BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014502
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 3/243 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K ++ A F M ++ I PD + ++I GD+V A LF M
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ +P+S T+ I+G+ G++ + + I AG S NV TY +LI G K D
Sbjct: 414 C-KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
DS + EM +G+ P+I ++ GLC ++ + G + L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ YC+ G +D+ +E L+ + P ++ F+ ++ + L L+D E + M +
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 351 GLS 353
G++
Sbjct: 591 GIA 593
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 118/286 (41%), Gaps = 7/286 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+KP+S ++ S+I LC + A F M+ + P++ Y I GF
Sbjct: 307 MKRKGLKPNSYIYGSII-GLLCRICKLAEAEEAFSEMIR-QGILPDTVVYTTLIDGFCKR 364
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
G++ A +K++ + + +V TY ++I G + D + + EM G+ P
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+++ G C + ++ G N L+ C+ G +D E L + K
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372
P + ++ I+ S +++ VG GL+ + ++ +Y +
Sbjct: 485 IGLQPNIFT--YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT-YTTLMDAYCKSGE 541
Query: 373 YDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
D+ L + G + T++ L+ G+ G+ + ++N M
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 1/212 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I ++ + A H+ ME +G PD +++++ G++ L E+M
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM- 307
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ KPNS Y + I + + + ++ I G + Y +LI G K D
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ +F+ EM S I P + ++ G C + + G + + +L
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ YC+ G + + + + SP V+ +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K N+ A+ + EA G+ D+ + +L+ A SG++ A + + M+ + +P
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-KGLQPTI 561
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++ ++GF G ++ K +A G + N T+ SL+ + + Y++
Sbjct: 562 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 621
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M S G+ P E +++G C R + + + G G+ ++ + L+K + + +
Sbjct: 622 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681
Query: 300 VDELEEQLETLTK 312
E E + + +
Sbjct: 682 FLEAREVFDQMRR 694
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 5/189 (2%)
Query: 66 AFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
N+ ++ L+ + +S KAQ +L+ L K L+ + L G +++
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED- 579
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
+ M A+GI P++ FNSL+ ++ A ++++ M S P+ KTY+
Sbjct: 580 --GEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS-RGVGPDGKTYEN 636
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
+ G N+ + GFSV+V TY LI G LK + F +++M G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 245 IIPSIPILE 253
+ I +
Sbjct: 697 LAADKEIFD 705
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 1/159 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L LS A+ VF G+ + A +N +I G + A L +++ +
Sbjct: 217 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELK 275
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
Y P+ +Y ++G+ G +D + K G N Y S+I +
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
+ + EM+ GI+P + +++G C R + F
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 8/243 (3%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N +Y+ I LG + + G++ +V +Y ++++G + + D V +
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
E M G+ P+ I ++ LC KL + ++ G + + L+ +C+
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
G + + + + +P+VL ++ II + + + M +GL S
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDH---IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
E+ I Y C A D F H I+ TY L+ G + G + ++
Sbjct: 423 TFTEL-INGY--CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479
Query: 415 NEM 417
+EM
Sbjct: 480 HEM 482
>sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780
OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1
Length = 452
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 148/336 (44%), Gaps = 11/336 (3%)
Query: 92 VLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
VLEWR + + C+ +EYA I ++G+ +++ A+++F + ++ S V+N
Sbjct: 88 VLEWRRGQ----KDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTAS-VYN 142
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ + +G SLF+ P TY+ +S + L V M +
Sbjct: 143 SLMSVYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQK 202
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
N TY LI G + A ++D ++ ++EM + P + +L G L+R
Sbjct: 203 VKLPPNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNR 262
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
++ + + + + + ++ YC+ V++ +++E L E L +
Sbjct: 263 MEEMYEVIKDQVGVNSGPLVRAMICAYCKKA-VEDRVQKIENLLSLLSGEEYLPWLNVLL 321
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS- 386
IRLYA D ++ +E + +Q + + +I +YFRC D L F+ + +
Sbjct: 322 IRLYAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAG 381
