V
Sbjct: 484 LV 485
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 7/188 (3%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
T ME G+KPD F++++ A +G + +F M + +P+ + G
Sbjct: 325 EALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAG-IEPDIHAFSILAKG 383
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G + + +G NV ++I G A ++ YE+M +GI P+
Sbjct: 384 YVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPN 443
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY------CELGRVDE 302
+ E ++ G R+ + + L+ + G ++ Q + + CE R+ +
Sbjct: 444 LKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEKSTIQLVADAWRNIGLLCEAKRITK 503
Query: 303 LEEQLETL 310
+EE+ E L
Sbjct: 504 IEEEDEEL 511
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 3/230 (1%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G + + Y ++ K + + A + M + G P+ F +L+ G V
Sbjct: 198 RGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHD 257
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
ALS++ MV E + P++ +Y+ I G +G++ ++ + N TY +L+
Sbjct: 258 ALSMWHWMVD-EGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLV 316
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G A D D + EM S G P++ + +++ LC + D+ +S + +L
Sbjct: 317 DGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCP 376
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFFSGIIR 329
N L+ C+ GRV + + C+ + G+ R
Sbjct: 377 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFR 426
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ +M G+ P+ +N LI A LC D V A +S + P+ ++ +SG
Sbjct: 91 VYDNMRKAGVDPNVYTYNLLIRA-LCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGM 149
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
LG V+ + A +V VQ +Y +++H V EM+ G+ P+
Sbjct: 150 CKLGRVEEARGFLAE------TVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPN 203
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ +++ C R+L + L ++ G N LVK + E G+V +
Sbjct: 204 VVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHD 257
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 1/149 (0%)
Query: 184 AFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I F+ G+ D A+ +Y A+ V+ Y L+ L+ +V Y+ M
Sbjct: 38 AAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRK 97
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G+ P++ ++ LC ++D + L + G +E +V C+LGRV+E
Sbjct: 98 AGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEE 157
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
L S ++H G R++
Sbjct: 158 ARGFLAETVPVQASYNAVVHALCGEFRMW 186
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 3/220 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ + +A V + G +PD+ FN+LI G + AL LF+ + E ++P+
Sbjct: 197 HLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG-EGFQPDV 255
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY ++G +GN A + + + NV Y ++I K R + E
Sbjct: 256 VTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSE 315
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ GI P I ++ LC + V + L ++ N + +V C+ G
Sbjct: 316 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 375
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + ++ + K P+V+ ++ ++ + L +D+
Sbjct: 376 IAIAHDVVDMMIKRGVEPDVVT--YTALMDGHCLRSEMDE 413
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 5/203 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMVSSEEYKP 177
K + V A ++F+ M +GI PD +NSLI A LC VT +L MV+S + P
Sbjct: 302 KDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT--TLLNEMVNS-KIMP 358
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N + + G + + I G +V TY +L+ G + D + +
Sbjct: 359 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 418
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ M+ G +P++ ++ G C +++D+ L+ + G + L+ C +
Sbjct: 419 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV 478
Query: 298 GRVDELEEQLETLTKCNQSPEVL 320
GR+ + Q P+++
Sbjct: 479 GRLQHAIALFHEMVASGQIPDLV 501
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + Y LI ++Q + AM + M QG+ D+ +N+LI G +
Sbjct: 424 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 483
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A++LF MV+S + P+ TY + ++ A + ++ Y I
Sbjct: 484 AIALFHEMVASGQI-PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAI 542
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G +A + ++ + + S G+ P + ++ GLC R LD + K
Sbjct: 543 DGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFR-------K 595
Query: 282 INEN 285
++EN
Sbjct: 596 MDEN 599
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 28/323 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS----LF 166
Y+ LI++ GK AM +F+ M+ G +PD++V+N+LI A L + D AL F
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYF 195
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E +PN TY+ + F+ G VD +N + + S +V T+ ++ K
Sbjct: 196 DKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGK 255
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ +++ ++++ K L+ K
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ Y + +D+ E + + N P + + +I +Y G
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFIT--YECMIMMYGY----------CGS 363
Query: 347 MGKQGLSFKSAEDVEMVICS---------YFRCAAYDRLDLFLDHIKGSYKLR--RATYD 395
+ + F+ D E V+ + Y R Y D H ++++ +TY
Sbjct: 364 VSRAREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEADKLF-HNASAFRVHPDASTYK 422
Query: 396 FLVAGYRRAGLSGKLDSVINEMK 418
FL Y +A + + ++ +M+
Sbjct: 423 FLYKAYTKADMKEHVQILMKKME 445
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IA ++ + AM F M A G+KPD+ V+NSLI G++V A L M+
Sbjct: 440 YGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMM 499
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +PN+ +++ I+ G V + I G +V T+ SLI G
Sbjct: 500 SRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKM 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + M+S+GI P + +L+G C ++D + +L G K
Sbjct: 560 EKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVK 610
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 6/214 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F SM A+G KPD ++ L+ G VV L+LF M + +S Y+ I
Sbjct: 351 AAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHS-VYNILI 409
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGI 245
+ G +D + G + TY ++I S R D++D+F +M+++G+
Sbjct: 410 DAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKF-NQMIAMGL 468
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KINENMAQKLVKCYCELGRVDELE 304
P + +++G C L + K + ++ G + N ++ C+ GRV E +
Sbjct: 469 KPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQ 528
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ + + + P+V+ F+ +I Y L +++
Sbjct: 529 DIFDLVIHIGERPDVIT--FNSLIDGYGLVGKME 560
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 4/205 (1%)
Query: 101 LKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
++GN D Y LI GK + AM +FT M+ +G+ PD+ + ++I A G
Sbjct: 393 MEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGR 452
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTY 217
+ A+ F M++ KP++ Y++ I GF GN+ + + ++ G N +
Sbjct: 453 LADAMDKFNQMIAMG-LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFF 511
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
S+I+ K ++ ++ +G P + +++G K+++ L ++
Sbjct: 512 NSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMIS 571
Query: 278 GGWKINENMAQKLVKCYCELGRVDE 302
G + + L+ YC GR+D+
Sbjct: 572 VGIEPDVVTYSALLDGYCRNGRIDD 596
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 123 NVPFAMHVFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
N+ A + + M ++GI +P++ FNS+I + G VV A +F++++ E +P+ T
Sbjct: 487 NLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGE-RPDVIT 545
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+++ I G+ +G ++ A I+ G +V TY +L+ G + D + EM+
Sbjct: 546 FNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREML 605
Query: 242 SLGIIPSIPILEKVLEGL 259
S G+ P+ +L GL
Sbjct: 606 SKGVKPTTITYGIILHGL 623
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTAL--SLFEIMVSSEEYKP 177
V FA+ F G+K D V N L+ CLC S D V L + E+ V +P
Sbjct: 137 VGFAL--FGRFLKTGLKTDVIVANILL-KCLCHAKRSDDAVNVLLHRMPELGV-----EP 188
Query: 178 NSKTYDAFISGF----SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
++ +Y + S +D ++ + G S NV +Y ++IHG + +
Sbjct: 189 DTISYSTVLKSLCEDSRSQRALDLLHTMVKK--SGGCSPNVVSYNTVIHGFFREGEVSKA 246
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ EMM G++P + ++ LC R +D+ + L+ ++ G++ ++ ++
Sbjct: 247 CNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHG 306
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVL 320
Y LG+ E +T+ P++
Sbjct: 307 YSILGQWKETAGMFREMTRRGLMPDIF 333
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 105/270 (38%), Gaps = 8/270 (2%)
Query: 40 SNPLISRLLQVPVSQIKTTLDSVDIF-------AFNSSQFSWDALITSLQSSSPKKAQLV 92
++ +++ +L + K + D+V++ S+ ++ SL S + L
Sbjct: 152 TDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALD 211
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
L + K G + Y +I + V A ++F M QG+ PD ++S I A
Sbjct: 212 LLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDA 271
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC + L + S ++P+ TY+ I G+S LG + G
Sbjct: 272 -LCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMP 330
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
++ T S + K F++ M + G P + +L G A + + +
Sbjct: 331 DIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLF 390
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ G G + ++ L+ Y + G +DE
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDE 420
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F + G +PD FNSLI G + A + + M+S +P+ TY A +
Sbjct: 527 AQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG-IEPDVVTYSALL 585
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ G +D + ++ G TY ++HG + EM+ G
Sbjct: 586 DGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTT 645
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I +L GLC D + K L K N + ++ ++ + +E E
Sbjct: 646 MDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANEL 705
Query: 307 LETLTKCNQSP 317
++++ P
Sbjct: 706 FDSISATGLVP 716
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 3/220 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI G V + A V +M + GI+PD +++L+ +G + L LF M+
Sbjct: 546 FNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREML 605
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + KP + TY + G + G K I +G ++++ T ++ G +
Sbjct: 606 S-KGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCD 664
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D ++++ ++ + +I I+ +++ + RK + + G N + +
Sbjct: 665 DEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVM 724
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ + G V+E + + K +P L + IIR+
Sbjct: 725 ITNLLKEGSVEEADNMFSLMEKSGCAPSSRL--LNNIIRV 762
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M ++G PD +N+L+ A G V A+ + +SS+ P TY+ I
Sbjct: 353 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN-QLSSKGCSPVLITYNTVI 411
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G + K G ++ TY SL+ G + D +F+ ++ LGI
Sbjct: 412 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 471
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
P+ ++ GLC R+ DR FL +++ K E
Sbjct: 472 PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 509
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 155/407 (38%), Gaps = 54/407 (13%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE- 110
+I L +D +++ ++ +L S K+A VL+ +L K C +
Sbjct: 141 GEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK------ECYPDV 194
Query: 111 --YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y LI + K V AM + M +G KPD +N LI G + A+
Sbjct: 195 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 254
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH----GS 224
M S +PN T++ + S G K + + G S +V T+ LI+
Sbjct: 255 M-PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 313
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
L R D E+M G P+ +L G C +K+DR +L ++ G +
Sbjct: 314 LLGRAID----ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 369
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII---------RLYALSD 335
L+ C+ G+VD E L L+ SP VL+ + + I R L D
Sbjct: 370 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP-VLITYNTVIDGLSKVGKTERAIKLLD 428
Query: 336 RL-------DDVEYS-----VGRMGKQGLSFKSAEDVE------------MVICSYFRCA 371
+ D + YS + R GK + K D+E ++ +
Sbjct: 429 EMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSR 488
Query: 372 AYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
DR +D I K ATY L+ G GL+ + ++NE+
Sbjct: 489 QTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 7/202 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK + + M + +E G PD +N LI SG++ AL + + M P+
Sbjct: 106 GKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM----NVAPD 158
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ + G + + + +V TY LI + K + +
Sbjct: 159 VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLD 218
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM + G P + ++ G+C +LD FL + G + N +++ C G
Sbjct: 219 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 278
Query: 299 RVDELEEQLETLTKCNQSPEVL 320
R + E+ L + + SP V+
Sbjct: 279 RWMDAEKLLSDMLRKGCSPSVV 300
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 6/228 (2%)
Query: 34 STSVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLV 92
S SV + N LI+ L Q + + L+ + + + S++ L+ KK
Sbjct: 296 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF--CKEKKMDRA 353
Query: 93 LEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+E+ LD M+ +G + Y L+ K V A+ + + ++G P +N++I
Sbjct: 354 IEY-LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 412
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G A+ L + M + KP+ TY + +SG S G VD K++ G
Sbjct: 413 GLSKVGKTERAIKLLDEM-RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 471
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
N TY S++ G K+R D F M+S P+ ++EG+
Sbjct: 472 PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 519
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 21/300 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +VF M+++G++ FN++I +GD+ A +L M S P+ TY A I
Sbjct: 259 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM-SEAGVTPDVYTYGALI 317
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G ++ + G N + LI K D +++ + EM G+
Sbjct: 318 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 377
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P ++ GLC R L + + G + + L+ YC+ EE+
Sbjct: 378 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCK-------EEE 430
Query: 307 LETLTKCNQS--------PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
L+ + Q+ EV ++ +I + + R D E +G M + GL +
Sbjct: 431 LDMAMEIKQNMVAEGVGLDEVT---YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTT 487
Query: 359 DVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
MVI ++ R L L + K TY+ ++ G+ + G D ++N M
Sbjct: 488 -YTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 546
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 5/248 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ ALI L + + A+ V E + +K N + LI K + + +
Sbjct: 311 YTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV---FTILIDAHCKKGDAETMLEL 367
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +G++PD+ +N+++ LC + + S + + S +P++ TY I G+
Sbjct: 368 HREMRERGVRPDAVTYNAIVNG-LCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 426
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + +A G ++ TY +LI G KA +R EMM G+ P
Sbjct: 427 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 486
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
V++ C + + LK + G K ++ +C+LG++ + L +
Sbjct: 487 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 546
Query: 311 TKCNQSPE 318
SP+
Sbjct: 547 INIGVSPD 554
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 1/217 (0%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ +LE + +G Y ++ + +++ A + M + G++PD+ + +
Sbjct: 361 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 420
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
LI ++ A+ + + MV+ E + TY A ISG S G + + A
Sbjct: 421 LIDGYCKEEELDMAMEIKQNMVA-EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 479
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G + TY +I + D + R +EM + G P + ++ G C ++
Sbjct: 480 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA 539
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
L ++ G ++ L+ +C+ G+V ++EE
Sbjct: 540 DMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEE 576
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 99/242 (40%), Gaps = 4/242 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +K ++ + LG + + + + G V ++ ++I G +A D D +
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M G+ P + +++GLC +++ + + + G G K N + L+ +C+
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G + + E + + P+ + ++ I+ + L V M GL +
Sbjct: 358 KGDAETMLELHREMRERGVRPDAVT--YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 415
Query: 357 AEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
+I Y + D +++ + + L TY L++G +AG S + V+
Sbjct: 416 VT-YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 474
Query: 416 EM 417
EM
Sbjct: 475 EM 476
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 21/300 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +VF M+++G++ FN++I +GD+ A +L M S P+ TY A I
Sbjct: 135 AQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM-SEAGVTPDVYTYGALI 193
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G ++ + G N + LI K D +++ + EM G+
Sbjct: 194 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 253
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P ++ GLC R L + + G + + L+ YC+ EE+
Sbjct: 254 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCK-------EEE 306
Query: 307 LETLTKCNQS--------PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
L+ + Q+ EV ++ +I + + R D E +G M + GL +
Sbjct: 307 LDMAMEIKQNMVAEGVGLDEVT---YTALISGLSKAGRSADAERVLGEMMEAGLEPDNTT 363
Query: 359 DVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
MVI ++ R L L + K TY+ ++ G+ + G D ++N M
Sbjct: 364 -YTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 422
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 5/248 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ ALI L + + A+ V E + +K N + LI K + + +
Sbjct: 187 YTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV---FTILIDAHCKKGDAETMLEL 243
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +G++PD+ +N+++ LC + + S + + S +P++ TY I G+
Sbjct: 244 HREMRERGVRPDAVTYNAIVNG-LCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 302
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+D + +A G ++ TY +LI G KA +R EMM G+ P
Sbjct: 303 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 362
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
V++ C + + LK + G K ++ +C+LG++ + L +
Sbjct: 363 TYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAM 422
Query: 311 TKCNQSPE 318
SP+
Sbjct: 423 INIGVSPD 430
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 1/217 (0%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ +LE + +G Y ++ + +++ A + M + G++PD+ + +
Sbjct: 237 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 296
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
LI ++ A+ + + MV+ E + TY A ISG S G + + A
Sbjct: 297 LIDGYCKEEELDMAMEIKQNMVA-EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 355
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G + TY +I + D + R +EM + G P + ++ G C ++
Sbjct: 356 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA 415
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
L ++ G ++ L+ +C+ G+V ++EE
Sbjct: 416 DMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEE 452
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 99/242 (40%), Gaps = 4/242 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P +K ++ + LG + + + + G V ++ ++I G +A D D +
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M G+ P + +++GLC +++ + + + G G K N + L+ +C+
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
G + + E + + P+ + ++ I+ + L V M GL +
Sbjct: 234 KGDAETMLELHREMRERGVRPDAVT--YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 291
Query: 357 AEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415
+I Y + D +++ + + L TY L++G +AG S + V+
Sbjct: 292 VT-YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG 350
Query: 416 EM 417
EM
Sbjct: 351 EM 352
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 121/290 (41%), Gaps = 8/290 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN-ESCLD 109
V + T + + F + ++ LI L +S KKA + + + KG L
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFK---EMKRKGRFIPDLK 260
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y L+ G +++ V+ M GIKPD + LI A SG A+ +F M
Sbjct: 261 TYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEM 320
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S P+ Y I+G S+ +D K++ + +GF + V T ++I +A +
Sbjct: 321 EESG-CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
F + +EM GI P+ + +L L K++ + + + G + N
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+V +C RVD + + + + P +H FS +I +RL++
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLP--CMHMFSALINGLCFENRLEE 487
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 7/232 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL--DEYACLIALSGKVQN 123
F S + LI +L K Q L W L + ++ SCL D + ++ + +
Sbjct: 149 GFRYSAEGFHNLIEALG----KIKQFRLVWSLVEAMRCR-SCLSKDTFKIIVRRYARARK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ F M + G+K D + +N LI S V A ++F+ M + P+ KTY
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYT 263
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G+ ++ + Y + AG +V Y LI K+ D + + EM
Sbjct: 264 VLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEES 323
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
G +PS + ++ GL + +LD + + G+ + ++ YC
Sbjct: 324 GCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYC 375
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G ++ + A+ F + G + N++I A + + A + + M
Sbjct: 332 YCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMR 391
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN++TYD ++ ++ + G + TY ++
Sbjct: 392 KSG-IGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERV 450
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +++M G++P + + ++ GLC +L+ + + +L G + + L
Sbjct: 451 DMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNL 510
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+ E GR+ +E + L ++P
Sbjct: 511 KEALVEGGRITLAQEVTQRLEMLRRTP 537
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/397 (22%), Positives = 158/397 (39%), Gaps = 33/397 (8%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAF----NSSQFSWDALITSLQSSS--P 86
NS +N +++++++ P S + LDSV +F F SS +D LI S +
Sbjct: 116 NSELFGLANGVLTQMIRTPYSS-SSILDSV-LFWFRNYGGSSPVVFDILIDSYKRMGMLD 173
Query: 87 KKAQLVLEWRLDKML--------------KGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ A + + D +L KG Y + A + + + A F
Sbjct: 174 EAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFE 233
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ G+KPD ++LI + GD+ L + ++MVS N TY+ I G
Sbjct: 234 EMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG-IPINLITYNVLIHGLCKF 292
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G ++ + I G N +T+ LI G + + +EM ++PS
Sbjct: 293 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ GLC + L L+ + G K N + L+ Y GR++E L+ ++
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 412
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA- 371
+P++ ++ II + + ++++ + + +GL A I Y +
Sbjct: 413 SGVAPDIFC--YNAIISCLSKAGKMEEASTYLLEIQGRGLK-PDAVTFGAFILGYSKTGK 469
Query: 372 ---AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
A D LDH Y L+ G+ +AG
Sbjct: 470 MTEAAKYFDEMLDH---GLMPNNPLYTVLINGHFKAG 503
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + F ++A+I+ L S K + + L+ +G + +
Sbjct: 400 IEEARRLLDGMSCSGVAPDIFCYNAIISCL--SKAGKMEEASTYLLEIQGRGLKPDAVTF 457
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
I K + A F M G+ P++ ++ LI +G+++ ALS+F +
Sbjct: 458 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR-HLH 516
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ P+ +T AFI G G V K ++ G +V TY SLI G K + +
Sbjct: 517 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 576
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++EM GI P+I I +++GLC + R + + G + + ++
Sbjct: 577 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 636
Query: 292 KCYCELGRVDE 302
YC+ V E
Sbjct: 637 DGYCKSENVAE 647
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 122/300 (40%), Gaps = 42/300 (14%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G+VQ A+ VF+ ++ +G+ PD ++SLI G+V A L + M + P
Sbjct: 537 NGRVQE---ALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL-KGIAP 592
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N Y+A + G G++ K + G + TY ++I G K+ + +
Sbjct: 593 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 652
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM S G+ P + ++ G C +++ + + +L G+ + L+ YC+
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSF-NTLIDGYCKS 711
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++ E + + + P+ + ++ +I D G+M + L FK
Sbjct: 712 CKIQEASQLFQEMIAKQIMPDHVT--YTTVI----------DWHCKAGKMEEANLLFKEM 759
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ +++ + TY L+ GY + G S ++ ++ +M
Sbjct: 760 QERNLIVDT-------------------------VTYTSLMYGYNKLGQSSEVFALFEKM 794
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 121/302 (40%), Gaps = 39/302 (12%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F ++AL+ L +S ++A+ + + +K L+ + Y+ +I K +NV A +
Sbjct: 595 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT---YSTMIDGYCKSENVAEAFSL 651
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS------------------- 171
F M ++G++P S V+N+L+ C GD+ A++LF M+
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 711
Query: 172 --------------SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+++ P+ TY I G ++ N + V+ TY
Sbjct: 712 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 771
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SL++G K V +E+M++ G+ P V+ C L ++G
Sbjct: 772 TSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVG 831
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G + L+ C+ + E + L+ + + P L S ++R + + ++
Sbjct: 832 KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS--LAACSTLVRSFHEAGKM 889
Query: 338 DD 339
D+
Sbjct: 890 DE 891
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA ++ NV A + +M+++GI P A ++SLI C G V A +FE M
Sbjct: 644 YNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEM- 702
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E PN Y A I G LG +D + + G N TY +I G K +
Sbjct: 703 RNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNM 762
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
EM+ GI P + +G C R+L
Sbjct: 763 KEARELLNEMIRNGIAPDTVTYNALQKGYCKEREL 797
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME G+ P+ +N++I SG AL + MV S+ P+ TY I
Sbjct: 274 AVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSK-VNPSVVTYGVLI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG L + N+ + GF+ N + +LI G + D R +EM G+
Sbjct: 333 SGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMK 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
P+ +L+G C ++++ + L ++L G +N ++ ++
Sbjct: 393 PNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVI 437
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 36/214 (16%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ V M +G+ D +N+LI C G + A L E MV +E++P++ TY
Sbjct: 516 NMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQ-QEFQPDTYTY 574
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE--- 239
+ + G + +G +D +++ GF NV TY L+ G KA + +F++
Sbjct: 575 NFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDY 634
Query: 240 --------------------------------MMSLGIIPSIPILEKVLEGLCARRKLDR 267
M S GI+P+ ++ G+C ++D
Sbjct: 635 EKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDE 694
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
K + + G N L+ +C+LG++D
Sbjct: 695 AKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMD 728
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+A GK+ +V +H + G P+ + +L+ C D + F + E+
Sbjct: 581 LADMGKIDDVHRLLH---EAKEYGFVPNVYTY-ALLLEGYCKADRIEDAVKFFKNLDYEK 636
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ +S Y+ I+ + +GNV K A + G TY SLIHG D
Sbjct: 637 VELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAK 696
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+EEM + G++P++ ++ G C ++D V S L + G + N+ ++ Y
Sbjct: 697 EIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGY 756
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+LG + E E L + + +P+ + +
Sbjct: 757 CKLGNMKEARELLNEMIRNGIAPDTVTY 784
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 1/186 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ K + A+ F +++ + ++ S V+N LI A G+V A L + M
Sbjct: 609 YALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAM- 667
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P TY + I G +G VD + + G NV Y +LI G K
Sbjct: 668 KSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQM 727
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D V EM S GI P+ +++G C + + L ++ G + L
Sbjct: 728 DIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNAL 787
Query: 291 VKCYCE 296
K YC+
Sbjct: 788 QKGYCK 793
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 2/201 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ K++ A V M + G P+ VFN+LI GD+ AL + + M
Sbjct: 328 YGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEM- 386
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + KPN T++ + GF ++ + +++G SVN+ +IH ++ F
Sbjct: 387 AMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGF 446
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQK 289
S + +++S I S +L ++ GLC + ++ + K G N +
Sbjct: 447 VSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNA 506
Query: 290 LVKCYCELGRVDELEEQLETL 310
L+ CE G ++E+ E L+ +
Sbjct: 507 LLHGLCERGNMEEVFEVLKQM 527
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 10/241 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F +G+ P N L+ + + + ++ + +F++ + + P+ T+ I
Sbjct: 205 AFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDL--ACQGVAPDVFTFTTAI 262
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G V + G NV TY ++I G K+ F+ RF + M+ +
Sbjct: 263 NAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVN 322
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ ++ GL + L + G+ NE + L+ YC G + E
Sbjct: 323 PSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRV 382
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + P + F+ +++ + S++++ E + + GLS V M +CS
Sbjct: 383 RDEMAMKGMKPNFVT--FNTLLQGFCRSNQMEQAEQVLVYILSSGLS------VNMDVCS 434
Query: 367 Y 367
Y
Sbjct: 435 Y 435
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + T + + I+ ++ L+ C C G A+ L+ + + + N+ T +A
Sbjct: 449 ALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHS-EAIELWFKLAAVKGLAANTVTSNAL 507
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G GN++ + + + G ++ +Y +LI G K + + EEM+
Sbjct: 508 LHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEF 567
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P +++GL K+D V L G+ N L++ YC+ R+++
Sbjct: 568 QPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIED 624
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVEN-GCQPDMVTYNSI 199
Query: 186 ISGFSSLGNV----DAMNKWYAANIAA-------------------------------GF 210
++G G+ D + K N+ A G
Sbjct: 200 VNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 377
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGL 399
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 426 FQEMVSHGVLPDVMTY 441
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 312 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + ++ ++I G V A +LF + + KP
Sbjct: 451 NGKLEK---ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 506
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G + N TY +LI L+ D + +
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLI 566
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
EEM S G ++ V++ L + +LD KSFL L
Sbjct: 567 EEMKSCGFSADASSIKMVIDMLLS-GELD--KSFLDML 601
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)
Query: 134 MEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E GI + N +I C C C L ++M Y+P++ T++ I+G
Sbjct: 114 LELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVM--KLGYEPDTTTFNTLINGLCLE 171
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G V + G ++ TY S+++G ++ D +M + +
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTY 231
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ LC +D S K + G K + LV+ C+ G+ ++ L+ +
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
P V+ F+ ++ ++ +L + M +G+S
Sbjct: 292 REIVPNVIT--FNVLLDVFVKEGKLQEANELYKEMITRGIS 330
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 125/279 (44%), Gaps = 9/279 (3%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ L+ ++ S + L ++ + + KG ES Y +I+ K + + A+ +
Sbjct: 869 EFTYNLLLDAMGKSMRIEEMLKVQEEMHR--KGYESTYVTYNTIISGLVKSRRLEQAIDL 926
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDAFISG 188
+ ++ +QG P + L+ L +G + A +LF M+ EY K N Y+ ++G
Sbjct: 927 YYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEML---EYGCKANCTIYNILLNG 983
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
GN + + + + G + ++++Y +I KA + ++ +++ +G+ P
Sbjct: 984 HRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPD 1043
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++GL ++L+ S + G N L+ + G+ E + E
Sbjct: 1044 LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYE 1103
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
L P V ++ +IR Y++S D + GRM
Sbjct: 1104 ELLTKGWKPNVFT--YNALIRGYSVSGSTDSAYAAYGRM 1140
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 3/236 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ S+ +++ +I+ L S ++ + ++ + M +G Y L+ K +
Sbjct: 899 GYESTYVTYNTIISGLVKS--RRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 956
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A ++F M G K + ++N L+ +G+ LF+ MV + P+ K+Y
Sbjct: 957 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVD-QGINPDIKSYTII 1015
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G ++ ++ + G ++ TY LI G K++ + + EM GI
Sbjct: 1016 IDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGI 1075
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+P++ ++ L K + LL GWK N L++ Y G D
Sbjct: 1076 VPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTD 1131
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E L Y LI GK + + A+ +F M+ +GI P+ +NSLI +G A
Sbjct: 1039 GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEA 1098
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
++E +++ + +KPN TY+A I G+S G+ D+ Y I G N T
Sbjct: 1099 GKMYEELLT-KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 53/371 (14%)
Query: 95 WRLDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W L +M G + + Y I + G+ + A + ME +G KPD LI
Sbjct: 295 WLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVL 354
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+G + A +F M S++ KP+ TY + F+ G ++ + + A A G++ N
Sbjct: 355 CDAGRISDAKDVFWKMKKSDQ-KPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDN 413
Query: 214 VQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
V Y ++I + R F++++ F +EM GI+P ++ G +
Sbjct: 414 VVAYTAVIDALCQVGRVFEALEMF-DEMKQKGIVPEQYSYNSLISGFLKADRFGDALELF 472
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
K++ G K N + Y + G + ++ E + P+V+ +G L+
Sbjct: 473 KYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVV----AGNAVLFG 528
Query: 333 L--SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGS 386
L S RL + + G+S + M+ C C+ + D +F D I+ +
Sbjct: 529 LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC----CSKASKFDEAVKIFYDMIENN 584
Query: 387 ----------------------------YKLRR-------ATYDFLVAGYRRAGLSGKLD 411
Y+L+ TY+ L+AG R G ++
Sbjct: 585 CVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVM 644
Query: 412 SVINEMKFAEY 422
++ EM + Y
Sbjct: 645 HLLEEMYHSNY 655
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D + +G + Y +I K + + F + G++PD +N LI S
Sbjct: 999 DMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSK 1058
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+ A+SLF M + PN TY++ I G K Y + G+ NV TY
Sbjct: 1059 RLEEAVSLFNEM-QKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTY 1117
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+LI G + DS Y M+ G +P+
Sbjct: 1118 NALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1148
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 2/151 (1%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H+F M QGI PD + +I +G + L+ F ++ +P+ TY+ I G
Sbjct: 995 HLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMG-LEPDLITYNLLIDG 1053
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
++ + G N+ TY SLI KA + YEE+++ G P+
Sbjct: 1054 LGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1113
Query: 249 IPILEKVLEGLCARRKLDRV-KSFLKFLLGG 278
+ ++ G D ++ + ++GG
Sbjct: 1114 VFTYNALIRGYSVSGSTDSAYAAYGRMIVGG 1144
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 9/193 (4%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS----EEYKPNSKTYDAF 185
VF M+ Q +K + F ++ G + +A +M + Y N Y
Sbjct: 191 VFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 250
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
SGF + +A+ + Y + G +V+TY L+ K RD ++V EM + G+
Sbjct: 251 KSGF----DREAL-EVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 305
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ + L R+ D L + G K + L++ C+ GR+ + ++
Sbjct: 306 KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKD 365
Query: 306 QLETLTKCNQSPE 318
+ K +Q P+
Sbjct: 366 VFWKMKKSDQKPD 378
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 9/272 (3%)
Query: 54 QIKTTLDSVDIF------AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC 107
Q+ +++++F Q+S+++LI+ + L L +D + G +
Sbjct: 426 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMD--IHGPKPN 483
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ I GK A+ + M+++GI PD N+++ SG + A +F
Sbjct: 484 GYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFH 543
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ + P++ TY I S D K + I +V SLI KA
Sbjct: 544 EL-KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKA 602
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + + ++ + + P+ +L GL K+ V L+ + + N
Sbjct: 603 GRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITY 662
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ C C+ G V++ + L ++T P++
Sbjct: 663 NTILDCLCKNGAVNDALDMLYSMTTKGCIPDL 694
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 1/182 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ + +NSLIC + + A LF M P+ TY+ + ++
Sbjct: 829 GVSLKTGSYNSLICGLVDENLIDIAEGLFAEM-KELGCGPDEFTYNLLLDAMGKSMRIEE 887
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
M K G+ TY ++I G +K+R + Y +MS G P+ +L+
Sbjct: 888 MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 947
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GL +++ ++ +L G K N + L+ + G +++ + + +P
Sbjct: 948 GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 1007
Query: 318 EV 319
++
Sbjct: 1008 DI 1009
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 3/193 (1%)
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G V +F++M + K N T+ A G G + + AG +N T
Sbjct: 183 GRVGDMAEVFDVM-QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYT 241
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y L++ +K+ Y+ MM G++PS+ ++ RR ++ V L+ +
Sbjct: 242 YNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREME 301
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G K N ++ + R DE L + P+V+ H + +I++ + R
Sbjct: 302 AHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITH--TVLIQVLCDAGR 359
Query: 337 LDDVEYSVGRMGK 349
+ D + +M K
Sbjct: 360 ISDAKDVFWKMKK 372
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F ++ ++P +N+L+ G V + L E M S Y PN TY+ +
Sbjct: 608 AWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN-YPPNLITYNTIL 666
Query: 187 SGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G V DA++ Y+ G ++ +Y ++I+G +K ++ + +M + +
Sbjct: 667 DCLCKNGAVNDALDMLYSMT-TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-L 724
Query: 246 IPSIPILEKVL 256
IP L +L
Sbjct: 725 IPDYATLCTIL 735
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K A+ +F M PD V NSLI +G A +F +
Sbjct: 557 YTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIF-YQL 615
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-----HGSL 225
+P TY+ ++G G V + + + N+ TY +++ +G++
Sbjct: 616 KEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAV 675
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
D++D Y M + G IP + V+ GL + + S
Sbjct: 676 N----DALDMLY-SMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIF 717
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 5/264 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ ++ + A+ + M+ QG+ P S N ++ + G + A ++F+ M S
Sbjct: 753 CMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEM-SV 811
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S +Y + G G + ++W I GF + T ++ + +
Sbjct: 812 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 871
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +M+ LG P++ +++GLC + + + L+ ++ GWK N L+
Sbjct: 872 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 931
Query: 293 CYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G ++ L + + P V H ++ +I Y D+L+ E RM +QG
Sbjct: 932 GLCKRGWTEKAFRLFLKLVRSDTYKPNV--HTYTSMIGGYCKEDKLNRAEMLFSRMKEQG 989
Query: 352 LSFKSAEDVEMVICSYFRCAAYDR 375
L F + +I + + ++ R
Sbjct: 990 L-FPNVNTYTTLINGHCKAGSFGR 1012
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 4/208 (1%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C + L+ +N V A+ F M G KP+ F SLI G + A +
Sbjct: 852 DNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEML 911
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSL 225
E MV + +KPN T+ A I G G + + + + + + NV TY S+I G
Sbjct: 912 EEMVRNG-WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 970
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + + + M G+ P++ ++ G C R + + G+ N
Sbjct: 971 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 1030
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKC 313
+ C+ R E E L C
Sbjct: 1031 TYNAAIDSLCKKSRAPEAYELLNKAFSC 1058
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W KM+ G + L + LI K ++ A + M G KP+ +LI
Sbjct: 874 WYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 933
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V S+ YKPN TY + I G+ ++ ++ G N
Sbjct: 934 CKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPN 993
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
V TY +LI+G KA F M G +P+I ++ LC + +
Sbjct: 994 VNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 1044
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A +F+ M+ QG+ P+ + +LI +G A L +M
Sbjct: 962 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM- 1020
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I + + G + TY LI K D
Sbjct: 1021 GDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDI 1080
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+ M G + + ++ C ++K+ + + ++ G + +
Sbjct: 1081 NQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSM 1140
Query: 291 VKCYCELGRVD 301
+ CYC+ G +D
Sbjct: 1141 ISCYCKEGDID 1151
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 1/177 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K P A + + G++ D + LI D+ AL+ F M + ++ +
Sbjct: 1041 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM-NKTGFEADM 1099
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ + I+ F + + + ++ G +TY S+I K D D +++
Sbjct: 1100 RLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHN 1159
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M G +P ++ GLC + +D + ++ G E L YC+
Sbjct: 1160 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 1216
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M ++G PD +N+L+ A G V A+ + +SS+ P TY+ I
Sbjct: 410 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN-QLSSKGCSPVLITYNTVI 468
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G + K G ++ TY SL+ G + D +F+ ++ LGI
Sbjct: 469 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 528
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
P+ ++ GLC R+ DR FL +++ K E
Sbjct: 529 PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 566
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 155/407 (38%), Gaps = 54/407 (13%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE- 110
+I L +D +++ ++ +L S K+A VL+ +L K C +
Sbjct: 198 GEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK------ECYPDV 251
Query: 111 --YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y LI + K V AM + M +G KPD +N LI G + A+
Sbjct: 252 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 311
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH----GS 224
M S +PN T++ + S G K + + G S +V T+ LI+
Sbjct: 312 M-PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 370
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
L R D E+M G P+ +L G C +K+DR +L ++ G +
Sbjct: 371 LLGRAID----ILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 426
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII---------RLYALSD 335
L+ C+ G+VD E L L+ SP VL+ + + I R L D
Sbjct: 427 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP-VLITYNTVIDGLSKVGKTERAIKLLD 485
Query: 336 RL-------DDVEYS-----VGRMGKQGLSFKSAEDVE------------MVICSYFRCA 371
+ D + YS + R GK + K D+E ++ +
Sbjct: 486 EMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSR 545
Query: 372 AYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
DR +D I K ATY L+ G GL+ + ++NE+
Sbjct: 546 QTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 80/202 (39%), Gaps = 7/202 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK + + M + +E G PD +N LI SG++ AL + + M P+
Sbjct: 163 GKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM----NVAPD 215
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ + G + + + +V TY LI + K + +
Sbjct: 216 VVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLD 275
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM + G P + ++ G+C +LD FL + G + N +++ C G
Sbjct: 276 EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTG 335
Query: 299 RVDELEEQLETLTKCNQSPEVL 320
R + E+ L + + SP V+
Sbjct: 336 RWMDAEKLLSDMLRKGCSPSVV 357
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 6/228 (2%)
Query: 34 STSVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLV 92
S SV + N LI+ L Q + + L+ + + + S++ L+ KK
Sbjct: 353 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF--CKEKKMDRA 410
Query: 93 LEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
+E+ LD M+ +G + Y L+ K V A+ + + ++G P +N++I
Sbjct: 411 IEY-LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 469
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
G A+ L + M + KP+ TY + +SG S G VD K++ G
Sbjct: 470 GLSKVGKTERAIKLLDEM-RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 528
Query: 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
N TY S++ G K+R D F M+S P+ ++EG+
Sbjct: 529 PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 576
>gi|125552311|gb|EAY98020.1| hypothetical protein OsI_19934 [Oryza sativa Indica Group]
Length = 607
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 13/286 (4%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-YKPNSKTYDAFISGFSSLGNVDAMN 199
PD A++N+L+ + + SG + F + PN+ +Y+ I+ F VD M
Sbjct: 172 PDQALYNALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHME 231
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ A+G + TY ++I G L A ++ ++ ++EM+S + P +L G
Sbjct: 232 ATLLSLDASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGY 291
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQS 316
+ +++ + +++ + ++ YC+ VD ++EE L+ L +
Sbjct: 292 AHAGMIYKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYR 351
Query: 317 P--EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD 374
P VLL IR YA ++ +E + ++ + + + +I SYF+C A D
Sbjct: 352 PWLAVLL------IRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVD 405
Query: 375 RLDLFLDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
+L F+ + +KL R+ Y + Y + ++ V++EM+F
Sbjct: 406 KLAHFIRQAEEAGWKLCRSLYHCKMVMYGKQHRLPEMHWVLDEMEF 451
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
EA+G ++ +++L+ A L + +V A+ LF MV E P++ Y ISG + G
Sbjct: 313 EARG---NAVTYSTLVGAFLHTNNVGVAMELFHEMVD-EGNSPDAIMYFTMISGLTQAGR 368
Query: 195 VDAMNKWYAANI--AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+D + W A AGF ++ + Y LI G + + + EM G+ P +
Sbjct: 369 LD--DAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTY 426
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L GLC V L ++ GG + + L+ YC++G++DE ++ +
Sbjct: 427 NTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDE 486
Query: 313 CNQSPEVLLH 322
P +++
Sbjct: 487 SGIQPNTVIY 496
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 1/186 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ NV AM +F M +G PD+ ++ ++I +G + A S+ M
Sbjct: 321 YSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSM- 379
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ ++K Y+ I GF ++ + AG +V TY +L+ G KA DF
Sbjct: 380 KKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDF 439
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+VD +M+ G PS+ ++ G C ++D + + G + N + L
Sbjct: 440 LAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTL 499
Query: 291 VKCYCE 296
+ C+
Sbjct: 500 IDFLCK 505
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 136/354 (38%), Gaps = 20/354 (5%)
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNVPFAMHVFTSM 134
AL+ + S SP + + D + G + L+ + ++P +F SM
Sbjct: 104 ALLYKILSRSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASM 163
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLG 193
++P+ + L+ +G V ALS+ + M E + P+ + + G G
Sbjct: 164 RDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTG 223
Query: 194 NVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+ K+ + + G + N TY L H +A + +M + P+
Sbjct: 224 RLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVT 283
Query: 252 LEKVLEGLCARRKLDRVKSFLKFL-----LGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
L ++ GLC + RV + L+F + + N LV + V E
Sbjct: 284 LNTIVGGLC---WVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMEL 340
Query: 307 LETLTKCNQSPEVLLHF--FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
+ SP+ +++F SG+ + + RLDD M K G A+ ++I
Sbjct: 341 FHEMVDEGNSPDAIMYFTMISGLTQ----AGRLDDAWSMATSMKKAGFQL-DAKAYNILI 395
Query: 365 CSYFRCAAYDRLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ R + L +K + TY+ L++G +AG +D ++ +M
Sbjct: 396 GGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKM 449
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 3/167 (1%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W + +K LD A I + G + + + A + M+ G++PD +N+L+
Sbjct: 373 WSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSG 432
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+GD + L M+ +P+ T+ I G+ +G +D + + + +G
Sbjct: 433 LCKAGDFLAVDELLGKMIDGG-CRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQP 491
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
N Y +LI K+RD ++EM + ++ +L+GL
Sbjct: 492 NTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGL 538
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 91 LVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
L ++ L KM+ G + + LI KV + A+ +F SM+ GI+P++ ++N+L
Sbjct: 440 LAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTL 499
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGF 189
I S D A+ LF+ M E++ P N T++A + G
Sbjct: 500 IDFLCKSRDTSLAIELFDEM--REKHVPANVTTFNALLKGL 538
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+++G+ D +N LI LC + + L + PN TY+ I
Sbjct: 287 AIELLDHMKSKGVDADVCTYNMLIHD-LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 345
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GFS+ G V ++ ++ G S N T+ +LI G + +F + + M + G+
Sbjct: 346 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 405
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L+GLC + D + F + G + ++ C+ G +DE
Sbjct: 406 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 465
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L ++K P+++ +S +I + R + V R+ + GLS
Sbjct: 466 LNEMSKDGIDPDIVT--YSALINGFCKVGRFKTAKEIVCRIYRVGLS 510
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD + ++ +++ LI L +S+ K L+L +M+ NE Y LI
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---TYNTLING 347
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V A + M + G+ P+ FN+LI + G+ AL +F M+ ++ P
Sbjct: 348 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTP 406
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y + G D +Y G V TY +I G K D
Sbjct: 407 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLL 466
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM GI P I ++ G C + K + + G N + L+ C +
Sbjct: 467 NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRM 526
Query: 298 GRVDE 302
G + E
Sbjct: 527 GCLKE 531
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV A + + G+ P+ ++++LI C G + A+ ++E M+
Sbjct: 481 YSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 540
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + T++ ++ G V ++ + G N +++ LI+G + +
Sbjct: 541 L-EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 599
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM +G P+ +L+GLC L + FLK L ++ M L
Sbjct: 600 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 659
Query: 291 VKCYCELGRV 300
+ C+ G +
Sbjct: 660 LTAMCKSGNL 669
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 37/288 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL------- 163
Y L+ K N+ A+ +F M + I PDS + SLI G V A+
Sbjct: 656 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 715
Query: 164 -------------SLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNV 195
+ M + ++K P+ T +A I G+S +G +
Sbjct: 716 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 775
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ N N+ TY L+HG K +D + Y ++ GI+P +
Sbjct: 776 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 835
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G+C L+ LK + G +++ L+ C G ++ + ++ +T
Sbjct: 836 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 895
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
S + ++ + + R + + M KQG+S +S + + ++
Sbjct: 896 SLDK--DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLI 941
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV M TS GI P++ F+ LI SG+ + A S+F+ M + P
Sbjct: 561 AGKVAEAEEFMRCMTS---DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH-P 616
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + + G G++ K+ + A +V+ Y +L+ K+ + +
Sbjct: 617 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 676
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRK 264
EM+ I+P ++ GLC + K
Sbjct: 677 GEMVQRSILPDSYTYTSLISGLCRKGK 703
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P A F +L+ C +G+V+ AL L +++S+ K + +Y+ I+G + G++ +
Sbjct: 1002 PTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFE 1060
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMMSLGIIPSIPI 251
Y GF N TY++LI G L AR+ F D +++++ G I S+ +
Sbjct: 1061 LYEEMKGDGFLANATTYKALIRGLL-ARETAFSGADIILKDLLARGFITSMSL 1112
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 7/255 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + +++ALI S K L + + ++ KG Y L L G +N
Sbjct: 367 FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEA--KGLTPSEVSYGVL--LDGLCKNA 422
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
F A + M+ G+ + +I +G + A+ L M S + P+ TY
Sbjct: 423 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTY 481
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I+GF +G + G S N Y +LI+ + R YE M+
Sbjct: 482 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 541
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G ++ LC K+ + F++ + G N L+ Y G +
Sbjct: 542 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 601
Query: 303 LEEQLETLTKCNQSP 317
+ +TK P
Sbjct: 602 AFSVFDEMTKVGHHP 616
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G +Q+ ++ +F M G P N+++ + + SG+ V+ S + M+ + P+
Sbjct: 177 GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLK-RKICPD 232
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I+ + G+ + + +G++ + TY +++H K F + +
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 292
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G+ + ++ LC ++ + L+ + NE L+ + G
Sbjct: 293 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 352
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + L + SP
Sbjct: 353 KVLIASQLLNEMLSFGLSP 371
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 8/312 (2%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI + K + A M A G+ P+ + S+I G V AL +F+
Sbjct: 423 LQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFK 482
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M E PN+ TY + I G + G + V TY +LI G K
Sbjct: 483 LM-EHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK 541
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+FD+ R +E M G+ P + + LC K R + FL+ G + +
Sbjct: 542 HEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALC---KSGRAEEAYSFLVRKGVVLTKVTY 598
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV + + G D +E + N+ + L+ +S +++ +L++ + +M
Sbjct: 599 TSLVDGFSKAGNTDFAAVLIEKMV--NEGCKADLYTYSVLLQALCKQKKLNEALSILDQM 656
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
G+ ++I + +D LF + I +K TY ++ Y + G
Sbjct: 657 TVSGVKCNIVA-YTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGR 715
Query: 407 SGKLDSVINEMK 418
+ + +I EM+
Sbjct: 716 IEEAEHLIGEME 727
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 6/218 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K A +F ME G+ PD +N L A SG A S +
Sbjct: 531 YTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSF----L 586
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + + GFS GN D + G ++ TY L+ K +
Sbjct: 587 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKL 646
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++M G+ +I ++ + K D KS ++ G K +
Sbjct: 647 NEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVF 706
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSG 326
+ YC++GR++E E + + + +P+V+ + F +G
Sbjct: 707 ISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFING 744
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 20/195 (10%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G++ Y I+ K+ + A H+ ME G+ PD +N I C G + A
Sbjct: 695 GHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRA 754
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
S + MV + +PN TY + F + ++A V+ + I
Sbjct: 755 FSTLKRMVDAS-CEPNCWTYWLLLKHFLKMSLINA------------HYVDTSGMWNWI- 800
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+ + V + E MM G+ P++ ++ G C +L+ L +LG
Sbjct: 801 ------ELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISP 854
Query: 283 NENMAQKLVKCYCEL 297
NE + L+KC C++
Sbjct: 855 NEEIYTMLIKCCCDI 869
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 4/235 (1%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
N +++++LI L +A+ +L + +G + + LI K + + A
Sbjct: 351 NPDDWTYNSLIYGLCGGKLDEAEELLN---GAIARGFTPTVITFTNLINGYCKAERIDDA 407
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ V ++M + K D + LI + + A M ++ PN TY + I
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG-LAPNVVTYTSIID 466
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+ +G V A + + G N TY SLI+G ++ + +M GI P
Sbjct: 467 GYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITP 526
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ +++G C + + D + + G +E L C+ GR +E
Sbjct: 527 GVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEE 581
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 4/229 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ A F + G++ D+ N+L+ + D+ A L +M+
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLL-MMM 240
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ N +Y I G V + G S+N+ TY LI G K
Sbjct: 241 PLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRI 300
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM G++PS+ +++G C ++ + G ++ L
Sbjct: 301 HDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSL 360
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ C G++DE EE L +P V+ F+ +I Y ++R+DD
Sbjct: 361 IYGLCG-GKLDEAEELLNGAIARGFTPTVIT--FTNLINGYCKAERIDD 406
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 17/301 (5%)
Query: 20 PLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIF----AFNSSQFSWD 75
P R + L+ N + S NP + +L + S++ +++ ++ AF + Q + +
Sbjct: 98 PRRVNSLVFNALSQLRG-SKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQ-ACN 155
Query: 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTS 133
AL+ L KK+ + W L + + Y L+ + +V A + +
Sbjct: 156 ALLNGLL----KKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISE 211
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +GI+P ++ +LI ++ A S+F M S + PN TY+ + G+
Sbjct: 212 MVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVF-PNLYTYNVLMDGYCKTA 270
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
NV Y + G NV T+ LI K R+ + RF+ +M G++P++ +
Sbjct: 271 NVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFN 330
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVDELEEQLETLT 311
+++G L L +KI+ ++ L+K C LG V+E ++ L+ +
Sbjct: 331 SLIDGYSKAGNCSEATDLL--LEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRME 388
Query: 312 K 312
K
Sbjct: 389 K 389
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 5/247 (2%)
Query: 112 ACLIALSGKVQNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC L+G ++ F + ++ +M ++ + P +N L+ AC GDV+ A SL M
Sbjct: 153 ACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEM 212
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + +P Y I G S + + +G N+ TY L+ G K +
Sbjct: 213 VK-KGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTAN 271
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
Y+ M+ G+ P++ +++ LC R+L + F + G N +
Sbjct: 272 VKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNS 331
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ Y + G E + L + K SP+V +S +I+ +++ + + RM K
Sbjct: 332 LIDGYSKAGNCSEATDLLLEMEKFKISPDVFT--YSILIKNACRLGTVEEADDILKRMEK 389
Query: 350 QGLSFKS 356
+G+ S
Sbjct: 390 EGVPANS 396
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 43/207 (20%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
++++ K+A + + LD L+ N + + LI KV+ + A F M G+ P
Sbjct: 268 KTANVKQALHLYQGMLDDGLQPN---VVTFGILIDALCKVRELLAARRFFVQMAKFGVVP 324
Query: 142 DSAVFNSLICA------CLCSGDVVTALSLFEI--------------------------- 168
+ VFNSLI C + D++ + F+I
Sbjct: 325 NVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDIL 384
Query: 169 -MVSSEEYKPNSKTYDAFISGFSSLGNVDAM------NKWYAANIAAGFSVNVQTYESLI 221
+ E NS Y++ I G+ GN++ K+++ G + Y ++
Sbjct: 385 KRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVML 444
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPS 248
G L A+ V + +M+ +GI+P+
Sbjct: 445 QGHLNAKHMADVMMLHADMIKMGIVPN 471
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
K N + I FS +G VD + Y + G VQ +L++G LK FD +
Sbjct: 116 KFNPSVFGVLIIAFSEVGLVDEALRVY---LKVGAFPAVQACNALLNGLLKKSSFDIMWE 172
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
Y M+S + P++ +++ C + + R KS + ++ G + + L+ C
Sbjct: 173 LYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLC 232
Query: 296 ELGRVDELEEQLETLTKCNQSPEV 319
++ E E + P +
Sbjct: 233 SESKLMEAESMFRQMKDSGVFPNL 256
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 10/260 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ + + N + ++++ L+ +L + K+A+ VL L +K + + Y+ L+
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPD---VITYSTLMDG 313
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYK 176
V + A HVF +M G+ PD + LI C +V AL+LF+ M +
Sbjct: 314 YFLVYELKKAQHVFNAMSLMGVTPDVHSYTILING-FCKNKMVDEALNLFKEM-HQKNMV 371
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P TY + I G G + + G NV TY SLI G K D
Sbjct: 372 PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIAL 431
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ +M GI P +L+GLC +L + + LL G+ ++ ++ +C+
Sbjct: 432 FNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCK 491
Query: 297 LGRVDELEEQLETLTKCNQS 316
G LEE L L+K ++
Sbjct: 492 QGL---LEEALTMLSKMEEN 508
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L G+V A+H + AQGIK D + +LI GD A+ L +
Sbjct: 139 LCLKGQVNK---ALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVR-KIDGRL 194
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
KPN + Y+ I V ++ A G S +V TY +LI+G A
Sbjct: 195 TKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAI 254
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
EM+ I P++ +++ LC K+ K+ L +L K + L+ Y
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ + + + ++ +P+V H ++ +I + + +D+
Sbjct: 315 FLVYELKKAQHVFNAMSLMGVTPDV--HSYTILINGFCKNKMVDE 357
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/393 (20%), Positives = 152/393 (38%), Gaps = 51/393 (12%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQL--VLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122
F NSS + + S+Q+ +Q +L R + LD +A K++
Sbjct: 21 FLQNSSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFA-------KIK 73
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
+ A+ + +E +GI+PD N LI C C G + S+ ++ Y+P++ T
Sbjct: 74 HYSTAVSLSHRLELKGIQPDLITLNILI-NCFCHMGQITFGFSVLAKIL-KRGYQPHTIT 131
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD------------ 229
+ I G G V+ ++ +A G + +Y +LI+G K D
Sbjct: 132 FTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKID 191
Query: 230 --------------FDSVDRF---------YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D++ ++ + EM + GI + ++ G C KL
Sbjct: 192 GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLK 251
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
L ++ N LV C+ G+V E + L + K P+V+ +S
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVIT--YST 309
Query: 327 IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKG 385
++ Y L L ++ M G++ ++I + + D L+LF + +
Sbjct: 310 LMDGYFLVYELKKAQHVFNAMSLMGVT-PDVHSYTILINGFCKNKMVDEALNLFKEMHQK 368
Query: 386 SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ TY L+ G ++G + +I+EM+
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMR 401
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M + I P+ +N L+ A G V A ++ +M+ + KP+ TY +
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC-VKPDVITYSTLM 311
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ + + + A G + +V +Y LI+G K + D ++EM ++
Sbjct: 312 DGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMV 371
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +++GLC ++ V + + G N L+ C+ G +D
Sbjct: 372 PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDR 427
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+++G+ D +N LI LC + + L + PN TY+ I
Sbjct: 247 AIELLDHMKSKGVDADVCTYNMLIHD-LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GFS+ G V ++ ++ G S N T+ +LI G + +F + + M + G+
Sbjct: 306 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L+GLC + D + F + G + ++ C+ G +DE
Sbjct: 366 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L ++K P+++ +S +I + R + V R+ + GLS
Sbjct: 426 LNEMSKDGIDPDIVT--YSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD + ++ +++ LI L +S+ K L+L +M+ NE Y LI
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---TYNTLING 307
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V A + M + G+ P+ FN+LI + G+ AL +F M+ ++ P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTP 366
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y + G D +Y G V TY +I G K D
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLL 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM GI P I ++ G C + K + + G N + L+ C +
Sbjct: 427 NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRM 486
Query: 298 GRVDE 302
G + E
Sbjct: 487 GCLKE 491
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV A + + G+ P+ ++++LI C G + A+ ++E M+
Sbjct: 441 YSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 500
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + T++ ++ G V ++ + G N +++ LI+G + +
Sbjct: 501 L-EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM +G P+ +L+GLC L + FLK L ++ M L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619
Query: 291 VKCYCELGRV 300
+ C+ G +
Sbjct: 620 LTAMCKSGNL 629
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 37/288 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL------- 163
Y L+ K N+ A+ +F M + I PDS + SLI G V A+
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 164 -------------SLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNV 195
+ M + ++K P+ T +A I G+S +G +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ N N+ TY L+HG K +D + Y ++ GI+P +
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G+C L+ LK + G +++ L+ C G ++ + ++ +T
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
S + ++ + + R + + M KQG+S +S + + ++
Sbjct: 856 SLDK--DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLI 901
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV M TS GI P++ F+ LI SG+ + A S+F+ M + P
Sbjct: 521 AGKVAEAEEFMRCMTS---DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH-P 576
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + + G G++ K+ + A +V+ Y +L+ K+ + +
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRK 264
EM+ I+P ++ GLC + K
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGK 663
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P A F +L+ C +G+V+ AL L +++S+ K + +Y+ I+G + G++ +
Sbjct: 962 PTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFE 1020
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMMSLGIIPSIPI 251
Y GF N TY++LI G L AR+ F D +++++ G I S+ +
Sbjct: 1021 LYEEMKGDGFLANATTYKALIRGLL-ARETAFSGADIILKDLLARGFITSMSL 1072
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 7/255 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + +++ALI S K L + + ++ KG Y L L G +N
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEA--KGLTPSEVSYGVL--LDGLCKNA 382
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
F A + M+ G+ + +I +G + A+ L M S + P+ TY
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTY 441
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I+GF +G + G S N Y +LI+ + R YE M+
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G ++ LC K+ + F++ + G N L+ Y G +
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 303 LEEQLETLTKCNQSP 317
+ +TK P
Sbjct: 562 AFSVFDEMTKVGHHP 576
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G +Q+ ++ +F M G P N+++ + + SG+ V+ S + M+ + P+
Sbjct: 137 GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLK-RKICPD 192
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I+ + G+ + + +G++ + TY +++H K F + +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G+ + ++ LC ++ + L+ + NE L+ + G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + L + SP
Sbjct: 313 KVLIASQLLNEMLSFGLSP 331
>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
Length = 618
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 109 DEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE+ C I + G + A M+ GI ++A +N LI SG++ AL
Sbjct: 347 DEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTC 406
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M S +PN TY + I G S G ++ Y +A G NV TY +LIHG K
Sbjct: 407 TRM-SEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAK 465
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
D D+ +EM GI + + +++GLC + +RV+ ++F++
Sbjct: 466 NGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLC---RENRVQDAVRFIM 512
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 9/270 (3%)
Query: 87 KKAQLVLEWRL-DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K L W L D+ML +G + Y LI +V A V+ M A+ I P+
Sbjct: 150 KAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVV 209
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+ ++I A LC D + + + +PN TY+A +S N+ +Y
Sbjct: 210 TYTTMIYA-LCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYD 268
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G N + +LI G KA + +M + P++P+ ++ G
Sbjct: 269 LLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGY 328
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH-- 322
+F + ++ + +E +V+ C+ G++ LE + Q + L+
Sbjct: 329 AQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVM----QQSGIALNAA 384
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ +I Y S LD+ + RM + G+
Sbjct: 385 AYNVLIDEYCKSGNLDEALVTCTRMSEVGV 414
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 96/267 (35%), Gaps = 40/267 (14%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHV 130
++++AL++S K LV + L K L N+ + LI K + A ++
Sbjct: 244 YTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVI---FTTLIDGLCKANRITEAKNI 300
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP------------- 177
F M + P V+NSLI SG AL+ F+ ++ +E +P
Sbjct: 301 FLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIR-KELRPDEFTCSIVVRGLC 359
Query: 178 ----------------------NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
N+ Y+ I + GN+D G NV
Sbjct: 360 DGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVV 419
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G K + + Y EM++ G+ P++ ++ G +D K +
Sbjct: 420 TYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEM 479
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
G N LV C RV +
Sbjct: 480 EEKGIYSNAITVSVLVDGLCRENRVQD 506
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
A N++ +++ LI S LV R+ ++ G E + Y+ LI K +
Sbjct: 379 IALNAA--AYNVLIDEYCKSGNLDEALVTCTRMSEV--GVEPNVVTYSSLIDGHSKNGEM 434
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM ++T M A+G++P+ + +LI +GD+ A L + M Y N+ T
Sbjct: 435 EIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYS-NAITVSV 493
Query: 185 FISGFSSLGNV-DAM--------NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+ G V DA+ K N + SV TY +LI+G ++
Sbjct: 494 LVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSV---TYMTLIYGLYIDGQYNEACH 550
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLC 260
F+ M G++P V+ GLC
Sbjct: 551 FFSCMRDSGMVPDRFTYTLVIRGLC 575
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 9/245 (3%)
Query: 80 SLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIA---LSGKVQNVPFAMHVFTSM 134
SL KK Q+ +RL +KML G+ + Y LI + G+ ++ +F +
Sbjct: 197 SLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKIFKEL 253
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
+G KPD + N+ + +G+V +FE + S + P+ ++Y I G + G
Sbjct: 254 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSILIHGLTKAGQ 312
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
+ + A GF+++ + Y +++ G K+ EEM + P++
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 372
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
+++GL +LD + G ++N + L+ + ++GR+DE LE + K
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432
Query: 315 QSPEV 319
+P V
Sbjct: 433 LTPNV 437
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K ++F +M+ QG D+ +N+++ SG V A + E M
Sbjct: 300 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM- 358
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P TY A + G + + +D + + G +NV Y SLI G K
Sbjct: 359 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 418
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D EEMM G+ P++ +L+ L +++
Sbjct: 419 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 454
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y+ LI GKV + A + M +G+ P+ +NSL+ A + + ++
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINE 455
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL F+ M + PN+ TY I+G + + ++ G NV TY ++I
Sbjct: 456 ALVCFQSM-KEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 514
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
G K + +E + G IP ++EG+
Sbjct: 515 SGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 552
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 2/215 (0%)
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
C Y +I G A + + +G P FNS++ V ALSLF
Sbjct: 52 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF 111
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+M E PNS TY+ I G V+ + A N+ T ++ K
Sbjct: 112 EVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 169
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
AR + + +E G P +++GL + ++D + +L G N +
Sbjct: 170 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 229
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L++ + GR ++ + + L + P++ L
Sbjct: 230 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTL 264
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 37/194 (19%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F ++AQG+KPD + S+I +G + A LF M +E P + Y+ I
Sbjct: 2 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM-EAERSVPCAYAYNTMI 60
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ S G F+ + E + G I
Sbjct: 61 MGYGSAGR-----------------------------------FEDAYKLLERLRERGCI 85
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS+ +L L +RK+D S + ++ + N + ++ C GRV+E
Sbjct: 86 PSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRI 144
Query: 307 LETLTKCNQSPEVL 320
L+ + + P +L
Sbjct: 145 LDEMEHASLFPNLL 158
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 92/209 (44%), Gaps = 6/209 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++A++ +S KA +LE +K + + + Y ++ K+ + A +F
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCV---QPTVATYGAIVDGLAKIDRLDEAYMLF 390
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+++GI+ + +++SLI G + A + E M+ + PN T+++ +
Sbjct: 391 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLTPNVYTWNSLLDALVK 449
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ + + N TY LI+G + + ++ F+++M G++P++
Sbjct: 450 AEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVT 509
Query: 252 LEKVLEGLCARRKL-DRVKSFLKFLLGGG 279
++ GL + D F +F GG
Sbjct: 510 YTTMISGLAKVGNITDAYSLFERFKANGG 538
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 2/208 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M+ +G+KP+ F +LI + + AL L E MV KPN+ Y I GF
Sbjct: 109 VFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGF 168
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G ++ K + + + Y +LI K + V EM G P
Sbjct: 169 CGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDT 228
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ G C L+ + ++ G K + ++ C+ G++D+ + LE
Sbjct: 229 VTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLED 288
Query: 310 LTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ + P+VL + F G+ + L +
Sbjct: 289 MPRRGCPPDVLSYRIIFDGLCEMMQLKE 316
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 6/245 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDK--MLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
++ LI L +S K L L+ + K M+K N S Y LI V + FA +
Sbjct: 124 TFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI---YTTLIKGFCGVGELNFAFKL 180
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M +K SAV+++LI A G + M KP++ TY+A I+G
Sbjct: 181 KEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREM-GENGCKPDTVTYNAIINGHC 239
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
++++ ++ + G +V ++ ++I K D E+M G P +
Sbjct: 240 KENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVL 299
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +GLC +L S L ++ G+ KLV C+ ++ L L +L
Sbjct: 300 SYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSL 359
Query: 311 TKCNQ 315
+ N+
Sbjct: 360 GRGNR 364
>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
Group]
gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
Length = 618
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 109 DEYACLIALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
DE+ C I + G + A M+ GI ++A +N LI SG++ AL
Sbjct: 347 DEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTC 406
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
M S +PN TY + I G S G ++ Y +A G NV TY +LIHG K
Sbjct: 407 TRM-SEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAK 465
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
D D+ +EM GI + + +++GLC + +RV+ ++F++
Sbjct: 466 NGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLC---RENRVQDAVRFIM 512
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 9/270 (3%)
Query: 87 KKAQLVLEWRL-DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K L W L D+ML +G + Y LI +V A V+ M A+ I P+
Sbjct: 150 KAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVV 209
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+ ++ICA LC D + + + +PN TY+A +S N+ +Y
Sbjct: 210 TYTTMICA-LCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYD 268
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ G N + +LI G +A + +M + P++P+ ++ G
Sbjct: 269 LLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGY 328
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH-- 322
+F + ++ G + +E +V+ C+ G++ LE + Q + L+
Sbjct: 329 AQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVM----QQSGIALNAA 384
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
++ +I Y S LD+ + RM + G+
Sbjct: 385 AYNVLIDEYCKSGNLDEALVTCTRMSEVGV 414
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F + +G++PD S++ LC G + + F ++ N+ Y+ I
Sbjct: 332 ALAFFQEIIRKGLRPDEFTC-SIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLI 390
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ GN+D G NV TY SLI G K + + Y EM++ G+
Sbjct: 391 DEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVE 450
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P++ ++ G +D K + G N LV C RV +
Sbjct: 451 PNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQD 506
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
A N++ +++ LI S LV R+ ++ G E + Y+ LI K +
Sbjct: 379 IALNAA--AYNVLIDEYCKSGNLDEALVTCTRMSEV--GVEPNVVTYSSLIDGHSKNGEM 434
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM ++T M A+G++P+ + +LI +GD+ A L + M Y N+ T
Sbjct: 435 EIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYS-NAITVSV 493
Query: 185 FISGFSSLGNV-DAM--------NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+ G V DA+ K N + SV TY +LI+G ++
Sbjct: 494 LVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSV---TYMTLIYGLYIDGQYNEACH 550
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLC 260
F+ M G++P V+ GLC
Sbjct: 551 FFSCMRDSGMVPDRFTYTLVIRGLC 575
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 9/238 (3%)
Query: 87 KKAQLVLEWRL-DKML-KGNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKP 141
KK Q+ +RL +KML G+ + Y LI + G+ ++ +F + +G KP
Sbjct: 470 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKIFKELIRRGCKP 526
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D + N+ + +G+V +FE + S + P+ ++Y I G + G +
Sbjct: 527 DLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSILIHGLTKAGQARETSNI 585
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ A GF+++ + Y +++ G K+ EEM + P++ +++GL
Sbjct: 586 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+LD + G ++N + L+ + ++GR+DE LE + K +P V
Sbjct: 646 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 703
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K ++F +M+ QG D+ +N+++ SG V A + E M
Sbjct: 566 YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM- 624
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P TY A + G + + +D + + G +NV Y SLI G K
Sbjct: 625 KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRI 684
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
D EEMM G+ P++ +L+ L +++
Sbjct: 685 DEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEIN 720
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 43/248 (17%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE----YACLIALSGKVQNVPFAMHVFT 132
L T+L + ++ Q+ L +KG SCL+ Y I GK NV A F
Sbjct: 216 LFTTLVRALAREGQVADALALVDEVKG--SCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 273
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++AQG+KPD + S+I +G + A LF M +E P + Y+ I G+ S
Sbjct: 274 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM-EAERSVPCAYAYNTMIMGYGSA 332
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G F+ + E + G IPS+
Sbjct: 333 GR-----------------------------------FEDAYKLLERLRERGCIPSVVSF 357
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L L +RK+D S + ++ + N + ++ C GRV+E L+ +
Sbjct: 358 NSILTCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 416
Query: 313 CNQSPEVL 320
+ P +L
Sbjct: 417 ASLFPNLL 424
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 125/321 (38%), Gaps = 22/321 (6%)
Query: 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
C Y +I G A + + +G P FNS++ V ALSLF
Sbjct: 318 CAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF 377
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
E+M E PNS TY+ I G V+ + A N+ T ++ K
Sbjct: 378 EVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 435
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
AR + + +E G P +++GL + ++D + +L G N +
Sbjct: 436 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 495
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV----EY 342
L++ + GR ++ + + L + P++ L L+ +D V E
Sbjct: 496 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTL-----------LNTYMDCVFKAGEV 544
Query: 343 SVGRMGKQGL-SFKSAEDVE---MVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFL 397
GRM + + S+ DV ++I + A + ++F + + L Y+ +
Sbjct: 545 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 604
Query: 398 VAGYRRAGLSGKLDSVINEMK 418
V G+ ++G K ++ EMK
Sbjct: 605 VDGFCKSGKVHKAYEILEEMK 625
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 92/209 (44%), Gaps = 6/209 (2%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++A++ +S KA +LE +K + + + Y ++ K+ + A +F
Sbjct: 600 AYNAVVDGFCKSGKVHKAYEILEEMKEKCV---QPTVATYGAIVDGLAKIDRLDEAYMLF 656
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+++GI+ + +++SLI G + A + E M+ + PN T+++ +
Sbjct: 657 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMK-KGLTPNVYTWNSLLDALVK 715
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
++ + + N TY LI+G + + ++ F+++M G++P++
Sbjct: 716 AEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVT 775
Query: 252 LEKVLEGLCARRKL-DRVKSFLKFLLGGG 279
++ GL + D F +F GG
Sbjct: 776 YTTMISGLAKVGNITDAYSLFERFKANGG 804
>gi|194699862|gb|ACF84015.1| unknown [Zea mays]
gi|414886155|tpg|DAA62169.1| TPA: rf1 protein [Zea mays]
Length = 456
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 10/224 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + ++ A H+F M +GI P F +L+ A +G + A + E+MV
Sbjct: 148 YNILMRAAAASGSLAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLEGAFEVKEVMV 207
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD---AMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
PN Y + I G G+VD A+ + A A ++ Y +L+ +
Sbjct: 208 RQYHVLPNVYVYTSLIKGLCEKGDVDAAVALKEEMAGK--ADLVLDSAVYATLVRALFQV 265
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF--LKFLLGGGWKINEN 285
+V EEM G++ + +L G C K D +F L + G K +
Sbjct: 266 GRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEK-DLAAAFAVLDDMQKNGCKADAV 324
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGI 327
LV C+LGR + E +E + + P+V+ + F G+
Sbjct: 325 SYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGM 368
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 16/181 (8%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF--------SSLG 193
DSAV+ +L+ A G + L E M S ++ Y+A ++GF ++
Sbjct: 251 DSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVA-DTVVYNAMLAGFCEDEKDLAAAFA 309
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D M K G + +Y +L+ G K + E+M G P +
Sbjct: 310 VLDDMQK-------NGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYR 362
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+ +G+CA + L ++ G+ + + AQK V+ + G V LE L L K
Sbjct: 363 MLFDGMCAAEEFLEANQVLDEMVFKGFAPSNDGAQKFVQGIEKEGDVVLLESVLCRLAKV 422
Query: 314 N 314
N
Sbjct: 423 N 423
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 145/347 (41%), Gaps = 10/347 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ LI SL + KKA V++ + + L+ N + Y LI K +V A+ V
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN---VVTYNVLINCMCKEGSVKEAIGVLK 279
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-YKPNSKTYDAFISGFSS 191
M +G+ PD +N+LI ++ A+ L E MV + KPN T+++ I G
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G + + A G VN+ TY LI G L+ +EM SLG+ P
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFT 399
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C ++DR + L + G + L+ CE G +E
Sbjct: 400 YSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGM---MERARNLFN 456
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
+ + + + + +S +I + L + + + +GL+ A +VI + +
Sbjct: 457 EMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLT-PDAVTYSIVINMFAKSG 515
Query: 372 AYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + L + S L A +D L+ GY G K+ +I EM
Sbjct: 516 DMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 7/200 (3%)
Query: 140 KPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+P++ + L+ A LC+ + A+ L M S+ + + TY I G VD
Sbjct: 112 RPNAVSYTVLMRA-LCADRLADQAVGLLRSMRSAG-VRADVVTYGTLIRGLCDAAEVDKA 169
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ +G NV Y SL+ G K+ ++ V + + EM GI P + + +++
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC K + + ++ G + N L+ C C+ G V E L+ +++ +P+
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Query: 319 VLLHFFSGIIRLYALSDRLD 338
V+ ++ +I+ LSD L+
Sbjct: 290 VV--TYNTLIK--GLSDVLE 305
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M +GI+PD ++ LI + G A + ++MV +PN TY+ I+
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMV-RRGLEPNVVTYNVLINCM 265
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P 247
G+V G + +V TY +LI G + D EEM+ I P
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325
Query: 248 SIPILEKVLEGLC---ARRKLDRVKSFLK------------FLLGGGWKIN------ENM 286
++ V++GLC R+ +V++ ++ L+GG +++ E M
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385
Query: 287 AQK--------------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ L+K +C++ +VD E+ L T+ PE L H+
Sbjct: 386 DEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPE-LFHYI 436
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLD 98
N LI LL+V V + +D + F++ LI + +A+ +L D
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+ G E L Y L+ + + A ++F M+ D ++++I +GD
Sbjct: 426 R---GIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGD 481
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ TA L + +V E P++ TY I+ F+ G+++A N A+GF +V ++
Sbjct: 482 LKTAKELLKSIVD-EGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFD 540
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGI 245
SLI G + + V EM++ I
Sbjct: 541 SLIQGYSTKGEINKVLELIREMITKNI 567
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 82/192 (42%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K N+ A V+ M +GIKPD + + L GD A L E MV
Sbjct: 447 YTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMV 506
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+++ + P+ Y+ I G +GN+ ++ G + TY ++I G L+ F
Sbjct: 507 ATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQF 566
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ + PS+ ++ G +L++ + + G + N L
Sbjct: 567 KMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNAL 626
Query: 291 VKCYCELGRVDE 302
+ C+ G +DE
Sbjct: 627 LYGMCKAGNIDE 638
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ +M GI P FN+++ +C +GD+ ++ + + + + TY+ I+GF
Sbjct: 225 VYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIW-LEMKRRNIEFSEVTYNILINGF 283
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ +++ +GF+V ++ LI G K FD +EM++ GI P+
Sbjct: 284 SKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTT 343
Query: 250 PILEKVLEGLCARRKLDRVKSFL 272
+ LC ++D + L
Sbjct: 344 STYNIYICALCDFGRIDDARELL 366
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 4/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F + A I P +N+LI SG++ A L E M + + P+ TY + GF
Sbjct: 396 LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF-PDVITYTTLVKGF 454
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPS 248
GN+ + Y + G + Y + G L+ D D R +EEM++ P
Sbjct: 455 VKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPD 514
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++GLC L + F + + G + +++ Y E G+ +
Sbjct: 515 LTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYD 574
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + P V+ +F +I +A + RL+ M K+G+
Sbjct: 575 EMLRKRLYPSVITYFV--LIYGHAKAGRLEQAFQYSTEMKKRGV 616
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 16/181 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A M G FN LI G A + + M+
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ Y P + TY+ +I G +D + ++ A +V +Y +L+HG +K F
Sbjct: 336 NAGIY-PTTSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKF 390
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++++ + I PSI +++GLC L+ G ++ E M +L
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLE-----------GAQRLKEEMTTQL 439
Query: 291 V 291
+
Sbjct: 440 I 440
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 115/274 (41%), Gaps = 8/274 (2%)
Query: 53 SQIKTTLDSVDIFAF---NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCL 108
+IK D D A N FS++ + L + K + + D ML G +
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIM---LNGYATKGCLVDMTDLFDLMLGDGIAPVI 394
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
+ LI + AM +F M G+KP+ + ++I A G + A+ F
Sbjct: 395 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQ 454
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ + P+ Y I GF + G++ + + + G +++ + S+I+ K
Sbjct: 455 MID-QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLG 513
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
++ +++G+ P+ + +++G C K+++ ++ G + N+ +
Sbjct: 514 RVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYG 573
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
LV YC++GR+DE + + P +L+
Sbjct: 574 TLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 16/245 (6%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+D Y CL+ GK++ A+ VF +M + GI+P+ V+ +L+ G + LSLF
Sbjct: 541 MDGY-CLV---GKMEK---ALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFR 593
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ + KP++ Y+ I G G + +G ++N TY ++ G K
Sbjct: 594 EMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKN 652
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
R FD ++E+ ++ + I L ++ G+ R+++ K + G
Sbjct: 653 RCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTY 712
Query: 288 QKLVKCYCELGRVDELEEQLETLTK--CNQSPEVLLHFF------SGIIRLYALSDRLDD 339
++ + G V+E E+ ++ C +L H + I+R A ++D+
Sbjct: 713 SIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDE 772
Query: 340 VEYSV 344
+S+
Sbjct: 773 RNFSL 777
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 3/202 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M Q I PD FN L+ + G + A +F+ M + P+ +Y+ +
Sbjct: 308 AVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIML 366
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+++ G + M + + G + + T+ LI D + EM G+
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ V+ LC K+D ++ G ++ L++ +C G + + +E
Sbjct: 427 PNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486
Query: 307 LETLTKCNQSPEVLLHFFSGII 328
+ + +++L FS II
Sbjct: 487 ISEIMNNGMHLDIVL--FSSII 506
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 13/237 (5%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA ++ D +K N + Y +IA ++ + AM F M QG+ PD ++
Sbjct: 412 KAMIIFNEMRDHGVKPN---VLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 468
Query: 148 SLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
LI G ++ A L EIM + + + + I+ LG V + +
Sbjct: 469 CLIQGFCTHGSLLKAKELISEIMNNGMHL--DIVLFSSIINNLCKLGRVMDAQNIFDLTV 526
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G Y L+ G + R ++ M+S GI P+ + ++ G C ++D
Sbjct: 527 NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRID 586
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-------DELEEQLETLTKCNQS 316
S + +L G K + + ++ E GR E+ E + KC S
Sbjct: 587 EGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 643
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 117/313 (37%), Gaps = 10/313 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ + A+ F + G++ D + N L+ + AL +
Sbjct: 114 YAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRT 173
Query: 171 SSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
P+ +Y + G D + + A A S +V Y ++I G K
Sbjct: 174 PELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG-GAVCSPDVVAYNTVIDGFFKE 232
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D + ++EM+ GI P V+ LC R +D+ ++FL+ ++ G N
Sbjct: 233 GDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTY 292
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ Y G+ E + + + + P+V+ + G + Y DV ++
Sbjct: 293 NNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAM 352
Query: 347 MGKQGLSFKSAEDVEMVICSY-FRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G+ F +++ Y + D DLF + T++ L+ Y G
Sbjct: 353 KGQNPDVFS----YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCG 408
Query: 406 LSGKLDSVINEMK 418
+ K + NEM+
Sbjct: 409 MLDKAMIIFNEMR 421
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L K+ V A+ V ME GIK + ++ LI L D A ++FE ++
Sbjct: 91 YGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLI 150
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ Y+ I+ F +G +D +T+ +IHG + +
Sbjct: 151 K-DGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEM 209
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +RK+++ + L + G NE+ +
Sbjct: 210 KKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTI 269
Query: 291 VKCYCELG 298
+ Y LG
Sbjct: 270 MHGYASLG 277
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 135/316 (42%), Gaps = 9/316 (2%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
+ Y+ LI K+++ A +F + GIKPD ++N++I A G + A+ +
Sbjct: 123 MKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVK 182
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M + +KP ++T+ I GF+ G + + +G V TY +LI G ++
Sbjct: 183 EM-QKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEK 241
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
R + ++ +EM G+ P+ ++ G + + ++ L G +++
Sbjct: 242 RKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTY 301
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS--VG 345
+ L+K C+ GR+ + +TK + + + F I + + R D E + +
Sbjct: 302 EALLKACCKSGRM----QSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQ 357
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRA 404
+M ++G+ I + + R ++ +K K TY L+ G+ RA
Sbjct: 358 QMKREGVQ-PDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARA 416
Query: 405 GLSGKLDSVINEMKFA 420
L K S EMK +
Sbjct: 417 SLPEKALSCFEEMKLS 432
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M AQ I ++ ++N LI GDV A L + M E +P
Sbjct: 311 SGRMQS---ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQM-KREGVQP 366
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FI+ S G++ K + G NV+TY +LI+G +A + +
Sbjct: 367 DIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCF 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCAR 262
EEM G+ P + ++ L +R
Sbjct: 427 EEMKLSGLKPDRAVYHCLMTSLLSR 451
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ A + ME +GI ++++++ GD L +FE P+ TY
Sbjct: 33 NMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECG-LNPSVITY 91
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I+ ++ LG V + AG N++TY LI+G LK +D+ + +E+++
Sbjct: 92 GCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIK 151
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
GI P + + ++ C K+DR +K
Sbjct: 152 DGIKPDVVLYNNIITAFCGMGKMDRAVCTVK 182
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
EY +++ + ++ A F SM A+GI+P S V+ SLI A D+ ALS M
Sbjct: 308 EYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKM 367
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GF+ +GN DA ++W+ +N Y ++I+ + +
Sbjct: 368 -KEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCN 426
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
D + EM GI I I +++G
Sbjct: 427 MDQAEALVREMEGEGIDAPIDIYHTMMDG 455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V ME+ GIK + ++ LI L D A ++FE +V
Sbjct: 484 YGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVV 543
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ Y+ I F +G +D +T+ +IHG +A +
Sbjct: 544 -KDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEM 602
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +R++++ L + G NE+ +
Sbjct: 603 KRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTI 662
Query: 291 VKCYCELG 298
+ Y LG
Sbjct: 663 MHGYAALG 670
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M AQ I ++ V+N LI GDV A L + M KP
Sbjct: 704 SGRMQS---ALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGG-VKP 759
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FI+ G++ +K +G NV+TY +LIHG +A + R +
Sbjct: 760 DIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCF 819
Query: 238 EEMMSLGIIPSIPILEKVLEGLCAR 262
+EM G+ P + ++ L +R
Sbjct: 820 QEMKLAGLKPDKAVYHCLMTALLSR 844
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 4/186 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M G P FN+LI + + A+ + + M + PN TY +
Sbjct: 605 ALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAG-VSPNEHTYTTIM 663
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+++LG+ +++ G ++V TYE+L+ K+ S +EM + I
Sbjct: 664 HGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIP 723
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG---RVDEL 303
+ + +++G R + ++ + GG K + + + C+ G R ++
Sbjct: 724 RNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKM 783
Query: 304 EEQLET 309
E++ET
Sbjct: 784 MEEMET 789
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/218 (18%), Positives = 94/218 (43%), Gaps = 3/218 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + N+ A + ME +GI ++++++ G+ L++FE +
Sbjct: 414 YGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLK 473
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ +Y I+ ++ +G + + +AG N++TY LI+G LK +D+
Sbjct: 474 ECG-FAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDW 532
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +E+++ G+ P + + ++ C +DR +K + + +
Sbjct: 533 ANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPI 592
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
+ + G + + + + + P V H F+ +I
Sbjct: 593 IHGFARAGEMKRALDVFDMMRRSGCIPTV--HTFNALI 628
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
E ++P++ +FN L+ SGD+ +AL + M S PN TY I G G
Sbjct: 191 EHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGR 250
Query: 195 VDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+ + + ++ + TY LI G D + E M S G P++
Sbjct: 251 LKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYS 310
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ G C +L+ K + G K + L+ C+C +GR+DE E L+ +T+
Sbjct: 311 VLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTE 369
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +++LI +G + A+ LFE MVS ++ P++ TY I GF G D K
Sbjct: 233 PNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARK 292
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ G NV Y L++G K + ++EM S G+ P ++ C
Sbjct: 293 IMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFC 352
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++D LK + K + L+K C GR DE LE L
Sbjct: 353 GVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENL 402
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + G P+ ++ L+ G + A +F+ M SS KP++ Y I
Sbjct: 290 ARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSG-LKPDTVGYTTLI 348
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F +G +D + + T+ L+ G + FD R E + G+
Sbjct: 349 NCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVY 408
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ VL LC + +L++ + L +L G+ + + +L+ C CE G VD
Sbjct: 409 LNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTA 468
Query: 307 LETLTKCNQSPE 318
L LT+ +PE
Sbjct: 469 LFGLTQMGFTPE 480
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 130/317 (41%), Gaps = 8/317 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ML+ N+ + L+ + + A ++ M++ G+KPD FN+L A G
Sbjct: 453 DEMLQPNDRTCN---ILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 509
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
TA + + + KPN +T ++G+ G ++ +++ G N+ +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SLI G L D D V + M G+ P + ++ + + R + +L
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
GG + + L K Y G ++ ++ L + K P V++ ++ II + + +
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVI--YTQIISGWCSAGEM 687
Query: 338 DDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATYD 395
+M G GLS + E +I + + + L ++G + R T
Sbjct: 688 KKAMQVYKKMCGIVGLS-PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQ 746
Query: 396 FLVAGYRRAGLSGKLDS 412
+ G++ G+S D+
Sbjct: 747 LIADGWKSIGVSNSNDA 763
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/416 (20%), Positives = 170/416 (40%), Gaps = 44/416 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 288 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 347
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L +++K ++ L + +I S + N+
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL--FNAIINASSESGNL 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L ++M+ E +PN +T +
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 185 FISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMS 242
+ + + + +A N Y + G +V T+ +L + + D M+
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQ-SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLH 524
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ ++ G C K++ F + G N + L+K + + +D
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ E ++ + + P+V+ FS ++ ++ SVG M
Sbjct: 585 VGEVVDLMEEFGVKPDVVT--FSTLMNAWS----------SVGDMK-------------- 618
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
RC +++ D ++G + L GY RAG K ++N+M+
Sbjct: 619 ------RCE-----EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMR 663
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 9/275 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL----QSSSPKKAQLVLEWRLDKMLKGNESC 107
+++ + ++ + ++ + + S++ LI + KA VL+ ++ + N
Sbjct: 239 MNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPN--- 295
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L + LI K N+P +M VF M Q +KP+ +NSLI G + A+S+ +
Sbjct: 296 LTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRD 355
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
MVS+ +PN TY+A I+GF + + + G + Y LI K
Sbjct: 356 KMVSAG-VQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKL 414
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D EEM GI+P + ++ GLC ++ K L G +
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTF 473
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L++ YC G + L+ ++K P L +
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY 508
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLIA + N+ A +F + ++G+ PD F+ L+ G+ A L + M
Sbjct: 439 YNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEM- 496
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDA-MNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S KP TY+ + G+ GN+ A N +NV +Y L+ G +
Sbjct: 497 SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ + EM+ G++P+ E V E
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITYEIVKE 584
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 132/314 (42%), Gaps = 10/314 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL----SLF 166
Y+ LI++ GK AM +F+ M+ G +PD++V+N+LI A L + D AL
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYL 195
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E +PN TY+ + F+ G VD +N + + S +V T+ ++ K
Sbjct: 196 DKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGK 255
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ +++ ++++ K L+ K
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ Y + +D+ E + + N P + + +I +Y +
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT--YECMIMMYGYCGSVSRAREIFEE 373
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR--ATYDFLVAGYRRA 404
+G+ K A + ++ Y R Y D H ++++ +TY FL Y +A
Sbjct: 374 VGESDRVLK-ASTLNAMLEVYCRNGLYIEADKLF-HNASAFRVHPDASTYKFLYKAYTKA 431
Query: 405 GLSGKLDSVINEMK 418
+ ++ ++ +M+
Sbjct: 432 DMKEQVQILMKKME 445
>gi|297844892|ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336169|gb|EFH66586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 903
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 17/259 (6%)
Query: 127 AMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
A+HV+ M + + PD S V N+ C C G V A++ + M +S + N T
Sbjct: 209 ALHVYDQMISFEVSPDVFTCSIVVNAY-CRC---GKVDKAMAFAKEMDNSLGLELNVVTC 264
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++ I+G++ +G+V+ M + G S NV T+ SLI K + ++ +E +
Sbjct: 265 NSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTFTSLIKSYCKKGLMEEAEQVFELVTE 324
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++P + +++G C ++ +++ G + N + L+ YC+ G++ E
Sbjct: 325 KKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMGVRTNTTICNSLINGYCKSGQLVE 384
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
E+ L + + P+ H ++ ++ Y + +D+ GRM ++ E V
Sbjct: 385 AEQILTRMNDWSLKPD--HHTYNTLVDGYCRAGHVDEALKLCGRMCQK-------EVVPT 435
Query: 363 VICSYFRCAAYDRLDLFLD 381
V+ Y R+ F D
Sbjct: 436 VMTYNILLKGYSRIGAFHD 454
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + T M +KPD +N+L+ +G V AL L M +E P TY+ +
Sbjct: 385 AEQILTRMNDWSLKPDHHTYNTLVDGYCRAGHVDEALKLCGRM-CQKEVVPTVMTYNILL 443
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+S +G + + + G + N + +L+ K DFD + +E +++ G++
Sbjct: 444 KGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGDFDEAMKLWENVLARGLL 503
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL 272
L ++ GLC K++ K L
Sbjct: 504 TDTITLNVMISGLCKMEKVNEAKEIL 529
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD + LI C GD+ A +L + M + + PN TY+A I G LGNVD +
Sbjct: 753 PDEYTYTILIHGCAIDGDINKAFNLRDEM-ALKGIIPNIVTYNALIKGLCKLGNVDRAQR 811
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + N TY +LI G +K+ D R E+M+ G++
Sbjct: 812 LLRKLPQKGTTPNAITYNTLIDGLIKSGDVAEAMRLKEKMIEKGLV 857
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 6/210 (2%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W++ MLK + +E +C L K+ + AM ++ ++ A+G+ D+ N +I
Sbjct: 459 WKM--MLKRGVTA-NEISCSTLLEALFKLGDFDEAMKLWENVLARGLLTDTITLNVMISG 515
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
LC + V V+ KP+ +TY A G+ ++GN+ G
Sbjct: 516 -LCKMEKVNEAKEILDNVNIFRCKPDVQTYQALSHGYYNVGNLKEAFAVKDFMEKKGIFP 574
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
++ Y +LI G+ K + + V E+ + G+ P++ ++ G C +D+ +
Sbjct: 575 TIEMYNTLISGAFKYKHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATC 634
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G +N N+ K+ L + DE
Sbjct: 635 FEMIEKGITLNVNICSKIANSLFRLDKFDE 664
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 12/188 (6%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A V S + + P++ V+N I +G + A LF ++SS+ + P+ TY
Sbjct: 702 IAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLTDAQKLFSDLLSSDRFIPDEYTYTIL 761
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G + G+++ G N+ TY +LI G K + D R ++ G
Sbjct: 762 IHGCAIDGDINKAFNLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLRKLPQKGT 821
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK-LVKCYCELGRVDELE 304
P+ +++GL +KS + ++ E M +K LV+ + G VD+ +
Sbjct: 822 TPNAITYNTLIDGL--------IKS---GDVAEAMRLKEKMIEKGLVRGSYKQGDVDKPK 870
Query: 305 EQLETLTK 312
E L+ K
Sbjct: 871 EVLDPGVK 878
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 15/183 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF + + + PD + LI +G + A+ + + M+ + N+ ++ I
Sbjct: 315 AEQVFELVTEKKLVPDQHMHGVLIDGYCRNGRICDAVRVHDYMIEMG-VRTNTTICNSLI 373
Query: 187 SGFSSLGN-VDA------MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+G+ G V+A MN W + TY +L+ G +A D +
Sbjct: 374 NGYCKSGQLVEAEQILTRMNDW-------SLKPDHHTYNTLVDGYCRAGHVDEALKLCGR 426
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M ++P++ +L+G V S K +L G NE L++ +LG
Sbjct: 427 MCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVTANEISCSTLLEALFKLGD 486
Query: 300 VDE 302
DE
Sbjct: 487 FDE 489
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
V N+ A V ME +GI P ++N+LI + L I + + P
Sbjct: 554 VGNLKEAFAVKDFMEKKGIFPTIEMYNTLISGAFKYKHLNKVADLV-IELRARGLTPTVA 612
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY A I+G+ ++G +D I G ++NV + + + FD +++
Sbjct: 613 TYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKFDEACLLLQKI 672
Query: 241 MSLG-IIPSIPILEKVLE 257
+ ++P L++ LE
Sbjct: 673 VDFDLLLPGYQSLKEFLE 690
>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 707
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 20/270 (7%)
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV---------FTSMEAQGIKPDSAV 145
+R + +G E DE ++ K N F+ V F M G +PD
Sbjct: 186 FRASRDFEGAEKLFDE---MLQRGVKPNNFTFSTMVNCANKPVELFEKMSGFGYEPDGIT 242
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
++++ A S +V A+SL++ ++ E++ ++ + A I +S GN D K Y
Sbjct: 243 CSAMVYAYALSNNVDKAVSLYDRAIA-EKWCLDAAAFSALIKMYSMAGNYDRCLKIYQEM 301
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
G NV TY +L+ LKA Y+EM S G+ P +LE
Sbjct: 302 KVLGVKPNVVTYNTLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYS 361
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLETLTKCNQSPEVLLH 322
+ K + G G + ++ KL+ Y ++G +D E+ ++ + C
Sbjct: 362 EDALGVYKEMKGNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWT--- 418
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
F+ +I +Y+ S ++ + E + M + G
Sbjct: 419 -FASLIAIYSRSGKVSEAEGMLNEMIQSGF 447
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YACL+ + A+ V+ M+ G+ + ++N L+ G + A+ +F M
Sbjct: 348 YACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMN 407
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS +P+S T+ + I+ +S G V I +GF + SL+H KA+
Sbjct: 408 SSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRT 467
Query: 231 DSVDRFYEEMMSLGIIPS 248
D V + +++++ LGI+P+
Sbjct: 468 DDVVKVFKQLLELGIVPN 485
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 42/244 (17%)
Query: 107 CLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL---------- 154
CLD ++ LI + N + ++ M+ G+KP+ +N+L+ A L
Sbjct: 272 CLDAAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEKHRQAKA 331
Query: 155 ---------CSGDVVTALSLFEIMVSS----------EEYKPN-----SKTYDAFISGFS 190
S D +T L E+ + +E K N + Y+ ++ ++
Sbjct: 332 IYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYA 391
Query: 191 SLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G +D A+ +Y N + + T+ SLI ++ + EM+ G P+I
Sbjct: 392 DMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTI 451
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L ++ ++ D V K LL G N++ L+ + + E+L
Sbjct: 452 FVLTSLVHCYGKAKRTDDVVKVFKQLLELGIVPNDHFCCSLLNVLTQAPK-----EELGK 506
Query: 310 LTKC 313
LT C
Sbjct: 507 LTDC 510
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 121/290 (41%), Gaps = 8/290 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGN-ESCLD 109
V + T + + F + ++ LI L +S KKA + + + KG L
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFK---EMKRKGRFIPDLK 260
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y L+ G +++ V+ M GIKPD + LI A SG A+ +F M
Sbjct: 261 TYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEM 320
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S P+ Y I+G S+ +D K++ + +GF + V T ++I +A +
Sbjct: 321 EESG-CMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
F + +EM GI P+ + +L L K++ + + + G + N
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+V +C RVD + + + + P +H FS +I +RL++
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLP--CMHMFSALINGLCFDNRLEE 487
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 7/232 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCL--DEYACLIALSGKVQN 123
F S + LI +L K Q L W L + ++ SCL D + ++ + +
Sbjct: 149 GFRYSAEGFHNLIEALG----KIKQFRLVWSLVEAMRCR-SCLSKDTFKIIVRRYARARK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ F M + G+K D + +N LI S V A ++F+ M + P+ KTY
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYT 263
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ G+ ++ + Y + AG +V Y LI K+ D + + EM
Sbjct: 264 VLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEES 323
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
G +PS + ++ GL + +LD + + G+ + ++ YC
Sbjct: 324 GCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYC 375
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G ++ + A+ F + G + N++I A + + A + + M
Sbjct: 332 YCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMR 391
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S PN++TYD ++ ++ + G + TY ++
Sbjct: 392 KSG-IGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERV 450
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +++M G++P + + ++ GLC +L+ + + +L G + + L
Sbjct: 451 DMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNL 510
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+ E GR+ +E + L ++P
Sbjct: 511 KEALVEGGRITLAQEVTQRLEMLRRTP 537
>gi|357463937|ref|XP_003602250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491298|gb|AES72501.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 946
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ME +G KPD +N L + V A+ L M S+ KPNS T+ I GF
Sbjct: 462 IFKEMEEKGFKPDVVAYNVLAAGLCGNRHVSEAMDLLNYM-DSQGVKPNSTTHKIIIEGF 520
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-- 247
S G ++ ++ + +V+ Y +++ G +A + + E+ + G
Sbjct: 521 CSEGKIEEAEGYFNSMKDE----SVEIYTAMVSGYCEADLIEKSYELFHELSNRGDTAQE 576
Query: 248 -------SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
S + KVL LC + + R +S F LG G+ + ++K YC + +
Sbjct: 577 SSCLKQLSKVLYSKVLAELCQKGNMQRARSLFDFFLGRGFTPDVVTYTIMIKSYCTMNCL 636
Query: 301 DELEEQLETLTKCNQSPEVLLH 322
E + + + P+V+ +
Sbjct: 637 QEAHDLFQDMKSRGIKPDVITY 658
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 38/270 (14%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLI 150
L + L + L+ N + +D YA + G + AM VF ME Q + PD V++SLI
Sbjct: 283 LGYDLLRALRENNAPIDVYAYTAVIRGFCNEMKLDKAMQVFYDMEWQRLVPDCHVYSSLI 342
Query: 151 CACLCSGDVVTALSLFEIMVSS----------------EEYKPNSKTYDA---------F 185
C + D+V AL L+E M+ E +S+ D F
Sbjct: 343 CGYCKTHDLVKALDLYEDMILKGIKTNCVIVSCILHCFAEMGEDSRVVDTFKEVKQSGVF 402
Query: 186 ISGFS---------SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ G + LG +D + + +++ Y + I G D
Sbjct: 403 LDGVAYNIVFDSLFKLGKMDEVAGMLEDLKSMHIDFDIKHYTTFIKGYCLQGKPDKAYII 462
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
++EM G P + + GLC R + L ++ G K N + +++ +C
Sbjct: 463 FKEMEEKGFKPDVVAYNVLAAGLCGNRHVSEAMDLLNYMDSQGVKPNSTTHKIIIEGFCS 522
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
G+++E E ++ ++S E+ SG
Sbjct: 523 EGKIEEAEGYFNSMK--DESVEIYTAMVSG 550
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 13/284 (4%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+PD +N LI A G AL +M+ + KP+ T+ I+ F + GNV
Sbjct: 310 EPDVYAYNILINAYRIRGRTSDALGFLHLMIKNG-CKPSLITFSTIITAFCNEGNVVEAR 368
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
K + G S NV Y +L+ G KARD + YEEM GI P ++ G
Sbjct: 369 KIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAG- 427
Query: 260 CARRKLDRVKSFLKFLLGGGWKINE-----NMAQKLVKCYCELGRVDELEEQLETLTKCN 314
K + L W ++ ++ V C G++DE + LE + +
Sbjct: 428 ----NYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKG 483
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD 374
P V+ F+ +I Y+ + D+ + M GL S+ M++ + +
Sbjct: 484 MPPSVVA--FNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQE 541
Query: 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
DL I + + + L+ GY + G + S+ EM+
Sbjct: 542 ARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEME 585
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F+ M +G P++ V+NSLI G + AL L E + + P+ T + I
Sbjct: 612 AYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKL-EREMRQKGLLPDIFTTNIII 670
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G + + +A G + + TY +LI G K D S D F +M + G
Sbjct: 671 NGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWD 730
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
P I ++G C+ +K+ R + L L+ G N ++ C
Sbjct: 731 PDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVC 779
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV + A ++ MEA+GI PD+ F++ I +G V A F M S + + PN+
Sbjct: 570 KVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEM-SKKGFVPNN 628
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y++ I G + G + K G ++ T +I+G K S + E
Sbjct: 629 FVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAE 688
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M +G+ P ++ G C + FL + GW + ++ +C +
Sbjct: 689 MHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQK 748
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
+ L+ L P + +
Sbjct: 749 ISRAVTMLDELIAVGVVPNTVTY 771
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 35/237 (14%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L M+K G + L ++ +I NV A +F ++ G+ P+ A++N+L+
Sbjct: 336 LHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFK 395
Query: 156 SGDVVTALSLFEIM--------------VSSEEYK--------------------PNSKT 181
+ DV A L+E M + + YK P+
Sbjct: 396 ARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSL 455
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
YD ++G G +D ++ + G +V + S+I +A D+ + Y+ M+
Sbjct: 456 YDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIML 515
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
G++PS +L GL + +L + L ++ G +N+ L+ Y ++G
Sbjct: 516 MFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVG 572
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 122/291 (41%), Gaps = 10/291 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEW--RLDKMLKGNESCL 108
V + T + + IF + ++ LI +L +S KKAQ + + R K + L
Sbjct: 215 VKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPD----L 270
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y L+ G +++ ++ M GI+PD + LI A SG A+ +F
Sbjct: 271 KTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYE 330
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M +S P+ Y I+G S +D K++ +GF + V T +++ +A
Sbjct: 331 MEASG-CMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRAS 389
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
F+ + +EM I P+ + +L L +K + + + + G + N
Sbjct: 390 KFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYT 449
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+V +C GRVD + + + P +H FS +I +RL++
Sbjct: 450 MMVGMFCSNGRVDMALNVWKQMGERGVLP--CMHMFSALINGLCFENRLEE 498
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/396 (20%), Positives = 157/396 (39%), Gaps = 55/396 (13%)
Query: 4 ACRVLSVAKSSRYLLM------------PLRFDRLLCNT--NTNSTSVSSSNPLISRLLQ 49
AC+VLS +S + + PLRF + + +S + ++ R++
Sbjct: 52 ACQVLSRTHTSGFCTVAQRFTDEHASAEPLRFTVTPGDAFGDGPPVGISEAAKMVCRIVS 111
Query: 50 V-PVSQIKTTLDSVDI--------------------------FAFNSSQFSWDAL-ITSL 81
P +I +TLD++ + +A FS+ A +L
Sbjct: 112 TQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNL 171
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNES-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
+ K Q L W L + ++ D + ++ + + V A+ F M G+K
Sbjct: 172 IEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLK 231
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
+ + +N LI S V A ++++ M ++ P+ KTY + G+ ++ +
Sbjct: 232 TELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKT 291
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
Y I AG +V Y LI K+ D + + EM + G +PS + ++ GL
Sbjct: 292 MYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLG 351
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP--- 317
+ +LD + + G+ + +V YC + + + ++ + +C P
Sbjct: 352 SEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSR 411
Query: 318 --EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+V+LH+ +I+ S + ++ RMG G
Sbjct: 412 TYDVILHY---LIK----SQKFEEAYNVFQRMGMDG 440
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 123/286 (43%), Gaps = 5/286 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M++ G+KPD +N++I A G AL L M S KPN TY I G G
Sbjct: 585 MQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSS-IKPNLITYSTLIVGLFEAG 643
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ ++GFS T+ ++ + R D + +E MM+ G+ I +
Sbjct: 644 AVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYN 703
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ LC + L+ + G G + L+ + + G +D + +
Sbjct: 704 TLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYH 763
Query: 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-A 372
SP V F+ ++ + R+ + + + M K+G+ S ++++ Y + +
Sbjct: 764 GISPNVAT--FNTLLGGLESAGRIGESDMVLNEMKKRGIE-PSNLTYDILVTGYGKQSNK 820
Query: 373 YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ + L+ + + + + +TY+ L++ + + G+ + + NEM+
Sbjct: 821 VEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQ 866
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 9/305 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIM 169
Y LI K N+P A V + + + PD+ V+N I CLC G A S E M
Sbjct: 527 YTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFI-NCLCMLGKSKEAESFLEEM 585
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S+ KP+ TY+ I+ S G K + N+ TY +LI G +A
Sbjct: 586 QSTG-LKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGA 644
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ EM S G P+ +VL+ R+ D + ++++ G + +
Sbjct: 645 VEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNT 704
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV+ C G + LE ++ +P+ + F+ +I + S LD+ + +M
Sbjct: 705 LVRVLCYNGMTRKAMVVLEEMSGRGIAPDTIT--FNALILGHFKSGHLDNAFSTYDQMLY 762
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSG 408
G+S A ++ D+ L+ +K + TYD LV GY + S
Sbjct: 763 HGISPNVAT-FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQ--SN 819
Query: 409 KLDSV 413
K+++V
Sbjct: 820 KVEAV 824
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 126/334 (37%), Gaps = 40/334 (11%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
KV ++ A V M+AQG+ D +NSL+ +G+V A + + M + +PN
Sbjct: 186 KVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTM-KRDGVEPNV 244
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY FI + VD Y + G +V T +L+ G K F + E
Sbjct: 245 VTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFRE 304
Query: 240 MMSLGIIPS-------IPILEKVLEG----------------------------LCARRK 264
M +G P+ I L K G LC K
Sbjct: 305 MEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGK 364
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+D K + L N L+ C+ G VD E+ L + + + SP V+ F
Sbjct: 365 IDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVT--F 422
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI 383
S II + + M ++G+ + VI F+C + LD++ + +
Sbjct: 423 SSIINGLVKRGWVGKATDYMREMKERGID-PNVVTYGTVIDGSFKCLGQEAALDVYHEML 481
Query: 384 KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ + D LV G ++ G K +++ EM
Sbjct: 482 CEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREM 515
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 43/286 (15%)
Query: 67 FNSSQFSWDALITS--LQS-SSPKKAQLVLE---WRLDKMLKGNESCLDEYACLIALSGK 120
+SS FS +L LQ+ S +++ L+LE W ++ L + + + ++ +G
Sbjct: 655 MSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGM 714
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV---------- 170
+ AM V M +GI PD+ FN+LI SG + A S ++ M+
Sbjct: 715 TRK---AMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVAT 771
Query: 171 ------------------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
+P++ TYD ++G+ N + Y +
Sbjct: 772 FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMV 831
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF V TY +LI K + EM + G++P+ + ++ G R
Sbjct: 832 GKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGT 891