Query: 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
+KL R+ Y + Y +++ V+NEM Y
Sbjct: 382 WKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNY 417
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 46/343 (13%)
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
I F F DA++T ++P+ A LVL L+ M E L Y + + K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ + +F M +GIKPD+A F ++I +G A+ FE M SS +P++ T
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
A I + GNVD Y + ++ T+ +LI + ++D YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
G+ P++ I ++++ + ++ + K K L+ G+ N + LV+ Y
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369
Query: 295 -------------------------CELGR-VDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
C R VDE E + + C P+ FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
I +YA S R+ + E ++ +M + G E V+ S +C
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 31/285 (10%)
Query: 82 QSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
Q+ PK+A +EW +KM G E A +I G+ NV A+ ++ + +
Sbjct: 222 QNGVPKRA---VEW-FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWR 277
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
D+ F++LI SG+ L+++E M + KPN Y+ I S+G A
Sbjct: 278 IDAVTFSTLIRIYGVSGNYDGCLNIYEEM-KALGVKPNLVIYNRLID---SMGR--AKRP 331
Query: 201 W-----YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
W Y I GF+ N TY +L+ +AR D Y EM G+ ++ IL
Sbjct: 332 WQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTV-ILYNT 390
Query: 256 LEGLCA-RRKLDRVKSFLKFLLG------GGWKINENMAQKLVKCYCELGRVDELEEQLE 308
L +CA R +D + + W + L+ Y GRV E E L
Sbjct: 391 LLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFS-----SLITVYACSGRVSEAEAALL 445
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + P L + +I+ Y + ++DDV + ++ + G++
Sbjct: 446 QMREAGFEP--TLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGIT 488
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 4/175 (2%)
Query: 74 WDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI S+ ++ P +A+++ + D + G YA L+ G+ + A+ ++
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYK---DLITNGFTPNWSTYAALVRAYGRARYGDDALAIYR 374
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M+ +G+ ++N+L+ C + V A +F+ M + E P+S T+ + I+ ++
Sbjct: 375 EMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACS 434
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V AGF + S+I KA+ D V R +++++ LGI P
Sbjct: 435 GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITP 489
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 2/250 (0%)
Query: 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
++ALI L K E + + KG + Y+ LI + + A T
Sbjct: 249 YNALINGLCKEHDYKG--AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M +G P+ +SL+ C G AL L+ M+ +PN Y+ + GF S G
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
N+ ++ G S N++TY SLI+G K D + +M++ G P++ +
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
++E LC K +S ++ + + +K C+ GR+D E+ + +
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486
Query: 314 NQSPEVLLHF 323
++ P ++ +
Sbjct: 487 HRCPPNIVTY 496
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ M+ G +P+ +N L+ A LC + V + +S++ P++ +Y IS
Sbjct: 168 VYRDMKRDGFEPNVFTYNVLLKA-LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSM 226
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+G V +A F V Y +LI+G K D+ EM+ GI P++
Sbjct: 227 CEVGLVKE-----GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNV 281
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK-CYCELGRVDELE 304
++ LC +++ SFL +L G N LVK C+ D L+
Sbjct: 282 ISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALD 337
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 46/265 (17%)
Query: 57 TTLDSVDI-------FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD 109
TT D++D+ F + +++ L+ S + + ++++ G +
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI--GCSPNIR 388
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
Y LI K ++ A++++ M G P+ V+ +++ A A SL EIM
Sbjct: 389 TYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIM 448
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWY---------AANIAA------------ 208
S E P+ T++AFI G G +D K + NI
Sbjct: 449 -SKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKAN 507
Query: 209 ---------------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
G + TY +L+HGS A + +MM G P +
Sbjct: 508 RIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMN 567
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGG 278
++ C + K +R L + G
Sbjct: 568 MIILAYCKQGKAERAAQMLDLVSCG 592
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218
V AL F+ + +S +K T++ I + G VD++ GF + +
Sbjct: 56 VPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFI 115
Query: 219 SLI----HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
S+I L R +V+ FY + G PS+ I VL+ L ++ + +
Sbjct: 116 SVISVYRQVGLAER---AVEMFY-RIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRD 171
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
+ G++ N L+K C+ +VD ++ L ++ P+ +
Sbjct: 172 MKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAV 217