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V+ FLK + G+ ++ + + + + G E L+ L K
Sbjct: 892 EVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLLKNLYK 937
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 42/306 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K NV A V + ME + I P+ F+S+I + G V A M
Sbjct: 387 YTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREM- 445
Query: 171 SSEEYKPNSKTYDAFISG-FSSLGNVDAM-------------NKWYAANIAAGFSVNVQ- 215
PN TY I G F LG A+ NK+ ++ G N +
Sbjct: 446 KERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKI 505
Query: 216 --------------------TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
Y +LI G K + + + +E+ ++P +
Sbjct: 506 EKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVF 565
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ LC K +SFL+ + G K ++ ++ G+ + + L + + +
Sbjct: 566 INCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSI 625
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
P L+ + + I+ L+ + ++ +Y + M G S S ++ C+ R
Sbjct: 626 KPN-LITYSTLIVGLFE-AGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA----CSQGRR 679
Query: 376 LDLFLD 381
DL L+
Sbjct: 680 SDLILE 685
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/323 (19%), Positives = 132/323 (40%), Gaps = 9/323 (2%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMH-VFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+L+ +ES +D + + +SG + A + M +G+ D+ N+++ G
Sbjct: 94 LLRSSES-VDTVSYNVVMSGFSEQGGLAPEALLAEMCKRGVPFDAVTVNTVLVGLCRDGR 152
Query: 159 VVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
V A +L E+MV + +++ + G+ +G+++ A G V+V Y
Sbjct: 153 VDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGY 212
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SL+ G +A + D+ + M G+ P++ + C R +D S + ++
Sbjct: 213 NSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVR 272
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G + LV C+ GR E + K +P + + +I A + R
Sbjct: 273 KGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCM--LIDTLAKAQRG 330
Query: 338 DDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYD 395
++ +G + +G+ ++ +C + + D+F + ++ TY
Sbjct: 331 NESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKID--EAKDMFRHALSDNHTPNGVTYT 388
Query: 396 FLVAGYRRAGLSGKLDSVINEMK 418
L+ +AG + V++EM+
Sbjct: 389 VLIDALCKAGNVDGAEQVLSEME 411
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 6/249 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK--PNSKTYDAFISGFSS 191
M G PD+ +N L+ AL L +M + + PN +Y I+GF +
Sbjct: 156 MPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFT 215
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD + + G +V TY ++I G KA+ FD + +++M+ G+ P+I
Sbjct: 216 EGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDT 275
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ G + K V L+ + GG K N L+ C+ GR E +++
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI 335
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
P V + ++ YA L ++ + M G+S + + +Y +C
Sbjct: 336 GKGIKPSVTT--YGIMLHGYATKGALSEMHDLLNLMVANGIS-PNHHIFNIFFSAYAKCG 392
Query: 372 AYDR-LDLF 379
D+ +D+F
Sbjct: 393 IIDKAMDIF 401
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M GI P+ FN+++C G V+ L + + +P+ +Y+ I G
Sbjct: 470 LFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVD-SIECMGVRPDVISYNTLIDGH 528
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G +D +K ++ G + +Y +L+HG KA DS + +M+S GI P +
Sbjct: 529 CLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGV 588
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+L GL ++ K ++ G K + ++ C+ VDE + +
Sbjct: 589 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQN 648
Query: 310 L 310
L
Sbjct: 649 L 649
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 3/222 (1%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F SM +GIKP + ++ G + L +MV++ PN ++ F S ++
Sbjct: 331 FDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG-ISPNHHIFNIFFSAYA 389
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G +D + G S + +Y +LI K D + + +M++ G+ P I
Sbjct: 390 KCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIV 449
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ ++ GLC K ++V+ +L G N ++ C+ GRV E + ++++
Sbjct: 450 VFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSI 509
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P+V+ ++ +I + L+ +D+ + M GL
Sbjct: 510 ECMGVRPDVI--SYNTLIDGHCLAGTIDEASKLLEGMVSVGL 549
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 37/231 (16%)
Query: 128 MH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
MH + M A GI P+ +FN A G + A+ +F M + P++ +Y A I
Sbjct: 362 MHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKM-RQQGLSPDAVSYGALI 420
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
LG VD + I G + ++ + SL++G ++ V+ + EM+++GI
Sbjct: 421 DALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIH 480
Query: 247 PSIPILEKVL-----------------------------------EGLCARRKLDRVKSF 271
P+I +L +G C +D
Sbjct: 481 PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 540
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ ++ G K + L+ YC+ GR+D + +P V+ +
Sbjct: 541 LEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTY 591
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 49/296 (16%)
Query: 75 DALITSLQSSSPKKAQL---VLEWRLDKMLKGN--ESCLDEYACLIALSGKVQNVPFAMH 129
D I Q+ K QL + +LKG E +D +A + A +G VQNV
Sbjct: 640 DEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA-NGLVQNVVTYRL 698
Query: 130 V----------------FTSMEAQGIKPDSAVFNSLICACLCSGDV-------------- 159
V F++ME G P+S + N+L+ L GD+
Sbjct: 699 VVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERN 758
Query: 160 ----VTALSLFEIMVSSEEYKPNSKT----YDAFISGFSSL-----GNVDAMNKWYAANI 206
+ S+ + SS+EY+ ++K+ Y SS +D + +
Sbjct: 759 FSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREML 818
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G + +V TY +++HG + F Y M++ +I +L GLC +D
Sbjct: 819 MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVD 878
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ L G ++N ++ + GR ++ + + P+V+ +
Sbjct: 879 EAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTY 934
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 9/199 (4%)
Query: 117 LSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSE 173
L G Q F A ++ +M G K D +N +I LC + V A+ +F+ + S +
Sbjct: 595 LHGLFQTKRFSEAKELYLNMINSGTKWDIYTYN-IILNGLCKSNCVDEAIKMFQNLCS-K 652
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ N T++ I G + +AA A G NV TY ++ ++ +
Sbjct: 653 GLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEF 712
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
D + M G P+ +L ++ L R + R ++L L + + + L+
Sbjct: 713 DSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISI 772
Query: 294 YCELGRVDELEEQLETLTK 312
+ DE + ++L K
Sbjct: 773 FSS----DEYQHHAKSLPK 787
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 1/186 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + A+ + M G++P+ FN+LI + + A +F M
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEM- 334
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY+ I+G+S G+ + ++Y + G ++ TY +LI G K
Sbjct: 335 KALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKT 394
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+F +E+ ++P+ ++ G C RR DR K ++ G NE L
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNIL 454
Query: 291 VKCYCE 296
+ +C+
Sbjct: 455 ISAFCK 460
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+ + + ME G + +N+LI G + +AL L + M+ +P
Sbjct: 251 SGKLDK---GIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKL-KNMMGKNGLQP 306
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T++ I GF + +K + A N TY +LI+G + D + RFY
Sbjct: 307 NVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
E+M+ GI I ++ GLC + K + F+K L
Sbjct: 367 EDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKEL 404
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A + M GI+ D +N+LI LC + F +
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILG-LCKQAKTRKAAQFVKEL 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I G N D + Y + I +G N QT+ LI K DF
Sbjct: 405 DKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDF 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
D + EM+ I + +V GL + K VK L+ + G
Sbjct: 465 DGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKELLQEMEG 511
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 3/201 (1%)
Query: 148 SLICACLCSGDVVTALSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
S++ L +G V +F+ ++ S E + +D+ F+ L +
Sbjct: 136 SILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMK 195
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF V++ + + L D RFY EM I P+ L V+ G C KLD
Sbjct: 196 DYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLD 255
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
+ L+ + G++ L+ +CE G + + + K P V+ F+
Sbjct: 256 KGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVT--FNT 313
Query: 327 IIRLYALSDRLDDVEYSVGRM 347
+I + + +L + G M
Sbjct: 314 LIHGFCRAVKLQEASKVFGEM 334
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 16/247 (6%)
Query: 65 FAFNSSQFSWDALI-TSLQSSSPKKAQLVLEWRLDKMLKGN----ESCLDEYACLIAL-- 117
F FS D +I +L KK ++ K+++ N + C+ Y LI +
Sbjct: 544 FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICI--YNVLINMFF 601
Query: 118 -SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEY 175
G V+NV + + + G++PD +N++IC CS + + A+ LFE++
Sbjct: 602 REGCVENV---LELLREIIKYGLEPDIVTYNTMICG-YCSLKIFSKAIKLFEVLKCGRT- 656
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+PN+ T+ I + G +D +++ + G N+ TY LI G K + +S
Sbjct: 657 QPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFE 716
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YE+M+ + P+I +++GLC + ++ + +G + L++ YC
Sbjct: 717 LYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYC 776
Query: 296 ELGRVDE 302
++GR+ E
Sbjct: 777 KVGRLAE 783
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 3/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F+ A+G+K D +F+S++ A + GD+ A+ ++ M+ E PN TY I+G
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLK-EGISPNVVTYSILINGL 390
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G V + + G +V TY SLI G K+ + Y M+ G +P +
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ ++ GL + +D F + G +N + L+ L R + +
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYIL 510
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P+V+ ++ +++ A RLD+ ++ K+G S
Sbjct: 511 MGMYKVIPDVVT--YTVLVKGLAEQGRLDEALALFFQLLKKGFS 552
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+V ++ A+ V+T M +GI P+ ++ LI +G V+ A +F + + +P+
Sbjct: 357 RVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFG-QILKQGLEPSV 415
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY + I GF N+ Y + G +V LI+G + D RF+ +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK-FLLGGGWKINENMAQK--LVKCYCE 296
+ G+ + + +++G C R L R + LK ++L G +K+ ++ LVK E
Sbjct: 476 AVKRGLTLNNYLFNALIDG-CFR--LKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAE 532
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
GR+DE L K SP+ +++
Sbjct: 533 QGRLDEALALFFQLLKKGFSPDHIIY 558
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 3/225 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F +G+ ++ +FN+LI C L ++ I++ + P+ TY +
Sbjct: 469 ALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMY-ILMGMYKVIPDVVTYTVLV 527
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G +D + + GFS + Y +LI G K RD + + ++ M S GI
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIF 587
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I I ++ ++ V L+ ++ G + + ++ YC L + +
Sbjct: 588 PDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKL 647
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
E L P + F+ +I Y R+DD M ++G
Sbjct: 648 FEVLKCGRTQPNAIT--FTILIDAYCKDGRMDDAMLIFSSMLERG 690
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF + QG++P ++SLI S ++ L+ IM+ + + P+ I
Sbjct: 399 ACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR-KGHVPDVVVCSMLI 457
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G +D +++ + G ++N + +LI G + + + Y M +I
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI 517
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
P + +++GL + +LD + LL G+ + + L+ +C+
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCK 567
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 7/216 (3%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ VFNS L G+V L+ +V P + + G +
Sbjct: 203 KGLGVYEFVFNSF----LKRGEVEKGLNFHRALVE-RGLVPKIVDCNKILKGLCMGNQIG 257
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ ++ + +G S N+ T+ +LI+ K D Y M+ GI+P + I ++
Sbjct: 258 VASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILI 317
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GL KL+ S L G K++ + ++ Y +G + + E + K S
Sbjct: 318 NGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGIS 377
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
P V+ +S +I + R+ + G++ KQGL
Sbjct: 378 PNVVT--YSILINGLCRNGRVLEACGVFGQILKQGL 411
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 2/170 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D M++ G L ++ LI + K + A ++ M +GI PD +++ LI
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFR 322
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + SLF M + K + + + + + +G++ + Y + G S NV
Sbjct: 323 AGKLEEGNSLFS-MALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
TY LI+G + + +++ G+ PS+ +++G C L
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENL 431
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 8/193 (4%)
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
YE + + LK + + F+ ++ G++P I K+L+GLC ++ F +
Sbjct: 207 VYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMM 266
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYAL 333
+ G N L+ YC+ R+DE + + P+++++ +G+ R L
Sbjct: 267 VRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKL 326
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRA 392
+ ++ R K + S+ ++ +Y R + ++++ +K
Sbjct: 327 EEGNSLFSMALARGVKMDVVIFSS-----IMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381
Query: 393 TYDFLVAGYRRAG 405
TY L+ G R G
Sbjct: 382 TYSILINGLCRNG 394
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 2/226 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V ME+ + PD +N+LI C L E M S +PN+ T++ +
Sbjct: 156 AIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMV 215
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ + + +G S + TY ++I+G KA R +EM G+
Sbjct: 216 KWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLK 275
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I L +L LC +K + G+ ++E L+ Y + + D+ +
Sbjct: 276 PDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKL 335
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
E + K P V+ ++ +IR LS + D + + ++GL
Sbjct: 336 WEEMKKRGIVPSVV--SYNPLIRGLCLSGKTDQAVDKLNELLEKGL 379
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 17/216 (7%)
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-------- 262
S++V TY +L+ G D R +EM SL +IP + +++G C +
Sbjct: 134 SIDVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDG-CFKWRGSTEGF 192
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
R L+ +KS GG + N +VK + + G+++E + + + + SP+
Sbjct: 193 RLLEEMKS------RGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFT- 245
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDH 382
++ +I + + +L + + M ++GL M+ + +L +
Sbjct: 246 -YNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKA 304
Query: 383 IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
K Y L TY L+ GY + K + EMK
Sbjct: 305 RKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMK 340
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 3/211 (1%)
Query: 108 LDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LDE Y LI K + A+ ++ M+ +GI P +N LI SG A+
Sbjct: 311 LDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDK 370
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
++ + P+ + + I G+ G VD +++ + F ++ T L+ G
Sbjct: 371 LNELLE-KGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLC 429
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ + + + +S + ++ LC +LD + + ++ ++
Sbjct: 430 RVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQY 489
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+V+ GR +E E+ + L++ Q+
Sbjct: 490 TYNAIVRALTHAGRTEEAEKFMSKLSETGQA 520
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 10/347 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ LI SL + KKA V++ + + L+ N + Y LI K +V A+ V
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPN---VVTYNVLINCMCKEGSVKEAIGVLK 279
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-YKPNSKTYDAFISGFSS 191
M +G+ PD +N+LI ++ A+ L E MV + KPN T+++ I G
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G + + A G VN+ TY LI G L+ +EM SLG+ P
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFT 399
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G C ++DR + L + G + L+ CE G ++ +
Sbjct: 400 YSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD 459
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
N P ++ +S +I + L + + + +GL+ A +VI + +
Sbjct: 460 --NNFPLDVV-AYSTMIHGACKAGDLKTAKELLKSIVDEGLT-PDAVTYSIVINMFAKSG 515
Query: 372 AYDRLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEM 417
+ + L + S L A +D L+ GY G K+ +I EM
Sbjct: 516 DMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 7/200 (3%)
Query: 140 KPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+P++ + L+ A LC+ + A+ L M S+ + + TY I G VD
Sbjct: 112 RPNAVSYTVLMRA-LCADRLADQAVGLLRSMRSAG-VRADVVTYGTLIRGLCDAAEVDKA 169
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ +G NV Y SL+ G K+ ++ V + + EM GI P + + +++
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC K + + ++ G + N L+ C C+ G V E L+ +++ +P+
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Query: 319 VLLHFFSGIIRLYALSDRLD 338
V+ ++ +I+ LSD L+
Sbjct: 290 VVT--YNTLIK--GLSDVLE 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 39/232 (16%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M +GI+PD ++ LI + G A + ++MV +PN TY+ I+
Sbjct: 207 VFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMV-RRGLEPNVVTYNVLINCM 265
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P 247
G+V G + +V TY +LI G + D EEM+ I P
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325
Query: 248 SIPILEKVLEGLC---ARRKLDRVKSFLK------------FLLGGGWKIN------ENM 286
++ V++GLC R+ +V++ ++ L+GG +++ E M
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELM 385
Query: 287 AQK--------------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ L+K +C++ +VD E+ L T+ PE L H+
Sbjct: 386 DEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPE-LFHYI 436
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 41 NPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLD 98
N LI LL+V V + +D + F++ LI + +A+ +L D
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425
Query: 99 KMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
+ G E L Y L+ + + A ++F M+ D ++++I +GD
Sbjct: 426 R---GIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDVVAYSTMIHGACKAGD 481
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
+ TA L + +V E P++ TY I+ F+ G+++A N A+GF +V ++
Sbjct: 482 LKTAKELLKSIVD-EGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFD 540
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGI 245
SLI G + + V EM++ I
Sbjct: 541 SLIQGYSTKGEINKVLELIREMITKNI 567
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 3/228 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ LI +L S + + L L L +KG + + LI KV + + +F
Sbjct: 372 TFNTLIVALCSQNRLEEALDLAREL--TVKGLSPDVYTFNILINALCKVGDPHLGIRLFE 429
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M++ G PD +N LI G +V AL L + M S ++ TY+ I
Sbjct: 430 EMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEM-ESNGCPRSTVTYNTIIDALCKQ 488
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
++ + + A G S + T+ +LI G KA+ D E+M+ G+ PS
Sbjct: 489 MRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITY 548
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+L C + L + L+ + G++I+ L+ C+ GR
Sbjct: 549 NSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 596
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + +G+ PD FN LI A GD + LFE M SS P+ TY+ I
Sbjct: 389 ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-CAPDEVTYNILI 447
Query: 187 SGFSSLGN-VDAMN--KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
S+G V+A++ K +N G + TY ++I K + + +++M +
Sbjct: 448 DHLCSMGKLVNALDLLKEMESN---GCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAH 504
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI S +++GLC +++D ++ ++ G + + ++ YC+ G + +
Sbjct: 505 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKA 564
Query: 304 EEQLETLT 311
+ LET+T
Sbjct: 565 ADILETMT 572
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 1/163 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A VF M+A GI + FN+LI + + A L E MV
Sbjct: 478 YNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 537
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P++ TY++ ++ + G++ A GF ++V TY +LI+G KA
Sbjct: 538 K-EGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 596
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ M GI P+ V++ L R L S +
Sbjct: 597 QVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFR 639
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 38/222 (17%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M +GI+PD N+LI A + V TA+ + E M SS P+ T+ + GF
Sbjct: 182 VYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM-SSHAVAPDETTFTTLMQGF 240
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A ++ V+T +MM G P+
Sbjct: 241 IEEGSIEA-------------ALRVKT----------------------KMMETGCSPTR 265
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ ++ G C +++ +++ + G++ ++ V C C+ G V + ++
Sbjct: 266 VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDL 325
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ + P+V ++ +I + + LD+ + V +M +G
Sbjct: 326 MLQEGHDPDVFT--YNTVINCLSKNGELDEAKGIVNQMVDRG 365
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V T M G P N LI G V AL + ++ + ++P+ TY+ F+
Sbjct: 249 ALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIA-DGFEPDQVTYNTFV 307
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+V K + G +V TY ++I+ K + D +M+ G +
Sbjct: 308 HCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL 367
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P ++ LC++ +L+ + L G + L+ C++G
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG 419
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M +G++P + +NS++ GD+ A + E M ++ ++ +
Sbjct: 522 KAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETM-TANGFEIDV 580
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y +I + + + E
Sbjct: 581 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFRE 640
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V GLC R +K FL+
Sbjct: 641 MTEVGEPPDALTYKIVFRGLC--RGGGPIKEAFDFLV 675
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 55/338 (16%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK-PDSAVFNSL 149
+L+ D MLK N +C+ + I K ++ A V M+ I P+ +++L
Sbjct: 176 FLLDLNKDHMLKPN-TCI--FNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTL 232
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ SG + A+ LFE MVS ++ P++ TY+ I+GFS G VD K + G
Sbjct: 233 MDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNG 292
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
S NV Y +L+ G K + +EEM G+ K D V
Sbjct: 293 CSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGL------------------KQDTV- 333
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDE----LEEQLETLTKCN-QSPEVLLHFF 324
G+ I L+ +C GR+DE LEE ET K + + VLL F
Sbjct: 334 ---------GYTI-------LINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGF 377
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHI 383
G R ++ + R+ +G+ A +V+ S + D+ L+L +
Sbjct: 378 CG-------EGRTEEALGMLNRLSSEGIYLNKA-SYRIVLNSLCQKGDLDKALELLGLTL 429
Query: 384 KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
+ AT + L+ G +AG++ D+V+ AE
Sbjct: 430 SRGFVPHHATSNELLVGLCKAGMAD--DAVVALYGLAE 465
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 40/237 (16%)
Query: 118 SGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
SG+++ A+ +F M ++ I PD+ +N LI C G V A + E M S
Sbjct: 239 SGRLKE---AIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFM-KSNGCS 294
Query: 177 PNSKTYDAFISGFSSLGNVD-AMNKWYAANI------AAGFSVNVQTY------------ 217
PN Y A +SGF G ++ AM+ + I G+++ + +
Sbjct: 295 PNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMAL 354
Query: 218 -ESLIHGSLKA---------RDFDSVDRFYEEMMSLGIIPSIPI-LEK-----VLEGLCA 261
E + KA R F R E + L + S I L K VL LC
Sbjct: 355 LEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQ 414
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ LD+ L L G+ + + +L+ C+ G D+ L L + PE
Sbjct: 415 KGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPE 471
>gi|357491817|ref|XP_003616196.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517531|gb|AES99154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 981
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 20/268 (7%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ +I GK + A+ +F M+ QGI P + +NS+I L D+V +
Sbjct: 502 EFNVMIKAYGKANHYDKAVLLFEEMKYQGISPADSTYNSII-QMLSGADLVDQARDLTVE 560
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ +KP+ +T+ A I ++ LG + Y I+AG N Y +LI+G +
Sbjct: 561 MQEMGFKPHCQTFSAVIGCYARLGQLSDAVIVYQEMISAGVKPNETVYGALINGFAEHGR 620
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +++ M G+ ++ +L +++ L VKS K + ++
Sbjct: 621 LDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQMQNMEGVLDLAARSS 680
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++ + ELG V E + E + Q+ S I +Y D +G
Sbjct: 681 MITAFAELGLVSEAKLTFEKFKETGQADST-----SYGIMMYVYKD-----------IGM 724
Query: 350 QGLSFKSAEDVEMVICSYFR-CAAYDRL 376
+ K AE EM I R C +Y+R+
Sbjct: 725 IDEAIKIAE--EMKISGLLRDCVSYNRV 750
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI L GK + A VF M G+ D+ FN+LI G+++ A SL + M
Sbjct: 296 YNTLIDLYGKAGRLKDAADVFADMMKSGVAMDTCTFNTLIFISGSHGNLLEAESLLDKM- 354
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
N++TY+ F+S +++ G++DA +Y G + TY +L+
Sbjct: 355 EERGISSNTRTYNIFLSLYATAGSIDAALSYYRRIREVGLFPDTVTYRALLGALCTENMV 414
Query: 231 DSVDRFYEEM 240
+V+ +EM
Sbjct: 415 QAVEGVIDEM 424
>gi|226493605|ref|NP_001151863.1| rf1 protein [Zea mays]
gi|195650381|gb|ACG44658.1| rf1 protein [Zea mays]
Length = 467
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 10/224 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + ++ A H+F M +GI P F +L+ A +G + A + E+MV
Sbjct: 159 YNILMRAAAASGSLGHARHLFDEMLRRGIAPTVVTFGTLVAALCAAGQLEDAFEVKEVMV 218
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVD---AMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
PN Y + I G G+VD A+ + A A ++ Y +L+ +
Sbjct: 219 RQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKEEMAGK--ADLVLDSAVYATLVRALFQV 276
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF--LKFLLGGGWKINEN 285
+V EEM G++ + +L G C K D +F L + G K +
Sbjct: 277 GRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEK-DLAAAFAVLDDMQKNGCKADAV 335
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGI 327
LV C+LGR + E +E + + P+V+ + F G+
Sbjct: 336 SYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGM 379
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF--------SSLG 193
DSAV+ +L+ A G + L E M S ++ Y+A ++GF ++
Sbjct: 262 DSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVA-DTVVYNAMLAGFCEDEKDLAAAFA 320
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D M K G + +Y +L+ G K + E+M G P +
Sbjct: 321 VLDDMQK-------NGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYR 373
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+ +G+CA ++ L ++ G+ + + AQK V+ + G V LE L L K
Sbjct: 374 MLFDGMCAAKEFLEANQVLDEMVFKGFAPSNDGAQKFVQGIEKEGDVVLLESVLCRLAKV 433
Query: 314 N 314
N
Sbjct: 434 N 434
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + A+ + M G++P+ FN+LI + + A +F M
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEM- 334
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY+ I+G+S G+ + ++Y + G ++ TY +LI G K
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT 394
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+F +E+ ++P+ ++ G C R+ DR K ++ G NE L
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454
Query: 291 VKCYCELGRVDELEEQLETLTK 312
V +C D + L + +
Sbjct: 455 VSAFCRNEDFDGASQVLREMVR 476
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+ + + ME G + +N+LI G + +AL L +M S +P
Sbjct: 251 SGKLDK---GIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSG-LQP 306
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T++ I GF + +K + A + N TY +LI+G + D + RFY
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
E+M+ GI I ++ GLC + K + F+K L
Sbjct: 367 EDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKEL 404
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A + M GI+ D +N+LI LC + F +
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFG-LCKQAKTRKAAQFVKEL 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I G N D + Y + I +G N QT+ L+ + DF
Sbjct: 405 DKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDF 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
D + EM+ I + +V GL + K VK L+ + G
Sbjct: 465 DGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEG 511
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 3/201 (1%)
Query: 148 SLICACLCSGDVVTALSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
S++ L +G V +F+ ++ S E + +D+ F+ L +
Sbjct: 136 SILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMK 195
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF V++ + + L D RFY EM I P+ L V+ G C KLD
Sbjct: 196 DYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLD 255
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
+ L+ + G++ + L+ +CE G + + + K P V+ F+
Sbjct: 256 KGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVT--FNT 313
Query: 327 IIRLYALSDRLDDVEYSVGRM 347
+I + + +L + G M
Sbjct: 314 LIHGFCRAMKLQEASKVFGEM 334
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 134/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLSKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ V M +
Sbjct: 395 RMKLEERCVPNAVTYNCLIDGYCRAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ V E D +G + Y LI+ GK ++ + M G+ P + +
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I A G++ AL LF+ M + PN+ Y+ I+ FS LGN
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK 681
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
NV+TY +L + +++ + +EM+ P+ +E ++E L +L ++
Sbjct: 682 MVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKL 741
Query: 269 KSFLK 273
+ F++
Sbjct: 742 RKFMQ 746
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 5/271 (1%)
Query: 53 SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEY 111
S + + + +D+F + ++ + LI SL S + + L KM K G + +
Sbjct: 103 STVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSV---LSKMFKLGIQPDSVTF 159
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI + A+ +F M + P++ F L+ G V A +FE M +
Sbjct: 160 TTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETM-T 218
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ +PN TY+A ++G+ ++ +K + + G + +V +Y LI+G K+R D
Sbjct: 219 EKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRID 278
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+M +IP+ +++GLC L + K + G N L+
Sbjct: 279 EAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILL 338
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G ++E + L ++ + P+++L+
Sbjct: 339 DGLCKHGHLEEALKLLTSMQERKLEPDIVLY 369
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + TSM+ + ++PD ++N LI +G + A LF + ++ +P+ +TY+ I
Sbjct: 350 ALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFAN-GIRPSVRTYNIMI 408
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
G G D K + GF + +Y +I G L+ +D + + +EM+
Sbjct: 409 KGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMV 463
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 34/207 (16%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV------------------- 170
VF +M +G++P+ +N+L+ ++ A +FEIMV
Sbjct: 213 VFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYC 272
Query: 171 ---------------SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S +E PN+ TY+ + G ++ + + ++G N++
Sbjct: 273 KSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLR 332
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY L+ G K + + M + P I + +++G+ KL+ K L
Sbjct: 333 TYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKL 392
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
G + + ++K + G DE
Sbjct: 393 FANGIRPSVRTYNIMIKGLLKEGLSDE 419
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 152/363 (41%), Gaps = 28/363 (7%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV----QNVPFA 127
+++ +LI++L + K L ++ + G + L Y +I L GK +N+
Sbjct: 118 YAYTSLISALSRNRKFKEALGFFEQMKE--AGPQPSLVTYNVIIDLYGKKGRSWENI--- 172
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ +F M+AQGI+PD +N+ I AC A LF M SS P+ TY+A +
Sbjct: 173 LELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSS-NCTPDRVTYNALLD 231
Query: 188 GFSSLGNVDAMNKWY--AANI-----AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+ G WY AAN+ +AG N+ TY L+ +A ++ + M
Sbjct: 232 VYGKAG-------WYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSM 284
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+S GI P + +L K+++ + N L+ + +
Sbjct: 285 VSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNF 344
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
E+ E + C P+++ ++ ++ + + +V M K G A
Sbjct: 345 SEMMVIFEDMQACGVEPDIVT--WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKA-TF 401
Query: 361 EMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
++I +Y RC + D+ L ++ ++ AT++ L+A R G + +++E+
Sbjct: 402 NILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNR 461
Query: 420 AEY 422
+ Y
Sbjct: 462 SSY 464
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A F +M G D++ FN++I G + A F ++ S+ +P+ TY+ +
Sbjct: 522 AEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTG-LEPDVVTYNCLM 580
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ G +AAG + ++ +Y ++I K S R + EM+S GI
Sbjct: 581 GMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQ 640
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + S +K + G K +E + LV YC++G+ +E+E
Sbjct: 641 PDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERI 700
Query: 307 LE 308
L+
Sbjct: 701 LK 702
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + + ME G+ PD FN+L+ G + A LF M P + TY+ I
Sbjct: 292 AMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEM-KGMSLSPTTVTYNILI 350
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+S GN + N+ + ++ TY +LI G K E+ G++
Sbjct: 351 NGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLV 410
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ ++ G C +++ +R K ++ + + + L+ +CE D +
Sbjct: 411 PNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQL 470
Query: 307 LETLTKCNQSPEV 319
LE + +++P+V
Sbjct: 471 LEEMLNRHKAPDV 483
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 6/200 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M G P+ A +N+LI G + +A+ L +M P+ T++ ++GF
Sbjct: 260 VFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVM-EKNGVPPDVVTFNTLVNGF 318
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G + +K + S TY LI+G KA + + +R +EEM + I
Sbjct: 319 CKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMSRFQVKADI 378
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC---ELGRVDELEEQ 306
++ GLC K + ++ L G N + L+ C + R ++ +
Sbjct: 379 LTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQSERAFQIYKS 438
Query: 307 L--ETLTKCNQSPEVLLHFF 324
+ + T C+Q+ +LL F
Sbjct: 439 MIKSSFTPCDQTFRMLLSTF 458
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 3/156 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N +F M +K D +N+LI G A L +
Sbjct: 346 YNILINGYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVREL- 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ T+ A I G + + Y + I + F+ QT+ L+ + D+
Sbjct: 405 DEKGLVPNASTFSALIYGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDY 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL--CARRK 264
D + EEM++ P + L ++ GL C + K
Sbjct: 465 DGAVQLLEEMLNRHKAPDVNNLYELCAGLGQCGKVK 500
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + GK+ A+ V M+ QGI+P + +N+L+ AC SG TAL L+E M
Sbjct: 209 YNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMR 268
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ + N+ +Y+A IS S G++ + Y + G +V TY SLI K+ ++
Sbjct: 269 AA-GHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEW 327
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
RF++E + P++ ++ + ++ + + +
Sbjct: 328 QLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELM 372
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
A N++ S++ALI S S + Q++ +R + +G E + Y+ LI+ K
Sbjct: 272 HALNTT--SYNALI-SAHSKAGDLPQVLDTYR-QMVQQGCERSVITYSSLISACEKSGEW 327
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ F +P+ FNSLI AC A LFE+M + P+ TY A
Sbjct: 328 QLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELM-QQQGCTPDVVTYTA 386
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
IS + G + + A A G + Y ++I
Sbjct: 387 LISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAII 423
>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 700
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 137/340 (40%), Gaps = 29/340 (8%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS----LQSSSPKKA 89
+ S+ S NP R+ Q+ +S + NS + AL+ Q P +
Sbjct: 112 AKSLDSCNPTQQRVSQILQVLGDKVFESDAVVILNSMVNPYTALLAVNYYFTQKIKPSRH 171
Query: 90 QLVLE-----WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV---------FTSME 135
++ +R + +G E DE ++ K N F+ V F M
Sbjct: 172 VVLYNVTLKLFRAVRDFEGEEKLFDE---MLQRGVKPNNFTFSTMVNCANKPVELFEKMS 228
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
G +PD ++++ A S +V A+SL++ ++ E++ ++ T+ A I +S GN
Sbjct: 229 GFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIA-EKWCLDAATFSALIKMYSMAGNY 287
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K Y G NV TY +L+ LKA+ Y+EM S G+ P +
Sbjct: 288 DKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDFITYACL 347
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE---QLETLTK 312
LE + K + G G + ++ KL+ ++G D E ++++
Sbjct: 348 LEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEMKSSGT 407
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C FS +I +Y+ S ++ + E + M + G
Sbjct: 408 CQPDSWT----FSSMITMYSRSGKVSEAEGMLNEMIQSGF 443
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YACL+ + A+ V+ M+ G+ + ++N L+ C G A +F M
Sbjct: 344 YACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEMK 403
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS +P+S T+ + I+ +S G V I +GF + SL+H KA+
Sbjct: 404 SSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRT 463
Query: 231 DSVDRFYEEMMSLGIIPS 248
D V + +++++ LGI+P+
Sbjct: 464 DDVVKVFKQLLDLGIVPN 481
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 4/276 (1%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W K ++ G L ++ LI K+ ++ A + M +G KP+ +LI
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V S+ YKPN TY I+G+ ++ G N
Sbjct: 344 CKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPN 403
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY LI G KA +F + M G P+I +++GLC + + L+
Sbjct: 404 TNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLR 463
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333
L G ++ L+ +C + + K P+ +H ++ +I +
Sbjct: 464 RGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPD--MHTYNVLIATFCR 521
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
++++ E GL + E +IC Y R
Sbjct: 522 QKKVEESEKLFEEAVGLGL-LPTKETYTSMICGYCR 556
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C+I K + + A + M+ QG+ P++ + LI +G+ A L ++M
Sbjct: 372 YTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLM- 430
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I G G K + +G + TY LI + D
Sbjct: 431 GKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDN 490
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ M +G+ P + ++ C ++K++ + + +G G + +
Sbjct: 491 KQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSM 550
Query: 291 VKCYCELGRV 300
+ YC G +
Sbjct: 551 ICGYCRDGHI 560
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 1/161 (0%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ D + LI D AL++F M +P+ TY+ I+ F V+
Sbjct: 469 GLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVG-LQPDMHTYNVLIATFCRQKKVEE 527
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
K + + G +TY S+I G + S +F+ +M G P ++
Sbjct: 528 SEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALIS 587
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
GLC KLD + ++ G E L YC+ G
Sbjct: 588 GLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQG 628
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 2/182 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V +A VF M + + PDS + ++ G + + M+ Y ++ T
Sbjct: 209 VDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIE-RGYAVDNATCT 267
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
IS FS G V+ ++ + G + N+ + SLI+G K EEM+
Sbjct: 268 LMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRK 327
Query: 244 GIIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G P++ +++GLC + ++ + FLK + +K N ++ YC+ +++
Sbjct: 328 GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNR 387
Query: 303 LE 304
E
Sbjct: 388 AE 389
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 11/232 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
++ + ++ LI+ + K L + R+ K+ G + + Y LIA + + V
Sbjct: 469 GLHADKVTYTILISEFCRQTDNKQALAIFSRMFKV--GLQPDMHTYNVLIATFCRQKKVE 526
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYD 183
+ +F G+ P + S+IC G + +A+ F M +Y KP+S TY
Sbjct: 527 ESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKM---RDYGCKPDSITYG 583
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A ISG + +D + Y I G S T +L + K D + E +
Sbjct: 584 ALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKK 643
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVKCY 294
I ++ L + LC+ +K+ F LL ++ +A CY
Sbjct: 644 LWIRTVNTL---IRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAAFTTACY 692
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 1/184 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ + I P+ FN LI A G + A L +M+ + KP+ TY++ I
Sbjct: 251 AFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKAC-IKPDVFTYNSLI 309
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ + V + + G + +VQ Y ++I+G K + D +EEM +I
Sbjct: 310 DGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMI 369
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++GLC L+R + K + G + + L+ C+ GR+++ +E
Sbjct: 370 PDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEI 429
Query: 307 LETL 310
+ L
Sbjct: 430 FQRL 433
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 3/214 (1%)
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
IKPD +NSLI +V A +F M + P+ + Y I+G VD
Sbjct: 298 IKPDVFTYNSLIDGYFLVDEVKHAKYVFYSM-AQRGVTPDVQCYTNMINGLCKTKMVDEA 356
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ ++ TY SLI G K + + M GI P + +L+G
Sbjct: 357 MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDG 416
Query: 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
LC +L+ K + LL G+ +N + L+ C+ G DE + + P+
Sbjct: 417 LCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPD 476
Query: 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ F IIR D D E + M +GL
Sbjct: 477 AVT--FDIIIRALFEKDENDKAEKILREMIARGL 508
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 3/199 (1%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSK 180
++ P + +F E GI PD + LI C C +T A S+F ++ + PN+
Sbjct: 71 KHYPTVISLFKQFEPNGITPDLCTLSILI-NCFCHQAHITLAFSVFANILK-RGFHPNAI 128
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
T + I G G + ++ +A GF ++ +Y +LI+G K + +V R ++
Sbjct: 129 TLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKL 188
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ P + + ++ LC + L ++ G + L+ +C +G +
Sbjct: 189 EGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHL 248
Query: 301 DELEEQLETLTKCNQSPEV 319
E L + N +P V
Sbjct: 249 KEAFSLLNEMKLKNINPNV 267
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++FT M+ +GI PD +NS+I SG A L + M+ + P+ TY+A I
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G + Y + G N TY S+I G K D+ + + M + G
Sbjct: 333 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCS 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +++G C +++D L + G N L+ +C +G ++ +
Sbjct: 393 PDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL 452
Query: 307 LETLTKCNQSPEVL 320
+ + P+++
Sbjct: 453 SQQMISSGVCPDIV 466
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
M + M +G+ ++ +N+LI GD+ AL L + M+SS P+ T + +
Sbjct: 414 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-VCPDIVTCNTLL 472
Query: 187 SGFSSLGNV-DAMNKWYAANIAA----------GFSVNVQTYESLIHGSLKARDFDSVDR 235
G G + DA+ + A + G +V TY LI G + F +
Sbjct: 473 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 532
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
YEEM GI+P +++GLC + +LD + + N L+ YC
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYC 592
Query: 296 ELGRVDE 302
+ GRVD+
Sbjct: 593 KAGRVDD 599
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 3/218 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSME-AQGIKPDSAVFNSLICACL 154
LD+M++ G + Y ++ K + A+++ ME I P+ +++++I +
Sbjct: 207 LDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLC 266
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G A +LF M + P+ TY++ I GF S G + + S +V
Sbjct: 267 KDGRHSDAQNLFTEMQEKGIF-PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY +LI+ +K F Y+EM+ GIIP+ +++G C + +LD +
Sbjct: 326 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 385
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ G + L+ YC R+D+ E L + +
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 423
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M +GI PD+ ++S+I LC + + + + S+ + PN T++ I
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 588
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ G VD + + G + Y +LI+G K + + ++EM+S G+
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 648
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P + +L G ++ +L+R + L+ L
Sbjct: 649 PDTITIRNMLTGFWSKEELERAVAMLEDL 677
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 4/201 (1%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTY 182
+PFA+ F + G+ PD F +L+ LC D V+ AL F M + +PN T+
Sbjct: 130 LPFALSTFGKITKLGLHPDVVTFTTLLHG-LCVEDRVSEALDFFHQMFET-TCRPNVVTF 187
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
++G G + + G TY +++ G K D S +M
Sbjct: 188 TTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEE 247
Query: 243 LG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ IIP++ I +++ LC + ++ + G + ++ +C GR
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS 307
Query: 302 ELEEQLETLTKCNQSPEVLLH 322
+ E+ L+ + + SP+V+ +
Sbjct: 308 DAEQLLQEMLERKISPDVVTY 328
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 21/217 (9%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF S+ G++P FN+L+ + GD+ L M +S +P+ TY I
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHAS-GVQPDVYTYSVLI 213
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G ++ N + + G N T+ +LI G K DS Y++M+S +
Sbjct: 214 NGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFL 273
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC + L + + L + G K ++ L+ C+ G +D E
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFEL 333
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
ET+ K S RLDDV Y+
Sbjct: 334 RETMVK--------------------ESIRLDDVAYT 350
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 1/186 (0%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+M A G++PD ++ LI + A LF M+ + PN T+ I G
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD-KGLVPNGVTFTTLIDGHCKN 254
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G VD+ + Y ++ F ++ TY +LI+G K D +EM G+ P
Sbjct: 255 GKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITY 314
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++G C LD + ++ ++++ L+ C+ GR + E+ L +
Sbjct: 315 TTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLS 374
Query: 313 CNQSPE 318
P+
Sbjct: 375 VGLKPD 380
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 84/179 (46%), Gaps = 2/179 (1%)
Query: 141 PDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
P S F +++ C G++ A S+F+ ++ +P+ +++ ++G+ LG++D
Sbjct: 133 PASLYFFNILMHRFCKEGEIWIAQSVFD-SITKWGLRPSVVSFNTLMNGYIRLGDLDQGF 191
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
K A A+G +V TY LI+G K + + + EM+ G++P+ +++G
Sbjct: 192 KLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGH 251
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
C K+D K +L + + L+ C+ G + + ++ L+ + P+
Sbjct: 252 CKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPD 310
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + A +F M +G+ P+ F +LI +G V +A+ ++ M+
Sbjct: 209 YSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQML 268
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + + P+ TY+ I G G++ G + TY +LI G+ K D
Sbjct: 269 S-QCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDL 327
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS E M+ I ++ GLC + + L+ +L G K + +
Sbjct: 328 DSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMI 387
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ +C+ V + L+ + + P V+
Sbjct: 388 INEFCKKEDVKTAAKLLKEMQRQGHVPCVV 417
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 5/203 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ LI L + S +A + LDK L N + LI K V AM
Sbjct: 207 YTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGV---TFTTLIDGHCKNGKVDSAMET 263
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M +Q PD +N+LI GD+ A L + M + KP+ TY I G
Sbjct: 264 YKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEM-RMKGLKPDKITYTTLIDGNC 322
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++D+ + + ++ Y +LI G + ++ EM+S+G+ P
Sbjct: 323 KEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNG 382
Query: 251 ILEKVLEGLCARRKLDRVKSFLK 273
++ C + + LK
Sbjct: 383 TYTMIINEFCKKEDVKTAAKLLK 405
>gi|242090501|ref|XP_002441083.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
gi|241946368|gb|EES19513.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
Length = 506
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 144/318 (45%), Gaps = 14/318 (4%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L E+A I+L+ + ++ A +F A P+ ++N+L+ A + +G + + + F
Sbjct: 148 LGEFALAISLASRARDHDAAAALFADGTATH-SPNQGLYNALMAAYMHNGLLDSCIETFH 206
Query: 168 IMVSSEEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ PN +Y+ I+ + VD M + A+G + TY ++I G L
Sbjct: 207 ALERDPRCGPPNVDSYNILIALYGRSLLVDHMEATLQSLDASGQPRTIGTYNAIISGYLT 266
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A +D ++ + EM+S + P +L G ++ +++ + K +
Sbjct: 267 AWMWDKMEAVFHEMVSGHVAPDATTHLLMLRGYAHAGRIYKMEQAYEHACKLVRKFDIVH 326
Query: 287 AQKLVKCYCE---LGRVDELEEQLETLTKCNQSP--EVLLHFFSGIIRLYALSDRLDDVE 341
+ ++ YC+ +GR+ ++E+ L+ L + P VLL I++YA +D +E
Sbjct: 327 IRAMLCAYCKFYHVGRIQKIEDLLKQLGPDDYRPWLNVLL------IKVYAQEGLVDGME 380
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLRRATYDFLVAG 400
+ + + + + +ICSYFR A D+L F+ + +KL R+ Y +
Sbjct: 381 LHISEALQHNTIVNTIKVMRAIICSYFRYDAVDKLVHFVRLAEEAGWKLCRSLYHCKMVM 440
Query: 401 YRRAGLSGKLDSVINEMK 418
Y ++ V++EM+
Sbjct: 441 YGNHHRLEEMHGVLDEME 458
>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 37 VSSSNPLISRLL---QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQL-V 92
V S P I R+L QV V QI +L + W +L+ L + S L V
Sbjct: 47 VRPSVPSILRILNASQVSVVQILESLSP------SMKLTDWLSLLEGLANQSKWALTLEV 100
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
W + ++ YA LI +SGK +++ A+ +F ++ G +PDS+++N+LI A
Sbjct: 101 FRWMQRQKWYNHDDGF--YAKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITA 158
Query: 153 CLCSGD----VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
L S D A+ LFE M + +PN TY+ + + LG+V +++++ AA
Sbjct: 159 YLHSRDKGRGFEAAMKLFEKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEAA 218
Query: 209 GFSVNVQTYESLIHGSLKARDF 230
++ TY +I +A D+
Sbjct: 219 KIYPDLVTYNGVIGAYAEAGDY 240
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV---TALSLFEIMVSS-----EEY 175
V M +F + IKPD+ N+LI A D V +SLF ++ S ++
Sbjct: 241 VQMEMTLFVMRIQKHIKPDNVTSNTLIGAYGRGKDFVKMEQVVSLFTAVLKSMTGSKSKH 300
Query: 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
+P+ KTY+ +S ++ +++ M ++ A F N +++E L++G DF+ +
Sbjct: 301 RPDLKTYNLLMSSYARAQDMENMLWSFSRMEEASFKPNFRSFEILMYGFGGVGDFEKMRE 360
Query: 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV--KC 293
+ +M+ I P L ++ C ++ W+I+ + L+ +
Sbjct: 361 CFHQMLEASIKPQTSTLNTMISAYCKHNFF--EEAEELLKEALEWQIHPRTSSYLIILRA 418
Query: 294 YCELGRVDELEEQLETLTKCNQSP 317
Y R++++E +E + + +P
Sbjct: 419 YARDNRLNDMERLIERMRIADVAP 442
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 16/287 (5%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC---LDEYACLIALSGKVQNVPFAMHV 130
++ALIT+ S K +L + +K C L Y L+ S ++ +V
Sbjct: 152 YNALITAYLHSRDKGRGFEAAMKLFEKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRF 211
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F MEA I PD +N +I A +GD V ++LF +M + KP++ T + I +
Sbjct: 212 FKEMEAAKIYPDLVTYNGVIGAYAEAGDYVQMEMTLF-VMRIQKHIKPDNVTSNTLIGAY 270
Query: 190 SSLGNVDAMNKWYAANIAAGFSV---------NVQTYESLIHGSLKARDFDSVDRFYEEM 240
+ M + + A S+ +++TY L+ +A+D +++ + M
Sbjct: 271 GRGKDFVKMEQVVSLFTAVLKSMTGSKSKHRPDLKTYNLLMSSYARAQDMENMLWSFSRM 330
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
P+ E ++ G ++++ +L K + ++ YC+
Sbjct: 331 EEASFKPNFRSFEILMYGFGGVGDFEKMRECFHQMLEASIKPQTSTLNTMISAYCKHNFF 390
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+E EE L+ + P + I+R YA +RL+D+E + RM
Sbjct: 391 EEAEELLKEALEWQIHPRTSSYLI--ILRAYARDNRLNDMERLIERM 435
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 137/343 (39%), Gaps = 40/343 (11%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
F S ++ALI + + ++ ++ + M G + + Y+C+I NV
Sbjct: 240 FKPSVPVYNALIDGMCKEG--RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVEL 297
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G + F LI C G + AL L+++M+ + +PN Y+ I
Sbjct: 298 AFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ-DGCEPNVVAYNTLI 356
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S G+++ + +G NV TY LI G K+ D + M+S G
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR 416
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++ LC D+ S ++ + G N +K C GRV+ +
Sbjct: 417 PNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL 476
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE + P + + ++ LD ++ RM K +F +++E
Sbjct: 477 LERMQGHGCLPNITTY-----------NELLD----ALFRMNKYEEAFGLFQEIE----- 516
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
+ + TY+ ++ G+ RAG+ G+
Sbjct: 517 -----------------ARNLQPNLVTYNTVLYGFSRAGMMGE 542
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A +F M +G PD+ + +++ + +G + A L
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL----- 236
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +KP+ Y+A I G G ++ K + G NV +Y +I+ + +
Sbjct: 237 -AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +M G +I +++G R KL K ++ G + N L
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C G ++E + + + + P V +S +I +A S L + RM
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTT--YSILIDGFAKSGDLVGASETWNRMISH 413
Query: 351 G 351
G
Sbjct: 414 G 414
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 117/300 (39%), Gaps = 17/300 (5%)
Query: 12 KSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVP--VSQIKTTLDSVDIFAFNS 69
K R LLM ++ + N+N ++ +P +LLQ + ++KT + + F S
Sbjct: 4 KEGRSLLMKIQKPLIPFVLNSNPI-INPRDPNKQQLLQESDVLKRLKTDRNLSSVLGFFS 62
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKM--------LKGNESCLDEYACLIALSGKV 121
+ + +A + + +L E +D + + G C D + C+I +V
Sbjct: 63 AIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRV 122
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+ A+ +F + G KP ++N L+ A L L+ M + PN T
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNM-KKDGLIPNVFT 181
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ + VDA +K + G + TY +++ KA D
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
PS+P+ +++G+C +++ L ++ G N ++ C G V+
Sbjct: 242 -----PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 8/290 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I G+ + ++ M+ GI +F +I G AL +F +
Sbjct: 77 YRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF-YRI 135
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP + Y+ + S +N Y G NV TY L+ K
Sbjct: 136 GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRV 195
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ + + EM + G P ++ LC K+D + L G +K + + L
Sbjct: 196 DAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVPVYNAL 250
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GR++ + L + P V+ +S II +S ++ +M +
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVV--SYSCIINSLCVSGNVELAFALFAQMFLR 308
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
G ++ + R Y+ LDL+ I+ + Y+ L+ G
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 4/214 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y+ LI K ++ A + M + G +P+ + ++ LC + A SL E M
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMV-DVLCKNSMFDQANSLVEKM 445
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ E PN+ T++ FI G G V+ K G N+ TY L+ +
Sbjct: 446 -TLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNK 504
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++ ++E+ + + P++ VL G + L G +
Sbjct: 505 YEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLH 322
++ YC+ G+V + +E ++ + P+++ +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITY 598
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F +G PDS +N++I A G V A L E + S +E+ P+ TY + I
Sbjct: 543 ALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLI 602
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
G + N++ + I G N T+ +L+
Sbjct: 603 WGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A +F +EA+ ++P+ +N+++ +G + AL LF + +V P+S TY+
Sbjct: 508 AFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT--APDSITYNTM 565
Query: 186 ISGFSSLGNV----------DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
I + G V +M +W+ ++ TY SLI G+ + +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHP---------DIITYTSLIWGACNWMNIEEAMA 616
Query: 236 FYEEMMSLGIIPS 248
F ++ ++ GI P+
Sbjct: 617 FLDKAINQGICPN 629
>gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F+ M GI+PD+ ++N+++ L + AL+L+ M+ S +PN TY+ I
Sbjct: 103 AIESFSRMREFGIEPDAHMYNTILRDVLNEKLLELALALYTTMLKSN-VEPNFYTYNMLI 161
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G V + G V + S+++G +A + D + + +M
Sbjct: 162 DGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDMKETSYP 221
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + VL G C +L+ SF+ + G+ +N N L+ + + R E
Sbjct: 222 PDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFKARRYREAHAC 281
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ K P+V+L ++ +IR + R+ + + M + GL+
Sbjct: 282 YTKMFKEGIVPDVVL--YAIMIRGLSKEGRVGEAAKMLEEMTQIGLT 326
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)
Query: 100 MLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158
MLK N E Y LI K V A + M+ GI P S++ C + +
Sbjct: 145 MLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANN 204
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V A LF M + Y P+ + + ++GF +G ++ + GFS+N +Y
Sbjct: 205 VDEAHKLFNDMKETS-YPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYA 263
Query: 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278
SLI+ KAR + Y +M GI+P + + ++ GL ++ L+ +
Sbjct: 264 SLINAFFKARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQI 323
Query: 279 GWKINENMAQKLVKCYCE---LGRVDELEEQLETLTKCNQS 316
G + +++ C+ L R L ++ C +
Sbjct: 324 GLTPDSYCYNAVIQGLCDVDLLNRAQSLSLEISEHNVCTHT 364
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 18/205 (8%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
+ YA LI K + A +T M +GI PD ++ +I G V A + E
Sbjct: 260 NSYASLINAFFKARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEE 319
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M + P+S Y+A I G L +VD +N+ + ++ NV T+ LI K
Sbjct: 320 M-TQIGLTPDSYCYNAVIQG---LCDVDLLNRAQSLSLEIS-EHNVCTHTILICEMCKRG 374
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-FLKFLLGGGWKINENMA 287
+ +M LG PS+ ++ GLC + L++ K+ F K +G ++ +++
Sbjct: 375 MVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKAKNLEKAKNLFCKLEVGRRHSLHLSLS 434
Query: 288 Q------------KLVKCYCELGRV 300
Q K K CE G++
Sbjct: 435 QGSGQVSDSARLLKKAKEMCEAGQI 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 23/235 (9%)
Query: 101 LKGNESCLDEY------ACLIALSG------KVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
+KG + LDE C+++ + + NV A +F M+ PD N
Sbjct: 170 VKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDMKETSYPPDMISCNV 229
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
++ G + ALS F M+ ++ + N +Y + I+ F + Y
Sbjct: 230 VLNGFCKMGRLEEALS-FVWMIKNDGFSLNRNSYASLINAFFKARRYREAHACYTKMFKE 288
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G +V Y +I G K + EEM +G+ P V++GLC L+R
Sbjct: 289 GIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYCYNAVIQGLCDVDLLNRA 348
Query: 269 KSFLKFLLGGGWKINEN--MAQKLVKC-YCELGRVDELEEQLETLTKCNQSPEVL 320
+S +I+E+ ++ C C+ G V E +E + K P V+
Sbjct: 349 QSL-------SLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPSVV 396
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 34 STSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA-FNSSQFSWDALITSL-QSSSPKKAQL 91
S V + N LIS V + T L + IF N + ++++ L+ + K+A+
Sbjct: 244 SPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKN 303
Query: 92 VLEWRLDKMLKGN----ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
VL + + +K + S +D Y CL V+ V A H+F ++ +G+ P+ ++
Sbjct: 304 VLAMMMKQGIKPDVFTYNSLMDRY-CL------VKEVNKAKHIFNTISQRGVNPNIHSYS 356
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+I V A++LF+ M P+ TY++ I G LG + K
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEM-HCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHD 415
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY S++ K D +M GI P I +++GLC +L+
Sbjct: 416 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLED 475
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + LL G+ ++ N+ +++ +C G DE
Sbjct: 476 ARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDE 510
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 5/227 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI KV A+ + ++ + ++P+ ++N++I + +C +V A L+ M
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDS-MCKVKLVNEAFDLYSEM 238
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
VS + P+ TY+A ISGF +G + + I + NV T+ L+ G K R
Sbjct: 239 VS-KGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERR 297
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
MM GI P + +++ C +++++ K + G N +
Sbjct: 298 LKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSI 357
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALS 334
++ +C++ +VDE + + N P+V+ + G+ +L +S
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKIS 404
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + +A+ + M +G+ D +NS++ A + V A++L M
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM- 448
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P+ TY + G G ++ + + G+ ++V Y ++I G F
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
D +M G IP+ E ++ L + + D+ + L+ ++ G
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)
Query: 133 SMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
ME GI D + + LI C + ++ L +I+ Y+PN T I G
Sbjct: 97 QMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKIL--KMGYEPNVITLTTLIKGLCL 154
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G + +++ +A GF +N +Y +LI+G K + + + + P++ +
Sbjct: 155 KGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVM 214
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++ +C + ++ ++ G + L+ +C +G++ + + +
Sbjct: 215 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
N +P V + F+ ++ + RL + + + M KQG+
Sbjct: 275 FENINPNV--YTFNILVDGFCKERRLKEAKNVLAMMMKQGI 313
>gi|395323299|gb|EJF55778.1| hypothetical protein DICSQDRAFT_141808 [Dichomitus squalens LYAD-421
SS1]
Length = 1213
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 104/247 (42%), Gaps = 47/247 (19%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I+ K + +A+ +F M+AQ I+P S + ++I AC GD +A LF+ M
Sbjct: 868 YNTIISKLAKARKADYALQLFQDMKAQNIQPTSVTYGAVIAACCRVGDAASAELLFQEMT 927
Query: 171 SSEEYKPNSKTYDAFISGFS-SLGNVDAMNKWYAANIAAGFSVNVQTYESLI--HGSLKA 227
S +KP Y+ + ++ + + + +Y +AA TY+ LI +GS++
Sbjct: 928 SEPTFKPRVPPYNTMMQLYTHTKPDRSRVLHYYNELLAANVQPTAHTYKLLIDAYGSIEP 987
Query: 228 RDFDSVDRFYEEMM----------------------------SLGI-------------- 245
D ++++ +E+++ +L +
Sbjct: 988 VDDSAMEKVFEQLVADRSVSVQGTHWAALINAWGCVQKDLDKALAVFDSIAKHPTTKQNS 1047
Query: 246 --IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
+P + E ++ L R++D V +L+ L G + +A L+K Y + ++
Sbjct: 1048 SPMPDAVVYEALINTLVTVRRMDLVPPYLERLQSSGVHMTAYIANLLIKGYASVNEIERS 1107
Query: 304 EEQLETL 310
E E+L
Sbjct: 1108 REIFESL 1114
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 132/314 (42%), Gaps = 10/314 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS----LF 166
Y+ LI++ GK AM +F+ M+ G +PD++V+N+LI A L + D AL
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYL 195
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E +PN TY+ + F+ G VD +N + + S +V T+ ++ K
Sbjct: 196 DKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGK 255
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ +++ ++++ K L+ K
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ Y + +D+ E + + N P + + +I +Y +
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT--YECMIMMYGYCGSVSRAREIFEE 373
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRA 404
+G+ K A + ++ Y R Y D H ++++ +TY FL Y +A
Sbjct: 374 VGESDRVLK-ASTLNAMLEVYCRNGLYIEADKLF-HNASAFRVHPDASTYKFLYKAYTKA 431
Query: 405 GLSGKLDSVINEMK 418
+ ++ ++ +M+
Sbjct: 432 DMKEQVQILMKKME 445
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 97 LDKML-KGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
D+ML +G E LD YA + G K+ + A + M A+G PD ++N ++
Sbjct: 467 FDEMLHEGLE--LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGL 524
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G++ A L + MVS + P+ TY + I G + + + ++ G + +
Sbjct: 525 CKLGNLEEASELLQKMVS-DGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V TY LIHG + ++ EM GI+P++ ++ GLC R++D+ +F
Sbjct: 584 VVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFA 643
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ G N+ L+ C +G E
Sbjct: 644 EMVEKGIFPNKYSYTILINENCNMGNWQE 672
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 1/174 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V+ +M GIKP +N+L+ + G V L L M PN TY+ I
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEM-QRRGCAPNDVTYNVLI 276
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G + + G V+ TY LI+G EEM+ G
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
P++ + GLC ++ L +L + L+ YC LG +
Sbjct: 337 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNL 390
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 5/241 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+ +LKG + Y I K+ + AM + M A + PD +N+LI G
Sbjct: 329 EMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLG 388
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+++ A LF+ + S + P TY+ + G G ++ + I G + ++ TY
Sbjct: 389 NLMKAFLLFDELRSIYLF-PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
L++GS K F++EM+ G+ + S +++ G R S + +L
Sbjct: 448 TILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIV-GELKLGDTSRAFSLQEEML 506
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G+ + + +V C+LG ++E E L+ + P+ + ++ II + + R
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVT--YTSIIHAHLENGR 564
Query: 337 L 337
L
Sbjct: 565 L 565
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ N+ A +F + + + P +N+L+ G++ A L ++ +
Sbjct: 377 YNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL-KVEM 435
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E P+ TY ++G +G++ +++ + G ++ Y + I G LK D
Sbjct: 436 INEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDT 495
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
EEM++ G P + I V++GLC L+ L+ ++ G + +
Sbjct: 496 SRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSI 555
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + E GR+ + E + +P V+ ++ +I +A RL+ M ++
Sbjct: 556 IHAHLENGRLRKGREIFYEMLSKGLTPSVVT--YTVLIHGHAGKGRLERAFIYFSEMQEK 613
Query: 351 GL 352
G+
Sbjct: 614 GI 615
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G+K + +N LI G + ALSL E MV P TY++FI
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA-SPTVATYNSFI 346
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G LG + + + +A +V +Y +LI+G + + ++E+ S+ +
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLF 406
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P+I +L+GLC + +L+ + ++ G + LV C++G + +E
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQE 465
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 36/191 (18%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ N+ A + M + G+ PD + S+I A L +G + +F M+S + P+
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLS-KGLTPSV 584
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF--- 236
TY I G + G ++ +++ G NV TY SLI+G K R D F
Sbjct: 585 VTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAE 644
Query: 237 --------------------------------YEEMMSLGIIPSIPILEKVLEGLCARRK 264
Y++M+ G+ P +L+ L K
Sbjct: 645 MVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCK 704
Query: 265 LDRVKSFLKFL 275
L V+ L
Sbjct: 705 LQAVRQLESLL 715
>gi|357138495|ref|XP_003570827.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Brachypodium distachyon]
Length = 381
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G++ D+ V+N+L+ A + D L + M + P+ TY+ + G + G V
Sbjct: 182 HGVRADAHVYNALMKAHCAASDPEGVLGVLRRM-KGDGVDPDLVTYNTLVFGLARAGMVA 240
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ A A G +V TY SL++G D + EEM + G P+ +L
Sbjct: 241 KARTYVDAMAAEGHFPDVITYTSLMNGMCVKGDALGALKLLEEMEAKGCEPNARTYNTLL 300
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
GLC RKLD+ + ++G K+ ++ C GRV + E
Sbjct: 301 MGLCKNRKLDKAVEVYRSMVGAAMKLETPAYASFIRALCRAGRVPDAYE 349
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ V M+ G+ PD +N+L+ +G V A + + M ++E + P+ TY + ++
Sbjct: 208 LGVLRRMKGDGVDPDLVTYNTLVFGLARAGMVAKARTYVDAM-AAEGHFPDVITYTSLMN 266
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G+ K A G N +TY +L+ G K R D Y M+ +
Sbjct: 267 GMCVKGDALGALKLLEEMEAKGCEPNARTYNTLLMGLCKNRKLDKAVEVYRSMVGAAMKL 326
Query: 248 SIPILEKVLEGLC 260
P + LC
Sbjct: 327 ETPAYASFIRALC 339
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 4/219 (1%)
Query: 97 LDKMLKGNESCLDE-YACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+KM +G C + Y+ LI ++G K + A +F M +GI P +N+L+
Sbjct: 261 FEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 320
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
L + + A+ L M+ + PN TY+ IS V+ K +A GF +
Sbjct: 321 LSTAKLQDAMELTYFMLD-QVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPS 379
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
++ +E L+ +A D Y+EM + + +L+G+ R +D K FLK
Sbjct: 380 LKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLK 439
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ G ++ KLV C G+ D+ + +E L +
Sbjct: 440 QMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVR 478
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 135/356 (37%), Gaps = 48/356 (13%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G+ Y+ ++ K NV AM VF M A+G +PD FN L+ + + A
Sbjct: 128 GHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEA 187
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA----MNKWYAANIAAGFSVNV---- 214
LF M +S KP+ TY+ I+G +D + + +++ F
Sbjct: 188 RELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLID 246
Query: 215 ---------QTYES--------------------LIHGSLKARDFDSVDRFYEEMMSLGI 245
Q YE LI+G KAR ++EM GI
Sbjct: 247 HLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGI 306
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ +LEGL + KL F+L N + L+ C+ +V+E +
Sbjct: 307 SPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFK 366
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD---VEYSVGRMGKQGLSFKSAEDVEM 362
L + P L + ++ A + RLDD + + R+ Q L S +
Sbjct: 367 LLSAMRDKGFVPS--LKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSS----NI 420
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINEM 417
++ R + D FL + + + + TYD LV G G + + ++ E+
Sbjct: 421 LLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEEL 476
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 9/199 (4%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGN 194
Q P+ +N +I + ++ AL+ M EE + P Y + + F GN
Sbjct: 92 QHCAPNVVSYNIIIDGYCKARNIEKALAFLREM---EELGHPPTPHAYSSIVQSFCKTGN 148
Query: 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254
V +A A G ++ + L+ G +AR + M S G P +
Sbjct: 149 VSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 208
Query: 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK-- 312
++ GLC +KLD L+ + L+ C+ R+ + E E + +
Sbjct: 209 MIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGP 268
Query: 313 --CNQSPEVLLHFFSGIIR 329
C + +L +G+ +
Sbjct: 269 CPCTEPAYSVLILINGLCK 287
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 96 RLDKMLKGNESCL--------DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R D + K +E+ L Y LIA K+ A V MEA+G PD+ FN
Sbjct: 658 RADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFN 717
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+L+ V ALS + +M+ + PN TY+ I G S G + + KW + +
Sbjct: 718 ALMHGYFVGSHVGKALSTYSMMMEAG-ISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKS 776
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G + TY +LI G K + Y EM++ G++P
Sbjct: 777 RGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVP 816
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K ++ A+ +++ M +GI D V+ L+ +GD+ A F++++
Sbjct: 297 YTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLL 356
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN TY A + G G++ + + NV TY S+I+G +K
Sbjct: 357 EDNEV-PNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGML 415
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +M ++P+ V++GL K + K + G + N + L
Sbjct: 416 EEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDAL 475
Query: 291 VKCYCELGRVDELE 304
V +GR+ E++
Sbjct: 476 VNHLKRIGRIKEVK 489
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 72 FSWDALITSLQSSSPKK--AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
F++ +I L + ++ +++ E RL ++ N LD + G+++ V
Sbjct: 435 FTYGTVIDGLFKAGKQEVASEMSKEMRLIG-VEENNYILDALVNHLKRIGRIKEVK---G 490
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M ++G+ D + SLI GD ALS E M +E + +Y+ ISG
Sbjct: 491 LVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEM-QEKEMPWDVVSYNVLISGL 549
Query: 190 SSLGNVDAMNKW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G V A W Y G ++ T+ +++ K DF+ + + +++M S GI PS
Sbjct: 550 LKFGKVGA--DWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPS 607
Query: 249 IPILEKVLEGLCARRKL 265
+ I V+ LC + K+
Sbjct: 608 LMICNIVVGMLCEKGKM 624
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 5/251 (1%)
Query: 71 QFSWDAL-ITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAM 128
+ WD + L S K ++ +W M KG E + + ++ K + +
Sbjct: 534 EMPWDVVSYNVLISGLLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGIL 593
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
++ M++ GIKP + N ++ LC G + A+ + + M+ E + PN TY F+
Sbjct: 594 KLWDKMKSCGIKPSLMICN-IVVGMLCEKGKMKEAIDILDQMMFMEIH-PNLTTYRIFLD 651
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
S DA+ K + ++ G ++ Q Y +LI K E+M + G +P
Sbjct: 652 MSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVP 711
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ G + + S ++ G N +++ + G + E+E+ L
Sbjct: 712 DTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWL 771
Query: 308 ETLTKCNQSPE 318
+ P+
Sbjct: 772 SEMKSRGMRPD 782
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G+ P+ + +L+ + + D AL+L+ MV + Y ++G G
Sbjct: 285 MEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVV-RGIPVDLVVYTVLMAGLFKAG 343
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
++ K + + NV TY +L+ G KA D S + +M+ + P++
Sbjct: 344 DLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYS 403
Query: 254 KVLEGLCARRKLDRVKSFLK 273
++ G + L+ S ++
Sbjct: 404 SMINGYVKKGMLEEAVSLMR 423
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 1/187 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G PD F+S+I G V+ L M Y PN TY +
Sbjct: 247 YRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVY-PNHVTYTTLVDSLF 305
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ Y+ + G V++ Y L+ G KA D ++ ++ ++ +P++
Sbjct: 306 KAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVV 365
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC L + + +L N ++ Y + G ++E + +
Sbjct: 366 TYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKM 425
Query: 311 TKCNQSP 317
N P
Sbjct: 426 EDQNVVP 432
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++M G+ PD ++NSLI +G V +SL + + P+ + I
Sbjct: 77 AARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFALNVLI 136
Query: 187 SGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+G + +A ++ SV+ TY ++I G + D +F EM+ +G
Sbjct: 137 HSLCKVGQLS-----FAISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIG 191
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
I+P +++G C R K+ +
Sbjct: 192 ILPDTVSFNTLIDGFCKVGNFARAKALV 219
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
+ ++ L+ SL + + L L ++ +++G L Y L+A K ++ A
Sbjct: 293 NHVTYTTLVDSLFKAKDYRHALALYSQM--VVRGIPVDLVVYTVLMAGLFKAGDLREAEK 350
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F + P+ + +L+ +GD+ +A + M+ + PN TY + I+G+
Sbjct: 351 TFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVF-PNVVTYSSMINGY 409
Query: 190 SSLG----NVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
G V M K N+ GF TY ++I G KA + +EM +G
Sbjct: 410 VKKGMLEEAVSLMRKMEDQNVVPNGF-----TYGTVIDGLFKAGKQEVASEMSKEMRLIG 464
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ + IL+ ++ L ++ VK +K ++ G
Sbjct: 465 VEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKG 499
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 99 KMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
++L+G ++ LD Y LI + V A+ V M +G P +N+LI +
Sbjct: 279 EVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKA 338
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
+V AL LF +M + + PN+ Y FI G +G ++ ++++ ++ G + T
Sbjct: 339 NEVDKALQLFRVM-EEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVT 397
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGII 246
Y +LI G A D R Y EM G I
Sbjct: 398 YNALIRGLFGANRMDEAHRLYREMGERGYI 427
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A + +SM ++G PD + SLI C +G + A LF+ ++ E+ ++ Y+
Sbjct: 237 LAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVL 296
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G V+ + A + G +QTY +LI G KA + D + + M G
Sbjct: 297 IEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGF 356
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLK 273
P+ I ++GLC K++ F +
Sbjct: 357 SPNTMIYSTFIDGLCKVGKINEAHEFFQ 384
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 118/282 (41%), Gaps = 8/282 (2%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
++ ALI+ L + + A V + ++K + N LD Y L+A + + + A +
Sbjct: 150 MTYTALISVLCKHNRADDAMKVFDIMVEKEIVPN---LDVYTSLLAAHCRTRKLDGAYRL 206
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M +G P ++ + L+ CLC+G + S + P+ TY + I G
Sbjct: 207 FVEMIQRGYGPSASTYG-LLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCC 265
Query: 191 SLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G + + + ++ + Y LI G +A + M+ G IP++
Sbjct: 266 MAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTL 325
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ G ++D+ + + G+ N + + C++G+++E E +
Sbjct: 326 QTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQ 385
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
+ P+ + ++ +IR ++R+D+ MG++G
Sbjct: 386 SVERGCVPDNVT--YNALIRGLFGANRMDEAHRLYREMGERG 425
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 2/180 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+++ V +F +E+ G+ +N+++ A +CSGD +I V P+
Sbjct: 57 EMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSL-PHV 115
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y + G ++ I + TY +LI K D + ++
Sbjct: 116 LAYKTMLDCLIKTGKTREASEVVGEMIKKSVP-DGMTYTALISVLCKHNRADDAMKVFDI 174
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ I+P++ + +L C RKLD ++ G+ + + L++C C GR
Sbjct: 175 MVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGR 234
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
++ NV A+ + M +G PD +NSLI G+ A+ + + M+ E PN+
Sbjct: 275 RIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMIL-RECSPNT 333
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ IS ++A ++ G +V T+ +LI G +++ D +EE
Sbjct: 334 VTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEE 393
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + G P +++ LC R+L LK + G N + L+ C+ R
Sbjct: 394 MKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRR 453
Query: 300 VDELEE---QLETL 310
+++ EE Q+E L
Sbjct: 454 IEDAEEIFDQMELL 467
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 122/275 (44%), Gaps = 8/275 (2%)
Query: 52 VSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC 107
+ + LD VD F+ +++++LI+ + + +KA +L+ + + N
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVT 335
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y LI+ K + A + + ++G+ PD FN+LI S + A+ +FE
Sbjct: 336 ---YNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFE 392
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M ++ KP+ TY I + ++G + N Y +LI G K+
Sbjct: 393 EM-KNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
R + + +++M LG+ S +++GLC ++++ + ++ G K ++
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTY 511
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ +C +G +++ + ++T+ P++ +
Sbjct: 512 NSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTY 546
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V A + M +G+KPD +NSL+ GD+ A + + M
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY I G G VD +K + G + Y +I +
Sbjct: 536 SNG-CEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRT 594
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
R + EMM P + V GLC
Sbjct: 595 KEGMRLFREMMEKSDPPDALTHKIVFRGLC 624
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 95/219 (43%), Gaps = 5/219 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ +++ G P++ F +LI + ++ L + E + +KP++ Y+ ++
Sbjct: 77 LLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENELG---FKPDTNFYNIALNAL 133
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ + ++ + G ++V T+ LI KA EEM + G+ P
Sbjct: 134 VEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDE 193
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G L+ K +LG G + + LV +C+ GRV+E +
Sbjct: 194 ITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLE 253
Query: 310 LTKCNQSPEVLL--HFFSGIIRLYALSDRLDDVEYSVGR 346
+++ SP+ + +G R+ ++D LD V++ + +
Sbjct: 254 VSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEK 292
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F++ LI SL K L+L ++ + + Y LI K + + A +
Sbjct: 403 EFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVV--YNTLIDGLCKSRRIEDAEEI 460
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ME G+ S +N+LI + V A L + M+ E KP+ TY++ ++ F
Sbjct: 461 FDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIM-EGLKPDKFTYNSLLTYFC 519
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+G+++ + G ++ TY +LI G +A D + + GI+ +
Sbjct: 520 RVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPH 579
Query: 251 ILEKVLEGLCARRK 264
V++ L R++
Sbjct: 580 AYNPVIQALFMRKR 593
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 6/200 (3%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
IAL+ V++ + + + M +GI D + FN LI A + + A+ + E M ++
Sbjct: 128 IALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEM-AN 186
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KP+ T+ + GF G+++ K + G + + + L++G K +
Sbjct: 187 HGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEE 246
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
RF E+ G P ++ G C ++ + F++ G+ + L+
Sbjct: 247 ALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLIS 306
Query: 293 CYCELGRVDELEEQLETLTK 312
C+LG E E+ +E L +
Sbjct: 307 GMCKLG---EFEKAIEILQQ 323
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 3/228 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI K + A+ + M G+KPD F +L+ + GD+ AL + + M+
Sbjct: 161 FNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQML 220
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
N + ++GF G V+ ++ GFS + T+ SL++G + +
Sbjct: 221 GYGCLLTNV-SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNV 279
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + M+ G P + ++ G+C + ++ L+ ++ N L
Sbjct: 280 NDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTL 339
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
+ C+ ++ + L P+V F+ +I+ LS D
Sbjct: 340 ISALCKENEIEAATDLARILVSKGLLPDVCT--FNTLIQGLCLSKNQD 385
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 9/200 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----VSSEEYKPNSKTY 182
A+ + ME+ G ++ V+N+LI S + A +F+ M VS +S TY
Sbjct: 422 ALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSR-----SSVTY 476
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I G V+ ++ I G + TY SL+ + D + + M S
Sbjct: 477 NTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS 536
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G P I ++ GLC ++D L+ + G + + +++ R E
Sbjct: 537 NGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKE 596
Query: 303 LEEQLETLTKCNQSPEVLLH 322
+ + + P+ L H
Sbjct: 597 GMRLFREMMEKSDPPDALTH 616
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI + K+ V A+ V ME+ GIK + ++ LI L D A ++FE ++
Sbjct: 451 YGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVI 510
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ Y+ I F +GN+D +T+ +IHG +A +
Sbjct: 511 -KDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEM 569
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G IP++ ++ GL +R++++ L + G +E+ +
Sbjct: 570 RRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTI 629
Query: 291 VKCYCELG 298
+ Y LG
Sbjct: 630 MNGYAALG 637
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Query: 97 LDKMLK--GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+ KM++ G + + Y+ LI K+++ A VF + G+KPD ++N++I A
Sbjct: 470 VSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFC 529
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G++ A+ + + M + ++P S+T+ I GF+ G + + + +G V
Sbjct: 530 GMGNMDRAIHMVKEM-QKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTV 588
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
T+ +L+ G ++ R + +EM G+ P ++ G A + +
Sbjct: 589 HTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTK 648
Query: 275 LLGGGWKINENMAQKLVKCYCELGRV 300
L G +++ + L+K C+ GR+
Sbjct: 649 LRNEGLELDVFTYEALLKACCKSGRM 674
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M AQ I ++ V+N LI GDV A L + M E +P
Sbjct: 671 SGRMQS---ALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQM-KQEGVQP 726
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FI+ G++ K A G NV+TY +LIHG A + R +
Sbjct: 727 DIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCF 786
Query: 238 EEMMSLGIIPSIPILEKVLEGLCAR 262
EEM G+ P + ++ L +R
Sbjct: 787 EEMKLAGLKPDKAVYHCLMTSLLSR 811
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 9/247 (3%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ + ++ A F SM +GI P S V+ SLI A D+ ALS M
Sbjct: 304 EFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKM 363
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIA-----AGFSVNVQTYESLIHG 223
E + + TY + GF+ +GN D + N A ++ G + Y ++++G
Sbjct: 364 -KEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTMMNG 422
Query: 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
+ + ++ + G PS+ ++ K+ + K + G K N
Sbjct: 423 YTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHN 482
Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
L+ + +L E + K P+V+L ++ II+ + +D +
Sbjct: 483 MKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVL--YNNIIKAFCGMGNMDRAIHM 540
Query: 344 VGRMGKQ 350
V M K+
Sbjct: 541 VKEMQKK 547
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/193 (17%), Positives = 79/193 (40%), Gaps = 1/193 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F M G P FN+L+ + + A+ + + M + P+ TY +
Sbjct: 572 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAG-VSPDEHTYTTIM 630
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+++LG+ +++ G ++V TYE+L+ K+ S EM + I
Sbjct: 631 NGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIP 690
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ + +++G R + ++ + G + + + + C+ G + +
Sbjct: 691 RNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKT 750
Query: 307 LETLTKCNQSPEV 319
++ + P V
Sbjct: 751 IQEMEALGVKPNV 763
>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g18900-like [Cucumis sativus]
Length = 874
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + + Y +I G+ + A++VF M+ G +PD + +LI
Sbjct: 402 LDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAK 461
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
SG + A+ ++E M + P++ TY I+ G+++A ++ + + G N+
Sbjct: 462 SGFLDVAMGMYEKMQDAG-LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLV 520
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I KAR+++ + Y +M G P V+E L L+ + +
Sbjct: 521 TYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEM 580
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V + E + K P V S +R++ L
Sbjct: 581 QKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQL 640
Query: 334 SD 335
SD
Sbjct: 641 SD 642
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 104 NESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+E C+ Y +IAL K +N A+ ++ M+ G +PD + ++ G +
Sbjct: 512 DEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLE 571
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A +F I + + + P+ Y + + GNV +WY A + AG NV T SL
Sbjct: 572 EAEGIF-IEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSL 630
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ L+ + + M++ G+ PS+
Sbjct: 631 LSAFLRVHQLSDAYQLLQSMLTFGLKPSL 659
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 8/312 (2%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y LI + K + A M A G+ P+ ++ S+I G V AL +F+
Sbjct: 423 LQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFK 482
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+M E PN+ TY + I G + G + V Y +LI G K
Sbjct: 483 LM-EHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKK 541
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+FD+ R +E M G+ P + + LC K R + FL+ G + +
Sbjct: 542 HEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALC---KSGRAEEAYSFLVRKGVVLTKVTY 598
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
LV + + G D +E + N+ + L+ +S +++ +L++ + +M
Sbjct: 599 TSLVDGFSKAGNTDFAAVLIEKMV--NEGCKADLYTYSVLLQALCKQKKLNEALSILDQM 656
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
G+ ++I + +D LF + I +K TY ++ Y + G
Sbjct: 657 TVSGVKCNIVA-YTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQ 715
Query: 407 SGKLDSVINEMK 418
+ + +I EM+
Sbjct: 716 IEEAEHLIGEME 727
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 5/215 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K A +F ME G+ PD +N L A SG A S +
Sbjct: 531 YTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSF----L 586
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + + GFS GN D + G ++ TY L+ K +
Sbjct: 587 VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKL 646
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++M G+ +I ++ + K D KS ++ G K +
Sbjct: 647 NEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVF 706
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLL-HFF 324
+ YC++G+++E E + + + +P+V+ H F
Sbjct: 707 ISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIF 741
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 57/255 (22%)
Query: 97 LDKMLKGNESC---LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
++KM+ NE C L Y+ L+ K + + A+ + M G+K + + +I
Sbjct: 618 IEKMV--NEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ G A SLF M+SS +KP++ TY FIS + +G ++ G + +
Sbjct: 676 IKEGKHDHAKSLFNEMISS-GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPD 734
Query: 214 VQTYESLIHG----SLKARDFDSVDR---------------------------------- 235
V TY I+G R F ++ R
Sbjct: 735 VVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTS 794
Query: 236 -------------FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
E MM G+ P++ ++ G C +L+ L +LG
Sbjct: 795 GMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISP 854
Query: 283 NENMAQKLVKCYCEL 297
NE + L+KC C++
Sbjct: 855 NEEIYTMLIKCCCDI 869
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 4/235 (1%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
N +++++LI L +A+ +L + +G + + LI K + + A
Sbjct: 351 NPDDWTYNSLIYGLCGGKLDEAEELLN---GAIARGFTPTVITFTNLINGYCKAERIDDA 407
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ V ++M + K D + LI + + A M ++ PN Y + I
Sbjct: 408 LRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG-LAPNVVIYTSIID 466
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G+ +G V A + + G N TY SLI+G ++ + +M GI P
Sbjct: 467 GYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITP 526
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ +++G C + + D + + G +E L C+ GR +E
Sbjct: 527 GVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEE 581
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 4/229 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K ++ A F + G++ D+ N+L+ + D+ A L +M+
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLL-MMM 240
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ N +Y I G V + G S+N+ Y LI G K
Sbjct: 241 PLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRI 300
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+EM G++PS+ +++G C ++ + G ++ L
Sbjct: 301 HDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSL 360
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ C G++DE EE L +P V+ F+ +I Y ++R+DD
Sbjct: 361 IYGLCG-GKLDEAEELLNGAIARGFTPTVIT--FTNLINGYCKAERIDD 406
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 86/250 (34%), Gaps = 52/250 (20%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G++ Y I+ K+ + A H+ ME G+ PD ++ I C G + A
Sbjct: 695 GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRA 754
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA-------MNKWYAAN---------I 206
S + MV + +PN TY + F + ++A M W N +
Sbjct: 755 FSTLKRMVDAS-CEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMM 813
Query: 207 AAGFSVNVQTYESLIHGSLKA-----------------------------------RDFD 231
G + V TY S+I G KA + F
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFG 873
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
F +M+ G P + ++ GLC DR KS LLG + NE + L
Sbjct: 874 KDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILN 933
Query: 292 KCYCELGRVD 301
+ G VD
Sbjct: 934 DGLLKAGHVD 943
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY+A I G+ G + A G + + TY SLI+G L D +
Sbjct: 317 PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYG-LCGGKLDEAEEL 375
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLD---RVKSFLKFLLGGGWKINENMAQKLVKC 293
++ G P++ ++ G C ++D RVKS ++ K++ L+
Sbjct: 376 LNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKS---NMISSNCKLDLQAYGVLINV 432
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ R+ E +E L + +P V++ ++ II Y
Sbjct: 433 LIKKCRLKEAKETLNEMFANGLAPNVVI--YTSIIDGY 468
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 10/254 (3%)
Query: 60 DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIAL 117
D V F Q S+ LI L + KA RL + L+G+ D Y +I
Sbjct: 155 DKVVAQGFQLDQVSYGTLINGLCKAGETKAV----ARLLRKLEGHSVKPDLVMYTTIIHC 210
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K + + A +++ M +GI P+ + +LI G++ A SL M + P
Sbjct: 211 LCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEM-KLKNINP 269
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ T++ I + G +D + N+ TY SLI G K +
Sbjct: 270 DVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 329
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE- 296
++M GI P++ +L+ LC +L+ K F + LL G+ +N ++ C+
Sbjct: 330 KKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKA 389
Query: 297 --LGRVDELEEQLE 308
G V +L+ ++E
Sbjct: 390 GLFGDVMDLKSKME 403
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 42/340 (12%)
Query: 117 LSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSE 173
LS V+N P + +F E GI PD + LI C C +T A S+F ++
Sbjct: 68 LSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI-NCFCHLTHITFAFSVFANILK-R 125
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y PN+ T + I G G + ++ +A GF ++ +Y +LI+G KA + +V
Sbjct: 126 GYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAV 185
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R ++ + P + + ++ LC + L ++ G N L+
Sbjct: 186 ARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHG 245
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLL---------------------------HFFSG 326
+C +G + E L + N +P+V + F
Sbjct: 246 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPN 305
Query: 327 IIRLYALSDRL---DDVEYSVG---RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
I+ +L D L +E ++ +M +QG+ + +++ + + + F
Sbjct: 306 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ-PNVYSYTILLDALCKGGRLENAKQFF 364
Query: 381 DH--IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
H +KG Y L TY+ ++ G +AGL G + + ++M+
Sbjct: 365 QHLLVKG-YHLNVRTYNVMINGLCKAGLFGDVMDLKSKME 403
>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Cucumis sativus]
Length = 874
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + + Y +I G+ + A++VF M+ G +PD + +LI
Sbjct: 402 LDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAK 461
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
SG + A+ ++E M + P++ TY I+ G+++A ++ + + G N+
Sbjct: 462 SGFLDVAMGMYEKMQDAG-LTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLV 520
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +I KAR+++ + Y +M G P V+E L L+ + +
Sbjct: 521 TYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEM 580
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G V + E + K P V S +R++ L
Sbjct: 581 QKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQL 640
Query: 334 SD 335
SD
Sbjct: 641 SD 642
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 104 NESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160
+E C+ Y +IAL K +N A+ ++ M+ G +PD + ++ G +
Sbjct: 512 DEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLE 571
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
A +F I + + + P+ Y + + GNV +WY A + AG NV T SL
Sbjct: 572 EAEGIF-IEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSL 630
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ L+ + + M++ G+ PS+
Sbjct: 631 LSAFLRVHQLSDAYQLLQSMLTFGLKPSL 659
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M ++G PD +N+L+ A G V A+ + +SS+ P TY+ I
Sbjct: 241 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN-QLSSKGCSPVLITYNTVI 299
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G + K G ++ TY SL+ G + D +F+ ++ LGI
Sbjct: 300 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR 359
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
P+ ++ GLC R+ DR FL +++ K E
Sbjct: 360 PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 130/344 (37%), Gaps = 36/344 (10%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L ++ + + K V AM + M +G KPD +N LI G + A+
Sbjct: 82 LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 141
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M S +PN T++ + S G K + + G S +V T+ LI+ +
Sbjct: 142 NM-PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
E+M G P+ +L G C +K+DR +L ++ G +
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 260
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII---------RLYALSDRL- 337
L+ C+ G+VD E L L+ SP VL+ + + I R L D +
Sbjct: 261 NTLLTALCKDGKVDVAVEILNQLSSKGCSP-VLITYNTVIDGLSKVGKTERAIKLLDEMR 319
Query: 338 ------DDVEYS-----VGRMGKQGLSFKSAEDVE------------MVICSYFRCAAYD 374
D + YS + R GK + K D+E ++ + D
Sbjct: 320 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 379
Query: 375 R-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
R +D I K ATY L+ G GL+ + ++NE+
Sbjct: 380 RAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG L Y +I KV A+ + M +G+KPD ++SL+ G V
Sbjct: 286 KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDE 345
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ F + +PN+ TY++ + G D + A I+ TY LI
Sbjct: 346 AIKFFHDL-EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILI 404
Query: 222 HG 223
G
Sbjct: 405 EG 406
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 19/247 (7%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSS 172
LI GK + + M G K D +N+LI C C G + TA F M
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI-NCFCKFGRMETAYGYFAAM-KR 286
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
E N T+ F+ F G V K +A G ++N TY LI G+ KA D
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+EM+ G+ ++ +++GLC RK+ + L+ + G + NE + L+
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406
Query: 293 CYC-------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
+ LG + E++ N+ E+ + + +I+ +LD+ + +
Sbjct: 407 GHFMNKNSEKALGLLSEMK---------NKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 346 RMGKQGL 352
+M + GL
Sbjct: 458 KMDESGL 464
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 1/217 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI V + A + T M+ G++P+ ++ +++ AC SG V
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPE 486
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+++ + ++ S ++PN TY A I G G++D + G NVQ Y +L+
Sbjct: 487 AIAMLQKILDSG-FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + + + EM+ G+ + +L+G + L + ++ G +
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ + +C L + E E + +P+
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM +F M +G+ + + LI +G + A+ L + MV + N TY +
Sbjct: 312 AMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR-QGVPLNVVTYTVLV 370
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G V AG N Y +LIHG ++ + EM + G+
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL---------------------------------- 272
I + +++GLC KLD KS L
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490
Query: 273 -KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ +L G++ N L+ C+ G +DE + P V
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ S K + A ++F M A GI P FNS+I G V A +
Sbjct: 504 YTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFI 563
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P S TY+ I G+ G +D+ Y + S NV TY SLI+G K+
Sbjct: 564 K-QSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKM 622
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +++M G+ I + ++ G C + ++ F LL G N + +
Sbjct: 623 DLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIM 682
Query: 291 VKCYCELGRVD 301
+ Y L ++
Sbjct: 683 ISAYRNLNNME 693
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 2/226 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
DKM+ KG L Y +I K + A V + G+KP++ + L+
Sbjct: 455 DKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKK 514
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
GD A ++F+ MV++ P T+++ I+G +G V I F T
Sbjct: 515 GDCEHAFNMFDQMVAA-GIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMT 573
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +I G +K DS + Y EM I P++ ++ G C K+D +
Sbjct: 574 YNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMK 633
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G +++ + L+ +C++ ++ + L + +P +++
Sbjct: 634 RKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVY 679
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 113/278 (40%), Gaps = 37/278 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKP-------------------------DSAV 145
++ LI K+ NV A ++T M+ G++P D AV
Sbjct: 365 FSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAV 424
Query: 146 FN--------SLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
N +++ LC G V A +L++ M+ + P+ +Y+ I G G +D
Sbjct: 425 ENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIG-KGITPSLVSYNHMILGHCKKGCMD 483
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
++ I +G N TY L+ GS K D + +++M++ GI+P+ ++
Sbjct: 484 DAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSII 543
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
GLC ++ + L + + ++ Y + G +D E + + S
Sbjct: 544 NGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEIS 603
Query: 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
P V+ ++ +I + S+++D M ++GL
Sbjct: 604 PNVIT--YTSLINGFCKSNKMDLALKMHDDMKRKGLEL 639
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A+ + M+ +G++ D V+ +LI D+ A F ++
Sbjct: 609 YTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLL 668
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN+ Y+ IS + +L N++A + I +++ Y SLI G LK
Sbjct: 669 EVG-LTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKL 727
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
Y EM+ GI+P I + ++ GLC +L+ LK + G
Sbjct: 728 SFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDG 774
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 128/316 (40%), Gaps = 22/316 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA +I ++ N A+ + M + + AV SLI GDV +AL LF+ +V
Sbjct: 295 YAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVV 354
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN + I S +GNV+ N+ Y G V L+ G K
Sbjct: 355 EVG-VTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLL 413
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ + + GI S+ VL LC K++ + ++G G + +
Sbjct: 414 ENAYLLLDGAVENGI-ASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHM 472
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG---RM 347
+ +C+ G +D+ E + + + P + + L S + D E++ +M
Sbjct: 473 ILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTI-----LMEGSFKKGDCEHAFNMFDQM 527
Query: 348 GKQGL-----SFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGY 401
G+ +F S + +C R + A D+L+ F IK S+ TY+ ++ GY
Sbjct: 528 VAAGIVPTDYTFNS---IINGLCKVGRVSEARDKLNTF---IKQSFIPTSMTYNCIIDGY 581
Query: 402 RRAGLSGKLDSVINEM 417
+ G +SV EM
Sbjct: 582 VKEGAIDSAESVYREM 597
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 16/254 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C+I K + A V+ M I P+ + SLI S + AL + + M
Sbjct: 574 YNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDM- 632
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + + Y I+GF + +++ K+++ + G + N Y +I +
Sbjct: 633 KRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNM 692
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ ++EM++ I + I +++GL KL +L G + M L
Sbjct: 693 EAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVL 752
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLL-------HFFSGIIR-LYALSDRL----- 337
+ C G+++ + L+ + N +P VLL HF G ++ + L D +
Sbjct: 753 INGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGL 812
Query: 338 --DDVEYSVGRMGK 349
DD Y + GK
Sbjct: 813 VPDDTTYDILVNGK 826
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNVPFAMHVFT 132
++ +I++ ++ + +A L L +M+ C L Y LI K + FA+ +++
Sbjct: 679 YNIMISAYRNLNNMEAALNLH---KEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYS 735
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +GI PD ++N LI G + A + + M P Y+ I+G
Sbjct: 736 EMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEM-DGNNITPTVLLYNTLIAGHFKE 794
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
GN+ + + + G + TY+ L++G L
Sbjct: 795 GNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKL 827
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 2/187 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + I D L+ ACL G V A F + K ++ +Y I
Sbjct: 206 AHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFG-QAAGRGLKLDAASYSIVI 264
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
++D +K + G+ + TY ++I ++ +F R +EM+ +
Sbjct: 265 QAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVP 324
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
++ + +++G C R ++ ++ G N + L++ ++G V++ E
Sbjct: 325 VNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANE- 383
Query: 307 LETLTKC 313
L T KC
Sbjct: 384 LYTRMKC 390
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 5/216 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+M +F +M++ + P FNSL+ L G A +++ M+ + P++ TY+ I
Sbjct: 167 SMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLI 226
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--G 244
GF VD +++ + +V TY +L+ G +A M G
Sbjct: 227 RGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEG 286
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ P++ ++ G C +++++ L+ + G K N LVK CE ++D+++
Sbjct: 287 LNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMK 346
Query: 305 EQLETL-TKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+ LE + + SP+ F+ II L+ + LD+
Sbjct: 347 DVLERMKSDGGFSPDTFT--FNTIIHLHCCAGNLDE 380
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 9/177 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIM 169
Y LI Q V A+ V M ++G+KP+ +N+L+ LC + + + E M
Sbjct: 294 YTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKG-LCEAHKLDKMKDVLERM 352
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
S + P++ T++ I GN+D K + + + +Y +LI + D
Sbjct: 353 KSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGD 412
Query: 230 FDSVDRFYEEMMSLGII-------PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+D ++ ++E+ I+ P + E LC K + + ++ L+ G
Sbjct: 413 YDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRG 469
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
+ +I L N+ A+ VF SM+ I DSA +++LI + GD A LF
Sbjct: 365 FNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELF 424
Query: 167 --EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
EI++S KP + +Y+ G + + G + + Q+Y ++I G
Sbjct: 425 EKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRG-TQDPQSYTTVIMGH 483
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
K ++S M+ +P I I + +++G + K K L+ +L ++
Sbjct: 484 CKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQ 540
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
Query: 108 LDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LD YA + G K+ + A + M A+G PD ++N ++ G++ A L
Sbjct: 477 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASEL 536
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+ MVS + P+ TY + I G + + + ++ G + +V TY LIHG
Sbjct: 537 LQKMVS-DGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHA 595
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ ++ EM GI+P++ ++ GLC R++D+ +F ++ G N+
Sbjct: 596 GKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY 655
Query: 286 MAQKLVKCYCELGRVDE 302
L+ C +G E
Sbjct: 656 SYTILINENCNMGNWQE 672
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 1/174 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V+ +M GIKP +N+L+ + G V L L M PN TY+ I
Sbjct: 218 AVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEM-QRRGCAPNDVTYNVLI 276
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G + + G V+ TY LI+G EEM+ G
Sbjct: 277 NGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGAS 336
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
P++ + GLC ++ L +L + L+ YC LG +
Sbjct: 337 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNL 390
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 5/241 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
+ +LKG + Y I K+ + AM + M A + PD +N+LI G
Sbjct: 329 EMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLG 388
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+++ A LF+ + S + P TY+ + G G ++ + I G + ++ TY
Sbjct: 389 NLMKAFLLFDELRSIYLF-PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
L++GS K F++EM+ G+ + S +++ G R S + +L
Sbjct: 448 TILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIV-GELKLGDTSRAFSLQEEML 506
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336
G+ + + +V C+LG ++E E L+ + P+ + ++ II + + R
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVT--YTSIIHAHLENGR 564
Query: 337 L 337
L
Sbjct: 565 L 565
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ N+ A +F + + + P +N+L+ G++ A L ++ +
Sbjct: 377 YNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL-KVEM 435
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E P+ TY ++G +G++ +++ + G ++ Y + I G LK D
Sbjct: 436 INEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDT 495
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
EEM++ G P + I V++GLC L+ L+ ++ G + +
Sbjct: 496 SRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSI 555
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ + E GR+ + E + +P V+ ++ +I +A RL+ M ++
Sbjct: 556 IHAHLENGRLRKGREIFYEMLSKGLTPSVVT--YTVLIHGHAGKGRLERAFIYFSEMQEK 613
Query: 351 GL 352
G+
Sbjct: 614 GI 615
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K A + M G+K + +N LI G + ALSL E MV
Sbjct: 272 YNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMV 331
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P TY++FI G LG + DAM + + +A +V +Y +LI+G + +
Sbjct: 332 L-KGASPTVATYNSFIYGLCKLGRMSDAMQQ-LSDMLANNLLPDVVSYNTLIYGYCRLGN 389
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++E+ S+ + P+I +L+GLC + +L+ V LK + INE +A
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELE-VAQQLKVEM-----INEGIAPD 443
Query: 290 ------LVKCYCELGRVDELEE 305
LV C++G + +E
Sbjct: 444 IVTYTILVNGSCKMGSLSMAQE 465
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 36/163 (22%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ N+ A + M + G+ PD + S+I A L +G + +F M+S + P+
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLS-KGLTPSV 584
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF--- 236
TY I G + G ++ +++ G NV TY SLI+G K R D F
Sbjct: 585 VTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAE 644
Query: 237 --------------------------------YEEMMSLGIIP 247
Y++M+ G+ P
Sbjct: 645 MVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQP 687
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 139/356 (39%), Gaps = 36/356 (10%)
Query: 5 CRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSV--SSSNPLISRLLQV-PVSQIKTTLDS 61
C V + R PLRF + + V S + ++ R++ P +I +TLD+
Sbjct: 61 CTVARQSTDERASAEPLRFTVTPGDAFGDGPPVGMSEAAKMVCRIVSTQPEPKIASTLDA 120
Query: 62 VDI--------------------------FAFNSSQFSWDAL-ITSLQSSSPKKAQLVLE 94
+ + +A FS+ A +L + K Q L
Sbjct: 121 LGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGKIKQFRLV 180
Query: 95 WRLDKMLKGNES-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W L + ++ D + ++ + + V A+ F M G+K + + +N LI
Sbjct: 181 WSLVETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTL 240
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
S V A ++++ M ++ P+ KTY + G+ ++ + Y I AG +
Sbjct: 241 SKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPD 300
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V Y LI K+ D + + EM + G +PS + ++ GL + +LD + +
Sbjct: 301 VVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFE 360
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-----EVLLHFF 324
G+ + +V YC + + ++ + KC P +V+LH+
Sbjct: 361 HYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYL 416
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 10/291 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEW--RLDKMLKGNESCL 108
V + T + + IF + ++ LI +L +S KKAQ + + R K + L
Sbjct: 211 VKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPD----L 266
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
Y L+ G +++ ++ M GI+PD + LI A SG A+ +F
Sbjct: 267 KTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYE 326
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M +S P+ Y I+G S +D K++ +GF + V T +++ +A
Sbjct: 327 MEASG-CMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRAS 385
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
F + +EM + P+ + +L L +K + + + + G + N
Sbjct: 386 KFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYT 445
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+V +C GRVD + + + + P +H FS +I +RL++
Sbjct: 446 MMVGMFCSNGRVDMALKVWKQMGEKGVLP--CMHMFSALINGLCFENRLEE 494
>gi|242070261|ref|XP_002450407.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
gi|241936250|gb|EES09395.1| hypothetical protein SORBIDRAFT_05g004830 [Sorghum bicolor]
Length = 462
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 4/200 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+A +V + + V M G++PD+ +NSLI SG V AL LF+ M+
Sbjct: 50 YNTLLAAHCRVAGLDAGIAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRALDLFDEML 109
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+S +Y+A + G+ + + +A G + TY +L+ G KA
Sbjct: 110 RS-GVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADKGVAPCATTYNTLLDGLFKAGHA 168
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ R + + G+ I ++ GLC K+ + LK L N +
Sbjct: 169 TNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTV 228
Query: 291 VKCYCELGRVDELEEQLETL 310
+KC GR E+ LET
Sbjct: 229 MKCCFRYGR---FEQGLETF 245
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 11/270 (4%)
Query: 58 TLDSVDIF------AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
T+ ++D+F +S++AL+ L +S P+ A V D KG C
Sbjct: 98 TVRALDLFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFA---DMADKGVAPCATT 154
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K + A +F ++ G+ +N++I SG V A + + +
Sbjct: 155 YNTLLDGLFKAGHATNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKEL- 213
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E+ PN+ TY + G + + + + + G+ + Y ++I +K
Sbjct: 214 GRTEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYISDAFPYTTVISALVKKGRM 273
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + E M+ G ++ C K+D L + GG + +E L
Sbjct: 274 QEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKIDDAFELLNMMEEGGLESDEYTFSIL 333
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
V C++G+++ E+Q+ ++ + V+
Sbjct: 334 VNGLCKMGQIEAAEKQIWSMEMMDMQSNVV 363
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/186 (18%), Positives = 79/186 (42%), Gaps = 3/186 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVD 196
G+ PD +N+L+ A + +++ M + +P++ TY++ I+G G V
Sbjct: 42 GLPPDVVTYNTLLAAHCRVAGLDAGIAVVHRMREAG-VRPDAVTYNSLITGADRSGLTVR 100
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A++ + + +G + + +Y +L+H ++ + R + +M G+ P +L
Sbjct: 101 ALD-LFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADKGVAPCATTYNTLL 159
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+GL ++L G + ++ C+ G+V L+ L + +
Sbjct: 160 DGLFKAGHATNAYRMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHA 219
Query: 317 PEVLLH 322
P + +
Sbjct: 220 PNAVTY 225
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 4/200 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ A+ V ME+ GI P+ +N+LI A C+ +++ + + ++ +P
Sbjct: 212 SGKLEK---AVEVLREMESVGITPNVVSYNTLI-AGHCNKGLLSIATKLKNLMGKNGLEP 267
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T+++ I GF G + N++++ + N TY +LI+G + + + + Y
Sbjct: 268 NVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVY 327
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EEMM G+ I ++ GLC K + +K L N + L+ C
Sbjct: 328 EEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCAR 387
Query: 298 GRVDELEEQLETLTKCNQSP 317
D + +++ + P
Sbjct: 388 KNSDRAFQLYKSMVRSGCHP 407
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 10/183 (5%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L++++ K++N+ M G++P+ FNSLI G + A F M
Sbjct: 249 LLSIATKLKNL---------MGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEM-KVM 298
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN+ TY+ I+G+ +GN + K Y + G ++ TY +LI G K
Sbjct: 299 NVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKA 358
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+E+ ++P+ ++ G CAR+ DR K ++ G NE + L
Sbjct: 359 AFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSA 418
Query: 294 YCE 296
+ +
Sbjct: 419 FVK 421
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+V N A V+ M G+K D +N+LI LC + +
Sbjct: 307 YNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILG-LCKEGKTKKAAFLVKEL 365
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN+ TY A ISG + N D + Y + + +G N QT++ L +K DF
Sbjct: 366 DKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDF 425
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ +M + + L ++ +GLC
Sbjct: 426 EGAFNVLMDMFARSMASDSNTLLEIYDGLC 455
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
V A+ + M I P+S FN ++ A SG + A+ + M S PN +
Sbjct: 178 HRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREM-ESVGITPNVVS 236
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I+G + G + K G NV T+ SLIHG K +RF+ EM
Sbjct: 237 YNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMK 296
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ + P+ ++ G + + ++ G K + L+ C+ G+
Sbjct: 297 VMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTK 356
Query: 302 ELEEQLETLTKCNQSP 317
+ ++ L K N P
Sbjct: 357 KAAFLVKELDKENLVP 372
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 2/145 (1%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P ++ +A++S VD +Y S N T+ ++ K+ +
Sbjct: 162 PTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEV 221
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYC 295
EM S+GI P++ ++ G C + L + + LK L+G G + N L+ +C
Sbjct: 222 LREMESVGITPNVVSYNTLIAGHCNKGLLS-IATKLKNLMGKNGLEPNVVTFNSLIHGFC 280
Query: 296 ELGRVDELEEQLETLTKCNQSPEVL 320
+ G++ E + N +P +
Sbjct: 281 KEGKLHEANRFFSEMKVMNVTPNTV 305
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 3/197 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A+ M ++G PD +N+++ A G V A+ + +SS+ P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN-QLSSKGCSPVL 449
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G + G K A + TY SL+ G + D +F+ E
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+G+ P+ ++ GLC R+ DR FL +++ G K E L++ G
Sbjct: 510 FERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGM 569
Query: 300 VDELEEQLETLTKCNQS 316
E E L L CN+
Sbjct: 570 AKEALELLNEL--CNKG 584
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 4/194 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +E G PD +N +I +G++ ALS+ + M S P+ TY+ +
Sbjct: 156 AAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTIL 211
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + + +V TY LI + + + +EM G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCT 271
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G+C +LD FL + G + N +++ C GR + E+
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 307 LETLTKCNQSPEVL 320
L + + SP V+
Sbjct: 332 LADMLRKGFSPSVV 345
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 11/298 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ AM V M + PD + LI A V A+ L + M P
Sbjct: 217 SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM-RDRGCTP 272
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ ++G G +D K+ ++G NV T+ ++ + ++
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G PS+ ++ LC + L R L+ + G + N L+ +C+
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKE 392
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++D E LE + P+++ ++ ++ +++D + ++ +G S
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVT--YNTMLTALCKDGKVEDAVEILNQLSSKGCS-PVL 449
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVI 414
VI + + LD ++ K TY LV G R GK+D I
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR---EGKVDEAI 504
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 4/204 (1%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV A+ V +M G++P+ ++SL+ DVV A LF +M++ + KPN
Sbjct: 317 GKVSE---ALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMIT-KGCKPN 372
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+Y+ I+G+ +D + + I G + N +Y +LIHG + +
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR 432
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M + G +P + +L+G C + L + + + K N M LV C+ G
Sbjct: 433 NMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSG 492
Query: 299 RVDELEEQLETLTKCNQSPEVLLH 322
+ + L P V L+
Sbjct: 493 NHKDARKLFSELFVQGLQPHVQLY 516
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD FN L+ G V AL + + M + +PN TY + +
Sbjct: 287 ASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTM-TEMGVEPNVVTYSSLM 345
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+S +V K + I G N+ +Y LI+G KA+ D + + EM+ G+
Sbjct: 346 YGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLT 405
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P+ ++ G C KL + + + G
Sbjct: 406 PNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNG 438
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G KP+ +N LI + + A+ LF M+ + PN+ +Y+ I
Sbjct: 357 ARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIH-QGLTPNNVSYNTLI 415
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF LG + + G ++ TY L+ G K R + M S +
Sbjct: 416 HGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLK 475
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ + ++ +C + L G + + + ++ C+ G +DE E
Sbjct: 476 PNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEA 535
Query: 307 LETLTKCNQSPE 318
+ P+
Sbjct: 536 FRNMEADGCPPD 547
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 6/208 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG---DVVTALSLFEIMVSSEE 174
S +N+ A+ F M + P F L+ A + G DVV +LS +V
Sbjct: 67 SSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVG--- 123
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
PN T F++ F L VD A I G + T+ +LI+G K +F
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+++M++ G P + ++ GLC + LK + G + N L+
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL 243
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C V+E + + SP++ +
Sbjct: 244 CRDRLVNEALDIFSYMKAKGISPDIFTY 271
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 57/312 (18%), Positives = 119/312 (38%), Gaps = 4/312 (1%)
Query: 107 CLDEYACLIALSGKV-QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
C+ ++A L++ K+ Q + + ME G+ P+ S+ C C V
Sbjct: 91 CIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTL-SIFMNCFCQLQRVDLGFS 149
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
V +P T+ I+G +G + + +A G +V TY ++I+G
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC 209
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + + ++M G P++ +++ LC R ++ ++ G +
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF 269
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L++ C+ R E L +T N P+++ F+ ++ + ++ + +
Sbjct: 270 TYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVT--FNVLVDTFCKEGKVSEALGVLK 327
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
M + G+ ++ + LF I K +Y+ L+ GY +A
Sbjct: 328 TMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAK 387
Query: 406 LSGKLDSVINEM 417
+ + NEM
Sbjct: 388 RIDEAMQLFNEM 399
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 67/200 (33%), Gaps = 34/200 (17%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + Y LI K + + AM +F M QG+ P++ +N+LI G +
Sbjct: 367 KGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLRE 426
Query: 162 ALSLFEIMVS----------------------------------SEEYKPNSKTYDAFIS 187
A LF M + S KPN Y +
Sbjct: 427 AQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVH 486
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GN K ++ G +VQ Y ++I+G K D + M + G P