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 16/289 (5%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E L Y+ LI K + +F+ +G+K D VF+S I + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A +++ M+ + PN TY I G G + Y + G ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
G K + S YE+M+ +G P + I +++GL + + F +LG +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+N + L+ +C L R DE + + P+V F+ ++R+ + RL++
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEGRLEEAL 551
Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR 390
+ RM K GL E + C+ +D F H+K + L+
Sbjct: 552 FLFFRMFKMGL-----EPDALAYCTL--------IDAFCKHMKPTIGLQ 587
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 3/238 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K + + +L +++ N+ D C +I L K + A F ++ ++PD
Sbjct: 578 KHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIV 637
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
+N++IC + A +FE++ + PN+ T I ++D + ++
Sbjct: 638 TYNTMICGYCSLRRLDEAERIFELL-KVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSI 696
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
G N TY L+ K+ D + + +EEM GI PSI +++GLC R +
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+D + + + L++ YC++GR+ E E + + P+ LL
Sbjct: 757 VDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQ 814
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 53/146 (36%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN T+ I+GF G +D + G ++ Y +LI G KA +
Sbjct: 284 PNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKL 343
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+ + + G+ + + ++ L K +L G N L+K C+
Sbjct: 344 FSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQ 403
Query: 297 LGRVDELEEQLETLTKCNQSPEVLLH 322
GR+ E + K P ++ +
Sbjct: 404 DGRIYEAFGMYGQILKRGMEPSIVTY 429
>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000
OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1
Length = 481
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 161/342 (47%), Gaps = 17/342 (4%)
Query: 86 PKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
P +QLV +WR +K L G DEYA I +SG+++NV A+ +F + ++
Sbjct: 94 PVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLF----HESANKTTS 149
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEE----YKPNSKTYDAFISGFSSLGNVDAMNK 200
V+N+L+ A LC+G LF S ++ P+ TY+ IS + L V+ M
Sbjct: 150 VYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMES 209
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ + TY +LI G + A D+D ++ + M + + P++ +L G
Sbjct: 210 VFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYA 269
Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY---CELGRVDELEEQLETLTKCNQSP 317
L R++ + + + + + ++ Y C R+ +++ + + K + P
Sbjct: 270 NSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKP 329
Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
+ L ++++YA D L +E + + +GL ++ + ++ SYFRC A D+L
Sbjct: 330 WLYLL----LMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLA 385
Query: 378 LFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
F+ + +K+ R+ + L+ Y ++++V++EM+
Sbjct: 386 KFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEME 427
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY+ I
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF +D + + G N TY +LIHG +ARD D+ +++M+S G+
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + +++ C+ G+V++ +
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
+L+ P+V+++ SG R
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCR 552
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 124/302 (41%), Gaps = 23/302 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+++FT ME +G++P+ ++SLI +CLC+ + + S + + PN T++A I
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLI-SCLCNYERWSDASRLLSDMIERKINPNVVTFNALI 337
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + K Y I ++ TY SLI+G D +E M+S
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 397
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P++ ++ G C +++D + + G N L+ + + D +
Sbjct: 398 PNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 457
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVI 364
+ + P ++ + + L D G++ K + F+ + +E I
Sbjct: 458 FKQMVSDGVHPNIMTY------------NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505
Query: 365 CSY-----FRCAA---YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416
+Y C A D DLF K Y+ +++G+ R GL + D++ +
Sbjct: 506 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRK 565
Query: 417 MK 418
M+
Sbjct: 566 MR 567
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ + +++++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + ++ + I + NV
Sbjct: 273 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ Y+EM+ I P I ++ G C +LD K + +
Sbjct: 332 TFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ R+DE E +++
Sbjct: 392 ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 7/284 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 84 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 199
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I V++ LC R D + + G + N L+ C C R + L