Sbjct: 487 AMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPP 546
Query: 248 SIPILEKVLEGLCARRKLDR 267
++ GL + R
Sbjct: 547 DEISYNVIIRGLLQHKDESR 566
>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
Length = 376
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + G++ D+ ++N+L+ A + + D L +F M S+ P+ TY+ I G
Sbjct: 170 VLPVLRDHGVRADAHLYNALMKANVAADDPGAVLRVFRQM-RSDGVDPDLVTYNTLIFGL 228
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G V + A A G +V TY SL++G D + EEM G P+
Sbjct: 229 ARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMNGMCVKGDALGALKLLEEMQGKGCQPNE 288
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC +KLD+ K + G K+ V+ C G V + E
Sbjct: 289 RTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKLESPAYASFVRALCRSGSVADAYE 344
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+ VF M + G+ PD +N+LI +G V A + + M ++E + P+ TY + ++
Sbjct: 203 LRVFRQMRSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAM-AAEGHLPDVVTYTSLMN 261
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G G+ K G N +TY +L+ G K + D Y+ M + G
Sbjct: 262 GMCVKGDALGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKL 321
Query: 248 SIPILEKVLEGLC 260
P + LC
Sbjct: 322 ESPAYASFVRALC 334
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 137/343 (39%), Gaps = 40/343 (11%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
F S ++ALI + + ++ ++ + M G + + Y+C+I NV
Sbjct: 240 FKPSVPVYNALIDGMCKEG--RIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVEL 297
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G + F LI C G + AL L+++M+ + +PN Y+ I
Sbjct: 298 AFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQ-DGCEPNVVAYNTLI 356
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S G+++ + +G NV TY LI G K+ D + M+S G
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR 416
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ +++ LC D+ S ++ + G N +K C GRV+ +
Sbjct: 417 PNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL 476
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
LE + P + + ++ LD ++ RM K +F +++E
Sbjct: 477 LERMQGHGCLPNITTY-----------NELLD----ALFRMNKYEEAFGLFQEIE----- 516
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
+ + TY+ ++ G+ RAG+ G+
Sbjct: 517 -----------------ARNLQPNLVTYNTVLYGFSRAGMMGE 542
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K V A +F M +G PD+ + +++ + +G + A L
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL----- 236
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +KP+ Y+A I G G ++ K + G NV +Y +I+ + +
Sbjct: 237 -AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +M G +I +++G R KL K ++ G + N L
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C G ++E + + + + P V +S +I +A S L + RM
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTT--YSILIDGFAKSGDLVGASETWNRMISH 413
Query: 351 G 351
G
Sbjct: 414 G 414
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 117/300 (39%), Gaps = 17/300 (5%)
Query: 12 KSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVP--VSQIKTTLDSVDIFAFNS 69
K R LLM ++ + N+N ++ +P +LLQ + ++KT + + F S
Sbjct: 4 KEGRSLLMKIQKPLIPFVLNSNPI-INPRDPNKQQLLQESDVLKRLKTDRNLSSVLGFFS 62
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKM--------LKGNESCLDEYACLIALSGKV 121
+ + +A + + +L E +D + + G C D + C+I +V
Sbjct: 63 AIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRV 122
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+ A+ +F + G KP ++N L+ A L L+ M + PN T
Sbjct: 123 GSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNM-KKDGLIPNVFT 181
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ + VDA +K + G + TY +++ KA D
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
PS+P+ +++G+C +++ L ++ G N ++ C G V+
Sbjct: 242 -----PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 8/290 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I G+ + ++ M+ GI +F +I G AL +F +
Sbjct: 77 YRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF-YRI 135
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
KP + Y+ + S +N Y G NV TY L+ K
Sbjct: 136 GEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRV 195
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D+ + + EM + G P ++ LC K+D + L G +K + + L
Sbjct: 196 DAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVPVYNAL 250
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C+ GR++ + L + P V+ +S II +S ++ +M +
Sbjct: 251 IDGMCKEGRIEVAIKLLGEMMDNGVDPNVV--SYSCIINSLCVSGNVELAFALFAQMFLR 308
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
G ++ + R Y+ LDL+ I+ + Y+ L+ G
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F +G PDS +N++I A G V A L E + S +E+ P+ TY + I
Sbjct: 543 ALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLI 602
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
G + N++ + I G N T+ +L+
Sbjct: 603 WGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 4/214 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y+ LI K ++ A + M + G +P+ + ++ LC + A SL E M
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMV-DVLCKNSMFDQANSLVEKM 445
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ E PN+ T++ FI G G V+ K G N+ TY L+ +
Sbjct: 446 -TLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNK 504
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++ ++E+ + + P++ VL G + L G +
Sbjct: 505 YEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLH 322
++ YC+ G+V + +E ++ + P+++ +
Sbjct: 565 MIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITY 598
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A +F +EA+ ++P+ +N+++ +G + AL LF + +V P+S TY+
Sbjct: 508 AFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT--APDSITYNTM 565
Query: 186 ISGFSSLGNV----------DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235
I + G V +M +W+ ++ TY SLI G+ + +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHP---------DIITYTSLIWGACNWMNIEEAMA 616
Query: 236 FYEEMMSLGIIPS 248
F ++ ++ GI P+
Sbjct: 617 FLDKAINQGICPN 629
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 19/247 (7%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSS 172
LI GK + + M G K D +N+LI C C G + TA F M
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI-NCFCKFGRMETAYGYFAAM-KR 286
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
E N T+ F+ F G V K +A G ++N TY LI G+ KA D
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+EM+ G+ ++ +++GLC RK+ + L+ + G + NE + L+
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406
Query: 293 CYC-------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
+ LG + E++ N+ E+ + + +I+ +LD+ + +
Sbjct: 407 GHFMNKNSEKALGLLSEMK---------NKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 346 RMGKQGL 352
+M + GL
Sbjct: 458 KMDESGL 464
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 1/217 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E + Y LI V + A + T M+ G++P+ ++ +++ AC SG V
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPE 486
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+++ + ++ S ++PN TY A I G G++D + G NVQ Y +L+
Sbjct: 487 AIAMLQKILDSG-FQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALV 545
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + + + EM+ G+ + +L+G + L + ++ G +
Sbjct: 546 DGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQ 605
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
++ + +C L + E E + +P+
Sbjct: 606 LDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM +F M +G+ + + LI +G + A+ L + MV + N TY +
Sbjct: 312 AMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR-QGVPLNVVTYTVLV 370
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G V AG N Y +LIHG ++ + EM + G+
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFL---------------------------------- 272
I + +++GLC KLD KS L
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490
Query: 273 -KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ +L G++ N L+ C+ G +DE + P V
Sbjct: 491 LQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 120/295 (40%), Gaps = 14/295 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F +Q + LI + +A + L ++D L + + Y+ +I K Q V
Sbjct: 158 GFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVM--YSTIIDALCKYQLVS 215
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F+ M +GI D +N+LI G + A+ L +MV + P+ TY
Sbjct: 216 EAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVL-KTINPDVYTYTIL 274
Query: 186 ISGFSSLGNVDAMNKW--YAANIA-----AGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ G V + Y ++ G +V TY SLI G K D +
Sbjct: 275 VDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 334
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M GI P++ +L+GL +L + + LL G+ +N ++ +C+ G
Sbjct: 335 KMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 394
Query: 299 RVDELEEQLETLTKCNQSPEVLLHF-FSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
LEE L L+K + + F F II D D E + +M +GL
Sbjct: 395 L---LEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 446
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 3/187 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
+E +GI+PD N LI C C G + S+ ++ Y P++ T + I G
Sbjct: 84 LELKGIQPDLFTLNILI-NCFCHMGQITFGFSVLAKILK-RGYPPSTVTLNTLIKGLCLK 141
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G V ++ +A GF +N Y +LI+G K D + + +++ P + +
Sbjct: 142 GQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMY 201
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ LC + + + G + L+ +C +G++ E L +
Sbjct: 202 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVL 261
Query: 313 CNQSPEV 319
+P+V
Sbjct: 262 KTINPDV 268
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGF 189
F + A G +PD+ +N + AC+ +GD+ AL++ M SE P++ +Y+ I+G
Sbjct: 146 FGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGL 205
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G K + + G + N TY ++I G +K D ++ R ++M+ G P++
Sbjct: 206 WRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNV 265
Query: 250 PILEKVLEGLCARRKLDRVKSFL 272
+L GLC ++D ++ +
Sbjct: 266 VTYNVLLSGLCRAGRMDETRALM 288
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 41/289 (14%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA+ VLE + L + Y LI +V+++ A +F M+++ I+PD +N
Sbjct: 353 KAEQVLEMLVHTGLVPTTAI---YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYN 409
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV--------DAMN 199
+LI LC +++T + + P+ +T++ I + G + D +
Sbjct: 410 ALING-LCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQD 468
Query: 200 KWYAANIAAGFSV---------------------------NVQTYESLIHGSLKARDFDS 232
K +N+ + SV N Q Y S+I +++ +
Sbjct: 469 KGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQ 528
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
E+M S G+ SI +L+GLC ++D + + L G + + ++
Sbjct: 529 AFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIIS 588
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
C G D E L+ + K + P L + ++ + R+ D+E
Sbjct: 589 ACCNKGDTDRALELLQEMHKYDIRPT--LRTYHPLLSALGSAGRVHDME 635
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/356 (18%), Positives = 133/356 (37%), Gaps = 45/356 (12%)
Query: 36 SVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
S+SS N L+ LL V + ++ + F+W+ + + ++ L +
Sbjct: 122 SLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAML 181
Query: 95 WRLDKMLKGNESCLDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
R+ + Y +IA SGK + A+ VF M +G+ P+ +N++I
Sbjct: 182 RRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSD---ALKVFDEMVDRGVAPNQITYNTMID 238
Query: 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--------------- 196
+ GD+ L + M+ + KPN TY+ +SG G +D
Sbjct: 239 GHVKGGDLEAGFRLRDQMLQ-DGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSML 297
Query: 197 --------------------AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
M + ++ G + T L++G K ++
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E ++ G++P+ I ++ G C R L S + + + + L+ C+
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK 417
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + E E+ + + K P V F+ +I Y + +L+ + M +G+
Sbjct: 418 MEMITEAEDLVMEMEKSGVDPSV--ETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + ++ QG++PD +N++I AC GD AL L + M + +P +TY +
Sbjct: 564 AEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM-HKYDIRPTLRTYHPLL 622
Query: 187 SGFSSLGNVDAMNKWY 202
S S G V M Y
Sbjct: 623 SALGSAGRVHDMECLY 638
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 4/244 (1%)
Query: 96 RLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+L MLK N + Y LI ++ N+ A + + + + + +N+LI
Sbjct: 364 QLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLC 423
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
GD+ TAL L E M++ + P+ TY ++G LGN+ +++ + G + +
Sbjct: 424 RLGDLETALKLKEDMINRGIH-PDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQ 482
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
Y + I G LK D + EEM++ G P + + GLC L+ L+
Sbjct: 483 FAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQK 542
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334
++ G + + + E G + E E + Q+P V+ ++ +I +AL+
Sbjct: 543 MIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVT--YTVLIHAHALN 600
Query: 335 DRLD 338
RLD
Sbjct: 601 GRLD 604
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 1/213 (0%)
Query: 90 QLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+ L+ + D + +G + Y L+ + K+ N+ A F M G+ PD + +
Sbjct: 429 ETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTAR 488
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
I L GD A L E M+ ++ + P+ TY+ F++G LGN++ + I G
Sbjct: 489 IVGELKLGDTAKAFKLQEEML-TKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDG 547
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
+ TY S +H ++ + +M+S G P++ ++ +LD
Sbjct: 548 HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAM 607
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
++ + G N L+ +C++ ++D+
Sbjct: 608 AYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQ 640
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 3/222 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V+ M GI+P +N+++ + G+V AL L M Y P+ T++ I
Sbjct: 221 ALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCY-PSEVTFNVLI 279
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G + AG V+ TY LI G K +EEM++ G+
Sbjct: 280 NGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVS 339
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ G C K+ + L +L + L+ +C LG + E
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399
Query: 307 LETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
L+ L N S ++ + G+ RL L L E + R
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINR 441
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M ++G P + LI A +G + A++ F + + + PN TY+ I+GF
Sbjct: 574 IFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYF-LEMQEKGVVPNVITYNVLINGF 632
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ +D K++ G N TY LI+ + + R Y +M+ I P
Sbjct: 633 CKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDS 692
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+L+ L K+ V+ +L G I+ N
Sbjct: 693 CTHGALLKKLDKDYKVQAVQFIESLILDGDRTIDAN 728
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 79/192 (41%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M G++ +N LIC G +V AL+L+E MV+ P +++ +
Sbjct: 291 AKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVT-RGVSPTVASHNTIM 349
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G + + + + ++ +Y +LI+G + + +E+ +
Sbjct: 350 YGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLS 409
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+I +++GLC L+ + ++ G + LV C+LG + +E
Sbjct: 410 FNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEF 469
Query: 307 LETLTKCNQSPE 318
+ + +P+
Sbjct: 470 FDEMLHVGLAPD 481
>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
Length = 647
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 7/215 (3%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
F + F DA++ S+P A L L++ +++ E + Y + + K +++
Sbjct: 84 FGNKLFEHDAVVILNNMSNPDTALLALKFFRERLEFNREVVV--YNVTMKVLRKCRDLNK 141
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLI-CACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+F M + +KPD+ F+++I CA LC+ D A+ FE M S P+ T+
Sbjct: 142 VEKLFDEMIERAVKPDNVTFSTIISCARLCNLAD--KAVEWFEKM-PSFGLDPDDVTFST 198
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I + +GNV+ Y + ++ T+ +LI + +FD YEEM +LG
Sbjct: 199 MIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALG 258
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
+ P++ I +L+ + R+ + K F + ++ G
Sbjct: 259 VKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSG 293
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
++ +I G+V NV A+ ++ + + D+ F++LI SG+ L+++E M
Sbjct: 196 FSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEM- 254
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPN Y+ + K+Y I +G S + TY +L+ +AR
Sbjct: 255 KALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYG 314
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-LDRVKSFLKFLLGGGWKINENMAQK 289
+ + Y+EM + ++ + +L +CA +D + + G +
Sbjct: 315 EDTIKIYKEMKEKELSLNVLLYNTIL-AMCADLGFVDEAIEIFEDMKNSGISPDSWTFSS 373
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
++ G+V E E L + + P + + + +I+ Y + R+DDV + R+
Sbjct: 374 MITMSSCCGKVSEAENMLNEMFEAGFQPNIFV--LTSLIQCYGKAQRIDDVVKTFNRL 429
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)
Query: 94 EWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
+WRLD ++ LI + N ++V+ M+A G+KP+ ++N+L+ A
Sbjct: 223 KWRLDTTT---------FSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAM 273
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
+ A ++ ++ S P+ TY A + + + K Y S+N
Sbjct: 274 GRARRPWQAKKFYQDIIDSG-LSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLN 332
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
V Y +++ D +E+M + GI P ++ K+ ++ L
Sbjct: 333 VLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLN 392
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ G++ N + L++CY + R+D++ + L + +P+
Sbjct: 393 EMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPD 437
>gi|224077264|ref|XP_002305195.1| predicted protein [Populus trichocarpa]
gi|222848159|gb|EEE85706.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y I K + + A + ME G+KP FN L+ C +G V LS + M+
Sbjct: 341 YTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFLLEGCAKAGRVEETLSYCKKMM 400
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ ++ + + +V N+ + GF + TY +LI G K
Sbjct: 401 EMG-HVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGFLADEITYSNLISGYAKNNQI 459
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + Y EM + P + +++GLC KL+ + +L+ ++G E++ + L
Sbjct: 460 QEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAEKYLRIMIGRSLNPREDVYEAL 519
Query: 291 VKCYCELG 298
+K Y E G
Sbjct: 520 IKVYFEKG 527
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/411 (20%), Positives = 169/411 (41%), Gaps = 48/411 (11%)
Query: 20 PLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDI------FAFNSSQFS 73
P +F L+ ++ +S + S+PL+ LL ++ + D+ F S S
Sbjct: 143 PTKF--LVLDSLLSSYKIIISSPLVFDLLVQAYAKQRMFEIGFDVCCRLEEHRFTLSLIS 200
Query: 74 WDALITSLQSSSPKK-AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ---NVPFAMH 129
++ LI +Q S A + E L + NE+ ++ + GK+Q N+ +H
Sbjct: 201 FNTLIHVVQKSDKSPLAWKIYEHMLHRRTYPNEATIESMISALCKEGKLQTIVNMLDKIH 260
Query: 130 --------------VFTSMEAQGIKP---------------DSAVFNSLICACLCSGDVV 160
VF +E ++P D+ ++ ++ A + G++
Sbjct: 261 GKRCSPVVIVNTCLVFRILEEGRVEPGLALLKMMLRKNMILDTVAYSLIVYAKVKLGNLN 320
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
+A+ ++E M+ + NS Y +FI + ++ N+ G T+ L
Sbjct: 321 SAMQVYEEMLK-RGFNANSFVYTSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFL 379
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ G KA + + ++MM +G +PS+ +++ LC + R L LL G+
Sbjct: 380 LEGCAKAGRVEETLSYCKKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGF 439
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
+E L+ Y + ++ E+ + + + SP ++ F+ +I+ +L++
Sbjct: 440 LADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSPGLM--GFTSLIKGLCNCGKLEEA 497
Query: 341 EYSVGRMGKQGLSFKSAEDV-EMVICSYFRCAAYDR-LDLFLDHIKGSYKL 389
E + M G S EDV E +I YF R L+L+ + + KL
Sbjct: 498 EKYLRIM--IGRSLNPREDVYEALIKVYFEKGDKRRALNLYNEMVSKGLKL 546
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 118/317 (37%), Gaps = 46/317 (14%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSS 172
LI + V F + V M +G P++ F SL+ LC G ++ A L MV
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKG-LCLGSRISEATGLLRKMVRM 191
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA--NIAAGFSVNVQT----YESLIHGSLK 226
Y+PN TY ++G GN K + N GF V ++ Y ++I K
Sbjct: 192 G-YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCK 250
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D + EM GI P + ++ G+C + + K ++ G N
Sbjct: 251 DGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVT 310
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ C+ G+++E L+ + + +SP+ ++ +I + L R+DD
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFT--YNTLIDGFCLEGRIDDAR----- 363
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
DLF+ + +Y+ L+ GY ++G
Sbjct: 364 ------------------------------DLFVSMESKGIETDAVSYNVLINGYCKSGR 393
Query: 407 SGKLDSVINEMKFAEYM 423
+ + EM E M
Sbjct: 394 MVEAKKLYREMMCKEIM 410
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M +G+ P+ FN LI A +G + A L ++M+ E P++ TY+ I
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNTLI 350
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G +D + + + G + +Y LI+G K+ + Y EMM I+
Sbjct: 351 DGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIM 410
Query: 247 PSIPILEKVLEGL 259
P++ +L GL
Sbjct: 411 PTVITYNTLLTGL 423
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GKV++ A ++F M+ + P+S +N L+ + + A+ LF + + +++P+
Sbjct: 427 GKVRD---AWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYL-ENHDFQPS 482
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ ++ I G ++ + + G NV TY +IHG K+ ++ +
Sbjct: 483 IQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFL 542
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
M G P++ ++ G C ++ +V L+
Sbjct: 543 GMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQ 577
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 39/237 (16%)
Query: 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176
L G++ + A +F SME++GI+ D+ +N LI SG +V A L+ M+ +E
Sbjct: 355 LEGRIDD---ARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMC-KEIM 410
Query: 177 PNSKTYDAFISGFSSLGNV-DAMNKWYAANIA---------------------------- 207
P TY+ ++G G V DA N + +
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470
Query: 208 ------AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
F ++Q + LI G KAR + + + G+ P++ ++ GLC
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+L+ K + G N L++ +C+ + ++ E L+ + + + SP+
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPD 587
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 6/171 (3%)
Query: 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
ESC Y L+ K ++ AM +F +E +P +FN LI + + A
Sbjct: 447 ESC--TYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARE 504
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
LF +S E +PN TY I G G ++ + G + N+ T+ +L+ G
Sbjct: 505 LFN-RLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ + V +EM P + V++ L K ++ + +L L
Sbjct: 564 CQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLL---SKDEKYREYLHLL 611
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 11/233 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF + P + FN+L+ A +SL++ M S P+ T + I
Sbjct: 76 AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRM-SLIGLAPDFITLNILI 134
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ + +L VD + G S N T+ SL+ G +M+ +G
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYR 194
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-------GR 299
P++ +L GLC + +L G + LV CYC + G
Sbjct: 195 PNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLV-CYCTIIDSLCKDGL 253
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+D+ +E + SP+V+ +S II + R + + M +G+
Sbjct: 254 IDKGKELFLEMKGRGISPDVVA--YSSIIHGMCHTGRWEGAKGLFNEMVDEGV 304
>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g38730-like [Brachypodium distachyon]
Length = 599
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 7/240 (2%)
Query: 73 SWDALITSL--QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+W+ +I L + + AQL R D + E Y L+ ++ +V A+ +
Sbjct: 253 TWNTVIHGLCKEGRMKEAAQL----RTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKL 308
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
MEA G+ P A +N++I G + L M + + + T + I+ ++
Sbjct: 309 REEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEM-DGRKVQADHVTCNTLINSYA 367
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++ + K + +G ++ TY++LIHG KA++ D EMM G P+
Sbjct: 368 KRGDMTSACKVKKRMMESGLQLDQFTYKALIHGFCKAKELDEAKEALFEMMGRGFSPNYS 427
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ +++G C + D V L+ G ++++ + L++ C+ G VD ++ L +
Sbjct: 428 VFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDKSVYRSLIRRLCKKGLVDLAQKVLHQM 487
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 1/188 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ + K ++ A + T M+A G+ D FN++I + G A+ + E M
Sbjct: 184 YNAMLHVCLKARDALRAEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERM- 242
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P+ T++ I G G + + IAA + TY +L+ G + D
Sbjct: 243 QDEGVEPDIVTWNTVIHGLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDV 302
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ EEM + G++P + ++ LC K+ V L + G + + L
Sbjct: 303 GEAVKLREEMEAGGMVPGVATYNAIIRKLCEDGKMKEVNGLLSEMDGRKVQADHVTCNTL 362
Query: 291 VKCYCELG 298
+ Y + G
Sbjct: 363 INSYAKRG 370
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 1/187 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ + M+ + ++ D N+LI + GD+ +A + + M+ S + + TY A I GF
Sbjct: 343 LLSEMDGRKVQADHVTCNTLINSYAKRGDMTSACKVKKRMMESG-LQLDQFTYKALIHGF 401
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+D + + GFS N + L+ G K + D+V +E++ G+ P
Sbjct: 402 CKAKELDEAKEALFEMMGRGFSPNYSVFSWLVDGFCKKNNTDAVLLIPDELIKRGLPPDK 461
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ ++ LC + +D + L + G G +++ + L + G+V + L
Sbjct: 462 SVYRSLIRRLCKKGLVDLAQKVLHQMQGKGLEVDCLVYATLAYAHLTAGKVAAASDILNE 521
Query: 310 LTKCNQS 316
+ + S
Sbjct: 522 MARKQMS 528
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 87/252 (34%), Gaps = 74/252 (29%)
Query: 114 LIALSGKVQNVPF-AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ALS P A VF M A+G+ PD+ +L+ TAL+ + ++
Sbjct: 116 LLALSHSHSARPHDAARVFDQMRARGLAPDAHACTALL----------TALARARMTATA 165
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--- 229
+ F+ +G AG ++N Y +++H LKARD
Sbjct: 166 HKV-------------FNEMGR-------------AGVAMNTHVYNAMLHVCLKARDALR 199
Query: 230 -------------------FDSVDRFY-------------EEMMSLGIIPSIPILEKVLE 257
F++V Y E M G+ P I V+
Sbjct: 200 AEGLMTRMDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQDEGVEPDIVTWNTVIH 259
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
GLC ++ ++ + + LV YC +G V E + E + P
Sbjct: 260 GLCKEGRMKEAAQLRTDMIAAAVEPDTVTYTTLVDGYCRIGDVGEAVKLREEMEAGGMVP 319
Query: 318 EVLLHFFSGIIR 329
V ++ IIR
Sbjct: 320 GVAT--YNAIIR 329
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 8/295 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + +A G P +N+++ A + S ++ A ++F+ M+ S+ PN TY+
Sbjct: 153 ALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQ-VSPNVFTYNIL 211
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I GF GN+D +++ G NV TY +LI G K R D M G+
Sbjct: 212 IRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGL 271
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ V+ GLC ++ + L + G+ ++E L+K YC+ G +
Sbjct: 272 EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC 365
+ + SP V+ ++ +I + ++ + +M +GL E +
Sbjct: 332 MHAEMLRHGLSPSVIT--YTSLIHSMCKAGNMNRATEFLDQMRVRGLC--PNERTYTTLV 387
Query: 366 SYFRCAAY--DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F Y + + + I + TY+ L+ G+ AG +V+ +MK
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMK 442
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 5/268 (1%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
F+++ LI + L R++K KG + Y LI K++ + +
Sbjct: 206 FTYNILIRGFCLAGNLDVALRFFDRMEK--KGCLPNVVTYNTLIDGYCKLRKIDDGFELL 263
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
SM +G++P+ +N +I LC + +S ++ Y + TY+ I G+
Sbjct: 264 RSMALKGLEPNLISYNVVING-LCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCK 322
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
GN +A + G S +V TY SLIH KA + + F ++M G+ P+
Sbjct: 323 EGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERT 382
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+++G + ++ LK ++ G+ + L+ +C G++ + LE +
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMK 442
Query: 312 KCNQSPEVLLH--FFSGIIRLYALSDRL 337
+ +P+V+ + SG R Y + + L
Sbjct: 443 EKGLTPDVVSYSTVLSGFCRSYDVDEAL 470
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 5/247 (2%)
Query: 108 LDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LDE Y LI K N A+ + M G+ P + SLI + +G++ A
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEF 367
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+ M PN +TY + GFS G ++ + I GFS +V TY +LI+G
Sbjct: 368 LDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHC 426
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
A E+M G+ P + VL G C +D + ++ G K +
Sbjct: 427 IAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTI 486
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L++ +CE R E + + + + P+ ++ +I Y + L
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFT--YTALINAYCMEGDLQKAIQLHN 544
Query: 346 RMGKQGL 352
M ++G+
Sbjct: 545 EMVEKGV 551
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/382 (19%), Positives = 149/382 (39%), Gaps = 22/382 (5%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ +I L ++ ++ + +++ LI LV+ + + G + Y
Sbjct: 291 MKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLSPSVITY 348
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
LI K N+ A M +G+ P+ + +L+ G + A + + M+
Sbjct: 349 TSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID 408
Query: 172 SEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY+A I+G G VDA+ G + +V +Y +++ G ++ D
Sbjct: 409 NG-FSPSVVTYNALINGHCIAGKMVDAIAVLEDMK-EKGLTPDVVSYSTVLSGFCRSYDV 466
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R +M++ GI P +++G C +R+ +L G +E L
Sbjct: 467 DEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTAL 526
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSG-------------IIRLYALSD 335
+ YC G + + + + + P+V+ + +G +++L+
Sbjct: 527 INAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEES 586
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYD 395
DV Y + FKS + C D+ +F ++ ++K Y+
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ--VFESMLEKNHKPDGTAYN 644
Query: 396 FLVAGYRRAGLSGKLDSVINEM 417
++ G+ R G K S+ EM
Sbjct: 645 VMIHGHCRGGDIRKAYSLYKEM 666
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M G+ PD + +LI A GD+ A+ L MV + P+ TY I
Sbjct: 504 ACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVE-KGVLPDVVTYSVLI 562
Query: 187 SGFSSLGNVDAMNK-----WYAANIAAGFS----------VNVQTYESLIHGSLKARDFD 231
+G + + +Y ++ + + + ++ SLI G
Sbjct: 563 NGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
D+ +E M+ P ++ G C + + S K ++ G+ ++ LV
Sbjct: 623 EADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALV 682
Query: 292 KCYCELGRVDEL 303
K + G+V+EL
Sbjct: 683 KTLHKEGKVNEL 694
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ M ++G PD +N+++ A G V A+ L +SS+ P TY+ I
Sbjct: 175 AIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLN-QLSSKGCSPVLITYNTVI 233
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G S +G D + G +V TY SLI G + + +F+ ++ G+
Sbjct: 234 DGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVK 293
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
P+ ++ GLC ++ DR FL +++ G K E
Sbjct: 294 PNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTE 331
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + T M +G P FN LI G + A+ + E M + PNS +Y+ +
Sbjct: 105 AEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM-PTHGCTPNSLSYNPLL 163
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF +D ++ ++ G ++ TY +++ K D+ ++ S G
Sbjct: 164 HGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCS 223
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + V++GL K D+ L + G G K + L+ G+V+E
Sbjct: 224 PVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEE 279
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 5/266 (1%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
PD + LI A V A+ L + M S KP+ TY+ ++G G +D K
Sbjct: 14 PDVITYTILIEATCAESGVGQAMKLLDEM-GSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + + G NV T+ ++ + ++ EM+ G PS+ ++ LC
Sbjct: 73 FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC 132
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ L R L+ + G N L+ +C+ ++D + LE + P+++
Sbjct: 133 RKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIV 192
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
++ ++ ++D + ++ +G S VI + D+ L
Sbjct: 193 T--YNTMLTALCKDGKVDAAVELLNQLSSKGCS-PVLITYNTVIDGLSKVGKTDQAVELL 249
Query: 381 DHIKG-SYKLRRATYDFLVAGYRRAG 405
++G K TY L+AG R G
Sbjct: 250 HEMRGKGLKPDVITYSSLIAGLSREG 275
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ ++T+L A + L +L KG L Y +I KV A+ +
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSS--KGCSPVLITYNTVIDGLSKVGKTDQAVELLH 250
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+KPD ++SLI G V A+ F V KPN+ TY++ + G
Sbjct: 251 EMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHD-VEGFGVKPNAFTYNSIMFGLCKA 309
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
D + A I+ G +Y LI G
Sbjct: 310 QQTDRAIDFLAYMISKGCKPTEVSYTILIEG 340
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
+ +F M GI P+ V++SLI G + A++LF+ MVS + K N TY++ I
Sbjct: 98 GLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVS-QGIKANVITYNSLI 156
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + ++ + G +V T+ +LI K + +E M+ G
Sbjct: 157 HASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEA 216
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P+I +L GLC ++D + ++ G KI+ L+ YC G+ +E
Sbjct: 217 PNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEE 272
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI +V + A+++F M +QGIK + +NSLI A G A F MV
Sbjct: 117 YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E P+ T+ I S G V K + I G + N+ TY SL++G
Sbjct: 177 -GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQM 235
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R +E M+ GI + ++ G C K + + + + + L
Sbjct: 236 DHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTIL 295
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
+K + GR+ +E + C QSP
Sbjct: 296 LKALYQNGRIRTAKELFNNMQICGQSP 322
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 2/227 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D+M+ +G ++ + Y LI S + A F+ M +GI PD F +LI
Sbjct: 137 FDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSK 196
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G V A +FE+M+ E PN TY++ ++G +D + + + G ++V
Sbjct: 197 KGKVQEAYKIFELMIKQGE-APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVI 255
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+Y +LI+G + + + +M + PSI +L+ L ++ K +
Sbjct: 256 SYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
G + + L+ C+ G ++E + +L P + ++
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIY 362
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 93/200 (46%), Gaps = 4/200 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK + AM +F M+ + + P + L+ A +G + TA LF M + P
Sbjct: 267 SGKTEE---AMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ-SP 322
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY + G G ++ + + + + +++ Y LI G +AR ++S +
Sbjct: 323 SLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIF 382
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+E+ ++G++P+I ++ GLC KL + + G + +E +++ + +
Sbjct: 383 DEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQE 442
Query: 298 GRVDELEEQLETLTKCNQSP 317
+V + E L+ + + N SP
Sbjct: 443 NQVQKAMEFLKRMREKNFSP 462
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 4/208 (1%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ GKV + A+ +F M G + D ++ LI A + A+ L M+S E
Sbjct: 19 MCFEGKVMD---ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLS-EI 74
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
N TY I G K + I G NV Y SLI+G +
Sbjct: 75 CSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAV 134
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++EM+S GI ++ ++ C ++G G + L+
Sbjct: 135 NLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHL 194
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G+V E + E + K ++P ++ +
Sbjct: 195 SKKGKVQEAYKIFELMIKQGEAPNIVTY 222
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 4/242 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M++ G + Y LI G+ + AM+VF M+ G +PD + +LI
Sbjct: 382 LDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAK 441
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + A+ +++ M + P++ TY I+ G++ A ++ + + G + N+
Sbjct: 442 AGFLDIAMDMYQRMQEAG-LSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLV 500
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +I KAR++++ + Y +M + G P V+E L L+ + +
Sbjct: 501 TFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM 560
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYAL 333
W +E + LV + + G VD+ + + + + P V S +R++ +
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620
Query: 334 SD 335
S+
Sbjct: 621 SE 622
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRL--DKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
F++ +I L K L RL + + +G L + +IAL K +N A+
Sbjct: 465 FTYSVIINCLG----KAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALK 520
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
++ M+ G +PD ++ ++ G + A +F M + + P+ Y + +
Sbjct: 521 LYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM-QRKNWVPDEPVYGLLVDLW 579
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
GNVD +WY A + AG NV T SL+ L+ + M++LG+ PS+
Sbjct: 580 GKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 3/210 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIM 169
Y LI + K + AM ++ M+ G+ PD+ + S+I CL +G + A LF M
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTY-SVIINCLGKAGHLPAAHRLFCEM 490
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + PN T++ I+ + N + K Y AGF + TY ++
Sbjct: 491 VG-QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGF 549
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ + + EM +P P+ +++ +D+ + + +L G + N
Sbjct: 550 LEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNS 609
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ + + R+ E L+++ P +
Sbjct: 610 LLSTFLRVHRMSEAYNLLQSMLALGLHPSL 639
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 117/297 (39%), Gaps = 41/297 (13%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ AM F M+ G KP ++ FN+LI +G+ + L E+M E +PN +TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTY 216
Query: 183 DAFISGFSSLGNVDAMNKWYAAN--IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+ + + + N+ M W +A+G + TY ++ + + + EM
Sbjct: 217 NVLVRAWCNKKNI--MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM 274
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + P+ ++ G C K+ F+ + G + N + L+K + +
Sbjct: 275 QNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDR 334
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
D + E L + + P+V+ FS I+ ++ + +D
Sbjct: 335 DGVNEVLTLMEEFGVKPDVIT--FSTIMNAWSAAGFMD---------------------- 370
Query: 361 EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+C ++F D +K + Y L GY RAG K + ++N M
Sbjct: 371 --------KCR-----EIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAM 414
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 7/214 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I + G K + A+ M+ G++P+ VFNSLI + D V +
Sbjct: 282 NERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFI---DAVDRDGVN 338
Query: 167 EIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E++ EE+ KP+ T+ ++ +S+ G +D + + + A + Y L G
Sbjct: 339 EVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGY 398
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A + + + M+ G P++ I ++ G C+ +++ + + G N
Sbjct: 399 VRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNL 458
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ L+ Y E + + EE L+ + + N PE
Sbjct: 459 KTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 42/286 (14%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
+ P+++Q +LE D+ ++ N L Y L+ +N+ A +V M A G++P
Sbjct: 190 AGEPEESQKLLELMSQDENVRPN---LRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQP 246
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D+ +N++ A +G+ A + M +S +PN +T I G+ G + ++
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSN-VQPNERTCCIIIGGYCKEGKIKEALQF 305
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
G N+ + SLI G + A D D V+ M G+ P + ++ A
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 262 RRKLDRVKSF-----------------------------------LKFLLGGGWKINENM 286
+D+ + L ++ G+ N +
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVI 425
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ +C GR++ + E + +C +P L F +I Y
Sbjct: 426 FTTIINGWCSAGRMEYAIKIFEKMCECGIAPN--LKTFETLIWGYG 469
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M I+PD+ V++ L + +G+ A + M+ S + PN + I+G+
Sbjct: 375 IFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FHPNVVIFTTIINGW 433
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ K + G + N++T+E+LI G +AR + + M + P
Sbjct: 434 CSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEK 493
Query: 250 PILEKVLEGLCA---RRKLDRVKSFLK 273
L V E A +++ +R+ S +K
Sbjct: 494 TTLLLVAEAWRATGLKKEANRILSAVK 520
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 134/298 (44%), Gaps = 15/298 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V++ M G+ P+ A +N +I A G++ AL L+ M S + P+S T + +
Sbjct: 571 AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEM-KSHKIMPSSITCNTLV 629
Query: 187 SGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G S G ++ AMN ++ G N+ + L++ S K+ ++V + +E+++ +G+
Sbjct: 630 VGLSEAGEIEKAMNVLNEMSVM-GIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGL 688
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ ++ C R + S LK+++ G+ + L++ YCE V +
Sbjct: 689 KINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALA 748
Query: 306 QLETLTKCNQSPEVLLH----FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
+ SP ++ + L A D L D +M + GL+ A +
Sbjct: 749 TYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFD------KMKENGLN-PDASTYD 801
Query: 362 MVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I Y + + + L+ + + + + +TY+ L++ + + G + ++NEM+
Sbjct: 802 TLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQ 859
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 132/340 (38%), Gaps = 55/340 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSG-------------------DVVTALSLFE 167
A + M+ G+ P+ + +LI + +G D+V +L +
Sbjct: 292 AQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVD 351
Query: 168 IMVSSEEYK---------------PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+ S + K PNS TY A I G+ +G+++ + +
Sbjct: 352 GLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINP 411
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NV TY S+I+G K D ++M+ IIP+ + +++G C K +
Sbjct: 412 NVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLY 471
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH------FFSG 326
+ G K+N + LV R+DE EE L+ +T S +LL G
Sbjct: 472 NEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVT----SRGLLLDHVNYTSLMDG 527
Query: 327 IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS 386
+ S L+ VE M ++ + F ++I Y+ ++ I+
Sbjct: 528 FFKAGKESAALNMVE----EMTEKSIPFDVVT-YNVLINGLLEHGKYEAKSVYSGMIEMG 582
Query: 387 YKLRRATYDFLVAGYRRAGLSGKLDSVI---NEMKFAEYM 423
+ATY+ ++ Y + G+LD+ + NEMK + M
Sbjct: 583 LAPNQATYNIMIKAYCK---QGELDNALELWNEMKSHKIM 619
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +V A+ +T M +G+ P+ +N L+ L +G + LF+ M
Sbjct: 730 YNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKM- 788
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TYD ISG+ +GN + Y +A GF TY LI K
Sbjct: 789 KENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKM 848
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK---LDR 267
D EM G+ PS + ++ G C K LDR
Sbjct: 849 DQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDR 888
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 7/235 (2%)
Query: 83 SSSPKKAQLVLEWR---LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
SS KA VL+ +D LK N+ + Y LI + +++ A V M G
Sbjct: 667 SSKSGKANAVLQMHEQLVDMGLKINQ---EAYNNLIVVFCRLRMTKKATSVLKYMIRDGF 723
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
D+ +N+LI S V AL+ + M++ E PN TY+ + G G + +
Sbjct: 724 VADTVTYNALIRGYCESSHVKKALATYTQMLN-EGVSPNIVTYNLLLGGLLGAGLMAERD 782
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + G + + TY++LI G K + R Y EM++ G +P ++
Sbjct: 783 ELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDF 842
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314
K+D+ + L + G + + L+ +C L + +L+ L+ + + +
Sbjct: 843 AKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTD 897
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 76/380 (20%), Positives = 137/380 (36%), Gaps = 73/380 (19%)
Query: 105 ESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
++C D C I + G ++ + + ++ + G D FN+LI +G++ A
Sbjct: 107 DTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLA 166
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAG------------ 209
L L E M E + +Y+ I+GF G D A + + + + G
Sbjct: 167 LDLVERM-RKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDR 225
Query: 210 --------FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
++ TY ++I K + YEEM+ G +P + ++ GLC
Sbjct: 226 IKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCK 285
Query: 262 RRKLDRVKSFLK---------------------FLLGGGWK--------INENMAQKLVK 292
+L + L+ F G W+ + M LV
Sbjct: 286 DGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVM 345
Query: 293 CYC------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
C + + E E+ L+K N P + ++ +I Y ++ VE +
Sbjct: 346 CTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSIT--YTALIDGYCKVGDMERVESLLQE 403
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDR----LDLFLDH--IKGSYKLRRATYDFLVAG 400
M ++ ++ + +I Y + D + LD I +Y Y L+ G
Sbjct: 404 MEEKHIN-PNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAY-----VYAILIDG 457
Query: 401 YRRAGLSGKLDSVINEMKFA 420
Y +AG + NEMK +
Sbjct: 458 YCKAGKQEIATDLYNEMKLS 477
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 20/243 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M QG PD++ ++ ++ + + A LFE M + TY +
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMV 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ KW+ G + NV TY +LIH LKA+ + +E M+S G +
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----------------- 289
P+I +++G C ++++ + + G + +M K
Sbjct: 586 PNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGA 645
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L+ +C+L RV+E + L+ ++ P ++ + +I +LD+ + M +
Sbjct: 646 LLDGFCKLHRVEEARKLLDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKAEMSE 703
Query: 350 QGL 352
G
Sbjct: 704 HGF 706
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 22/261 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +A +F +M ++G P+ +++LI +G + A +FE M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMC 615
Query: 171 SSEEY----------------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
S++ +PN Y A + GF L V+ K A G N
Sbjct: 616 GSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQ 675
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
Y++LI G K D EM G ++ +++ ++ D L
Sbjct: 676 IVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 735
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+L N + +++ C++G+ DE + ++ + + P V+ + G R+
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795
Query: 333 LSDRLDDVEYSVGRMGKQGLS 353
+ L+ +E RMG +G++
Sbjct: 796 IETCLELLE----RMGSKGVA 812
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 5/209 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + + LD++ + +Q +DALI L + +AQ E + + G + L
Sbjct: 656 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ---EVKAEMSEHGFPATLYT 712
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV+ A V + M P+ ++ +I G A L ++M
Sbjct: 713 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM- 771
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY A I GF +G ++ + + G + N TY LI K
Sbjct: 772 EEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 831
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EEM KV+EG
Sbjct: 832 DVAHNLLEEMKQTHWPTHAAGYRKVIEGF 860
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 13/210 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G P +FNSL+ A SGD A L + MV + P Y+ I
Sbjct: 359 VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG-HTPGYVVYNILIG-- 415
Query: 190 SSLGNVDAMN--------KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
S G+ D+++ K Y+ +A G +N S A ++ EM+
Sbjct: 416 SICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G IP KVL LC K++ + + GG + +V +C+ G ++
Sbjct: 476 GQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ + + + +P V+ ++ +I Y
Sbjct: 536 QARKWFNEMREVGCTPNVVT--YTALIHAY 563
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M A P+ +++L+C CL + + +M+ Y P+ K +++ +
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY-PSPKIFNSLV 379
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI------HGSLKARDFDSVDRFYEEM 240
+ + G+ K + G + Y LI SL + ++ Y EM
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEM 439
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ G++ + + LC+ K ++ S ++ ++G G+ + + K++ C ++
Sbjct: 440 LATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKM 499
Query: 301 D 301
+
Sbjct: 500 E 500
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 10/181 (5%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P + +N LI A L D + + SL +S + + T + +G
Sbjct: 232 RPSRSTYNCLIQAFL-KADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVG------ 284
Query: 200 KWYAANI---AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
KW A F + Y LI G +A F+ F M + +P++ +L
Sbjct: 285 KWREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G +++L R K L ++ G + + LV YC G + L+ + KC +
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHT 404
Query: 317 P 317
P
Sbjct: 405 P 405
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 117/297 (39%), Gaps = 41/297 (13%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ AM F M+ G KP ++ FN+LI +G+ + L E+M E +PN +TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTY 216
Query: 183 DAFISGFSSLGNVDAMNKWYAAN--IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+ + + + N+ M W +A+G + TY ++ + + + EM
Sbjct: 217 NVLVRAWCNKKNI--MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM 274
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + P+ ++ G C K+ F+ + G + N + L+K + +
Sbjct: 275 QNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDR 334
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
D + E L + + P+V+ FS I+ ++ + +D
Sbjct: 335 DGVNEVLTLMEEFGVKPDVIT--FSTIMNAWSAAGFMD---------------------- 370
Query: 361 EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+C ++F D +K + Y L GY RAG K + ++N M
Sbjct: 371 --------KCR-----EIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAM 414
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 7/214 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I + G K + A+ M+ G++P+ VFNSLI + D V +
Sbjct: 282 NERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFI---DAVDRDGVN 338
Query: 167 EIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E++ EE+ KP+ T+ ++ +S+ G +D + + + A + Y L G
Sbjct: 339 EVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGY 398
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A + + + M+ G P++ I ++ G C+ +++ + + G N
Sbjct: 399 VRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNL 458
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ L+ Y E + + EE L+ + + N PE
Sbjct: 459 KTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 42/286 (14%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
+ P+++Q +LE D+ ++ N L Y L+ +N+ A +V M A G++P
Sbjct: 190 AGEPEESQKLLELMSQDENVRPN---LRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQP 246
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D+ +N++ A +G+ A + M +S +PN +T I G+ G + ++
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSN-VQPNERTCCIIIGGYCKEGKIKEALQF 305
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
G N+ + SLI G + A D D V+ M G+ P + ++ A
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 262 RRKLDRVKSF-----------------------------------LKFLLGGGWKINENM 286
+D+ + L ++ G+ N +
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVI 425
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ +C GR++ + E + +C +P L F +I Y
Sbjct: 426 FTTIINGWCSAGRMEYAIKIFEKMCECGIAPN--LKTFETLIWGYG 469
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M I+PD+ V++ L + +G+ A + M+ S + PN + I+G+
Sbjct: 375 IFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FHPNVVIFTTIINGW 433
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ K + G + N++T+E+LI G +AR + + M + P
Sbjct: 434 CSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEK 493
Query: 250 PILEKVLEGLCA---RRKLDRVKSFLK 273
L V E A +++ +R+ S +K
Sbjct: 494 TTLLLVAEAWRATGLKKEANRILSAVK 520
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 15/247 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI GK +P AM F M+ +G KPD +NSLI A +G + AL L + M
Sbjct: 362 FNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQM- 420
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA------AGFSVNVQTYESLIHGS 224
E P+ TY+ ++ N+W + G NV TY +L+
Sbjct: 421 QERECVPSLHTYNIILNALG------WHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSY 474
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++ + + ++M S G+ PS + + R ++ K + G ++N
Sbjct: 475 GTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNL 534
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
+M L+ + G+ E + + + SP+V+ ++ +++ +++LD V
Sbjct: 535 SMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVT--YTTLMKALIKAEQLDQVPDVY 592
Query: 345 GRMGKQG 351
+M + G
Sbjct: 593 EQMVRAG 599
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 10/238 (4%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
IA++G K V AM +F ++ G+ P +N+++ C + TAL L M S
Sbjct: 83 IAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGS 142
Query: 173 EEYKPNSKTYD-AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
++P++ Y F + VD +++ A G ++ + Y +I+ +A D D
Sbjct: 143 G-FQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPD 201
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ M + ++P + ++E L R+LD ++ + +KIN L+
Sbjct: 202 KAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALL 261
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG--IIRLYALSDRLDDVEYSVGRM 347
Y L EQ+E L + + + L FS +I Y+ + RLD + + M
Sbjct: 262 SAYTR----KSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNM 315
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 79/192 (41%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ + + A+ + M G +PD+ + + AC V +S +
Sbjct: 116 YNAIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANI 175
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + ++K Y+ I+ + G+ D ++ A +V++Y SLI + R
Sbjct: 176 EQEGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRL 235
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + Y EM S ++ L +L + L++V+ ++ G K++ L
Sbjct: 236 DDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLL 295
Query: 291 VKCYCELGRVDE 302
+ Y GR+D+
Sbjct: 296 IDAYSRAGRLDQ 307
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M KG + + Y L+ G + A M++QG++P ++V+ +L +
Sbjct: 452 LDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAK 511
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
G A+ +F+ M + + N + I+ F G + + G S +V
Sbjct: 512 RGLCEQAMEVFKSM-EKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVV 570
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
TY +L+ +KA D V YE+M+ G P
Sbjct: 571 TYTTLMKALIKAEQLDQVPDVYEQMVRAGCTP 602
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 1/207 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A F +M+ + + ++ +++ L+ A + + L + M
Sbjct: 292 YGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMY 351
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+S KPN ++ I + G + + +A GF +V T+ SLI +A
Sbjct: 352 ASN-IKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLI 410
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++M +PS+ +L L + + L + G N L
Sbjct: 411 TEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTL 470
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSP 317
V Y R E E L+ + P
Sbjct: 471 VDSYGTSKRYREASEYLKQMKSQGLQP 497
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 141 PDSAV-FNSLICACLCSGDVVTALSLFEIMV---------------SSEEYKPNSKTYDA 184
PD A + L+ AC DV + SL E +V S+ YK N +T +A
Sbjct: 200 PDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNA 259
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+S ++ ++ + K AG ++ +Y LI +A D + M
Sbjct: 260 LLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVEN 319
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
+ + I +++ R+ D LK + K N+ + L+ Y + GR+ +
Sbjct: 320 VPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAM 379
Query: 305 EQLETLTKCNQSPEVL 320
+ K P+V+
Sbjct: 380 RTFAQMDKEGFKPDVV 395
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 10/221 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPNSKTYDA 184
A V M G PD A L+ G+V A+ L E M EEY N+ TY++
Sbjct: 116 ATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKM---EEYGYPTNTVTYNS 172
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G GN+ + + G NV TY L+ + K R D R +E+++ G
Sbjct: 173 LVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKG 232
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P++ +L GLC + + F + L G+ N L++ C GR ++ +
Sbjct: 233 GKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAK 292
Query: 305 EQLETLTKCNQSPEVL-LHFFSGIIRLYALSDR----LDDV 340
E L + +SP ++ + G + L+ +D+ LDD+
Sbjct: 293 ELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDM 333
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + N ++ +++A+ + ++A +++
Sbjct: 341 TAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSIIQ 400
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
+K N S D Y +I+ + N A + M G PDS ++SLI
Sbjct: 401 SLGNKQ---NSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLC 457
Query: 155 CSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G + A+ +F IM E Y +P+ ++A I G D + + G+ N
Sbjct: 458 SEGMLDEAMEIFSIM--EENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPN 515
Query: 214 VQTYESLIHG 223
TY ++ G
Sbjct: 516 ETTYTIIVEG 525
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/271 (18%), Positives = 103/271 (38%), Gaps = 43/271 (15%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGI 139
+S+ +KA V+E ++ G+ + D +C ++ K NV +AM + ME G
Sbjct: 109 KSNKMRKATKVME-----LMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGY 163
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIM------------------------------ 169
++ +NSL+ G++ +L + +
Sbjct: 164 PTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIR 223
Query: 170 ----VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+ ++ KPN +Y+ ++G G + +++ + GFS NV +Y L+
Sbjct: 224 LLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLC 283
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
++ EM PSI ++ L + D+ L + +K
Sbjct: 284 YEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAA 343
Query: 286 MAQKLVKCYCELGRVDELEEQLETLT--KCN 314
++ C+ G+VD + + L+ + +CN
Sbjct: 344 SYNPIIARLCKEGKVDLVVKCLDQMMYRRCN 374
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 96/256 (37%), Gaps = 48/256 (18%)
Query: 34 STSVSSSNPLISRL-LQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLV 92
S S+ + N LI L L Q LD + F ++ S++ +I A+L
Sbjct: 304 SPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPII----------ARLC 353
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
E ++D ++K CLD+ M + P+ +N++ A
Sbjct: 354 KEGKVDLVVK----CLDQ-----------------------MMYRRCNPNEGTYNAI--A 384
Query: 153 CLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL---GNVDAMNKWYAANIAA 208
LC G V A S+ + + + K NS T+D + SSL GN +
Sbjct: 385 VLCEEGKVQEAFSIIQSLGN----KQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKY 440
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF + TY SLI G D + M P + ++ GLC RK D
Sbjct: 441 GFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLS 500
Query: 269 KSFLKFLLGGGWKINE 284
+ ++ G+ NE
Sbjct: 501 LMVFEMMVKKGYMPNE 516
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
AM +F+ ME +PD FN+LI C C ++ L +FE+MV + Y PN TY
Sbjct: 465 AMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLS-LMVFEMMVK-KGYMPNETTYTII 522
Query: 186 ISGFS 190
+ G +
Sbjct: 523 VEGIA 527
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 5/209 (2%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
D+M+ KG + L Y LI + K + A +F + +G PD +FN+LI +
Sbjct: 435 DEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCAN 494
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G++ A +L + M P+ TY+ + G G V+ + G + +
Sbjct: 495 GNLDRAFALLKEM-DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHIS 553
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
Y +LI G K D + +EM+S+G P++ +++GLC ++ D + LK ++
Sbjct: 554 YNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMV 613
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEE 305
G +++ L++ +G+VD+ E
Sbjct: 614 SKGITPDDSTYFSLIEG---IGKVDDSSE 639
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + I P + +N LI A G + A + + M S P+S TY+ I+G+ G
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSG-IVPDSITYNILINGYCRCG 425
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N + I+ G + TY SLI+ K + D +E+++ G P + +
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFN 485
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
+++G CA LDR + LK + +E L++ C G+V+E E L+ + +
Sbjct: 486 ALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRR 545
Query: 314 NQSPE 318
P+
Sbjct: 546 GIRPD 550
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
SME G+KP+ +N++I G V A + +IM + +P+S TY + ISG
Sbjct: 261 SMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM-KNRGVEPDSYTYGSLISGMCKG 319
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G ++ + G TY +LI G D + +EM+ I+P++
Sbjct: 320 GKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTY 379
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ L K+D +K + G + L+ YC G
Sbjct: 380 NLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCG 425
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Query: 134 MEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M GI PDS +N LI C C G+ A +L + M+S + +P TY + I S
Sbjct: 402 MGDSGIVPDSITYNILINGYCRC-GNAKKAFNLHDEMIS-KGIQPTLVTYTSLIYVLSKR 459
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ A + + I G S ++ + +LI G + D +EM I+P
Sbjct: 460 NRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTY 519
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+++G C K++ + LK + G + + L+ Y + G +++
Sbjct: 520 NTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIND 569
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 9/278 (3%)
Query: 143 SAVFNSLICAC--LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
S VF+ LI AC L GD A F++M + P +T++A +S F L + +
Sbjct: 166 SIVFDMLIRACCELKRGD--DAFECFDMM-KEKGVVPKIETFNAMLSLFLKLNQTETVWV 222
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
YA V T+ +I+ K F M +LG+ P++ V+ G C
Sbjct: 223 LYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYC 282
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+R +++ + L + G + + L+ C+ G+++E LE + + P +
Sbjct: 283 SRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAV 342
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
++ +I Y L M ++ + + ++I + F D D +
Sbjct: 343 T--YNTLIDGYCNKGDLVKAFGYRDEMVRRAI-LPTVSTYNLLIHALFLEGKMDEADGMI 399
Query: 381 DHIKGSYKLRRA-TYDFLVAGYRRAGLSGKLDSVINEM 417
+ S + + TY+ L+ GY R G + K ++ +EM
Sbjct: 400 KDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 114/290 (39%), Gaps = 12/290 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+V+ A V M+ +G++PDS + SLI G + A + E M P
Sbjct: 285 GRVEG---ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKM-KEIGLLPT 340
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
+ TY+ I G+ + G++ + + V TY LIH D D +
Sbjct: 341 AVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIK 400
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M GI+P ++ G C + + ++ G + L+ +
Sbjct: 401 DMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRN 460
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ ++ E + + SP++++ F+ +I + + LD + M K+ + +
Sbjct: 461 RMKAADDLFEKIIREGASPDLIM--FNALIDGHCANGNLDRAFALLKEMDKRNI---VPD 515
Query: 359 DVEMVICSYFRC---AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+V RC + +L + + + +Y+ L++GY + G
Sbjct: 516 EVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRG 565
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 9/241 (3%)
Query: 91 LVLEWRLDK---MLK--GNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPD 142
L LE ++D+ M+K G+ + + Y LI + N A ++ M ++GI+P
Sbjct: 386 LFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPT 445
Query: 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+ SLI + A LFE ++ E P+ ++A I G + GN+D
Sbjct: 446 LVTYTSLIYVLSKRNRMKAADDLFEKIIR-EGASPDLIMFNALIDGHCANGNLDRAFALL 504
Query: 203 AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262
+ TY +L+ G + + +EM GI P ++ G R
Sbjct: 505 KEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKR 564
Query: 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ + +L G+ L++ C+ + D EE L+ + +P+ +
Sbjct: 565 GDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTY 624
Query: 323 F 323
F
Sbjct: 625 F 625
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N+ A+ + M+ +G+K D + +LI D+ +A L +
Sbjct: 545 YTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELR 604
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN Y++ I+GF ++ NV+ Y + G +++TY SLI G LK+
Sbjct: 605 GAG-LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL 663
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+ EM+S GI+P ++ GLC + + + + L+ + G
Sbjct: 664 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNG 710
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + N+ A V+ M G P++ F L+ GD+ A S+F M
Sbjct: 405 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK 464
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P T I G G + ++ GF Y ++I G +K +
Sbjct: 465 DAN-ILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNI 523
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y EM +GI PS +++G C +D L + G K++ L
Sbjct: 524 NLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTL 583
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C+ + E L L SP ++
Sbjct: 584 IDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 615
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G ++N A +F M+ I P +I +G LF VS + + P
Sbjct: 451 GDIEN---AFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVS-QGFVPT 506
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y+ I GF GN++ + Y G + + TY SLI G K + D +
Sbjct: 507 CMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLN 566
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M G+ I +++G C RR + L L G G N + ++ + +
Sbjct: 567 DMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMN 626
Query: 299 RVDE 302
V+E
Sbjct: 627 NVEE 630
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y+ + L N +A+ + M A G P F S+I AC+ G+V
Sbjct: 187 RGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 246
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL L + MV+ + N + + G+ GN+ + +G N TY LI
Sbjct: 247 ALRLKDDMVNCGK-SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLI 305
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
G K + + FY EM + GI S+ L +LEG
Sbjct: 306 DGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEG 342
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 18/246 (7%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPN 178
K N+ A +V+ M GI P + + SLI C G+ + AL L M + K +
Sbjct: 519 KEGNINLASNVYREMCEVGITPSTVTYTSLIDG-FCKGNNIDLALKLLNDM-KRKGLKMD 576
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
K Y I GF ++ + ++ AG S N Y S+I G + + Y+
Sbjct: 577 IKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYK 636
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M++ GI + +++GL +L +L G ++ L+ C G
Sbjct: 637 KMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKG 696
Query: 299 RVDELEEQLETLTKCNQSPEVLL-------HFFSGIIR-LYALSDRL-------DDVEYS 343
+ + + LE + N P VL+ HF G ++ + L D + D++ Y
Sbjct: 697 QFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYD 756
Query: 344 VGRMGK 349
+ GK
Sbjct: 757 ILVNGK 762
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L L+ D KG + + Y LI K +++ A + + G+ P+ ++NS+I
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 619
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
+V A+ L++ MV+ E + KTY + I G G + + + ++ G
Sbjct: 620 TGFKNMNNVEEAIDLYKKMVN-EGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGI 678
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + + LI+G F++ + E+M +IPS+ I ++ G
Sbjct: 679 LPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 726
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + NV A+ ++ M +GI D + SLI L SG ++ A + M+
Sbjct: 615 YNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEML 674
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ + + I+G + G + K +V Y +LI G K +
Sbjct: 675 S-KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNL 733
Query: 231 DSVDRFYEEMMSLGIIP 247
R ++EM+ G++P
Sbjct: 734 QEAFRLHDEMLDRGLVP 750
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 5/163 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
+ ++F ++++IT ++ + + + L KM+ C L Y LI K +
Sbjct: 607 GLSPNRFIYNSMITGFKNMNNVEEAIDL---YKKMVNEGIPCDLKTYTSLIDGLLKSGRL 663
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+A + T M ++GI PD LI G A + E M + + P+ Y+
Sbjct: 664 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM-NGKNMIPSVLIYNT 722
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
I+G GN+ + + + G + TY+ L++G K
Sbjct: 723 LIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKG 765
>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
Length = 363
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 7/251 (2%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQ 122
I+ + ++++LI ++ + L+L +++M G ++ Y LI K
Sbjct: 3 IWGIEPNMVTYNSLIHGFCMTNGVDSTLLL---MEEMTATGCLPDINTYNTLIDGLCKTG 59
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKT 181
VP +F M+A+ PD ++ LI C D + A +LF+ M+ P+ T
Sbjct: 60 RVPEVNRLFGEMKAKFCNPDVITYSCLIGG-FCKLDRINMACTLFDDMLKQAAL-PDVVT 117
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ + G+ + G VD + +A+ S +V TY SL+ G K + R + M
Sbjct: 118 FPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMA 177
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ I +++ C+ K L+ ++G G + N + L+ +C G ++
Sbjct: 178 KGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLE 237
Query: 302 ELEEQLETLTK 312
E + LE L +
Sbjct: 238 EAHKMLERLER 248
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 1/189 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GI+P+ +NSLI + V + L L E M ++ P+ TY+ I G G
Sbjct: 1 MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATG-CLPDINTYNTLIDGLCKTG 59
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V +N+ + A + +V TY LI G K + +++M+ +P +
Sbjct: 60 RVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFP 119
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++EG C +D + L+ ++ + LV +C++ R+ E L+ + K
Sbjct: 120 TLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKG 179
Query: 314 NQSPEVLLH 322
P V+++
Sbjct: 180 ECQPNVVIY 188
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 1/195 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +N+ A + ++ G+KPD+ ++N+++ + A+ +++ M
Sbjct: 232 YTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYKQM- 290
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +P+ TY+ I G S G V K + +G + TY SL++G + D
Sbjct: 291 KEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDV 350
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
EEM G P+ +L G C R+L++ + GG K+
Sbjct: 351 LGAAALLEEMELKGCSPNSCTYNTLLHGFCKGRRLNKGVELYGVIKKGGMKLETASYATF 410
Query: 291 VKCYCELGRVDELEE 305
V+ C GRV E E
Sbjct: 411 VRALCREGRVAEAYE 425
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 12/299 (4%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
SS AQ VL ++K K N+ +D + +G+V + + F+S + KPD+
Sbjct: 137 SSLSSAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHS---KPDT 193
Query: 144 AVFNSLICACLCSGDVVTAL-SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY 202
+N L+ CLC + ++ S + M SS + KP+ TY I + N+ ++
Sbjct: 194 FTYNFLV-KCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLV 252
Query: 203 AANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
A G + Y +++ G L + ++V R Y++M G+ P + ++ GL
Sbjct: 253 AVLKECGLKPDAFLYNTIMKGYCLLNKGIEAV-RIYKQMKEEGVEPDLVTYNTLIFGLSK 311
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
++ K LK ++ G + L+ C G V LE + SP
Sbjct: 312 CGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCT 371
Query: 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCA-AYDRLD 377
++ ++ + RL+ G + K G+ ++A V +C R A AY+ D
Sbjct: 372 --YNTLLHGFCKGRRLNKGVELYGVIKKGGMKLETASYATFVRALCREGRVAEAYEVFD 428
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 137/324 (42%), Gaps = 46/324 (14%)
Query: 67 FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPF 126
F+ DA++ S+P A L L++ +++ E + Y + + K +++
Sbjct: 137 FDGKLLEQDAVVILNNMSNPDTALLALKFFQERLKFNREVVV--YNVTLKVFRKGRDLDK 194
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLI-CACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A +F M +G+KPD+ F+++I CA LC+ D A+ FE M S +P+ T
Sbjct: 195 AEKLFDEMLERGVKPDNFTFSTIISCARLCNLAD--KAVEWFEKM-PSFGLEPDDVTLST 251
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I + GNV+ Y + ++ + +LI A +FD YEEM +LG
Sbjct: 252 MIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALG 311
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG------------------------W 280
+ P++ I +L+ + ++ +VK F + ++ G +
Sbjct: 312 VKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAF 371
Query: 281 KINENMAQK------------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328
KI M +K L C +LG VD+ E E + P+ FS +I
Sbjct: 372 KIYREMKEKGLGLNVVLYNSILAMC-ADLGHVDKAVEIFEDMKSSGIKPDSWT--FSSMI 428
Query: 329 RLYALSDRLDDVEYSVGRMGKQGL 352
+++ ++ + E ++ M + G
Sbjct: 429 TIFSCCGKVSEAENTLNEMFEAGF 452
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 5/237 (2%)
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+ +I G+ NV A+ ++ + D+ F++LI +G+ L+++E M
Sbjct: 250 STMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEM-K 308
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ KPN Y+ + + K+Y I G S + TY +L+H +AR +
Sbjct: 309 ALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGE 368
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y EM G+ ++ + +L +CA +D+ + + G K + +
Sbjct: 369 DAFKIYREMKEKGLGLNVVLYNSIL-AMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSM 427
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ + G+V E E L + + P + + + +I+ Y + R+DDV + R+
Sbjct: 428 ITIFSCCGKVSEAENTLNEMFEAGFQPNIFI--LTSLIQCYGKAQRIDDVVNTFNRI 482
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ G+ + A ++ M+ +G+ + ++NS++ C G V A+ +FE M
Sbjct: 354 YAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMK 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS KP+S T+ + I+ FS G V AGF N+ SLI KA+
Sbjct: 414 SSG-IKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRI 472
Query: 231 DSVDRFYEEMMSLGIIP 247
D V + + L I P
Sbjct: 473 DDVVNTFNRIFELVITP 489
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 138/328 (42%), Gaps = 58/328 (17%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ L+ + +++ ++A +L+ L+ + NE Y +I K V
Sbjct: 71 GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIM---YTTVINGFCKAGQV 127
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M+ +G+K D + ++LI G + AL F+ M EE PN TY+
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM--GEECSPNVITYNT 185
Query: 185 FISGFSSLGNVDA-------MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
++G +D M K Y A + G +V +Y ++I KA+ D ++
Sbjct: 186 VVNGLCKANRIDEALELFDDMEKRYEA--SHGCEPDVISYSTVIDALCKAQRVDKAYEYF 243
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL-----GGG------------- 279
+ M ++G P++ +++GLC K+DR L+ LL G G
Sbjct: 244 KRMRAVGCAPNVVTYSSLIDGLC---KVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL 300
Query: 280 WKINENMA-----QKLVKC---------------YCELGRVDELEEQLETLTKCNQSPEV 319
WK +E ++L+K C+ GRVDE L + + +P+V
Sbjct: 301 WKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDV 360
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ +S II + + R+D + RM
Sbjct: 361 IT--YSSIIDGFCKAGRMDKADDVFTRM 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 3/205 (1%)
Query: 115 IALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
+A+ G K V A + M + PD ++S+I +G + A +F M+
Sbjct: 330 VAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMV- 388
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
E P+ T+ + GFS + + + AGF +QTY L+ A +S
Sbjct: 389 HECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVES 448
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
Y +M P +++ LC R++D K FL + N + LV+
Sbjct: 449 ALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE 508
Query: 293 CYCELGRVDELEEQLETLTKCNQSP 317
C+ G VDE L+ + + P
Sbjct: 509 VLCKQGEVDEACSVLDNVVEVGCQP 533
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 42/245 (17%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV + + M+ +G + FN+++ A + + A FE ++
Sbjct: 258 YSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 317
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + KPN TY+ + G G VD + + + + +V TY S+I G KA
Sbjct: 318 KSGK-KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRM 376
Query: 231 DSVD-----------------------------------RFYEEMMSLGIIPSIPILEKV 255
D D R +E+M++ G IP + +
Sbjct: 377 DKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 436
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRVDELEEQLETLTK 312
++ +C D V+S L+ K + N L++C C RVDE +E L+ +
Sbjct: 437 MDCVCG---ADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEA 493
Query: 313 CNQSP 317
N P
Sbjct: 494 DNVVP 498
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+W A GF N T L++ +KA+ + R +E + P+ + V+ G
Sbjct: 64 QW--AGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGF 121
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C ++D+ L + G K++ + L++ C GR+DE EQ +++ + SP V
Sbjct: 122 CKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGE-ECSPNV 180
Query: 320 LLHFFSGIIRLYALSDRLDD 339
+ ++ ++ ++R+D+
Sbjct: 181 IT--YNTVVNGLCKANRIDE 198
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA LI + + V A MEA + P+ A+ ++L+ G+V A S+ + +V
Sbjct: 468 YAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVV 527
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI---AAGFSVNVQTYESLIHGSLKA 227
+P +T+ + + KW AA+ + GF + TY + KA
Sbjct: 528 EV-GCQPLGETFKILVE------ELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKA 580
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
D E+M+ G+ P VL LC LDRV+S
Sbjct: 581 GKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCG---LDRVES 620
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ V M +G++PD + +++ + LC D V +A++ FE M +S P TY
Sbjct: 586 AVEVIEQMVLKGVRPDEGTYVAVLRS-LCGLDRVESAIAEFEKM-ASRGCAPGLVTYTLL 643
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
I S D + + A +AAGF+ QT +L
Sbjct: 644 IGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYK 176
GK V A MEA+GIKP+S FN+LI C G A ++++ + S
Sbjct: 235 GKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN---CLGRAKYASEAYKVLQEMRSAGLT 291
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY I F+ GN+ + + AG S NV TY LI +KA +
Sbjct: 292 PDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKL 265
Y +M GI+P I VL+ L + KL
Sbjct: 352 YFDMKKKGILPD-AITATVLQQLAGKCKL 379
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 18/249 (7%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+IA G+ + M F ++ G KP++ + +I + + +G+VV A+ + M+ +
Sbjct: 20 VIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTG 79
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P++ Y+ + G +D K +A+ + G + TY LI + + +
Sbjct: 80 -LEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEA 138
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
++EM G PS P V++ C +++ LK +L ++ L+
Sbjct: 139 TLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITA 198
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI-IRLYALSDRLDDVEYSVGRMGKQGL 352
GR + E E + K SG+ + + + LD G+ GK GL
Sbjct: 199 VSRTGRTELACEIFERMKK------------SGVAVNTVSFNAMLD----CCGKAGKVGL 242
Query: 353 SFKSAEDVE 361
+++ +++E
Sbjct: 243 AYQFMDEME 251
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + K + AM V M + + PD NSLI A +G A +FE M
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S N+ +++A + G V ++ A G N T+ +LI+ +A+
Sbjct: 217 KS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYA 275
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ +EM S G+ P +
Sbjct: 276 SEAYKVLQEMRSAGLTPDV 294
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 9/190 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----DVVTALSLF 166
Y+ LI + + + A+ VF M GI P N + C L G ++ LF
Sbjct: 426 YSSLIYAYCRHRQLKEALEVFELMICDGICP-----NVVTCTILVHGFSNEGLIGEAFLF 480
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
V PN TY I+G + + + +A I G+ + Y +I G +K
Sbjct: 481 LDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVK 540
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
A D R Y +M+ G P+I ++ GLC KL V + K ++G G + +
Sbjct: 541 ALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRIL 600
Query: 287 AQKLVKCYCE 296
L+ CYC+
Sbjct: 601 YTSLIACYCK 610
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 25/288 (8%)
Query: 18 LMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFA-----FNSSQF 72
+P R + C + ++ P + +L + S + ++ ++A F
Sbjct: 99 FLPRRIREVRCLIQSVVDHCGNAGPELFQLAPMLASNLGGSMTLPQVYATVIRVFVELSM 158
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE-----SCLDE------------YACLI 115
DAL+T +++ V + L +++GN+ S D+ Y+ L+
Sbjct: 159 FEDALVTYVEAKKVGVELQVCNFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLM 218
Query: 116 AL--SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
++ G + A + + ME +G++P++A + + + LC V + F M+
Sbjct: 219 SMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYG-LCRAKQVKSAWNFLQMLCQR 277
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y NS ++A I GF G V + + GF +V +Y L+ G K D +
Sbjct: 278 GYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTG 337
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
EM GI P++ +L GLC +++ K L G+K
Sbjct: 338 YYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFK 385
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVV 160
+G + + Y LI +P M +F M +G+ PD ++ SLI AC C ++
Sbjct: 557 EGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLI-ACYCKRSNMK 615
Query: 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
AL +F M +E +S Y I GFS + +D + + G + V TY L
Sbjct: 616 AALEIFREM-ETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDL 674
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIP 247
I G K D Y M+ GI P
Sbjct: 675 IIGYFKIGDEKKAMVMYNSMLQAGIAP 701
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIM 169
Y+ +I K ++ A ++ M +G KP+ + SLI LC D + ++LF+ M
Sbjct: 531 YSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLING-LCHDDKLPEVMTLFKHM 589
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ E P+ Y + I+ + N+ A + + G S + Y LI G K
Sbjct: 590 IG-EGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLA 648
Query: 230 FDSVDRFYEEMMSLGIIPSI 249
D F EEMM+ G+ P++
Sbjct: 649 MDGAQLFMEEMMNKGLTPTV 668
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 9/221 (4%)
Query: 87 KKAQLVLEWRLDKML--KG---NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
+ Q+ W +ML +G N C + G+V A+ VF M+ G P
Sbjct: 260 RAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHK---AVEVFDGMKKCGFVP 316
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D ++ L+ GDV+T + + ++ PN +Y + + G G V+ +
Sbjct: 317 DVHSYSILVDGLCKQGDVLTGYYML-VEMARNGITPNLVSYSSLLHGLCRAGRVELAFEL 375
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ GF + Y ++HG + D + + +M+ +P ++ C
Sbjct: 376 FKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCR 435
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
R+L + ++ G N LV + G + E
Sbjct: 436 HRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGE 476
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 208 AGFSVNVQTYESLI----HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+G S N+ +Y L+ HG+ + EM G+ P+ L GLC +
Sbjct: 205 SGPSPNIYSYSVLMSMYTHGAKLC--LEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAK 262
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
++ +FL+ L G+ N ++ +C G+V + E + + KC P+V
Sbjct: 263 QVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDV 318
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ + N+ A VF MEA +PD +N++I G A LF +
Sbjct: 329 YNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDL- 387
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P++ +Y++ + F+ GNV+ + + + + GF + TY ++IH K
Sbjct: 388 ESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQN 447
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + Y +M S G P +++ L K+ + +L G K L
Sbjct: 448 ELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSAL 507
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ Y + G+ E EE + + + P+ L
Sbjct: 508 ICGYAKAGKPVEAEETFDCMLRSGIRPDHL 537
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 4/159 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + GK A+ ++ M++ G PD+ + LI + + + A + M+
Sbjct: 434 YNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEML 493
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ KP KTY A I G++ G + + + +G + Y ++ L+ +
Sbjct: 494 NTG-VKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEP 552
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
Y+EM+ GI + E +L L RK+++V+
Sbjct: 553 KRAMTLYKEMLHDGITLDHSLYELMLRTL---RKVNKVE 588
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 117/299 (39%), Gaps = 31/299 (10%)
Query: 77 LITSLQSSSPKKAQLVLE---------WRLDKMLK--------GNESCLDEYACLIALSG 119
L+ L+ SP+ +Q++ E +LD LK G + LI
Sbjct: 659 LLEFLKEHSPRSSQMITEALVVMLCKAQQLDAALKEYSNNRELGFTGSFTMFESLIQCCL 718
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ + + A VF+ M GIK +++ S++ G TA L + S N
Sbjct: 719 ENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNI 778
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAG------FSVNVQTYESLIHGSLKARDFDSV 233
Y I + L W A AG +V+ + + +LI + ++
Sbjct: 779 SLYVNVIEAYGRL------KLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERA 832
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+ MM G P++ + +L+ L +LD + ++ L G+KI+++ ++
Sbjct: 833 RAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDA 892
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ G + E+++ + P +H + + RL + ++ DVE + M + G
Sbjct: 893 FARAGNIFEVKKIYHGMKAAGYFP--TMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGF 949
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 108/299 (36%), Gaps = 48/299 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE-----YKPNSKT 181
A +F +M G P N L+ A + G L E+ V +E +K + +
Sbjct: 832 ARAIFNTMMRDGPSPTVDTINGLLQALIVDG------RLDELYVVVQELQDMGFKISKSS 885
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ F+ GN+ + K Y AAG+ + Y + + + V+ EM
Sbjct: 886 ILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEME 945
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P + I VL+ A + + + G + +E+ L+ YC R +
Sbjct: 946 EAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPE 1005
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE 361
E L+H +R+ L +LD + V GKQ L ++ E
Sbjct: 1006 E--------------GFSLMHE----MRVAGLEPKLDTYKSLVASFGKQQLVEQAEE--- 1044
Query: 362 MVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
LF + KL R+ Y ++ YR +G K + + + MK A
Sbjct: 1045 ----------------LFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDA 1087
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDAFISGFSS 191
M +G KPD FN+LI A L +G ++ L++ E++ V +P++ TY+ IS S
Sbjct: 280 MRERGCKPDLVSFNTLINARLKAGAMMPNLAI-ELLNEVRRSGLRPDTITYNTLISACSR 338
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
N++ K + A ++ TY ++I + ++ + ++ S G P
Sbjct: 339 ASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVS 398
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L +++VK + ++ G+ +E ++ Y + G+ +EL QL
Sbjct: 399 YNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQ-NELALQL 453
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E LD Y L+A GK Q V A +F ++++G K D + +++++ SG A
Sbjct: 1018 GLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKA 1077
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LF +M + +P T + + S G K + G +++ Y S+I
Sbjct: 1078 ERLFSMMKDA-GVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVID 1136
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIP 247
L+ D++ + +M G+ P
Sbjct: 1137 AYLRNGDYNIGIQKLIQMKKEGLEP 1161
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 24/273 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y + L + + V + + ME G KPD +++NS++ + D + +++ +
Sbjct: 921 YRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQ-RI 979
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+ TY+ I + + AG + TY+SL+ K +
Sbjct: 980 KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLV 1039
Query: 231 DSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + +EE+ S G + K+ + K +R+ S +K G +
Sbjct: 1040 EQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMK---DAGVEPTIATM 1096
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG-- 345
L+ Y G+ E E+ L L + + L +S +I Y L + +Y++G
Sbjct: 1097 HLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLP--YSSVIDAY-----LRNGDYNIGIQ 1149
Query: 346 ---RMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
+M K+GL D + C + R A+ R
Sbjct: 1150 KLIQMKKEGLE----PDHRIWTC-FIRAASLSR 1177
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 38/241 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ + GK+ A+HV M+ +G++P +N+LI AC AL++++ ++
Sbjct: 141 YNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLL 200
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + Y PNS TY+A IS + + + Y + +V TY SLI KA +
Sbjct: 201 S-DGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQW 259
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ R + EM +P+ ++ CA+ GG W
Sbjct: 260 ETALRIFNEMQQDNCVPNTVTYNSLVTA-CAQ--------------GGQW---------- 294
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ E E +T +P+V+ ++ +I Y + + G+M Q
Sbjct: 295 ----------EKATEVFEQMTAHGCTPDVVT--YTALISAYERGGQWQKALQAFGKMCMQ 342
Query: 351 G 351
G
Sbjct: 343 G 343
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ GK + A+ V+ M Q ++ ++SLI AC +G TAL +F M
Sbjct: 211 YNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEM- 269
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY++ ++ + G + + + A G + +V TY +LI + +
Sbjct: 270 QQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQW 329
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ + +M G P + +++ L
Sbjct: 330 QKALQAFGKMCMQGCKPDAIVYNAIIDTL 358
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 98 DKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ML+ N E + Y+ LI+ K A+ +F M+ P++ +NSL+ AC
Sbjct: 232 QEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQG 291
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
G A +FE M ++ P+ TY A IS + G
Sbjct: 292 GQWEKATEVFEQM-TAHGCTPDVVTYTALISAYERGGQ 328
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y LI A+ V+ + + G P+S +N+LI A + +
Sbjct: 167 EGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGK 226
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL +++ M+ + + + TY + IS G + + + N TY SL+
Sbjct: 227 ALEVYQEML-RQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLV 285
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ +E+M + G P +
Sbjct: 286 TACAQGGQWEKATEVFEQMTAHGCTPDV 313
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 5/227 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+ ALI SL + KKA V++ ++ L+ N + Y LI K +V A+ +
Sbjct: 202 YTALIDSLCRHGKVKKAARVMDMMTERGLEPN---VVTYNVLINSMCKEGSVREALDLRK 258
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSS 191
+M +G++PD +N+LI ++ A++L E M+ E +P+ T+++ I G
Sbjct: 259 NMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCK 318
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+G + + A G N+ + LI G L+ +EM S G+ P
Sbjct: 319 IGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFT 378
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
++ G C R+++R +S+L + G + L+K C+ G
Sbjct: 379 YSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
F + V + +P++ + +L+ A A+ L M +P+ TY
Sbjct: 77 FLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCG-VRPDVVTYGTL 135
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G +VD + +G NV Y L+HG K ++SV + +EEM GI
Sbjct: 136 IRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGI 195
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P + + +++ LC K+ + + + G + N L+ C+ G V E +
Sbjct: 196 EPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALD 255
Query: 306 QLETLTKCNQSPEVLLH 322
+ +++ P+V+ +
Sbjct: 256 LRKNMSEKGVQPDVVTY 272
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 39/251 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+CL+ K VF M +GI+PD ++ +LI + G V A + ++M
Sbjct: 167 YSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMM- 225
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY+ I+ G+V G +V TY +LI G +
Sbjct: 226 TERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285
Query: 231 DSVDRFYEEMMS--LGIIPSIPILEKVLEGLCA---RRKLDRVKSFL------------K 273
D EEMM + P + V+ GLC R+ +V++ +
Sbjct: 286 DEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFN 345
Query: 274 FLLGGGWKIN---------ENMAQK-----------LVKCYCELGRVDELEEQLETLTKC 313
L+GG +++ + MA L+ +C++ +V+ E L +
Sbjct: 346 LLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ 405
Query: 314 NQSPEVLLHFF 324
PE +H+
Sbjct: 406 GMEPEP-VHYI 415
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 3/190 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI +V A+ + M GI+P+ V++ L+ +G + +FE M
Sbjct: 132 YGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEM- 190
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S +P+ Y A I G V + G NV TY LI+ K
Sbjct: 191 SGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSV 250
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA--Q 288
+ M G+ P + ++ GL + ++D + L+ ++ G ++ ++
Sbjct: 251 REALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFN 310
Query: 289 KLVKCYCELG 298
++ C++G
Sbjct: 311 SVIHGLCKIG 320
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ + K D+A ++++I SG+ A + M+ E P++ TY I
Sbjct: 430 ARDLFNEMD-RNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMID-EGLIPDAVTYSIPI 487
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F+ G++ A + A+GF +V ++SLI G D + + EM + +
Sbjct: 488 NMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVA 547
Query: 247 PSIPILEKVLEGLCA 261
I+ ++ L A
Sbjct: 548 LDPKIISTIVTSLGA 562
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + F ++A+I+ L S K + + L+ +G + +
Sbjct: 201 IEEARRLLDGMSCSGVAPDIFCYNAIISCL--SKAGKMEEASTYLLEIQGRGLKPDAVTF 258
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
I K + A F M G+ P++ ++ LI +G+++ ALS+F +
Sbjct: 259 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR-HLH 317
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ P+ +T AFI G G V K ++ G +V TY SLI G K + +
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++EM GI P+I I +++GLC + R + + G + + ++
Sbjct: 378 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 437
Query: 292 KCYCELGRVDE 302
YC+ V E
Sbjct: 438 DGYCKSENVAE 448
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 11/280 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F M+ G+KPD ++LI + GD+ L + ++MVS N TY+ I G
Sbjct: 32 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG-IPINLITYNVLIHGL 90
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ + I G N +T+ LI G + + +EM ++PS
Sbjct: 91 CKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 150
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC + L L+ + G K N + L+ Y GR++E L+
Sbjct: 151 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDG 210
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
++ +P++ ++ II + + ++++ + + +GL A I Y +
Sbjct: 211 MSCSGVAPDIFC--YNAIISCLSKAGKMEEASTYLLEIQGRGLK-PDAVTFGAFILGYSK 267
Query: 370 CA----AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
A D LDH Y L+ G+ +AG
Sbjct: 268 TGKMTEAAKYFDEMLDH---GLMPNNPLYTVLINGHFKAG 304
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 123/286 (43%), Gaps = 25/286 (8%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F ++AL+ L +S ++A+ + + +K L+ + Y+ +I K +NV A +
Sbjct: 396 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSV---TYSTMIDGYCKSENVAEAFSL 452
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M ++G++P S V+N+L+ C GD+ A++LF M+ ++ + +++ I G+
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML--QKGFATTLSFNTLIDGYC 510
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF-----------------DSV 233
+ ++ + IA + TY ++I KA D+V
Sbjct: 511 KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 570
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+E+M++ G+ P V+ C L ++G G + L+
Sbjct: 571 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 630
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ + E + L+ + + P L S ++R + + ++D+
Sbjct: 631 LCKREDLTEASKLLDEMGELGLKPS--LAACSTLVRSFHEAGKMDE 674
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN+ TY +G ++ + G + +LI G ++ D D V R
Sbjct: 8 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ M+S GI ++ ++ GLC K+++ LK ++ G K N L++ YC
Sbjct: 68 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127
Query: 297 ---LGRVDELEEQLE 308
+GR EL +++E
Sbjct: 128 EHNMGRALELLDEME 142
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 3/176 (1%)
Query: 99 KMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+++ N D + + +SG K + AM + ME + PD +N+LI C
Sbjct: 291 ELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEH 350
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G L E M KPNS TY+ + F G +D ++K +G ++ T
Sbjct: 351 GSSEEGFKLIEEM-EGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVT 409
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
Y +LI K D R +EM G+ L +L LC RKLD L
Sbjct: 410 YNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLL 465
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 125/307 (40%), Gaps = 27/307 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M G PD+ +N+++ G + A L M + + PN T++ +
Sbjct: 216 AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLF-PNRTTFNILV 274
Query: 187 SGFSSLGNVDAMNKWY--AANIAAGFSVN-----VQTYESLIHGSLKARDFDSVDRFYEE 239
G LG W AAN+ S N TY +I G K R EE
Sbjct: 275 VGCCRLG-------WLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREE 327
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M +L + P + ++ G + ++ + G G K N +VK + + G+
Sbjct: 328 MENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGK 387
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+DE+++ + + + P+++ ++ +I + ++D+ + MG++GL
Sbjct: 388 MDEVDKTVRKMEESGCLPDIVT--YNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD---- 441
Query: 360 VEMVICSYFRCAAYDR-----LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
++ + + R +R DL + Y + +Y L+ GY + + + +
Sbjct: 442 -DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLW 500
Query: 415 NEMKFAE 421
+EMK E
Sbjct: 501 DEMKEKE 507
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
ME G PD +N+LI G + A L + M + K + T + +
Sbjct: 398 MEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEM-GRKGLKMDDVTLNTMLRALCRER 456
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + + G+ V+ +Y +LI G K R ++EM IIPSI
Sbjct: 457 KLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYN 516
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++ GLC K ++ L LL G +E ++ YC+ G+V++ + + +
Sbjct: 517 SMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576
Query: 314 NQSPEVL 320
N P+V+
Sbjct: 577 NFKPDVV 583
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + S +G D + +LI AL L++ M +E P+ TY++ I
Sbjct: 461 AHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEM-KEKEIIPSIITYNSMI 519
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G +G + + +G + TY ++IHG + + +F+ +M+
Sbjct: 520 AGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFK 579
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + +L GLC L++ + G ++ ++ C+ R E +
Sbjct: 580 PDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDL 639
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
LE + + P+ + ++ I+ + R+ D E + ++ ++G S
Sbjct: 640 LEEMEEKKLGPDC--YTYNAILGGLTDAGRMKDAEEFISKIAEKGKS 684
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
I G +N ++ LIHGS F R +M G P +L+GLC + +L
Sbjct: 189 IKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRL 248
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--F 323
+ + L + G N LV C LG + E +E +++ + P+ +
Sbjct: 249 NEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVM 308
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV---EMVICSYFRCAAYDRLDLFL 380
SG + +++ + R+ ++ + K + DV +I F + + +
Sbjct: 309 ISGFCKQGRIAEAM--------RLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLI 360
Query: 381 DHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ ++G K TY+ +V + + G ++D + +M+
Sbjct: 361 EEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKME 399
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 3/251 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+ + + LD + F ++A+I+ L S K + + L+ +G + +
Sbjct: 489 IEEARRLLDGMSCSGVAPDIFCYNAIISCL--SKAGKMEEASTYLLEIQGRGLKPDAVTF 546
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
I K + A F M G+ P++ ++ LI +G+++ ALS+F +
Sbjct: 547 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR-RLH 605
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
+ P+ +T AFI G G V K ++ G +V TY SLI G K + +
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++EM GI P+I I +++GLC + R + + G + + ++
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 725
Query: 292 KCYCELGRVDE 302
YC+ V E
Sbjct: 726 DGYCKSENVAE 736
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 113/280 (40%), Gaps = 11/280 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F M+ G+KPD ++LI + GD+ L + ++MVS N TY+ I G
Sbjct: 320 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG-IPINLITYNVLIHGL 378
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G ++ + + G N +T+ LI G + + +EM ++PS
Sbjct: 379 CKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA 438
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GLC + L L+ + G K N + L+ Y GR++E L+
Sbjct: 439 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDG 498
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
++ +P++ ++ II + + ++++ + + +GL A I Y +
Sbjct: 499 MSCSGVAPDIFC--YNAIISCLSKAGKMEEASTYLLEIQGRGLK-PDAVTFGAFILGYSK 555
Query: 370 CA----AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
A D LDH Y L+ G+ +AG
Sbjct: 556 TGKMTEAAKYFDEMLDH---GLMPNNPLYTVLINGHFKAG 592
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 122/300 (40%), Gaps = 42/300 (14%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+G+VQ A+ VF+ ++ +G+ PD ++SLI G+V A L + M + P
Sbjct: 626 NGRVQE---ALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCL-KGIAP 681
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N Y+A + G G++ K + G + TY ++I G K+ + +
Sbjct: 682 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 741
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM S G+ P + ++ G C +++ + + +L G+ + L+ YC+
Sbjct: 742 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSF-NTLIDGYCKS 800
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++ E + + + P+ + ++ +I D G+M + L FK
Sbjct: 801 CKIQEASQLFQEMIAKQIMPDHVT--YTTVI----------DWHCKAGKMEEANLLFKEM 848
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ +++ + TY L+ GY + G S ++ ++ +M
Sbjct: 849 QERNLIVDT-------------------------VTYTSLMYGYNKLGQSSEVFALFEKM 883
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIM 169
Y L+ K ++ A V M+ +G+ P+ ++ SL+ +C GD+ A+ L M
Sbjct: 231 YTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIY-SLVIEGMCQVGDIDEAVELKRSM 289
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ PN+ TY +G ++ + G + +LI G ++ D
Sbjct: 290 -GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 348
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D V R + M+S GI ++ ++ GLC K+++ LK ++ G K N
Sbjct: 349 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCL 408
Query: 290 LVKCYCE---LGRVDELEEQLE 308
L++ YC +GR EL +++E
Sbjct: 409 LIEGYCREHNMGRALELLDEME 430
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 121/302 (40%), Gaps = 39/302 (12%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F ++AL+ L +S ++A+ + + +K L+ + Y+ +I K +NV A +
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT---YSTMIDGYCKSENVAEAFSL 740
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS------------------- 171
F M ++G++P S V+N+L+ C GD+ A++LF M+
Sbjct: 741 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 800
Query: 172 --------------SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+++ P+ TY I G ++ N + V+ TY
Sbjct: 801 CKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SL++G K V +E+M++ G+ P V+ C L ++G
Sbjct: 861 TSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVG 920
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
G + L+ C+ + E + L+ + + P L + ++R + + ++
Sbjct: 921 KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPS--LAACNTLVRSFHEAGKM 978
Query: 338 DD 339
D+
Sbjct: 979 DE 980
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 114/291 (39%), Gaps = 13/291 (4%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAF----NSSQFSWDALITSLQSSS--P 86
NS +N +++++++ P S + LDSV +F F SS +D LI S +
Sbjct: 118 NSELFGLANGVLTQMIRTPYSS-SSILDSV-LFWFRNYGGSSPVVFDILIDSYKRMGMLD 175
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
+ A + + D +L C L+ K + V+ M + D +
Sbjct: 176 EAANVFFVAKNDSILISLIRCNSLLKDLL----KCGMMELFWKVYNGMLDAKMGFDVYTY 231
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
L+ A +GD+ A + I + + PN Y I G +G++D + +
Sbjct: 232 TYLVGALCKTGDLRGAKRVL-IEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMG 290
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G N TY + G +A+ + +EEM G+ P +++G +D
Sbjct: 291 EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 350
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317
V ++ G IN L+ C+ G++++ E L+ + P
Sbjct: 351 EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401
>gi|87241379|gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 514
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 140/305 (45%), Gaps = 17/305 (5%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLD-----EYACLIALSGKVQNVPFAMHVFTSMEAQG 138
S P V+ WR + + +++C + EY+ I +G+ +N+ A+ +F E +G
Sbjct: 130 SKPSLLLEVINWRRKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKG 189
Query: 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
+K S +N+L+ A + +G SLF M P+ TY+ IS F L +D M
Sbjct: 190 VKITST-YNALMGAYMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHM 248
Query: 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + N+ TY LI G + + ++R ++ + S + P++ ++ G
Sbjct: 249 EATFKEMNELPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRG 308
Query: 259 ---LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVDELEEQLETLTKCN 314
L K++++ S +K +N+ +++ C YC+ D++ +++ L K
Sbjct: 309 YAHLGNLEKMEKIYSLVKD------NVNDMPIIRVMICAYCKSSDADKM-NKVKALLKLI 361
Query: 315 QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD 374
E +I+LYA + L++++ ++ ++ + + +I +YFR A +
Sbjct: 362 PEKEYRPWLNVLLIKLYAEGNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIE 421
Query: 375 RLDLF 379
L+ F
Sbjct: 422 SLEKF 426
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 54/263 (20%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G PD++ + +I + V + LF+ M + P+ TY I
Sbjct: 436 AFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAG-VNPDVYTYTILI 494
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM----- 241
F G ++ W+ + G S NV TY +L+H LK++ + M+
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACY 554
Query: 242 ----------------------------------------------SLGIIPSIPILEKV 255
+ I P++ +
Sbjct: 555 PNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGAL 614
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++GLC +K+ L +L G + N+ + L+ +C++G++D +E +TKC
Sbjct: 615 IDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGY 674
Query: 316 SPEVLLHFFSGIIRLYALSDRLD 338
P V H ++ +I RLD
Sbjct: 675 LPSV--HTYTSLIDRMFKDGRLD 695
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
LSG K + + + M +G P+ ++FNSL+ +GD A LF M +
Sbjct: 313 LSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS 372
Query: 175 YKPNSKTYDAFIS---GFSSLGN---VDAMNKWYAANIAAGF---SVNVQTYESLIHGSL 225
P Y+ FI G L N +D + K Y +AA VN + + G
Sbjct: 373 -PPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVG 431
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K F+ + +EMM G +P KV+ LC +K++ KSFL F +N +
Sbjct: 432 K---FEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVE--KSFLLFQEMKRAGVNPD 486
Query: 286 MAQK--LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
+ L+ +C+ G +++ + + SP V+ ++ ++ Y S +L
Sbjct: 487 VYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVT--YTALLHAYLKSKQL 538
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 4/196 (2%)
Query: 88 KAQLVLEWR--LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
KAQ V + LD ML G E Y LI K+ + A VF M G P
Sbjct: 620 KAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVH 679
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+ SLI G + A+ + M++ + PN TY A I G S +G ++ +
Sbjct: 680 TYTSLIDRMFKDGRLDLAMKVLSEMLN-DSCNPNVVTYTAMIDGLSKVGEIEKALNLLSL 738
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G S NV TY +LI G K D+ + +++M S G P+ ++ CA
Sbjct: 739 MEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGL 798
Query: 265 LDRVKSFLKFLLGGGW 280
LD L + W
Sbjct: 799 LDEAHLLLDEMKHTHW 814
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 115/304 (37%), Gaps = 42/304 (13%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K + + A +F M P++ +++LI +G++ A ++E ++
Sbjct: 525 YTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLI 584
Query: 171 SSE---------------EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ PN TY A I G V ++ A +AAG N
Sbjct: 585 GTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQI 644
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y++LI G K D+ + M G +PS+ +++ + +LD L +
Sbjct: 645 VYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEM 704
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
L N ++ ++G +++ L + + SP V+ + AL D
Sbjct: 705 LNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTY--------TALID 756
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICS----YFR------CAA--YDRLDLFLDHI 383
L G+ GK S K + + C+ +R CAA D L LD +
Sbjct: 757 GL-------GKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM 809
Query: 384 KGSY 387
K ++
Sbjct: 810 KHTH 813
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 85/236 (36%), Gaps = 39/236 (16%)
Query: 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFA 127
N + ++ A+I L + L L +++ KG + Y LI GK +
Sbjct: 710 NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEE--KGCSPNVVTYTALIDGLGKTGKADAS 767
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSG------------------------------ 157
+ +F M ++G P+ + LI C +G
Sbjct: 768 LKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQG 827
Query: 158 ---DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ +L L E M S E P + Y I FS G ++ + + + S+N+
Sbjct: 828 FSKKFIASLGLLEEM-ESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNM 886
Query: 215 QT---YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+ Y SLI A + Y EM GI+P + + +++GL K D
Sbjct: 887 TSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDE 942
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 7/193 (3%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VD 196
G +P + +N+L+ +G V + + M S+ + + T F +G D
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMGFRVQKEM-SASGFCMDRSTIGYFAQALCKVGRWAD 257
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A+N + F+++ +I G ++A F+ F M IP++ +L
Sbjct: 258 ALNMLEKED----FNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLL 313
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G +++ K + ++ G N ++ LV YC G + +T C
Sbjct: 314 SGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSP 373
Query: 317 PE-VLLHFFSGII 328
P V + F G I
Sbjct: 374 PGYVAYNIFIGSI 386
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 143/334 (42%), Gaps = 37/334 (11%)
Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
++ L EY L+ + + A F +M A IKP+ ++ SLI A + D+ A+
Sbjct: 127 DKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAV 186
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY----AANIAAGFSVNVQTYES 219
+ E M+S + + N + + ISG++S GN +A W+ A N+ G V Y S
Sbjct: 187 ACTEEMLS-QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV----YNS 241
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ +A + ++V+ +M G ++ + VL G R ++ SF L G
Sbjct: 242 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 301
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+VK + + G + + + LE + K SP ++ ++ I+ YA
Sbjct: 302 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMI--YAMIMDGYA------- 352
Query: 340 VEYSVGRMGKQGLSFKSAEDV------------EMVICSYFRCAAYDRLDLFLDHIKGSY 387
R G +FK ED+ +++ ++ + D+ L++I+ +
Sbjct: 353 ------RGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANR 406
Query: 388 KLRR-ATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
L TY ++ GY + G K V + +K A
Sbjct: 407 LLPTIETYTSILDGYVKGGHIQKALEVFDRIKTA 440
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA ++ + + A V+ M + G+KPD +N L+ A +G + AL + E +
Sbjct: 344 YAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLE-NI 402
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P +TY + + G+ G++ + + AG V +Y SL+ G KAR
Sbjct: 403 QANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQM 462
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
++ +EM++ G++P+ + EG R D K+F F
Sbjct: 463 ENARLMLDEMLANGVVPNERSYTALTEGYA--RAGDVEKAFGMF 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/340 (18%), Positives = 135/340 (39%), Gaps = 12/340 (3%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
Q+ + + + +L ++ +GN L Y ++ ++++ + F ++A G+ P
Sbjct: 248 QAGNMETVEALLAQMEEEGFQGN---LGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSP 304
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+A + ++ +G++ AL + E M PN Y + G++ G+ A K
Sbjct: 305 TAATYGCIVKLFTKAGNMAKALDILEEM-DKHGVSPNKMIYAMIMDGYARGGDFTAAFKV 363
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ ++AG ++ TY L+H KA D E + + ++P+I +L+G
Sbjct: 364 WEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVK 423
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
+ + + G + L+ + +++ L+ + P
Sbjct: 424 GGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNE-- 481
Query: 322 HFFSGIIRLYALSDRLDDVEYSVG---RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
++ + YA R DVE + G RM K+ L+ ++ A +++
Sbjct: 482 RSYTALTEGYA---RAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEV 538
Query: 379 FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F K R TY ++ G+ R G K ++ +M+
Sbjct: 539 FQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQ 578
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D + S+++L++ L ++ + A+L+L+ L + NE Y L
Sbjct: 434 FDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNER---SYTALTEG 490
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +V A +F M+ + + D + +L+ AC SG + A+ +F+ ++ K
Sbjct: 491 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQ-QITDAGLKH 549
Query: 178 NSKTYDAFISGFSSLGNVDA-------MNKW--------YAANIAAGF------------ 210
N TY + G++ G + M K Y + I A F
Sbjct: 550 NRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETL 609
Query: 211 --------SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
VN +TY +LIHG L A D D YE+ + G+
Sbjct: 610 AVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGL 652
>gi|357450593|ref|XP_003595573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484621|gb|AES65824.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 621
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 139/297 (46%), Gaps = 17/297 (5%)
Query: 92 VLEWRLDKMLKGNESCLD-----EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
V+ WR + + +++C + EY+ I +G+ +N+ A+ +F E +G+K ++ +
Sbjct: 138 VINWRRKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVK-ITSTY 196
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
N+L+ A + +G SLF M P+ TY+ IS F L +D M +
Sbjct: 197 NALMGAYMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMN 256
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG---LCARR 263
+ N+ TY LI G + + ++R ++ + S + P++ ++ G L
Sbjct: 257 ELPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLE 316
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVDELEEQLETLTKCNQSPEVLLH 322
K++++ S +K +N+ +++ C YC+ D++ +++ L K E
Sbjct: 317 KMEKIYSLVKD------NVNDMPIIRVMICAYCKSSDADKM-NKVKALLKLIPEKEYRPW 369
Query: 323 FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
+I+LYA + L++++ ++ ++ + + +I +YFR A + L+ F
Sbjct: 370 LNVLLIKLYAEGNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKF 426
>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 10/214 (4%)
Query: 111 YACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y +I GK + V +FT + IKPD+ N+LI + D V +F+ M
Sbjct: 153 YNGVIGAYGKAGDLVQMEKTLFTMRILKHIKPDTVTSNTLIESYGYGRDFVKMEQVFKSM 212
Query: 170 VSS---EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI-AAGFSVNVQTYESLIHGSL 225
++ + +P++KTY+ ++ ++ LG V M +W + + AA F +N+++YE L+ G
Sbjct: 213 TAAKNKQTSRPDAKTYNILMASYARLGEVGKM-EWSCSRMEAANFKLNLRSYEILMTGYG 271
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ S+ + +M+ G+ P L +L C + + L L GW+
Sbjct: 272 EVGAIASMSECFYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEAEELLNDAL--GWQTRPR 329
Query: 286 MAQKLV--KCYCELGRVDELEEQLETLTKCNQSP 317
+ L+ + Y + R ++E E + K +P
Sbjct: 330 TSSYLILLRAYAKERRSSDVEMLTERMAKVGIAP 363
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 18/281 (6%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAM 128
Q W AL+ +L S K L+LE M + LD ++ LI GK + + A+
Sbjct: 3 QADWFALLAALGKQS--KWTLILEVTFRWMQEQKWYRLDNGFHSKLIVTMGKAKQLRMAV 60
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGD----VVTALSLFEIMVSSEEYKPNSKTYDA 184
F ++ G +PD++++N+LI A L + D AL LFE M + KP+ TY+
Sbjct: 61 WFFKEVKRNGHRPDTSLYNALITAHLQAEDKRIGFAKALQLFEEMKTKANCKPDLVTYNI 120
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL- 243
+ G + + ++ + +++ N+ +Y +I KA D +++ M L
Sbjct: 121 LLRGSAQVRDILQVERFFEEMEVEKIHPNLISYNGVIGAYGKAGDLVQMEKTLFTMRILK 180
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----LVKCYCELGR 299
I P ++E R +++ K + K K L+ Y LG
Sbjct: 181 HIKPDTVTSNTLIESYGYGRDFVKMEQVFKSMTAAKNKQTSRPDAKTYNILMASYARLGE 240
Query: 300 VDELEEQLETLTKCN-----QSPEVLLHFFSGIIRLYALSD 335
V ++E + N +S E+L+ + + + ++S+
Sbjct: 241 VGKMEWSCSRMEAANFKLNLRSYEILMTGYGEVGAIASMSE 281
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 137/346 (39%), Gaps = 19/346 (5%)
Query: 77 LITSLQSSSPKKAQLVLEWRLDKMLKGNE---------------SCLDEYACLIALSG-- 119
LI +Q + + V + L++++KG + S + + I + G
Sbjct: 150 LIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLC 209
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+V V +F +M++ G PD +N+LI + ++ A L + + S + P+
Sbjct: 210 RVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDV 269
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY + ISGF LG ++A + + I +G V T+ LI G K + + + +E+
Sbjct: 270 MTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEK 329
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S IP + +++G C + + N ++ C+ R
Sbjct: 330 MASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNR 389
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+ E + L L + P+ + ++ +I + + +D+ V M ++
Sbjct: 390 IHEARDLLRQLKCSDVFPKPFI--YNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTF 447
Query: 360 VEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
++I + + LD+F + T LVA +AG
Sbjct: 448 TILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAG 493
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 5/241 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ ++I+ + +A VL ++M++ G E + + LI GK+ N+ A +
Sbjct: 271 TYTSIISGFRKLGKLEAASVL---FEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMH 327
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + PD F SLI +GD+ L ++++M + PN TY I+
Sbjct: 328 EKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM-KARNVSPNIYTYSVIINALCK 386
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+ + Y +I G KA + D + EM P
Sbjct: 387 DNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVT 446
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ G C + ++ K +L G + LV C + G+ E ++T +
Sbjct: 447 FTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQTAS 506
Query: 312 K 312
+
Sbjct: 507 E 507
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +P + + M+ G+KP+ +++L+ A C ++ F + +
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA-FCKEGMMQQAIKFYVDM 393
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
PN TY + I +GN+ + + G NV TY +LI G A
Sbjct: 394 RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 453
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + +M + G+IP++ ++ G + +DR L L G G K + +
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ C L +++ + + + +C L++
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 3/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF-EIMVSSEEYKPNSKTYDAF 185
A+ + M G+ P+ + SLI A G++ A L E++ E+ N TY A
Sbjct: 386 AIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTAL 443
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G + + + AG N+ +Y +LIHG +KA++ D E+ GI
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P + + + GLC+ K++ K + + G K N + L+ Y + G E
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTE 560
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 6/219 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K +V A +F M+ +G+ PD+ +NS+I G + + FE M
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM- 323
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+P+ TY+A I+ F G + ++Y G NV +Y +L+ K
Sbjct: 324 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 383
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+FY +M +G++P+ +++ C L +L G + N L
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEV-----LLHFF 324
+ C+ R+ E EE + P + L+H F
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 2/203 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y L+ K N +H+ M+ I+ F LI LC +V+ A+ F +
Sbjct: 545 YTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG-LCKNKLVSKAVDYFNRI 603
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ + N+ + A I G V+A + + G + Y SL+ G+ K +
Sbjct: 604 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGN 663
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
++M +G+ + ++ GL +L + +SFL+ ++G G +E +
Sbjct: 664 VLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCIS 723
Query: 290 LVKCYCELGRVDELEEQLETLTK 312
++K + ELG +DE E L K
Sbjct: 724 VLKKHYELGCIDEAVELQSYLMK 746
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 4/243 (1%)
Query: 79 TSLQSSSPKKAQLVLEWRL-DKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136
TSL ++ K L +RL ++ML+ G E + Y LI + + A +F M+
Sbjct: 406 TSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT 465
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
G+ P+ A +N+LI + + ++ AL L + KP+ Y FI G SL ++
Sbjct: 466 AGVIPNLASYNALIHGFVKAKNMDRALELLNEL-KGRGIKPDLLLYGTFIWGLCSLEKIE 524
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
A G N Y +L+ K+ + +EM L I ++ ++
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 584
Query: 257 EGLCARRKLDR-VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+GLC + + + V F + G + N + ++ C+ +V+ E + +
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644
Query: 316 SPE 318
P+
Sbjct: 645 VPD 647
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 14/187 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F+ M+ + P + N L+ G F+ M+ + +P TY+ I
Sbjct: 211 AIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGA-RPTVFTYNIMI 269
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+V+A + G + TY S+I G K D F+EEM +
Sbjct: 270 DCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE 329
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-------------ENMAQKLVKC 293
P + ++ C KL F + + G G K N E M Q+ +K
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 294 YCELGRV 300
Y ++ RV
Sbjct: 390 YVDMRRV 396
>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g54980, mitochondrial; Flags: Precursor
gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 851
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ +N+ A VF+++ +G+KP++ ++ LI C + D AL + M SS + N
Sbjct: 490 RQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSN-IEVNG 548
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I+G +G + A I V+ +Y S+I G K + DS YE
Sbjct: 549 VVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE 608
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
EM GI P++ ++ GLC ++D+ + G K++ L+ +C+
Sbjct: 609 EMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 3/212 (1%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A++V L+K LK N Y+ LI + + A+ V M + I+ + V+ +
Sbjct: 497 ARIVFSNILEKGLKPNNYT---YSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQT 553
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I G A L M+ + + +Y++ I GF G +D+ Y
Sbjct: 554 IINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN 613
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G S NV TY SL++G K D +EM + G+ IP +++G C R ++
Sbjct: 614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESA 673
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ LL G ++ + L+ + LG +
Sbjct: 674 SALFSELLEEGLNPSQPIYNSLISGFRNLGNM 705
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+ +G+K D + +LI ++ +A +LF ++ E P+ Y++ I
Sbjct: 638 ALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLE-EGLNPSQPIYNSLI 696
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF +LGN+ A Y + G ++ TY +LI G LK + Y EM ++G++
Sbjct: 697 SGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLV 756
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I ++ GL + + +V + + N + ++ + G +DE
Sbjct: 757 PDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDE 812
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 93 LEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
LE R + KG + + Y LI K N+ A +F+ + +G+ P ++NSLI
Sbjct: 639 LEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISG 698
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G++V AL L++ M+ + + + TY I G GN+ ++ Y A G
Sbjct: 699 FRNLGNMVAALDLYKKML-KDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVP 757
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ Y +++G K F V + +EEM + P++ I V+ G LD
Sbjct: 758 DEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLD 811
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
N SQ +++LI+ ++ A L L KMLK C L Y LI K N+
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDL---YKKMLKDGLRCDLGTYTTLIDGLLKDGNL 740
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A ++T M+A G+ PD ++ ++ G V + +FE M PN Y+A
Sbjct: 741 ILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM-KKNNVTPNVLIYNA 799
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
I+G GN+D + + + G + T++ L+ G +
Sbjct: 800 VIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQV 840
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
+ Y +I S K N+ A+ + M + GI + SLI + D+V+AL LF+
Sbjct: 305 ETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDK 364
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M E PNS T+ I F G ++ ++Y G + +V ++I G LK +
Sbjct: 365 M-EKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + ++E G + ++ + +L LC + K D L
Sbjct: 424 KHEEALKLFDESFETG-LANVFVCNTILSWLCKQGKTDEATELL 466
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 36/229 (15%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V + +G +PDS +++ + AC + D+ A SL M + P+ +TY + I
Sbjct: 252 ALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVI 311
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-------FDSVDR---- 235
GN+D + ++ G S+NV SLI G K D FD +++
Sbjct: 312 LASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371
Query: 236 ------------------------FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
FY++M LG+ PS+ + +++G +K +
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
G N + ++ C+ G+ DE E L + P V+
Sbjct: 432 FDESFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVV 479
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF VN + + L++ K R D +M+ L +IP P + + L L R L
Sbjct: 158 GFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEA 217
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLH 322
K ++ G + Q L++ R ++ E LE L++ P+ LL+
Sbjct: 218 KELYSRMVAIGVDGDNVTTQLLMRASL---REEKPAEALEVLSRAIERGAEPDSLLY 271
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
+ QL W +K E +D Y ++ G V + A VF M +GI P +A
Sbjct: 264 RAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTA 323
Query: 145 VFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
+N++I LC D V A+ +FE MV + Y PN TY+ I G GN+D ++
Sbjct: 324 TYNAMI-QVLCKKDSVENAVLMFEEMV-KKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIE 381
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G NVQTY I A D + +E+ M G +P++ ++ + R+
Sbjct: 382 RMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEK-MGQGSLPNLDTYNVLISAMFVRK 440
Query: 264 K 264
K
Sbjct: 441 K 441
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
++ P A+ V M +G+ P +N L+ +G + A F + + E + +
Sbjct: 230 IKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFF-LQMKEREVEIDVV 288
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY + GF +G + K + + G + TY ++I K ++ +EEM
Sbjct: 289 TYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEM 348
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G +P++ V+ GL +D+ F++ + G + N ++ +C+ G V
Sbjct: 349 VKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDV 408
Query: 301 DE 302
++
Sbjct: 409 EK 410
>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 1/144 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF +M +G KP+ A++ LI SG V A+ L M+ E +KP+ TY ++G
Sbjct: 39 VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMID-EGFKPDVVTYSVVVNGL 97
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G V+ ++ GF++N Y SLI G KA D +R +EEM G
Sbjct: 98 CKNGRVEEALDYFQTCRXNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDS 157
Query: 250 PILEKVLEGLCARRKLDRVKSFLK 273
+++ L K+D + K
Sbjct: 158 YCYNALIDALTKHGKVDEAMTLFK 181
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 6/204 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
++ M+ +GI+ VF SL+ LC G + ++FE M+ KPN Y I G
Sbjct: 4 LYQEMDEKGIQVPPHVF-SLVIGGLCKEGKLNEGYAVFENMIRKGS-KPNVAIYTVLIDG 61
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
++ G+V+ + I GF +V TY +++G K + +++ G +
Sbjct: 62 YAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGFAIN 121
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE---LEE 305
+++GL ++D + + + G + L+ + G+VDE L +
Sbjct: 122 SMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFK 181
Query: 306 QLETLTKCNQSPEVLLHFFSGIIR 329
++E C+Q+ SG+ +
Sbjct: 182 RMEEEEGCDQTVYTYTILISGMFK 205
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI GK + A +F M +G DS +N+LI A G V A++LF+ M
Sbjct: 125 YSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 184
Query: 171 SSEEYKPNSKTYDAFISG 188
E TY ISG
Sbjct: 185 EEEGCDQTVYTYTILISG 202
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 1/139 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG++ + Y LI K +V A+ + M +G KPD ++ ++ +G V
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL F+ + NS Y + I G G +D + + G + + Y +LI
Sbjct: 106 ALDYFQT-CRXNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALI 164
Query: 222 HGSLKARDFDSVDRFYEEM 240
K D ++ M
Sbjct: 165 DALTKHGKVDEAMTLFKRM 183
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+V + V + G++P+ F++LI G + A+ LF++MV + YKPN +Y
Sbjct: 141 HVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMV-ARGYKPNVHSY 199
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G +G + K G +V Y +++ K R + + +M
Sbjct: 200 SIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKG 259
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL--LGGGWKINENMA-QKLVKCYCELGR 299
GI+P++ ++ GL R L R K L + GG + + +A L+ C+ G
Sbjct: 260 TGILPTVVTYTSLIHGL---RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316
Query: 300 VDELEEQLETLTKCNQSPEV 319
V E L+T+T+ P+V
Sbjct: 317 VSEARVILKTMTEMGVEPDV 336
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 5/246 (2%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVF 131
++ +LI L++ K L L++M GN L ++ LI + K V A +
Sbjct: 268 TYTSLIHGLRNLGRWKEAFGL---LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVIL 324
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
+M G++PD A +N+L+ +VV A +FE+M+S P+ ++ ++G+
Sbjct: 325 KTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRM-PDVFSFSILVNGYCK 383
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
+D + + G + +Y +LI G +AR + +++M S G P++
Sbjct: 384 AKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVT 443
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
+L+ L + LD+ + + G K + ++ C+ G+ + E L+
Sbjct: 444 YSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELS 503
Query: 312 KCNQSP 317
P
Sbjct: 504 VKGLQP 509
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M+ I PD F+ LI G+V A + + M + +P+ TY+ +
Sbjct: 285 AFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM-TEMGVEPDVATYNTLM 343
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G+ V K + I+ G +V ++ L++G KA+ D + ++EM G+I
Sbjct: 344 NGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLI 403
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P ++ GLC R+ + K + G+ N L+ C + G +D+
Sbjct: 404 PDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGL 463
Query: 307 LETLTKCNQSPEVLLH 322
+ P+++ +
Sbjct: 464 FRAMENSGLKPDLVTY 479
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + ++ L+ K + + A +F M +G+ PD+ +N+LI + +
Sbjct: 365 KGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLE 424
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ M S Y PN TY + S G +D + A +G ++ TY +I
Sbjct: 425 AEELFKDM-HSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMI 483
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
G K F + E+ G+ P+ + ++G+C LD
Sbjct: 484 DGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLD 528
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 7/203 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K++ A + M +G P++ V+N+LI G++ TAL + + M+
Sbjct: 270 YGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMI 329
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARD 229
S+ PNS T ++ I G+ ++ + G +N T+ S+IH LK R
Sbjct: 330 SNG-ISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCR- 387
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
FDS F EM+ P+ +L ++ GLC K LL G+ N +
Sbjct: 388 FDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNA 447
Query: 290 LVKCYCELGRVDE----LEEQLE 308
L+ CE G +E L+E LE
Sbjct: 448 LIHGLCEAGSKEEAAKLLKEMLE 470
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM----------------- 169
A+ +F ME G+ P+ +N++I +G + A E M
Sbjct: 216 AIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLIN 275
Query: 170 -----------------VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
+S Y PN+ Y+ I G+ +GN+ + I+ G S
Sbjct: 276 GLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISP 335
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N T SLI G K+ + + EEM++ G + + V+ LC + + D F+
Sbjct: 336 NSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFI 395
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L +K N+ + LV C+ G+ E
Sbjct: 396 MEMLLRNFKPNDGLLTLLVSGLCQNGKQSE 425
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 114/276 (41%), Gaps = 3/276 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F+ + +G+ P N L+ + + + +V + +F+IM P+ + ++ F
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCG-VTPDVYLFSTMVNAF 207
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G VD + + G + NV TY ++IHG K D +F E+M + PS+
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSL 267
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
++ GL + D LK + G+ N + L+ YC +G + + +
Sbjct: 268 VTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDD 327
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ SP + + +I+ Y S++++ E+ + M G ++ +
Sbjct: 328 MISNGISPNSVT--CNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385
Query: 370 CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
C L ++ + ++K LV+G + G
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNG 421
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 135/388 (34%), Gaps = 95/388 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ N+ A+ + M + GI P+S NSLI S + A L E M+
Sbjct: 305 YNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364
Query: 171 SS----------------------------------EEYKPNSKTYDAFISGFSSLG-NV 195
+ +KPN +SG G
Sbjct: 365 TGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQS 424
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-----------------FDSVD---- 234
+A+ WY + GF+ N T +LIHG +A DS+
Sbjct: 425 EAIELWYRL-LEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTL 483
Query: 235 --------------RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
+ EEM+ GI P + +L GLC K++ GG W
Sbjct: 484 ILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA--------GGLW 535
Query: 281 ---KINENMAQK-----LVKCYCELGRVDELEEQLETLT--KCNQSPEVLLHFFSGIIRL 330
K N N ++ YC+ RV+E E+ + + K Q+ V + +IR
Sbjct: 536 HECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVV----YGTLIRA 591
Query: 331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKL 389
Y + + + M +G+ SA +I D + LD + K
Sbjct: 592 YCENGNMREAFRLRDDMRSRGIPQTSA-TYSSLIHGLSNIGLVDSANQLLDEMRKEGLSP 650
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEM 417
Y L+ GY + G K+DS++ EM
Sbjct: 651 NVVCYTALIGGYCKLGQMHKVDSILQEM 678
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 25/214 (11%)
Query: 102 KGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
K N + D Y I + G K V +F M I+ ++ V+ +LI A +G++
Sbjct: 539 KKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM 598
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219
A L + M S S TY + I G S++G VD+ N+ G S NV Y +
Sbjct: 599 REAFRLRDDM-RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTA 657
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
LI G K VD +EM + P+ ++ G C KL +K+ K L
Sbjct: 658 LIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHC---KLGNMKAAAKLL---- 710
Query: 280 WKINENMAQK-----------LVKCYCELGRVDE 302
NE MAQK L +C+ G+++E
Sbjct: 711 ---NE-MAQKGIVPDAVTYNALTNGFCKEGKMEE 740
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 9/255 (3%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE--YACLIALSGKVQ 122
F ++ + +ALI L ++ S ++A +L+ L++ L LD Y LI K
Sbjct: 437 GFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL-----VLDSISYNTLILACCKEG 491
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V + M +GI+PD +N L+ G + A L+ + + P++ TY
Sbjct: 492 KVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNF-PDAYTY 550
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
I G+ V+ K + + N Y +LI + + R ++M S
Sbjct: 551 GIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRS 610
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI + ++ GL +D L + G N L+ YC+LG++ +
Sbjct: 611 RGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHK 670
Query: 303 LEEQLETLTKCNQSP 317
++ L+ ++ N P
Sbjct: 671 VDSILQEMSINNVHP 685
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 1/174 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + N+ A + M ++GI SA ++SLI G V +A L + M
Sbjct: 585 YGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEM- 643
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PN Y A I G+ LG + ++ N TY +I+G K +
Sbjct: 644 RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNM 703
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
+ + EM GI+P + G C K++ + GG +++
Sbjct: 704 KAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDD 757
>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
T2Bo]
gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
Length = 1067
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 9/286 (3%)
Query: 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+QG +P+ + ++ A + + + A+ L + M KPN+ Y I GF +
Sbjct: 725 SQGNEPNEVTYGIMLDAYVNNNRMEEAMDLLQEMKQKGNVKPNTIMYTTLIKGFGQNRQL 784
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
Y ++ G N TY S+I + D + EEMM + P + +
Sbjct: 785 QRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLITFSTI 844
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G C + +D+ L + G K + + L++ + GR+ E+ E +
Sbjct: 845 IKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRLWLCEKLWEQMRIHGI 904
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375
+P + +I++Y S +LD V V R+ + + + + C C R
Sbjct: 905 APSNFT--LTILIKMYGRSGQLDKVFDLVERLPAE---YGFTINAHVYTCLMSACITNGR 959
Query: 376 LDLFLDHIK----GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ LD + GS K TY+ L+ G R L + ++ +M
Sbjct: 960 YNTALDIYRCVKDGSVKPDAKTYETLLQGVTRGNLFAEAVDLLRDM 1005
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 2/190 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+ + + AM ++ M ++G+ ++ +NS+I AC GD+ A +L E M+
Sbjct: 771 YTTLIKGFGQNRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMM 830
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + +P+ T+ I G+ N+D + + G + Y SL+ G +K+
Sbjct: 831 MN-QVEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRL 889
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINENMAQK 289
++ +E+M GI PS L +++ +LD+V ++ L G+ IN ++
Sbjct: 890 WLCEKLWEQMRIHGIAPSNFTLTILIKMYGRSGQLDKVFDLVERLPAEYGFTINAHVYTC 949
Query: 290 LVKCYCELGR 299
L+ GR
Sbjct: 950 LMSACITNGR 959
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 38/257 (14%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+ V FA V + G +PD F +LI G + AL LF+ M+ E ++PN
Sbjct: 113 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID-EGFQPNVV 171
Query: 181 TYDAFISGFSSLGN--------------------------VDAMNK---------WYAAN 205
TY I+G +GN +D++ K ++
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G S ++ TY SL+H ++ V +M++ I+P + I V++ LC K+
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 291
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
+ ++ G + + L+ +C +DE + + + + +P+V+ ++
Sbjct: 292 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVIS--YT 349
Query: 326 GIIRLYALSDRLDDVEY 342
+I Y ++D Y
Sbjct: 350 TLINGYCKIHKIDKAMY 366
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K+ + AM++F M + PD+ +N+L+ G + A++LF MV
Sbjct: 348 YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMV 407
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY + +++ A A+ + ++Q Y +I G +A +
Sbjct: 408 ARGQM-PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGEL 466
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
++ + + S G+ PS+ ++ GLC R L+
Sbjct: 467 EAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLN 502
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 3/243 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++A L+ K+++ + + T M++ G+ P+ N LI + V A S+ +
Sbjct: 67 DFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKI 126
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++P+ T+ I G G + + I GF NV TY +LI+G K +
Sbjct: 127 LKLG-HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN 185
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ R M P + I +++ LC R++ + ++G G +
Sbjct: 186 TSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTS 245
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV C L + L + P+V++ FS ++ ++ + V M +
Sbjct: 246 LVHALCNLCEWKHVTTLLNQMVNSKILPDVVI--FSTVVDALCKEGKVTEAHEIVDMMIQ 303
Query: 350 QGL 352
+G+
Sbjct: 304 RGV 306
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 1/203 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K V A + M +G++PD + +L+ ++ A+ +F++MV + + P+
Sbjct: 287 KEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR-KGFAPDV 345
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+Y I+G+ + +D + + + +TY +L++G + E
Sbjct: 346 ISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHE 405
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M++ G +P + +L+ LC R L+ + LK + + + ++ C G
Sbjct: 406 MVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGE 465
Query: 300 VDELEEQLETLTKCNQSPEVLLH 322
++ + L+ P V +
Sbjct: 466 LEAARDLFSNLSSKGLHPSVWTY 488
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 4/197 (2%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD +F++++ A G V A + ++M+ +P+ TY
Sbjct: 258 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQ-RGVEPDVVTYTTL 316
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
+ G +D K + + GF+ +V +Y +LI+G K D +EEM
Sbjct: 317 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 376
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
IP ++ GLC +L + ++ G + L+ C+ ++E
Sbjct: 377 IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMA 436
Query: 306 QLETLTKCNQSPEVLLH 322
L+ + N +P++ ++
Sbjct: 437 LLKAIEASNLNPDIQVY 453
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 82/192 (42%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF M +G PD + +LI + A+ LFE M +E+ P++KTY+ +
Sbjct: 329 AVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCR-KEWIPDTKTYNTLM 387
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +G + + +A G ++ TY L+ K R + + + + +
Sbjct: 388 YGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLN 447
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I + +++G+C +L+ + L G + ++ C+ G ++E +
Sbjct: 448 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 507
Query: 307 LETLTKCNQSPE 318
+ + SP+
Sbjct: 508 FMEMDGNDCSPD 519
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G L Y+ L+ K +++ AM + ++EA + PD V+N +I +G++
Sbjct: 409 RGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEA 468
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF + SS+ P+ TY+ I G G ++ NK + S + TY ++
Sbjct: 469 ARDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIA 527
Query: 222 HGSLKARDFDSVDRFYEEMMSLG 244
G L+ + + EEM++ G
Sbjct: 528 RGFLQNNETLRAIQLLEEMLARG 550
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 138/310 (44%), Gaps = 5/310 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA L+ + GK + A +F M ++G+KP V+ +L+ A SG + A S E M
Sbjct: 127 YAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMK 186
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + +P+ TY I + D + A G N TY S+I G KA F
Sbjct: 187 SVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMF 246
Query: 231 DSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ +D +M+ G P + L + ++D+++ + G K +
Sbjct: 247 EQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNT 306
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
++K Y + G ++++ ++ + K +P ++ ++ +I ++ + ++ ++ +M
Sbjct: 307 MIKSYGKAGMYEKMKTVMDFMEKRFFTPTIVT--YNTVIEVFGKAGEIEKMDQHFLKMKH 364
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSG 408
G+ S +V +Y + D++D + H++ S L ++ +++ Y +AG
Sbjct: 365 LGVKPNSITYCSLV-SAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLK 423
Query: 409 KLDSVINEMK 418
K+ + M+
Sbjct: 424 KMGELFLAMR 433
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N+ A+ + M+ +G+K D + +LI D+ +A L +
Sbjct: 427 YTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELR 486
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN Y++ I+GF ++ NV+ Y + G +++TY SLI G LK+
Sbjct: 487 GAG-LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL 545
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+ EM+S GI+P ++ GLC + + + + L+ + G
Sbjct: 546 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNG 592
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + N+ A V+ M G P++ F L+ GD+ A S+F M
Sbjct: 287 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK 346
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P T I G G + ++ GF Y ++I G +K +
Sbjct: 347 DAN-ILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNI 405
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y EM +GI PS +++G C +D L + G K++ L
Sbjct: 406 NLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTL 465
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ +C+ + E L L SP ++
Sbjct: 466 IDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 497
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 4/184 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G ++N A +F M+ I P +I +G LF VS + + P
Sbjct: 333 GDIEN---AFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVS-QGFVPT 388
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y+ I GF GN++ + Y G + + TY SLI G K + D +
Sbjct: 389 CMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLN 448
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M G+ I +++G C RR + L L G G N + ++ + +
Sbjct: 449 DMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMN 508
Query: 299 RVDE 302
V+E
Sbjct: 509 NVEE 512
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y+ + L N +A+ + M A G P F S+I AC+ G+V
Sbjct: 69 RGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 128
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL L + MV+ + N + + G+ GN+ + +G N TY LI
Sbjct: 129 ALRLKDDMVNCGK-SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLI 187
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
G K + + FY EM + GI S+ L +LEG
Sbjct: 188 DGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEG 224
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 18/246 (7%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPN 178
K N+ A +V+ M GI P + + SLI C G+ + AL L M + K +
Sbjct: 401 KEGNINLASNVYREMCEVGITPSTVTYTSLIDG-FCKGNNIDLALKLLNDM-KRKGLKMD 458
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
K Y I GF ++ + ++ AG S N Y S+I G + + Y+
Sbjct: 459 IKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYK 518
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M++ GI + +++GL +L +L G ++ L+ C G
Sbjct: 519 KMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKG 578
Query: 299 RVDELEEQLETLTKCNQSPEVLL-------HFFSGIIR-LYALSDRL-------DDVEYS 343
+ + + LE + N P VL+ HF G ++ + L D + D++ Y
Sbjct: 579 QFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYD 638
Query: 344 VGRMGK 349
+ GK
Sbjct: 639 ILVNGK 644
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L L+ D KG + + Y LI K +++ A + + G+ P+ ++NS+I
Sbjct: 442 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 501
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
+V A+ L++ MV+ E + KTY + I G G + + + ++ G
Sbjct: 502 TGFKNMNNVEEAIDLYKKMVN-EGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGI 560
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + + LI+G F++ + E+M +IPS+ I ++ G
Sbjct: 561 LPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 608
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + NV A+ ++ M +GI D + SLI L SG ++ A + M+
Sbjct: 497 YNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEML 556
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ + + I+G + G + K +V Y +LI G K +
Sbjct: 557 S-KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNL 615
Query: 231 DSVDRFYEEMMSLGIIP 247
R ++EM+ G++P
Sbjct: 616 QEAFRLHDEMLDRGLVP 632
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 5/163 (3%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYACLIALSGKVQNV 124
+ ++F ++++IT ++ + + + L KM+ C L Y LI K +
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDL---YKKMVNEGIPCDLKTYTSLIDGLLKSGRL 545
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+A + T M ++GI PD LI G A + E M + + P+ Y+
Sbjct: 546 LYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM-NGKNMIPSVLIYNT 604
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
I+G GN+ + + + G + TY+ L++G K
Sbjct: 605 LIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKG 647
>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 766
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + GI P + ++ LI G V AL L E MV S KP+ TY +
Sbjct: 342 AFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSN-VKPSLVTYSSLF 400
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + A G+ +V +Y +LI+G + RD S + EM G +
Sbjct: 401 DGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSV 460
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
P+ +++ G C R++LD+ +L G ++N
Sbjct: 461 PNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLN 497
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 157/402 (39%), Gaps = 54/402 (13%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIAL 117
L+ + + + +S+ LI L + L L +++M++ N + L Y+ L
Sbjct: 346 LEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDL---IEEMVQSNVKPSLVTYSSLFDG 402
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K ++ +F ++ A+G K D +N+LI + D+ +A L M + P
Sbjct: 403 LCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSV-P 461
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
NS T++ I GF +D + + + G +N+ T ++ A +F+ F+
Sbjct: 462 NSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFT------CNIMADEFNREGHFW 515
Query: 238 E------EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
E E+ LGI+P+ V++ LC +K ++ L +L L+
Sbjct: 516 EALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLI 575
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
Y + + + K P ++ ++ +I +++ ++ + Y M K+G
Sbjct: 576 DGYAKQSNPTKALLLYAKMLKVGIPPSIVT--YTMLINMFSNRSKMQEAYYLFKEMIKKG 633
Query: 352 L------------------SFKSA-------------EDVEMVIC---SYFRCAAYDRLD 377
L KSA +V C YF+ D+ D
Sbjct: 634 LVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKAD 693
Query: 378 LFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+ +K + TY L+ GY+ G S ++ + NEMK
Sbjct: 694 FLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMK 735
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------DVVTALSLFEIMVSSEEYKPNS 179
F +F ++ G P+ + +++ C G D+V A + E M + E P
Sbjct: 231 FIRSLFEELKDSGPSPNVFTY-TIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGE-SPTV 288
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY A+I G G V+ + +N Y ++IH + + E+
Sbjct: 289 VTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLED 348
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDR 267
M S GI P+ +++GLC + ++++
Sbjct: 349 MRSHGISPTAYSYSILIDGLCKKGQVEK 376
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 5/212 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + + A+ F +M +PD +N+L+ +G V A SLF M
Sbjct: 73 YNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSM- 127
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ TY I F + + + S V +Y S+I+G K R
Sbjct: 128 EGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKV 187
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + +EEM G P ++ GLC +++L K L ++ G++ ++ L
Sbjct: 188 DQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTAL 247
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C R+ E + + K +P+++ H
Sbjct: 248 IEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTH 279
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 36/232 (15%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSK 180
Q + A + T M G +PD F +LI LC+ D + A LF+ M + + P+
Sbjct: 220 QRLHEAKDLLTVMVENGFQPDKITFTALI-EGLCTTDRIKEAFVLFQGM-AKQGCAPDLV 277
Query: 181 TYDAFISG------------------------------FSSLG---NVDAMNKWYAANIA 207
T+ +S F LG D +
Sbjct: 278 THTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMAR 337
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G NV TY + G ++ R + M+ GI P + +++G C +LD
Sbjct: 338 RGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDM 397
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ ++++ G N LV +C G+V+ + E L T+ + P+V
Sbjct: 398 AEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDV 449
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 1/161 (0%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G+ + A + M +G+ P+ + + + + A F M+ + +P+
Sbjct: 320 GRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLE-QGIEPD 378
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y+ + GF +D K +G N+ TY +L+ + +++
Sbjct: 379 MVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLH 438
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
M+S G P + ++ GL + D SFL + G
Sbjct: 439 TMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 17/301 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V ME I+ D +N +I LC L + ++ P+ TY+ I
Sbjct: 208 ALCVLEDMERDSIQADIYTYNIMIDK-LCRIKRSARAFLLLKRMRKDDLTPDECTYNTLI 266
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF G ++ + + +V TY ++I G + R D EM G++
Sbjct: 267 NGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVM 326
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L G C L + L G IN+ M L+ +C++G + + ++
Sbjct: 327 PSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQI 386
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV--EMVI 364
L+++ + P+V+ +S +I ++ + + + RM K G+ DV +I
Sbjct: 387 LKSMLEDGIDPDVVT--YSALINGMCRMAKMHETKEILSRMQKSGI---LPNDVLYTTLI 441
Query: 365 CSYFRCAAYDRLDL--FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
C Y + A Y ++ L F+D + ++ L+ + R G+ + F +Y
Sbjct: 442 CYYCK-AGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGM------ITEAEHFRQY 494
Query: 423 M 423
M
Sbjct: 495 M 495
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 7/231 (3%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ A+ M +GI PD VF+ LI + + AL LF M P+SKT+
Sbjct: 766 IDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCM-KCLHLSPSSKTFS 824
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I+G +D ++ + G N Y +L++ + + D R EEM ++
Sbjct: 825 AMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAI 884
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
GI+P+ ++ GLC KL+ ++ G L+ C+ ++ +
Sbjct: 885 GIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADA 944
Query: 304 EEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ C +V+ + +G+ + +SD LD G M +GL
Sbjct: 945 LHLKRLMELCRLKVDVVSYNVLITGLCKDKHISDALD----LYGEMKSKGL 991
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 6/250 (2%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
Q KA+ +L+ L+ G + + Y+ LI ++ + + + M+ GI P
Sbjct: 376 QVGEISKAKQILKSMLED---GIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILP 432
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
+ ++ +LIC +G V AL F + + N ++A + F G + +
Sbjct: 433 NDVLYTTLICYYCKAGYVKVALKHF-VDIYRRGLVANPVIHNALLRAFYREGMITEAEHF 491
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
S N ++ +I Y++M+ G P++ + +L GLC
Sbjct: 492 RQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQ 551
Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321
L + K F+ LL ++E L+ C+ G +DE + E + K N P++
Sbjct: 552 GGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHT 611
Query: 322 H--FFSGIIR 329
+ SG R
Sbjct: 612 YTILLSGFCR 621
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 44/241 (18%)
Query: 111 YACLIALSGKVQ--NVPFAMHVFTSMEA-QGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
Y CL L+G + V A +VF + +G+ D +NSL+ L G+V T +
Sbjct: 647 YTCL--LNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMS 704
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M +E Y PNS +Y+ + G+ G Y + G + TY LI G +
Sbjct: 705 DMYQNEVY-PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSEC 763
Query: 228 RDFDSVDRFYEEMMSLGII-----------------------------------PSIPIL 252
D +F E+M+ GI PS
Sbjct: 764 GLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTF 823
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD---ELEEQLET 309
++ GL + LD+ L +L G + N LV C +G +D L+E+++
Sbjct: 824 SAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKA 883
Query: 310 L 310
+
Sbjct: 884 I 884
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A H M I +S FN +I + G +V A S+++ MV + PN TY +
Sbjct: 488 AEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYG-HSPNVCTYQNLL 546
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ ++ + +V+ +T+ +L+ G K D E+M+ +
Sbjct: 547 RGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCL 606
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
P I +L G C + K+ L+ +L G
Sbjct: 607 PDIHTYTILLSGFCRKGKILPALVMLQMMLEKG 639
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 1/196 (0%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIK-PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+++ K ++ A V M+ + P+ +++LI SG + A+ LFE MVS ++
Sbjct: 251 SITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQ 310
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
P++ TY+A I+GF VD K G + NV Y +L++G K +
Sbjct: 311 ILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAK 370
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++EM SLG+ P ++ C ++D LK + + + ++
Sbjct: 371 EVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGL 430
Query: 295 CELGRVDELEEQLETL 310
C GR +E LE L
Sbjct: 431 CREGRFEEAXGMLERL 446
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSF 271
N+ TY +LI+G + +EEM+S I+P ++ G C K+DR
Sbjct: 278 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKI 337
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
++F+ G N L+ +C+ GR++E +E + + P+ + ++ +I +
Sbjct: 338 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTV--GYTTLINFF 395
Query: 332 ALSDRLDD 339
+ R+D+
Sbjct: 396 CRAGRVDE 403
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 1/169 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M++ G+KPD+ + +LI +G V A+ L + M ++ + ++ T++ +
Sbjct: 369 AKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENK-CRADTVTFNVIL 427
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + G +N +Y +++ + + + M+ G++
Sbjct: 428 GGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVL 487
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
P ++L LC K+ L LL G+K N LV+ C
Sbjct: 488 PHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELIC 536
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 1/192 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+ G P+ +++L+ G + A +F+ M S KP++ Y I
Sbjct: 334 ALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEM-KSLGLKPDTVGYTTLI 392
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+ F G VD + + T+ ++ G + F+ E + G+
Sbjct: 393 NFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVY 452
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
+ VL LC +L + + +LG G + + +L+ CE G+V +
Sbjct: 453 LNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMA 512
Query: 307 LETLTKCNQSPE 318
L L + PE
Sbjct: 513 LLGLLELGFKPE 524
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 124/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K Q V A+ + + + +KPD + +L+ + L + + M+
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEML 324
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ + + G G ++ + G S N+ Y +LI K R F
Sbjct: 325 CLR-FSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKF 383
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ ++ M +G+ P+ +++ C R KLD SFL ++ G K++ L
Sbjct: 384 HEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSL 443
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ G + E + + P V+ ++ ++ Y +++ M +
Sbjct: 444 INGHCKFGDISAAEGFMAEMINKKLEPTVVT--YTSLMGGYCSKGKINKALRLYHEMTGK 501
Query: 351 GLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
G++ S ++ FR D + LF + + + K R TY+ ++ GY G K
Sbjct: 502 GIA-PSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 560
Query: 410 LDSVINEM 417
+ EM
Sbjct: 561 AFEFLKEM 568
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 7/252 (2%)
Query: 65 FAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIALSGKVQ 122
F + + F ++ALI SL + +A+L+ + R+ K+ L+ N+ Y+ LI + +
Sbjct: 361 FGVSPNLFVYNALIDSLCKGRKFHEAELLFD-RMGKIGLRPNDV---TYSILIDMFCRRG 416
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
+ A+ M G+K +NSLI GD+ A M++ ++ +P TY
Sbjct: 417 KLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMIN-KKLEPTVVTY 475
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ + G+ S G ++ + Y G + ++ T+ +L+ G +A + + EM
Sbjct: 476 TSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAE 535
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P+ ++EG C + + FLK + G + + L+ C G+ E
Sbjct: 536 WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASE 595
Query: 303 LEEQLETLTKCN 314
+ ++ L K N
Sbjct: 596 AKVFVDGLHKGN 607
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 22/267 (8%)
Query: 99 KMLKGNESCLDEYACLIALSG---KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
KM+ S L E L AL K ++ AM +F M + GI+PD ++ +I + LC
Sbjct: 180 KMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRS-LC 238
Query: 156 SGDVVTALSLFEIMVSSEEYKP---NSKTYDAFISGFSSLGNVDAMNKWYAANIA---AG 209
+ LS + M++ E N Y+ I G V W A I AG
Sbjct: 239 E---LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV-----WEAVGIKKDLAG 290
Query: 210 --FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
+V TY +L++G K ++F+ +EM+ L PS + ++EGL R K++
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEE 350
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
+ +K ++ G N + L+ C+ + E E + + K P + +S +
Sbjct: 351 ALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVT--YSIL 408
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSF 354
I ++ +LD +G M GL
Sbjct: 409 IDMFCRRGKLDTALSFLGEMVDTGLKL 435
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 83/235 (35%), Gaps = 39/235 (16%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI S K ++ + M +G+KPD ++ S+I A +GD A ++++M+
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 171 SSEEYKPNSKTYDAFISGFS----------------------------------SLGNVD 196
+E PN TY A I+G + G VD
Sbjct: 710 -NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVD 768
Query: 197 AMNKWYAAN-IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
N I G N TY LI G + + M+ G+ P +
Sbjct: 769 MQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC---ELGRVDELEEQL 307
+ LC R + + + G + + L+ C E+G+ EL ++
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 112/324 (34%), Gaps = 34/324 (10%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A M +GI PD+ + LI LC + +F + + N Y +
Sbjct: 561 AFEFLKEMTEKGIVPDTYSYRPLIHG-LCLTGQASEAKVFVDGLHKGNCELNEICYTGLL 619
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ + G +++ Y LI GSLK +D +EM G+
Sbjct: 620 HGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLK 679
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++ ++ G NE ++ C+ G V+E E
Sbjct: 680 PDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVL 739
Query: 307 -------------------LETLTK--CNQSPEVLLH------------FFSGIIRLYAL 333
L+ LTK + V LH ++ +IR +
Sbjct: 740 CSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCR 799
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRAT 393
R+++ + RM G+S M+ R ++L+ + + R
Sbjct: 800 QGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVA 859
Query: 394 YDFLVAGYRRAGLSGKLDSVINEM 417
Y+ L+ G AG GK + NEM
Sbjct: 860 YNTLIHGCCVAGEMGKATELRNEM 883
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 139 IKPDSAVFNSLICAC----LCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
++P S+V N + C L G D+ A+ L ++ N+ TY+ I GF
Sbjct: 743 MQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKG--LLANTATYNMLIRGFCRQ 800
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G ++ ++ I G S + TY ++I+ + D + M GI P
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
++ G C ++ + +L G N ++
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSR 896
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 19/247 (7%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSS 172
LI GK + + M G K D +N+LI C C G + TA F M
Sbjct: 229 LIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALI-NCFCKFGRMETAYGYFAAM-KR 286
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
E N T+ F+ F G V K +A G ++N TY LI G+ KA D
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+EM+ G+ ++ +++GLC RK+ + L+ + G + NE + L+
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406
Query: 293 CYC-------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
+ LG + E++ N+ E+ + + +I+ +LD+ + +
Sbjct: 407 GHFMNKNSEKALGLLSEMK---------NKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 346 RMGKQGL 352
+M + GL
Sbjct: 458 KMDESGL 464
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 37 VSSSNPLISRLLQV-PVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLE 94
+S LI L V + + K+ L +D + + ++ + +S +A +L+
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492
Query: 95 WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154
LD + N CL+E A+ +F M +G+ D V+ +L+ L
Sbjct: 493 KILDSGFQPNNGCLNE----------------AVQLFNEMVHKGMSLDKVVYTALLDGYL 536
Query: 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G++ A +L M+ S + + Y FISGF +L + + ++ I G + +
Sbjct: 537 KQGNLHDAFALKAKMIDSG-LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 595
Query: 215 QTYESLI 221
Y LI
Sbjct: 596 AVYNCLI 602
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA LI G+ + A+ VF M G++P +N L+ A SG V A ++F+ M
Sbjct: 324 YALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMR 383
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ +Y +S + + +++ K++ GF N+ TY +LI G KA D
Sbjct: 384 RDRIF-PDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDV 442
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLE--GLC 260
+ + YE+M GI + IL +++ G C
Sbjct: 443 EKMMEVYEKMRLSGIKANQTILTTIMDASGRC 474
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 9/226 (3%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
L KM G+ + Y L+ G+ A +F M++ G +P SA+ +I
Sbjct: 172 LSKM--GSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEP-SAITYQIILKTFVE 228
Query: 157 GDVVT-ALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
GD A +FE ++ ++ KP+ K Y I + GN + K +++ + G +
Sbjct: 229 GDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQS 288
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
TY SL+ + V + Y++M I P + +++ R+ + S +
Sbjct: 289 TVTYNSLMSFET---SYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFE 345
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+L G + L+ + G V++ + +++ + P++
Sbjct: 346 EMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDL 391
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 103/266 (38%), Gaps = 28/266 (10%)
Query: 75 DALITSLQSSSPKKAQLVLEWRLDKMLKGN---------ESCLDE-----------YACL 114
+A+ +QSS P+ + + + L ++G+ E+ LDE Y +
Sbjct: 201 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 260
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
I + K N A VF+SM +G+ + +NSL+ +V +++ M S+
Sbjct: 261 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSD- 316
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+P+ +Y I + + + + AG + Y L+ + +
Sbjct: 317 IQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAK 376
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++ M I P + +L ++ + F K + G++ N L+K Y
Sbjct: 377 TVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGY 436
Query: 295 CELGRVDELEEQLETL----TKCNQS 316
+ V+++ E E + K NQ+
Sbjct: 437 AKANDVEKMMEVYEKMRLSGIKANQT 462
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKP 177
G V+NV + + + G++PD +N++IC CS + + A+ LFE++ +P
Sbjct: 604 GCVENV---LELLREIIKYGLEPDIVTYNTMICG-YCSLKIFSKAIKLFEVLKCGRT-QP 658
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ T+ I + G +D +++ + G N+ TY LI G K + +S Y
Sbjct: 659 NAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELY 718
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E+M+ + P+I +++GLC + ++ + +G + L++ YC++
Sbjct: 719 EKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKV 778
Query: 298 GRVDE 302
GR+ E
Sbjct: 779 GRLAE 783
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 3/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F+ A+G+K D +F+S++ A + GD+ A+ ++ M+ E PN TY I+G
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLK-EGISPNVVTYSILINGL 390
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G V + + G +V TY SLI G K+ + Y M+ G +P +
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+ ++ GL + +D F + G +N + L+ L R + +
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYIL 510
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ P+V+ ++ +++ A RLD+ ++ K+G S
Sbjct: 511 MGMYKVIPDVVT--YTVLVKGLAEQGRLDEALALFFQLLKKGFS 552
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+V ++ A+ V+T M +GI P+ ++ LI +G V+ A +F + + +P+
Sbjct: 357 RVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFG-QILKQGLEPSV 415
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY + I GF N+ Y + G +V LI+G + D RF+ +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK-FLLGGGWKINENMAQK--LVKCYCE 296
+ G+ + + +++G C R L R + LK ++L G +K+ ++ LVK E
Sbjct: 476 AVKRGLTLNNYLFNALIDG-CFR--LKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAE 532
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
GR+DE L K SP+ +++
Sbjct: 533 QGRLDEALALFFQLLKKGFSPDHIIY 558
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 3/225 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ F +G+ ++ +FN+LI C L ++ I++ + P+ TY +
Sbjct: 469 ALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMY-ILMGMYKVIPDVVTYTVLV 527
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + G +D + + GFS + Y +LI G K RD + + ++ M S GI
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIF 587
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I I ++ ++ V L+ ++ G + + ++ YC L + +
Sbjct: 588 PDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKL 647
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
E L P + F+ +I Y R+DD M ++G
Sbjct: 648 FEVLKCGRTQPNAIT--FTILIDAYCKDGRMDDAMLIFSSMLERG 690
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF + QG++P ++SLI S ++ L+ IM+ + + P+ I
Sbjct: 399 ACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR-KGHVPDVVVCSMLI 457
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G +D +++ + G ++N + +LI G + + + Y M +I
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI 517
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
P + +++GL + +LD + LL G+ + + L+ +C+
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCK 567
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 7/208 (3%)
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
VFNS L G+V L+ +V P + + G + + ++
Sbjct: 211 VFNSF----LKRGEVEKGLNFHRALVE-RGLVPKIVDCNKILKGLCMGNQIGVASDFFDM 265
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
+ +G S N+ T+ +LI+ K D Y M+ GI+P + I ++ GL K
Sbjct: 266 MVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGK 325
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
L+ S L G K++ + ++ Y +G + + E + K SP V+ +
Sbjct: 326 LEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVT--Y 383
Query: 325 SGIIRLYALSDRLDDVEYSVGRMGKQGL 352
S +I + R+ + G++ KQGL
Sbjct: 384 SILINGLCRNGRVLEACGVFGQILKQGL 411
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 2/207 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
D M++ G L ++ LI + K + A ++ M +GI PD +++ LI
Sbjct: 263 FDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFR 322
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+G + SLF M + K + + + + + +G++ + Y + G S NV
Sbjct: 323 AGKLEEGNSLFS-MALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY LI+G + + +++ G+ PS+ +++G C L +
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIM 441
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
L G + + L+ G +DE
Sbjct: 442 LRKGHVPDVVVCSMLINGLSRQGMMDE 468
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 8/193 (4%)
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
YE + + LK + + F+ ++ G++P I K+L+GLC ++ F +
Sbjct: 207 VYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMM 266
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYAL 333
+ G N L+ YC+ R+DE + + P+++++ +G+ R L
Sbjct: 267 VRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKL 326
Query: 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRA 392
+ ++ R K + S+ ++ +Y R + ++++ +K
Sbjct: 327 EEGNSLFSMALARGVKMDVVIFSS-----IMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381
Query: 393 TYDFLVAGYRRAG 405
TY L+ G R G
Sbjct: 382 TYSILINGLCRNG 394
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 2/168 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ++ +P++ F LI A G + A+ +F M+ +PN TY I
Sbjct: 644 AIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGP-EPNILTYSCLI 702
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ N ++ + Y + S N+ +Y LI G K + ++ + ++
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLL 762
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
P + ++ G C +L +L G + +++ QK + Y
Sbjct: 763 PDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGI-MPDDLLQKALAEY 809
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 36/232 (15%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V FA V + G +PD F +LI G + AL LF+ M+ E ++PN TY
Sbjct: 96 VGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID-EGFQPNVVTYG 154
Query: 184 AFISGFSSLGN--------------------------VDAMNK---------WYAANIAA 208
I+G +GN +D++ K ++ +
Sbjct: 155 TLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ 214
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
G S ++ TY SL+H ++ V +M++ I+P + I V++ LC K+
Sbjct: 215 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEA 274
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ ++ G + + L+ +C +DE + + + + +P+V+
Sbjct: 275 HEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVI 326
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 3/243 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++A L+ K+++ + + T M++ G+ P+ N LI + V A S+ +
Sbjct: 47 DFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKI 106
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ ++P+ T+ I G G + + I GF NV TY +LI+G K +
Sbjct: 107 LKLG-HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN 165
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
+ R M P + I +++ LC R++ + ++G G +
Sbjct: 166 TSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTS 225
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV C L + L + P+V++ FS ++ ++ + V M +
Sbjct: 226 LVHALCNLCEWKHVTTLLNQMVNSKILPDVVI--FSTVVDALCKEGKVTEAHEIVDMMIQ 283
Query: 350 QGL 352
+G+
Sbjct: 284 RGV 286
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 38/202 (18%)
Query: 129 HVFT---SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
HV T M I PD +F++++ A G V A + ++M+ +P+ TY
Sbjct: 238 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQ-RGVEPDVVTYTTL 296
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH------GSL-------------- 225
+ G +D K + + GF+ +V +Y +LI+ G L
Sbjct: 297 MDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETP 356
Query: 226 --------------KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
K + F+ EM++ I+P++ I V++ LC K+
Sbjct: 357 DAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDV 416
Query: 272 LKFLLGGGWKINENMAQKLVKC 293
+ ++ G + N +KC
Sbjct: 417 VDMMIKRGVEPNAVKVFDTMKC 438
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194
+A G++P +A F +LI A +G A+ F M +P + Y+A + + G
Sbjct: 129 QAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGG 188
Query: 195 VDAMN-KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V + Y +AAG N TY L+ G K + ++EM+ GI P++
Sbjct: 189 VVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHT 248
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+L +C +L ++ L + G +E + C+ GRVDE E+LE L +
Sbjct: 249 ILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRR 307
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 3/212 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ SME +G PD +N+ + +G V A+ E + + + K Y I
Sbjct: 263 AENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLI 322
Query: 187 SGFSSLGNVDAMNKWYAANI-AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
G G + + Y + A FS ++ Y +I G +A D F++EM
Sbjct: 323 DGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRF 382
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P +L+ LC LD +S + + ++ N ++ C+ VDE +
Sbjct: 383 TPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQ 442
Query: 306 QLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+ + + P V+ + G+ R + L +
Sbjct: 443 VFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEE 474
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 19/229 (8%)
Query: 108 LDEYACLIA---LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
L Y+CLI L+G+ + F ++ +E PD ++ +I C +G + A +
Sbjct: 315 LKGYSCLIDGLFLAGRYEE-GFQCYM-EVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFA 372
Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
F+ M + + P++ Y+ + G++D + ++ T+ +IHG
Sbjct: 373 FFDEM-KEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGL 431
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS-------------F 271
K + D + ++ M+ +G P++ +++GL +L+ + F
Sbjct: 432 CKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLF 491
Query: 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ LG + QKLV C+ G+V + + L + P+V+
Sbjct: 492 LRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVV 540
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+V N P ++ + ++ A +K DS L+ + SG V+ A L ++ S P+
Sbjct: 483 EVGNNP-SLFLRLTLGANQVK-DSESLQKLVDSMCQSGQVLKAYKLLRGIMDSG-VVPDV 539
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ ++G + N+D + + GFS++ TY +LI L+A ++ +++
Sbjct: 540 VTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQD 599
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
++ +G PS+ I ++ LC KL + +F
Sbjct: 600 ILHIGGTPSLSIYNSIMRSLCRMNKLSQAINF 631
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 4/233 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL-SLFEIM 169
Y CLI + V AM + M +G PD + +++ LC + + +L E M
Sbjct: 244 YNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVM-GFLCQDKRIKEVRNLMEKM 302
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V + P+ TY+ + S G+ D ++ GF V+ Y ++++
Sbjct: 303 VKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGR 362
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D EM++ G P + V+ GLC K++ K L+ + G K N
Sbjct: 363 MDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTA 422
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDV 340
L+ C+ G E E + T + +P + + G+ R LS+ D V
Sbjct: 423 LLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVV 475
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 3/226 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M +G PD + +++ G V A + + M KPN+ +Y A +
Sbjct: 366 AKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYK-HGCKPNTVSYTALL 424
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G GN + + ++ N TY ++HG + EM++ G
Sbjct: 425 NGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFF 484
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + +++ LC +K++ K F++ L G +N ++ +C+ +D
Sbjct: 485 PTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSL 544
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
L+ + N+ P+ + F+ II R+++ +M K+GL
Sbjct: 545 LDDMYLNNKHPDAVT--FTAIIDALGKKGRIEEATVYTMKMLKKGL 588
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/303 (19%), Positives = 126/303 (41%), Gaps = 11/303 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++N AM V T M+ G++P+ + N+ I + + + AL E M P
Sbjct: 184 AGKLRN---AMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERM-QLVGITP 239
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY+ I G+ L V+ + A G + +Y +++ + + V
Sbjct: 240 NVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLM 299
Query: 238 EEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
E+M+ + P ++ L D FL+ G+++++ +V +C
Sbjct: 300 EKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCM 359
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356
GR+D +E + + SP+V+ ++ ++ ++++ + + +M K G +
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVT--YTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNT 417
Query: 357 AEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
++ +C + + + ++ + + TY ++ G RR G + V+
Sbjct: 418 VSYTALLNGLCQHGN--SLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVV 475
Query: 415 NEM 417
EM
Sbjct: 476 REM 478
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 122/301 (40%), Gaps = 5/301 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++ + + ME GI+ D FN +I C V ALS+ M+ Y+P+
Sbjct: 97 KLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKL-GYEPDR 155
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++GF V + G+ ++ Y ++I K + + F++E
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+ GI P++ ++ GLC + L ++ N L+ + + G+
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V E +E E + + + P+++ +S +I L DR+D+ M +G
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVT--YSSLINGLCLHDRIDEANQMFDLMVSKG-CLADVVS 332
Query: 360 VEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + + D + LF + + TY+ L+ G+ +AG K ++M
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392
Query: 419 F 419
F
Sbjct: 393 F 393
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 9/245 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y+ L+ K V A +F M I PD ++SLI LC D + A +F++M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING-LCLHDRIDEANQMFDLM 321
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
VS + + +Y+ I+GF V+ K + G N TY +LI G +A D
Sbjct: 322 VS-KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D F+ +M GI P I +L GLC +L++ + + ++
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRM 347
+++ C+ G+V+E +L+ P+++ + SG+ L +VE +M
Sbjct: 441 VIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL----CTKGLLHEVEALYTKM 496
Query: 348 GKQGL 352
++GL
Sbjct: 497 KQEGL 501
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 2/224 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+DKM++ G + + Y +I K + V A F +E +GI+P+ + +L+
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S A L M+ ++ PN TY A + F G V + + + ++
Sbjct: 238 SSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI+G D ++ ++ M+S G + + ++ G C ++++ + +
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
G N L++ + + G VD+ +E + SP++
Sbjct: 357 SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 2/207 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KMLK G E L+ + V A+ + M G KPD +N++I +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ V A F+ + + +PN TY A ++G + + + I + NV
Sbjct: 203 TKRVNDAFDFFK-EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +L+ +K +EEM+ + I P I ++ GLC ++D +
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDE 302
+ G + L+ +C+ RV++
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVED 348
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + +V A F+ M+ GI PD +N L+ +G++ AL +FE M
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM- 426
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + TY I G G V+ + + G ++ TY +++ G
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLL 486
Query: 231 DSVDRFYEEMMSLGIIPS 248
V+ Y +M G++ +
Sbjct: 487 HEVEALYTKMKQEGLMKN 504
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 117/297 (39%), Gaps = 41/297 (13%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
N+ AM F M+ G KP ++ FN+LI +G+ + L Z+M E +PN +TY
Sbjct: 157 NMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTY 216
Query: 183 DAFISGFSSLGNVDAMNKWYAA--NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
+ + + + N+ M W +A+G + TY ++ + + + EM
Sbjct: 217 NVLVRAWCNKXNI--MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEM 274
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + P+ ++ G C K+ F+ + G + N + L+K + +
Sbjct: 275 QNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDR 334
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
D + E L + + P+V+ FS I+ ++ + +D
Sbjct: 335 DGVNEVLTLMEEFGVKPDVIT--FSTIMNAWSAAGFMD---------------------- 370
Query: 361 EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+C ++F D +K + Y L GY RAG K + ++N M
Sbjct: 371 --------KCR-----EIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAM 414
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 7/214 (3%)
Query: 109 DEYACLIALSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
+E C I + G K + A+ M+ G++P+ VFNSLI + D V +
Sbjct: 282 NERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFI---DAVDRDGVN 338
Query: 167 EIMVSSEEY--KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
E++ EE+ KP+ T+ ++ +S+ G +D + + + A + Y L G
Sbjct: 339 EVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGY 398
Query: 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284
++A + + + M+ G P++ + ++ G C+ +++ + + G N
Sbjct: 399 VRAGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNL 458
Query: 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
+ L+ Y E + + EE L+ + + N PE
Sbjct: 459 KTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPE 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 109/286 (38%), Gaps = 42/286 (14%)
Query: 83 SSSPKKAQLVLE-WRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
+ P+++Q +LZ D+ ++ N L Y L+ N+ A +V M A G++P
Sbjct: 190 AGEPEESQKLLZLMSQDENVRPN---LRTYNVLVRAWCNKXNIMKAWNVVYKMVASGLQP 246
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D+ +N++ A +G+ A + M +S +PN +T I G+ G + ++
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSN-VQPNERTCCIIIGGYCKEGKIKEALQF 305
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
G N+ + SLI G + A D D V+ M G+ P + ++ A
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365
Query: 262 RRKLDRVKSF-----------------------------------LKFLLGGGWKINENM 286
+D+ + L ++ G+ N M
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVM 425
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
++ +C GR++ + E + +C +P L F +I Y
Sbjct: 426 FTTIINGWCSAGRMEYAIKIFEKMCECGIAPN--LKTFETLIWGYG 469
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M I+PD+ V++ L + +G+ A + M+ S + PN + I+G+
Sbjct: 375 IFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSG-FHPNVVMFTTIINGW 433
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ K + G + N++T+E+LI G +AR + + M + P
Sbjct: 434 CSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEK 493
Query: 250 PILEKVLEGLCA---RRKLDRVKSFLK 273
L V E A +++ +R+ S +K
Sbjct: 494 TTLLLVAEAWRATGLKKEANRILSAVK 520
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYK 176
GK V A MEA+GIKP+S FN+LI C G A ++++ + S
Sbjct: 235 GKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN---CLGRAKYASEAYKVLQEMRSAGLT 291
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
P+ TY I F+ GN+ + + AG S NV TY LI +KA +
Sbjct: 292 PDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKL 265
Y +M GI+P I VL+ L + KL
Sbjct: 352 YFDMKKKGILPD-AITATVLQQLAGKCKL 379
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 18/249 (7%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
+IA G+ + M F ++ G KP++ + +I + + +G+VV A+ L + M+ +
Sbjct: 20 VIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTG 79
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+P++ + + G +D K +A+ + G + TY LI + + +
Sbjct: 80 -LEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEA 138
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
++EM G PS P V++ C +++ LK +L ++ L+
Sbjct: 139 TLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITA 198
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI-IRLYALSDRLDDVEYSVGRMGKQGL 352
GR + E E + K SG+ + + + LD G+ GK GL
Sbjct: 199 VSRTGRTELACEIFERMKK------------SGVAVNTVSFNAMLD----CCGKAGKVGL 242
Query: 353 SFKSAEDVE 361
+++ +++E
Sbjct: 243 AYQFMDEME 251
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I + K + AM V M + + PD NSLI A +G A +FE M
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S N+ +++A + G V ++ A G N T+ +LI+ +A+
Sbjct: 217 KS-GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYA 275
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ +EM S G+ P +
Sbjct: 276 SEAYKVLQEMRSAGLTPDV 294
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 6/229 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS----LF 166
Y+ LI++ GK AM +F+ M G +PD++V+N+LI A L S D AL+ F
Sbjct: 112 YSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKALAKAIGYF 171
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E KPN TY+ + F+ NV+ +N + + S ++ T+ ++ K
Sbjct: 172 QKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGK 231
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P + +++ +++ +++ K LL + +
Sbjct: 232 NGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLPT 291
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
++ Y + D+ E+ + +T +P + H +I +Y D
Sbjct: 292 FNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTH--ESLIYMYGFCD 338
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 124/313 (39%), Gaps = 48/313 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C++ L K N+ A+ + M+ G+ P+ ++ ++ GD A ++E MV
Sbjct: 195 YGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV 254
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN-----VQTYESLIHGSL 225
S+ KP+ Y+ + F G +D A + N ++TY S++ G +
Sbjct: 255 SAG-LKPDIVIYNILVHAFCKAGRMDK-----ALGVLENIEANRLLPTIETYTSILDGYV 308
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + ++ + + G+ P + +L GL R+++ + L +L G NE
Sbjct: 309 KGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNER 368
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L + Y G V++ + + K N + +++ + +++
Sbjct: 369 SYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVA--YGALLKACC------------- 413
Query: 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
K G ++AE + + D L H R TY ++ G+ R G
Sbjct: 414 ---KSGAMQRAAEVFQQIT------------DAGLKH-------NRITYCTMLDGWARKG 451
Query: 406 LSGKLDSVINEMK 418
K ++N+M+
Sbjct: 452 ELSKARDLLNDMQ 464
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 143/334 (42%), Gaps = 37/334 (11%)
Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
++ L EY L+ + + A F +M A IKP+ ++ SLI A + D+ A+
Sbjct: 13 DKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAV 72
Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY----AANIAAGFSVNVQTYES 219
+ E M+S + + N + + ISG++S GN +A W+ A N+ G V Y S
Sbjct: 73 ACTEEMLS-QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIV----YNS 127
Query: 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279
++ +A + ++V+ +M G ++ + VL G R ++ SF L G
Sbjct: 128 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 187
Query: 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+VK + + G + + + LE + K SP ++ ++ I+ YA
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMI--YAMIMDGYA------- 238
Query: 340 VEYSVGRMGKQGLSFKSAEDV------------EMVICSYFRCAAYDRLDLFLDHIKGSY 387
R G +FK ED+ +++ ++ + D+ L++I+ +
Sbjct: 239 ------RGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 292
Query: 388 KLRR-ATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
L TY ++ GY + G K V + +K A
Sbjct: 293 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTA 326
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/215 (18%), Positives = 89/215 (41%), Gaps = 8/215 (3%)
Query: 96 RLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
RL ++ S LD Y K N+ A+ VF ++ G++P +NSL+
Sbjct: 292 RLLPTIETYTSILDGYV-------KGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAK 344
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ + A + M+++ PN ++Y A G++ G+V+ + ++++
Sbjct: 345 ARQMENARLMLNEMLANG-VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 403
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y +L+ K+ ++++ G+ + +L+G + +L + + L +
Sbjct: 404 AYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDM 463
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
G+ ++ +K G +E+ E L +
Sbjct: 464 QKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVM 498
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 40/237 (16%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
D + S+++L++ L ++ + A+L+L L + NE Y L
Sbjct: 320 FDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNER---SYTALTEG 376
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+ +V A +F M+ + + D + +L+ AC SG + A +F+ ++ K
Sbjct: 377 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQ-QITDAGLKH 435
Query: 178 NSKTYDAFISGFSSLGNV----DAMNKW-----------YAANIAAGF------------ 210
N TY + G++ G + D +N Y + I A F
Sbjct: 436 NRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETL 495
Query: 211 --------SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
VN +TY +LIHG L A D D YE+ + G+ + +L GL
Sbjct: 496 AVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGL 552
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 115/308 (37%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI ++ A+ VF + G+ PD +N+LI G+V A LF M+
Sbjct: 125 YNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMI 184
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY++ I G + + + AG N +TY SLI+G A +
Sbjct: 185 E-QSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMW 243
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R ++EM S G+IP + + LC ++ K ++ G K N L
Sbjct: 244 KESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTL 303
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y G + + + P FF+ +I YA +D M +
Sbjct: 304 LHGYAAEGCFANMNSLVNLMVSKGIVPN--HRFFNILINAYARCGMMDKAMLIFEDMQNK 361
Query: 351 GLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGK 409
G+ VI S R D L F + A Y L+ G G K
Sbjct: 362 GM-IPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVK 420
Query: 410 LDSVINEM 417
+I+EM
Sbjct: 421 AKELISEM 428
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 3/194 (1%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA L+ E D KG +A +I+ ++ + A+H F M G+ P AV+
Sbjct: 350 KAMLIFE---DMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYR 406
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
LI C G++V A L M++ + P K + + I+ G V +
Sbjct: 407 CLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQ 466
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G NV T+ SL+ G + + + M S+GI P+ I +++G C ++D
Sbjct: 467 TGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDD 526
Query: 268 VKSFLKFLLGGGWK 281
+ + +L G K
Sbjct: 527 ALTVFRDMLHKGVK 540
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 5/260 (1%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++++LI L ++ K++ VLE +D ++ N + + +G + ++ VF
Sbjct: 194 TYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKE---SVRVF 250
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M + G+ P NS I A + A +F+ MV KPN +Y + G+++
Sbjct: 251 KEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP-KPNIISYSTLLHGYAA 309
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G MN ++ G N + + LI+ + D +E+M + G+IP
Sbjct: 310 EGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 369
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
V+ LC +LD ++ G +E + + L++ C G + + +E + +
Sbjct: 370 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMM 429
Query: 312 KCNQSPEVLLHFFSGIIRLY 331
+ P + +F S I L+
Sbjct: 430 NKDIPPPGVKYFSSIINNLF 449
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 1/186 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G +P+ FNSL+ G++ A +L + M +S +PN Y + G+ G
Sbjct: 464 MVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM-ASIGIEPNCYIYGTLVDGYCKNG 522
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D + + G Y ++HG +AR + + + EM+ G SI
Sbjct: 523 RIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYG 582
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
VL GLC D L+ L K + ++ ++GR E +E ++
Sbjct: 583 VVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTY 642
Query: 314 NQSPEV 319
P V
Sbjct: 643 GLVPTV 648
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 17/258 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +A +F +M ++G P+ +++LI +G V A +FE M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 615
Query: 171 SSEEY---------------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S++ +PN TY A + GF V+ K A G N
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 675
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y++LI G K D EM G ++ +++ ++ D L +
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
L N + +++ C++G+ DE + ++ + + P V+ ++ +I + +
Sbjct: 736 LENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT--YTAMIDGFGMIG 793
Query: 336 RLDDVEYSVGRMGKQGLS 353
+++ + RMG +G++
Sbjct: 794 KIETCLELLERMGSKGVA 811
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 19/242 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M QG PD++ ++ ++ + + A LFE M + TY +
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM-KRGGLVADVYTYTIMV 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ KW+ G + NV TY +LIH LKA+ + +E M+S G +
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----------------L 290
P+I +++G C ++++ + + G + +M K L
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ RV+E + L+ ++ P ++ + +I +LD+ + M +
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEMSEH 703
Query: 351 GL 352
G
Sbjct: 704 GF 705
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
++VP F + +P+ + +L+ S V A L + M S E +PN
Sbjct: 618 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIV 676
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
YDA I G +G +D + GF + TY SLI K + D + +M+
Sbjct: 677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKML 736
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ I ++++GLC K D ++ + G + N ++ + +G+++
Sbjct: 737 ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIE 796
Query: 302 ELEEQLETLTKCNQSP 317
E LE + +P
Sbjct: 797 TCLELLERMGSKGVAP 812
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 13/210 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G P +FNSL+ A SGD A L + MV + P Y+ I
Sbjct: 359 VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG-HMPGYVVYNILIG-- 415
Query: 190 SSLGNVDAMN--------KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
S G+ D++N K Y+ +AAG +N S A ++ EM+
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G IP KVL LC K++ + + GG + +V +C+ G ++
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ + + + +P V+ ++ +I Y
Sbjct: 536 QARKWFNEMREVGCTPNVVT--YTALIHAY 563
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 5/209 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + + LD++ + +Q +DALI L + +AQ E + + G + L
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ---EVKTEMSEHGFPATLYT 711
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV+ A V + M P+ ++ +I G A L ++M
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM- 770
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY A I GF +G ++ + + G + N TY LI K
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EEM KV+EG
Sbjct: 831 DVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M A P+ +++L+C CL + + +M+ Y P+ K +++ +
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY-PSPKIFNSLV 379
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI------HGSLKARDFDSVDRFYEEM 240
+ + G+ K + G Y LI SL D ++ Y EM
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ G++ + + LC+ K ++ S ++ ++G G+ + + K++ C ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 301 D 301
+
Sbjct: 500 E 500
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P + +N LI A L D + + SL +S + + T F +G
Sbjct: 232 RPSRSTYNCLIQAFL-KADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG------ 284
Query: 200 KWYAANI---AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
KW A F + Y LI G +A F+ F M + +P++ +L
Sbjct: 285 KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G +++L R K L ++ G + + LV YC G + L+ + KC
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 317 P 317
P
Sbjct: 405 P 405
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 17/258 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +A +F +M ++G P+ +++LI +G V A +FE M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMC 615
Query: 171 SSEEY---------------KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
S++ +PN TY A + GF V+ K A G N
Sbjct: 616 GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQI 675
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
Y++LI G K D EM G ++ +++ ++ D L +
Sbjct: 676 VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
L N + +++ C++G+ DE + ++ + + P V+ ++ +I + +
Sbjct: 736 LENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT--YTAMIDGFGMIG 793
Query: 336 RLDDVEYSVGRMGKQGLS 353
+++ + RMG +G++
Sbjct: 794 KIETCLELLERMGSKGVA 811
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 100/242 (41%), Gaps = 19/242 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A V M QG PD++ ++ ++ + + A LFE M + TY +
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGG-LVADVYTYTIMV 525
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G ++ KW+ G + NV TY +LIH LKA+ + +E M+S G +
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK----------------L 290
P+I +++G C ++++ + + G + +M K L
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ +C+ RV+E + L+ ++ P ++ + +I +LD+ + M +
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEMSEH 703
Query: 351 GL 352
G
Sbjct: 704 GF 705
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
++VP F + +P+ + +L+ S V A L + M S E +PN
Sbjct: 618 KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIV 676
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
YDA I G +G +D + GF + TY SLI K + D + +M+
Sbjct: 677 YDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKML 736
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
P++ I ++++GLC K D ++ + G + N ++ + +G+++
Sbjct: 737 ENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIE 796
Query: 302 ELEEQLETLTKCNQSP 317
E LE + +P
Sbjct: 797 TCLELLERMGSKGVAP 812
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 13/210 (6%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M +G P +FNSL+ A SGD A L + MV + P Y+ I
Sbjct: 359 VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG-HMPGYVVYNILIG-- 415
Query: 190 SSLGNVDAMN--------KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
S G+ D++N K Y+ +AAG +N S A ++ EM+
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G IP KVL LC K++ + + GG + +V +C+ G ++
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ + + + +P V+ ++ +I Y
Sbjct: 536 QARKWFNEMREVGCTPNVVT--YTALIHAY 563
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 5/209 (2%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
V + + LD++ + +Q +DALI L + +AQ E + + G + L
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ---EVKTEMSEHGFPATLYT 711
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV+ A V + M P+ ++ +I G A L ++M
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM- 770
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +PN TY A I GF +G ++ + + G + N TY LI K
Sbjct: 771 EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
D EEM KV+EG
Sbjct: 831 DVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM M A P+ +++L+C CL + + +M+ Y P+ K +++ +
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY-PSPKIFNSLV 379
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI------HGSLKARDFDSVDRFYEEM 240
+ + G+ K + G Y LI SL D ++ Y EM
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
++ G++ + + LC+ K ++ S ++ ++G G+ + + K++ C ++
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 301 D 301
+
Sbjct: 500 E 500
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P + +N LI A L D + + SL +S + + T F +G
Sbjct: 232 RPSRSTYNCLIQAFL-KADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG------ 284
Query: 200 KWYAANI---AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
KW A F + Y LI G +A F+ F M + +P++ +L
Sbjct: 285 KWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL 344
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G +++L R K L ++ G + + LV YC G + L+ + KC
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 317 P 317
P
Sbjct: 405 P 405
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 6/223 (2%)
Query: 54 QIKTTL---DSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
++K TL D V F +Q S+ LI L + +A + + +D +L +
Sbjct: 64 KVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVM-- 121
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + V A +++ M + I PD +N+L+ CL G + A+ LF M+
Sbjct: 122 YSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQML 181
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KP+ T++ + G G + A I +V TY SL+ G +
Sbjct: 182 -LKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQE 240
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+ + M G+ P + ++ GLC + +D + LK
Sbjct: 241 NKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLK 283
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSEEYKPNSKTYDAF 185
A VF +M +G+ PD ++ +I LC +V A++L + M S+ PN+ TY +
Sbjct: 243 ATFVFNTMARRGVTPDVHSYSVMING-LCKTKMVDEAVNLLKEM-HSKSMAPNTVTYSSL 300
Query: 186 ISGFSSLGNVDAMNKWYAANIAA--GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
I G G + + W N G +V TY SL+ K D ++
Sbjct: 301 IDGLHKSGRI--FDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQ 358
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
GI P I +++GLC +L + + LL G+ ++
Sbjct: 359 GIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLD 398
>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
H + M G+ PD LI A +G AL +FE MV E Y P + Y+A +
Sbjct: 267 HFWAMMLEDGLVPDDVSHCHLIEALGRAGQAEEALRVFEKMVQ-EGYGPTTMAYNALVFN 325
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
F S+G++D K+Y + N TY +I LK R + +++M++ G++P
Sbjct: 326 FISVGDLDRSIKYYKDMVDNNCPPNSDTYCKMIRALLKTRRVADALQMFDDMLAQGVLPD 385
Query: 249 IPILEKVLEGLC 260
I+ +E LC
Sbjct: 386 TGIITSFIEPLC 397
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M P+S + +I A L + V AL +F+ M++ + P++ +FI
Sbjct: 339 YKDMVDNNCPPNSDTYCKMIRALLKTRRVADALQMFDDMLA-QGVLPDTGIITSFIEPLC 397
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+ G A Y + AG +++++TY+ L+ + +V +EEM G
Sbjct: 398 TFGPPHAALMIYQKSRKAGCTISLKTYKLLLERLARFGKSGTVLNIWEEMQESGYPSDKE 457
Query: 251 ILEKVLEGLCARRKLD 266
I E ++ GLC K+D
Sbjct: 458 IYEFIVNGLCNVGKVD 473
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
Query: 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
F++LI CLC V S + + + + Y+ + G++ G VD + ++A
Sbjct: 214 FSALI-ECLCRRSHVGVASSLVQAARGQPFHLDKQVYNDVLGGWARFGRVDKLQHFWAMM 272
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G + ++ LI +A + R +E+M+ G P+ ++ + L
Sbjct: 273 LEDGLVPDDVSHCHLIEALGRAGQAEEALRVFEKMVQEGYGPTTMAYNALVFNFISVGDL 332
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
DR + K ++ N + K+++ + RV
Sbjct: 333 DRSIKYYKDMVDNNCPPNSDTYCKMIRALLKTRRV 367
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIM 169
Y+ L+ K V A +F M I PD ++SLI LC D + A +F++M
Sbjct: 263 YSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING-LCLHDRIDEANQMFDLM 321
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
VS + P+ +Y+ I+GF V+ K + G N TY +LI G + D
Sbjct: 322 VSKGCF-PDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGD 380
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D F+ +M S G+ P I +L GLC L++ + + ++
Sbjct: 381 VDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTT 440
Query: 290 LVKCYCELGRVDE 302
+++ C+ G+V++
Sbjct: 441 VIQGMCKTGKVED 453
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 122/299 (40%), Gaps = 5/299 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K++ + + ME GI+ D FN +I C V ALS+ M+ Y+P+
Sbjct: 97 KMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKL-GYEPDR 155
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++GF V + G+ ++ Y ++I K R + F++E
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKE 215
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+ GI P++ ++ GLC + + L+ ++ N L+ + + G+
Sbjct: 216 IGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGK 275
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
V E +E E + + + P+++ +S +I L DR+D+ M +G F
Sbjct: 276 VLEAKEIFEEMVRMSIDPDIVT--YSSLINGLCLHDRIDEANQMFDLMVSKG-CFPDVVS 332
Query: 360 VEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+I + + D + LF + TY+ L+ G+ + G K ++M
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM 391
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 4/225 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+DKM++ G + Y +I K + V A+ F + +GI+P+ + +L+
Sbjct: 178 VDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCN 237
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
SG A L M+ + PN TY A + F G V + + + ++
Sbjct: 238 SGRWNDAARLLRDMIK-RKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIV 296
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKF 274
TY SLI+G D ++ ++ M+S G P + ++ G C A+R D +K F K
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRK- 355
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
+ G N L++ + ++G VD+ +E + SP++
Sbjct: 356 MSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDI 400
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V M +F M +G+ ++ +N+LI GDV A F M
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM- 391
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S P+ TY+ + G G ++ + + +++ TY ++I G K
Sbjct: 392 DSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKV 451
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + + G+ P I ++ GLC + V++ + G N++M
Sbjct: 452 EDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSML--- 508
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
C + G + E ++ + C +P +L
Sbjct: 509 --CLGD-GDITISAELIKKMLSCGYAPSLL 535
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 4/255 (1%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F + +++ LI L S + + ++++ G + Y LI K ++
Sbjct: 349 GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMER--NGCSPNVSTYGALIDGFAKAGDLV 406
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A ++ M G P+ V+ S++ S A SL E M S++ PN+ T++ F
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKM-STDNCPPNTVTFNTF 465
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G G V+ + G S N++TY ++ G LK EM G+
Sbjct: 466 IKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM 525
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
++ + G C K + L +L GG K + L YC G+V +
Sbjct: 526 ELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQ 585
Query: 306 QLETLTKCNQ-SPEV 319
L+ L+ + PEV
Sbjct: 586 LLDKLSAGGKWVPEV 600
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
+P+ +V+N+LI C V + L + + PN TY IS S +GNV+
Sbjct: 246 QPNVSVYNALING-FCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELAL 304
Query: 200 KWYAANIAAGFSVNVQTYESLIHGS-LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+A G S NV T+ SL+ G ++ R ++++ + M G P++ ++ G
Sbjct: 305 AVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALN-IWNRMAEEGFEPNVVAYNTLIHG 363
Query: 259 LCARRKLDRVKS 270
LC+ K+ S
Sbjct: 364 LCSHGKMGEAVS 375
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 39/221 (17%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A++++ M +G +P+ +N+LI G + A+S+ M PN TY A I
Sbjct: 338 ALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM-ERNGCSPNVSTYGALI 396
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF+ G++ ++ + + G NV Y S+++ ++ F E+M +
Sbjct: 397 DGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCP 456
Query: 247 PSIPILEKVLEGLCARRKLD----------------RVKSFLKFLLG------------- 277
P+ ++GLC +++ +K++ + L G
Sbjct: 457 PNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALEL 516
Query: 278 ------GGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
G ++N + +C +G+ EE L+ L K
Sbjct: 517 VTEMEEKGMELNLVTYNTIFGGFCNVGK---FEEALKLLGK 554
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG E L Y + V A+ + M G+KPD+ +N+L A G V T
Sbjct: 523 KGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKT 582
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ L + + + ++ P Y + + G + V+ + + G +N T+ +L+
Sbjct: 583 AIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALV 642
Query: 222 HG 223
G
Sbjct: 643 RG 644
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 15/286 (5%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M+ KP+S F++LI +GDV L E M + + Y A I
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEM-EKMGLEGDVFVYSALI 241
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF S G+++ + + + + NV TY L++ K + + + + M +
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVR 301
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + + +GL + L ++ G + N ++ C+ GRVD+
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGI 361
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD-VEYSVGRMGKQGLSFKSAEDV---EM 362
LET+ K + P+V+ +S +++ ++D+ V+ M K+ F DV +
Sbjct: 362 LETMAKKGKKPDVVT--YSTLVKGLCGVGKIDEAVDLLNLLMSKE---FHIKPDVFAFNL 416
Query: 363 VI---CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
VI C R R ++ ++ + TY+ L+ GY AG
Sbjct: 417 VIQELCKQRRLRHAKR--VYYTMVERGFPSNIVTYNILIDGYLSAG 460
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 5/226 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAF 185
AM +F M+ + PD +N++I LC G +V A LF+ M E KPNS T+ A
Sbjct: 148 AMDLFCMMKRNCLIPDCVSYNTVING-LCKGKRLVEAKELFKEM-KGGECKPNSVTFSAL 205
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I GF G+V+ G +V Y +LI G D + + EM+ +
Sbjct: 206 IDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNV 265
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P++ ++ LC ++K L + G + + L + GR + +
Sbjct: 266 TPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIK 325
Query: 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
L+ + K + P + ++ II R+DD + M K+G
Sbjct: 326 VLDLMVKRGEEPNNVT--YNAIINGLCKEGRVDDALGILETMAKKG 369
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 113/259 (43%), Gaps = 12/259 (4%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
F S+ +++ LI S+ L L W+ D + G Y LI K+Q +
Sbjct: 441 GFPSNIVTYNILIDGYLSAGKLTKALEL-WK-DAVDSGISPNAATYTVLINGLCKMQMLS 498
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A +F A G +P + +N+L+ + V A +LF+ M ++ + P+ +++
Sbjct: 499 IAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNAN-HDPDVVSFNII 557
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I G G+V++ + + + T+ LI+ LK D YE M+S G
Sbjct: 558 IDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGH 617
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P + + +L+G + K ++V S L+ + ++ + ++ C C + + ++E+
Sbjct: 618 VPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEK 677
Query: 306 QLETLT---------KCNQ 315
L + KCN+
Sbjct: 678 ILPKFSQHTSVGASIKCNE 696
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 2/226 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD M+K G E Y +I K V A+ + +M +G KPD +++L+
Sbjct: 327 LDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCG 386
Query: 156 SGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
G + A+ L +++S E KP+ ++ I + + Y + GF N+
Sbjct: 387 VGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNI 446
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY LI G L A +++ + GI P+ ++ GLC + L K
Sbjct: 447 VTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNK 506
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
G + + L+ C V++ + + N P+V+
Sbjct: 507 KRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVV 552
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 111/281 (39%), Gaps = 9/281 (3%)
Query: 59 LDSVDIFAFNSSQFSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L+ ++ F + ALI+ S ++ + + L K + N + Y+CL+
Sbjct: 222 LEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPN---VVTYSCLMNA 278
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
K Q A + +M ++PD + L +G A+ + ++MV E +P
Sbjct: 279 LCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGE-EP 337
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N+ TY+A I+G G VD G +V TY +L+ G D
Sbjct: 338 NNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLL 397
Query: 238 EEMMS--LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295
+MS I P + V++ LC +R+L K ++ G+ N L+ Y
Sbjct: 398 NLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYL 457
Query: 296 ELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALS 334
G++ + E + SP + +G+ ++ LS
Sbjct: 458 SAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLS 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 101/246 (41%), Gaps = 3/246 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A V+ +M +G + +N LI L +G + AL L++ V S PN+
Sbjct: 423 KQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSG-ISPNA 481
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G + + + A+G V Y +L+ + + ++E
Sbjct: 482 ATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQE 541
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M + P + +++G ++ K L +L + L+ + +LG+
Sbjct: 542 MRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQ 601
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
+DE E + C P+ +L F +++ Y+L + + V + +M + + S
Sbjct: 602 LDEAASLYERMVSCGHVPDAVL--FDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLT 659
Query: 360 VEMVIC 365
++ C
Sbjct: 660 STILAC 665
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%)
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
GF +NV + L+ G ++ D + M +IP V+ GLC ++L
Sbjct: 124 GFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEA 183
Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
K K + GG K N L+ +C+ G V+E LE + K +V ++
Sbjct: 184 KELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVY 237
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 72 FSWDALITSLQSSSP-KKAQLVLEWRLDKMLKGNESCLDEYAC----LIALSGKVQNVPF 126
F+++ +I L + +A+ ++ +D+ CL + ++ALS + +
Sbjct: 338 FTYNTVINCLSKNGELDEAKGIVNQMVDR------GCLPDTTTFNTLIVALSSQ-NRLEE 390
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + +G+ PD FN LI A GD + LFE M SS P+ TY+ I
Sbjct: 391 ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG-CTPDEVTYNILI 449
Query: 187 SGFSSLGNV----DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
S+G + D +N+ + G + TY ++I K + + +++M +
Sbjct: 450 DHLCSMGKLGNALDLLNEMESN----GCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDA 505
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
GI S +++GLC +++D ++ ++ G + N ++ YC+ G + +
Sbjct: 506 QGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKK 565
Query: 303 LEEQLETLT 311
+ LET+T
Sbjct: 566 AADILETMT 574
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 3/228 (1%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
+++ LI +L SS + + L+ + +KG + + LI KV + + +F
Sbjct: 374 TFNTLIVAL--SSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFE 431
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M++ G PD +N LI G + AL L M S ++ TY+ I
Sbjct: 432 EMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM-ESNGCPRSTVTYNTIIDALCKK 490
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
++ + + A G S + T+ +LI G KA+ D E+M+ G+ P+
Sbjct: 491 MRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITY 550
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+L C + + + L+ + G++I+ L+ C+ GR
Sbjct: 551 NSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 598
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A VF M+AQGI + FN+LI + + A L E MV
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E +PN+ TY++ ++ + GN+ A GF ++V TY +LI+G KA
Sbjct: 540 K-EGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 598
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ M GI P+ V++ L R L
Sbjct: 599 QVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNL 633
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M +GI+PD N+LI A + V TA+ + E M SS P+ T+ + GF
Sbjct: 184 VYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM-SSHGVAPDETTFTTLMQGF 242
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G+++A + A + AG S T LI+G K + + ++ ++ G P
Sbjct: 243 IEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQ 302
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ GLC + + +L G + ++ C + G +DE
Sbjct: 303 VTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 5/258 (1%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKV 121
D F + ++ L+ L S K +LE ++M +G + + LI +
Sbjct: 154 DTFGVQADTVVFNHLLNVLVEGSKLK---LLESVYNEMTGRGIQPDVVTLNTLIKALCRA 210
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
V A+ + M + G+ PD F +L+ + G + AL + M+ + P T
Sbjct: 211 HQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAG-CSPTGVT 269
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I+G+ +G V+ + IA GF + TY + +HG + + + M+
Sbjct: 270 VNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLML 329
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G P + V+ L +LD K + ++ G + L+ R++
Sbjct: 330 QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLE 389
Query: 302 ELEEQLETLTKCNQSPEV 319
E + LT SP+V
Sbjct: 390 EALDLARELTVKGLSPDV 407
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 1/172 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M G P N LI G V AL + ++ + ++P+ TY+ F+
Sbjct: 251 ALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIA-DGFEPDQVTYNTFV 309
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G+V K + G +V TY ++I+ K + D +M+ G +
Sbjct: 310 HGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL 369
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
P ++ L ++ +L+ + L G + L+ C++G
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG 421
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 3/157 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A + M +G++P++ +NS++ G++ A + E M ++ ++ +
Sbjct: 524 KAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM-TANGFEIDV 582
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY I+G G K G + Y +I + + + E
Sbjct: 583 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFRE 642
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
M +G P + V LC R +K FL+
Sbjct: 643 MTEVGEPPDALTYKIVFRSLC--RGGGPIKEAFDFLV 677
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K +N P A+ ++ M+ G +PD ++ ++ G + A ++F M
Sbjct: 522 YNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEM- 580
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ Y + + +GNV+ +WY A + AG NV T SL+ L+
Sbjct: 581 KRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRL 640
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M+ LG+ PS+
Sbjct: 641 SDAYNLLQSMLRLGLQPSL 659
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 4/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+ + A+ VF M+ G +PD + +LI +G + AL +++ M
Sbjct: 417 YNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKM- 475
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P++ TY I+ G++ + +K + + G N+ TY +I KAR++
Sbjct: 476 QEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNY 535
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y +M + G P V+E L L+ ++ + W +E + L
Sbjct: 536 PTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLL 595
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYALSDRLDDVEYSVGRMG 348
V + ++G V++ E + + P V S +R++ LSD + ++ S+ R+G
Sbjct: 596 VDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQ-SMLRLG 654
Query: 349 KQ 350
Q
Sbjct: 655 LQ 656
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 2/177 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + +A G P +N+++ A + S ++ A ++F+ M+ S+ PN TY+
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ-VSPNVFTYNIL 211
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I GF GN+D + G NV TY +LI G K R D + M G+
Sbjct: 212 IRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGL 271
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P++ V+ GLC ++ V L + G+ ++E L+K YC+ G +
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ 328
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 5/247 (2%)
Query: 108 LDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165
LDE Y LI K N A+ + M G+ P + SLI + +G++ A+
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+ M PN +TY + GFS G ++ + GFS +V TY +LI+G
Sbjct: 368 LDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
+ E+M G+ P + VL G C +D + ++ G K +
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345
L++ +CE R E + E + + P+ ++ +I Y + L+
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT--YTALINAYCMEGDLEKALQLHN 544
Query: 346 RMGKQGL 352
M ++G+
Sbjct: 545 EMVEKGV 551
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 7/269 (2%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHV 130
F+++ LI + L L DKM KG + Y LI K++ + +
Sbjct: 206 FTYNILIRGFCFAGNIDVALTL---FDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
SM +G++P+ +N +I LC + +S ++ Y + TY+ I G+
Sbjct: 263 LRSMALKGLEPNLISYNVVING-LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYC 321
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
GN +A + G + +V TY SLIH KA + + F ++M G+ P+
Sbjct: 322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER 381
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++G + ++ L+ + G+ + L+ +C G++++ LE +
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM 441
Query: 311 TKCNQSPEVLLH--FFSGIIRLYALSDRL 337
+ SP+V+ + SG R Y + + L
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 18/322 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K N+ AM M +G+ P+ + +L+ G + A + M
Sbjct: 348 YTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM- 406
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ TY+A I+G G ++ G S +V +Y +++ G ++ D
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDV 466
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D R EM+ GI P +++G C +R+ + +L G +E L
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSG-------------IIRLYALSD 335
+ YC G +++ + + + P+V+ + +G +++L+
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586
Query: 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYD 395
DV Y + FKS + C D+ +F + ++K Y+
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ--VFESMLGKNHKPDGTAYN 644
Query: 396 FLVAGYRRAGLSGKLDSVINEM 417
++ G+ RAG K ++ EM
Sbjct: 645 IMIHGHCRAGDIRKAYTLYKEM 666
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 35/259 (13%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F+ S +++ALI + + A VLE D KG + Y+ +++ + +V
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLE---DMKEKGLSPDVVSYSTVLSGFCRSYDV 466
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A+ V M +GIKPD+ ++SLI A L+E M+ P+ TY A
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEFTYTA 525
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR-----FYEE 239
I+ + G+++ + + + G +V TY LI+G K R FYEE
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+PS ++E C+ + V S L+K +C G
Sbjct: 586 S-----VPSDVTYHTLIEN-CSNIEFKSVVS-------------------LIKGFCMKGM 620
Query: 300 VDELEEQLETLTKCNQSPE 318
+ E ++ E++ N P+
Sbjct: 621 MTEADQVFESMLGKNHKPD 639
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M G+ PD + +LI A GD+ AL L MV + P+ TY I
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE-KGVLPDVVTYSVLI 562
Query: 187 SGFSSLGNVDAMNK-----WYAANIAAGFS----------VNVQTYESLIHGSLKARDFD 231
+G + + +Y ++ + + + ++ SLI G
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
D+ +E M+ P ++ G C + + + K ++ G+ ++ LV
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682
Query: 292 KCYCELGRVDEL 303
K + G+V+EL
Sbjct: 683 KALHKEGKVNEL 694
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
+V + +E+ P+ VF LI A G V AL ++ M + P + + + G
Sbjct: 114 NVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKM----DVLPAMQACNMVLDG 167
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
G D M K Y +A G S NV TY +LI G + DF R ++EM+ I P+
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++ GLC ++ +S + + G N ++ YC++ V + E +
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQ 287
Query: 309 TLTKCNQSPEVL 320
+ P V+
Sbjct: 288 EMLGDGLLPNVV 299
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 112/298 (37%), Gaps = 73/298 (24%)
Query: 112 ACLIALSGKVQNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
AC + L G V+ F V+ M A+G P+ + +LI C GD + A LF+ M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219
Query: 170 VSSEEYK----------------------------------PNSKTYDAFISGFSSLGNV 195
+ + + PN TY+ + G+ + +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---- 251
+ Y + G NV T+ LI G K + S +F +M S G++P+I +
Sbjct: 280 KKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCL 339
Query: 252 -------------------LEK------------VLEGLCARRKLDRVKSFLKFLLGGGW 280
+EK +++GLC +++ L+ + G+
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGF 399
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338
N L+ YC+ G +++ E +T+ P ++ FS +I Y + +++
Sbjct: 400 LPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIIT--FSTLIDGYCKAGKME 455
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI V + A + M+ +G P++ +N+LI G++ A+ + M
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQM- 429
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + +PN T+ I G+ G ++A Y + G +V Y +LI G K +
Sbjct: 430 TEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNT 489
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL-DRVKSFL 272
R ++EM G+ P++ L +++GLC ++ D +K FL
Sbjct: 490 KEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532
>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Glycine max]
Length = 622
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 1/210 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ +++ V A+ + M +GI P++ V+N +I A +G AL + E
Sbjct: 314 YGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLE-RF 372
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E P TY++ + GF G++ +K I+ GF + TY + R
Sbjct: 373 HVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKI 432
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y +++ G P +++ LC KLD K + G+ ++ + L
Sbjct: 433 EEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTML 492
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVL 320
V C++ R++E + E + + P+ L
Sbjct: 493 VHLLCKVRRLEEAFVEFEDMIRRGIVPQYL 522
>gi|218191150|gb|EEC73577.1| hypothetical protein OsI_08035 [Oryza sativa Indica Group]
Length = 683
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 5/232 (2%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ + KV N+ A F ++ +G PD +F S+I A L SG+ A +L M S
Sbjct: 386 TLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLREMERS 445
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KP + + I F+ G +D + + + AGF + + Y SLI +
Sbjct: 446 --IKPTKELFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQ 503
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+E+M S G P + ++ + +LD SFL L G K L+
Sbjct: 504 AYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDHALSFLLKLEKDGLKPGVKTNLVLLD 563
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
L V E E+ ++ + K + P + +H F + +YA S + + S+
Sbjct: 564 WLSRLQLVQEAEQVVQKIRKAGEEP-LEMHVF--LADMYAKSQQEERTRKSL 612
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 131/327 (40%), Gaps = 54/327 (16%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHV 130
W AL+ L++ + +L L ++ ++L +ES + +Y+ LI L K +V A +
Sbjct: 314 WMALLERLKA---RNVELYL--KVAEILLADESFGATIRDYSKLIDLHSKANHVEDAERI 368
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M+ GI PD VVT+++L + +
Sbjct: 369 LGKMKENGIAPD----------------VVTSITLVHM--------------------YC 392
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+GN++ N+ + GF +++ + S+I LK+ + + E M I P+
Sbjct: 393 KVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLRE-MERSIKPTKE 451
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ V+ R +D + +L G+++ + L++ Y G V + E +
Sbjct: 452 LFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQM 511
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P+ +G++ Y + ++LD + ++ K GL K +V+ +
Sbjct: 512 RSSGHEPDD--RCVAGMMVAYMMKNQLDHALSFLLKLEKDGL--KPGVKTNLVLLDWL-- 565
Query: 371 AAYDRLDLFLDHIKGSYKLRRATYDFL 397
RL L + + K+R+A + L
Sbjct: 566 ---SRLQLVQEAEQVVQKIRKAGEEPL 589
>gi|115447253|ref|NP_001047406.1| Os02g0611400 [Oryza sativa Japonica Group]
gi|47497186|dbj|BAD19233.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47497609|dbj|BAD19678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536937|dbj|BAF09320.1| Os02g0611400 [Oryza sativa Japonica Group]
gi|215715250|dbj|BAG95001.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623225|gb|EEE57357.1| hypothetical protein OsJ_07494 [Oryza sativa Japonica Group]
Length = 683
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 5/232 (2%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
L+ + KV N+ A F ++ +G PD +F S+I A L SG+ A +L M S
Sbjct: 386 TLVHMYCKVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLREMERS 445
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
KP + + I F+ G +D + + + AGF + + Y SLI +
Sbjct: 446 --IKPTKELFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQ 503
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
+E+M S G P + ++ + +LD SFL L G K L+
Sbjct: 504 AYTLFEQMRSSGHEPDDRCVAGMMVAYMMKNQLDHALSFLLKLEKDGLKPGVKTNLVLLD 563
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344
L V E E+ ++ + K + P + +H F + +YA S + + S+
Sbjct: 564 WLSRLQLVQEAEQVVQKIRKAGEEP-LEMHVF--LADMYAKSQQEERTRKSL 612
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 131/327 (40%), Gaps = 54/327 (16%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHV 130
W AL+ L++ + +L L ++ ++L +ES + +Y+ LI L K +V A +
Sbjct: 314 WMALLERLKA---RNVELYL--KVAEILLADESFGATIRDYSKLIDLHSKANHVEDAERI 368
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M+ GI PD VVT+++L + +
Sbjct: 369 LGKMKENGIAPD----------------VVTSITLVHM--------------------YC 392
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
+GN++ N+ + GF +++ + S+I LK+ + + E M I P+
Sbjct: 393 KVGNLEQANQAFQFLKGEGFPPDMKLFTSMIRAHLKSGEPKQAENLLRE-MERSIKPTKE 451
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ V+ R +D + +L G+++ + L++ Y G V + E +
Sbjct: 452 LFMDVILAFAQRGMIDGAERVKTSMLLAGFQLTPELYTSLIEAYGRGGHVGQAYTLFEQM 511
Query: 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
P+ +G++ Y + ++LD + ++ K GL K +V+ +
Sbjct: 512 RSSGHEPDD--RCVAGMMVAYMMKNQLDHALSFLLKLEKDGL--KPGVKTNLVLLDWL-- 565
Query: 371 AAYDRLDLFLDHIKGSYKLRRATYDFL 397
RL L + + K+R+A + L
Sbjct: 566 ---SRLQLVQEAEQVVQKIRKAGEEPL 589
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +IAL K +N P A+ ++ M+ G +PD ++ ++ G + A ++F M
Sbjct: 531 YNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEM- 589
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + P+ Y + + +GNV+ +WY A + AG NV T SL+ L+
Sbjct: 590 KRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRL 649
Query: 231 DSVDRFYEEMMSLGIIPSI 249
+ M+ LG+ PS+
Sbjct: 650 SDAYNLLQSMLRLGLQPSL 668
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 4/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI G+ + A+ VF M+ G +PD + +LI +G + AL +++ M
Sbjct: 426 YNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQ 485
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P++ TY I+ G++ + +K + + G N+ TY +I KAR++
Sbjct: 486 EAH-LSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNY 544
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ Y +M + G P V+E L L+ ++ + W +E + L
Sbjct: 545 PTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLL 604
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLL--HFFSGIIRLYALSDRLDDVEYSVGRMG 348
V + ++G V++ E + + P V S +R++ LSD + ++ S+ R+G
Sbjct: 605 VDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQ-SMLRLG 663
Query: 349 KQ 350
Q
Sbjct: 664 LQ 665
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 113/293 (38%), Gaps = 5/293 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M A G PD FN+LI LC V F E PN +Y I
Sbjct: 328 AMVILKQMFASGCDPDIITFNTLITG-LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLI 386
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G + A + + G + +V T+ +LIHG + A E+M +
Sbjct: 387 HGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVF 446
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + I ++ GLC + L K+ L+ +L + +E + L+ + + + +
Sbjct: 447 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 506
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E + P+++ + +I+ Y + + + M K G VI
Sbjct: 507 FEFMEHKGVRPDIV--SCNAMIKGYCQFGMMSEAILCMSNMRKVG-CIPDEFTYTTVISG 563
Query: 367 YFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
Y + + L D IK K TY L+ GY + G + + + M+
Sbjct: 564 YAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQ 616
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 4/188 (2%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ +LE L+K ++ +E YA LI + +N+ A +F ME +G++PD N+
Sbjct: 468 AKNILEEMLEKNVQPDEFV---YATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNA 524
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I C +++ L + P+ TY ISG++ GN++ +W I
Sbjct: 525 MIKG-YCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR 583
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
NV TY SLI+G K D DS + + M + + P++ ++ L + K+ R
Sbjct: 584 KCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRA 643
Query: 269 KSFLKFLL 276
+ + +L
Sbjct: 644 GLYFETML 651
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 10/228 (4%)
Query: 98 DKMLKGNESCLDEYA-CLIA----LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
D+ML G +S D Y+ C++ L G+V+ + + + G P +N LI
Sbjct: 193 DEML-GEDSGADNYSTCVLVRGLCLEGRVEE---GLKLIEARWGAGCIPHVVFYNVLIDG 248
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
GD+ L L M ++ + P TY + I+ G+++ + + G S
Sbjct: 249 YCRRGDMGRGLLLLGEM-EAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSP 307
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
NVQ Y S+I K ++M + G P I ++ GLC + + + FL
Sbjct: 308 NVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFL 367
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ + N+ L+ +C G + + L + +P+V+
Sbjct: 368 REAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVV 415
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 105/296 (35%), Gaps = 47/296 (15%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DI FN+ LIT L +KA+ L + + L N+ + G++
Sbjct: 343 DIITFNT-------LITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGEL 395
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
A + M +G PD F +LI + +G V AL + E M + + P+
Sbjct: 396 MA---ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVF-PDVNI 451
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ ISG + A + + Y +LI G +++ + + +E M
Sbjct: 452 YNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 511
Query: 242 SLGIIPSIPILEKVLEGLCA-------------RRKLDRVK---SFLKFLLGGGWKINEN 285
G+ P I +++G C RK+ + ++ + G + N N
Sbjct: 512 HKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLN 571
Query: 286 MAQK-------------------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
A + L+ YC+ G D E + SP V+ +
Sbjct: 572 GALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTY 627
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K GN + Y +I + NV M + PD FN+LI +
Sbjct: 495 LDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIK 554
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
++ A ++F IM E +P++ TY+ I+GFS GN+ + + +G +
Sbjct: 555 EENMHGAFNVFNIM-EKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRY 613
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
TY SLI+G + A + + ++EM+ G P
Sbjct: 614 TYMSLINGHVTAGNSKQAFQLHDEMIHRGFAP 645
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 11/298 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V + ME + + PD N LI A +GDV A++L + M ++ KP TY++ + G
Sbjct: 179 VISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM-ANRGLKPGIVTYNSVLKGL 237
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
D + + + +V+++ LI G + + +FY+EM + P +
Sbjct: 238 CKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDV 297
Query: 250 PILEKVLEGLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ L GL +RR ++D ++L+ + G G + + ++ +C G + E +
Sbjct: 298 -VSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRD 356
Query: 309 TLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ P+V+ + +G+ + + RL D E + M ++G++ +I
Sbjct: 357 EMVGFGCLPDVVTYNTLLNGLCKQH----RLLDAEKLLNEMEERGVT-PDLCTFTTLIHG 411
Query: 367 YFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423
Y R ++ L LF ++ + TY+ L+ G R G K + + ++M E +
Sbjct: 412 YCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL 469
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 121/292 (41%), Gaps = 5/292 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ V M G PD +N+L+ ++ A L M P+ T+ I
Sbjct: 351 ALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEM-EERGVTPDLCTFTTLI 409
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+ GN + + + + +V TY SLI G + D + +++M + I+
Sbjct: 410 HGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREIL 469
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++ C + +++ FL ++ G N ++K YC G V + ++
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQF 529
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
L+ + + N P+++ F+ +I Y + + ++V + ++ + A M+I
Sbjct: 530 LQKMRQDNVFPDLIT--FNTLIHGYIKEENMHGA-FNVFNIMEKEMVRPDAVTYNMIING 586
Query: 367 YFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
+ D +F + R TY L+ G+ AG S + + +EM
Sbjct: 587 FSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEM 638
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 3/221 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
+ LI + +V A+ + SM +G+KP +NS++ A +F M
Sbjct: 195 HNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMD 254
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
P+ ++++ I GF +G V K+Y + +V ++ LI + +
Sbjct: 255 QCS-VAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEM 313
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + EM LG++P I V+ G C + ++G G + L
Sbjct: 314 DHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTL 373
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331
+ C+ R+ + E+ L + + +P+ L F+ +I Y
Sbjct: 374 LNGLCKQHRLLDAEKLLNEMEERGVTPD--LCTFTTLIHGY 412
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 1/190 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ +S+ A P VF+ LI S A F +++ P S + +A ++
Sbjct: 74 IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASAS-NALLAVL 132
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G + Y +++ VN T ++H K +FD D EM + P +
Sbjct: 133 SRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDV 192
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++ +D + + + G K ++K C+ R D+ +E T
Sbjct: 193 VTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRT 252
Query: 310 LTKCNQSPEV 319
+ +C+ +P+V
Sbjct: 253 MDQCSVAPDV 262
>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61400-like [Glycine max]
Length = 498
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
AM + M+ + +S FN +I C GD+ A+ + M + E +PN T+ I
Sbjct: 224 AMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQM-TEEXIEPNVITFSILI 282
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF + GNV A Y + G +V TY +LI G K + R ++EM+ G+
Sbjct: 283 DGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLS 342
Query: 247 PSIPILEKVLEGLCAR-RKLDRVKSFLK 273
P++ + V++GL R D +K FL+
Sbjct: 343 PNMFTVSCVIDGLLKDGRTNDAIKMFLE 370
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ ++ A+ V + M + I+P+ F+ LI G+V A+ L+ MV + P+
Sbjct: 252 KIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMV-IKGIVPDV 310
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYE 238
TY A I G +GN + + + AG S N+ T +I G LK R D++ F E
Sbjct: 311 VTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLE 370
Query: 239 ---------EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+M S P+ + +++GLC + + F + G+K
Sbjct: 371 KTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFK 422
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A VF M +GI+P+ ++ G + A +F M S PN TY +
Sbjct: 58 AQKVFDEMLERGIEPNVVIY----------GQMGEAEGVFGRMRESGVVTPNLYTYKTLM 107
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G+S +G+V + Y + G +V T+ +LI K D + + M ++
Sbjct: 108 DGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVV 167
Query: 247 PSIPILEKVLEGLC 260
P+ ++ G C
Sbjct: 168 PNGHAYNSLIHGYC 181
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 2/192 (1%)
Query: 130 VFTSMEAQGI-KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188
VF M G+ P+ + +L+ GDV L+ M+ Y P+ T+ I
Sbjct: 86 VFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLY-PDVVTFATLIDV 144
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+G++ A +A N Y SLIHG KA D EM GI
Sbjct: 145 LRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSD 204
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ +++GLC +L+ ++ + N ++ C++G +++ E
Sbjct: 205 VVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCS 264
Query: 309 TLTKCNQSPEVL 320
+T+ P V+
Sbjct: 265 QMTEEXIEPNVI 276
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 11/145 (7%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM ++T M +GI PD + +LI G+ A L + M+ + PN T
Sbjct: 290 NVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDA-GLSPNMFTV 348
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGF----------SVNVQTYESLIHGSLKARDFDS 232
I G G + K + AG+ S N Y LI G +
Sbjct: 349 SCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFK 408
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLE 257
+F+ EM G P + + +L+
Sbjct: 409 ATKFFAEMKWNGFKPDMLVYVTMLQ 433
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175
++ G V+ V +++ M G+ PD F +LI GD+ A + F M + +
Sbjct: 111 SMMGDVKRV---FYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYM-AKFDV 166
Query: 176 KPNSKTYDAFISGFSSLGN-VDAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSV 233
PN Y++ I G+ G+ ++AM W + G +V TY LI G +
Sbjct: 167 VPNGHAYNSLIHGYCKAGDLLEAM--WLRLEMERCGIFSDVVTYNILIKGLCDICRLEEA 224
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
E+M + + + V++G C +++
Sbjct: 225 MGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEK 258
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF---- 166
Y LI KV N A + M G+ P+ + +I L G A+ +F
Sbjct: 313 YTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKT 372
Query: 167 -----EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+ S PNS Y I G G + K++A GF ++ Y +++
Sbjct: 373 GAGYPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTML 432
Query: 222 HGSLKARDFDSVDRFYEEMMSLGII 246
+++ V + +M+ +G+I
Sbjct: 433 QAHFQSKHMIDVMMLHADMVKMGVI 457
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 5/224 (2%)
Query: 81 LQSSSPKKAQLVLEWRL-DKMLKGNESCLDEYACLIALSG--KVQNVPFAMHVFTSMEAQ 137
L SS K +L +R+ D M +G +D Y A++ K + A+ +F M
Sbjct: 212 LMSSLVKSNELHKSFRVFDAMCRGG-VLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEG 270
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+ P+ +N+LI SG + AL +F+ + + P+ TY ++G D
Sbjct: 271 GVLPNVVTYNNLIDGLCKSGRLEEAL-MFKGRMVENKVNPSLVTYGILVNGLVKFEKFDE 329
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
N + GFS N + +LI G + + D R ++M G+ P+ +L+
Sbjct: 330 ANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQ 389
Query: 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
G C ++++ + L++LL +NE+ ++ C+ + D
Sbjct: 390 GFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFD 433
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/372 (18%), Positives = 144/372 (38%), Gaps = 42/372 (11%)
Query: 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
+++ ++A+ VLE+ L +L NE L+ S K + A+ + ++ + IK
Sbjct: 393 RTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDS---ALKIVKALLLRNIKV 449
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN------- 194
+ ++ L+C G + A+ L+ + + N+ T +A + G GN
Sbjct: 450 NDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPV 509
Query: 195 ----------------------------VDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
++ K + GF + TY L+ G
Sbjct: 510 CKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLAD 569
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
D V R E G++P+I +LEG C ++D S L+ +++ +
Sbjct: 570 KGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVV 629
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
L+ + + G E + + + N P + +S II +D +++ +
Sbjct: 630 YNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFT--YSSIIHGMCCNDLVEEAKGIFEE 687
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAG 405
M +GL + +I Y + D+++ L + + + + TY ++ GY + G
Sbjct: 688 MRNEGL-MPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMG 746
Query: 406 LSGKLDSVINEM 417
+ + ++NEM
Sbjct: 747 NTKEATKLLNEM 758
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 6/209 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFEIMVSSE 173
+A GK+ +V +H + G+ P+ + +L+ C+ D + A+SLF +V ++
Sbjct: 567 LADKGKMDDVGRVLH---EAKDHGVVPNIYTY-ALMLEGYCNADRIDNAVSLFNKLVYNK 622
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ + Y+ I+ S GN K A ++ + TY S+IHG +
Sbjct: 623 -VELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEA 681
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
+EEM + G++P++ ++ G C ++D+++S L+ + + N+ ++
Sbjct: 682 KGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDG 741
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLH 322
YC++G E + L + SP+ + +
Sbjct: 742 YCKMGNTKEATKLLNEMIANGISPDTVTY 770
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA K N A + +M + I P ++S+I C+ V A +FE M
Sbjct: 630 YNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEM- 688
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+E PN Y A I G+ LG +D + + N TY +I G K +
Sbjct: 689 RNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNT 748
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ EM++ GI P + +G C +L+
Sbjct: 749 KEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEET 786
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 4/198 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
YA ++ + A+ +F + ++ V+N LI A +G+ A L + M
Sbjct: 595 YALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMR 654
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS + P TY + I G V+ + G NV Y +LI G K
Sbjct: 655 SSNIH-PTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQM 713
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D ++ +EM S I P+ +++G C L ++ G + L
Sbjct: 714 DQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVL 773
Query: 291 VKCYCELGRVDELEEQLE 308
K YC + +ELEE L+
Sbjct: 774 QKGYC---KENELEETLQ 788
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 119/321 (37%), Gaps = 36/321 (11%)
Query: 54 QIKTTLDSVDIFAFNSSQFSWDALITS--------LQSSSPKKAQLVL----EWRLDKML 101
+KTTLD F+F S F + + S L S+ +A+ L E + L
Sbjct: 90 NLKTTLD---FFSFASKNFKFRFTVRSYCILIRLLLASNHIPRAKFTLKRLIEGNANTPL 146
Query: 102 KGNESCLDEYAC----------------LIALSGKVQNVPF--AMHVFTSMEAQGIKPDS 143
K ++ L E A + L + Q++ F A F ++G+ P
Sbjct: 147 KKTDARLSEIASAFLELGERSHGELDLLIYILCSQFQHLGFHWAFDTFMLFTSKGVFPSL 206
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
N L+ + + S ++ + +F+ M + TY I+ + G +D +
Sbjct: 207 KSCNFLMSSLVKSNELHKSFRVFDAMCRGGVL-IDVYTYATAINAYCKGGKIDEAVGLFL 265
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
G NV TY +LI G K+ + F M+ + PS+ ++ GL
Sbjct: 266 KMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFE 325
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH- 322
K D S L + G+ NE + L+ Y G +D+ + +T P + H
Sbjct: 326 KFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHN 385
Query: 323 -FFSGIIRLYALSDRLDDVEY 342
G R + +EY
Sbjct: 386 TLLQGFCRTNQMEQAEQVLEY 406
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,066,313,934
Number of Sequences: 23463169
Number of extensions: 234722949
Number of successful extensions: 644902
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3892
Number of HSP's successfully gapped in prelim test: 2413
Number of HSP's that attempted gapping in prelim test: 587979
Number of HSP's gapped (non-prelim): 32644
length of query: 423
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 278
effective length of database: 8,957,035,862
effective search space: 2490055969636
effective search space used: 2490055969636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)