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + +P V+ F+ +I + +L + E M K+ +
Sbjct: 320 DMIERKINPNVVT--FNALIDAFVKEGKLVEAEKLYDEMIKRSI 361
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ P+ +N+L+ +G + A+ +FE +
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 497
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + +P TY+ I G G V+ + + G +V Y ++I G +
Sbjct: 498 RS-KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + +M G +P
Sbjct: 557 EEADALFRKMREDGPLP 573
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 2/212 (0%)
Query: 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269
FS Y ++ L + D + M+ +PSI K+L + +K D V
Sbjct: 46 FSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVI 105
Query: 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
S + + G N L+ C+C ++ L + K P ++ S ++
Sbjct: 106 SLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT--LSSLLN 163
Query: 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL 389
Y R+ D V +M + G + ++ + A + + L ++ +
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
TY +V G + G +++N+M+ A+
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 40/272 (14%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L+KM KG E+ + Y +I K +++ A +F ME +GIKPD +N LI +CLC
Sbjct: 238 LNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI-SCLC 296
Query: 156 S------------------------------------GDVVTALSLFEIMVSSEEYKPNS 179
+ G +V A L++ MV S+ P+
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
Y+ I GF V+ + + G N TY +LIHG +ARD D+ +++
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 416
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G+ P I +L+GLC ++ +++ K++ +++ C+ G+
Sbjct: 417 MVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGK 476
Query: 300 VDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
V++ + +L+ P V+ + SG R
Sbjct: 477 VEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + ++ A VF M + G+ PD +N L+ +G+V TAL +FE M
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM- 452
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ K + TY I G V+ + + G NV TY +++ G +
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 512
Query: 231 DSVDRFYEEMMSLGIIPS 248
+ D + EM G +P+
Sbjct: 513 EEADALFVEMKEDGPLPN 530
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV A+ VF M+ + +K D + ++I A +G V LF +S + KPN TY
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF-CSLSLKGVKPNVVTY 499
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+SGF G + + + G N TY +LI L+ D + +EM S
Sbjct: 500 TTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRS 559
Query: 243 LG 244
G
Sbjct: 560 CG 561
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/335 (17%), Positives = 123/335 (36%), Gaps = 56/335 (16%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
++++ +I+L ++QN+ + +++T ++F + C + AL++
Sbjct: 88 MNKFDLVISLGEQMQNLGISHNLYTY----------SIFINYFCR---RSQLSLALAILG 134
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 135 KMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG--------- 278
E M+ G P + V+ GLC R + D + L + G
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253
Query: 279 --------------------------GWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
G K + L+ C C GR + L + +
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI---CSYFR 369
N +P+++ FF+ +I + +L + E M K F +I C Y R
Sbjct: 314 KNINPDLV--FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371
Query: 370 CAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA 404
+ +++F + + TY L+ G+ +A
Sbjct: 372 VE--EGMEVFREMSQRGLVGNTVTYTTLIHGFFQA 404
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 7/357 (1%)
Query: 65 FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
N + +++ LI + P+++ +L+ L++ + + L+ K +
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
V A V ME G++PD+ +N++ + G+ V A S + E MV E+ KPN +T
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ G+ G V ++ N+ + SLI+G ++ D D +D M
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ + V+ + +++ K ++ G K + + L K Y +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKK 383
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
EE LETL P V++ F+ +I + + +DD +M K G+S + + E
Sbjct: 384 AEELLETLI-VESRPNVVI--FTTVISGWCSNGSMDDAMRVFNKMCKFGVS-PNIKTFET 439
Query: 363 VICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
++ Y + + L ++G K +T+ L +R AGL+ + + IN +K
Sbjct: 440 LMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%)
Query: 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140
++ P +AQ V + + G+ L Y L+A + + + +E G K
Sbjct: 56 IERGRPHEAQTVFKTLAET---GHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTK 112
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
DS FN++I A SG++ A+ + + P + TY+ I G+ G + ++
Sbjct: 113 LDSIFFNAVINAFSESGNMEDAVQAL-LKMKELGLNPTTSTYNTLIKGYGIAGKPERSSE 171
Query: 201 WYAANIAAG---FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G N++T+ L+ K + + ++M G+ P +
Sbjct: 172 LLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIAT 231
Query: 258 GLCARRKLDRVKSFL--KFLLGGGWKINENMAQKLVKCYCELGRV 300
+ + R +S + K ++ K N +V YC GRV
Sbjct: 232 CYVQKGETVRAESEVVEKMVMKEKAKPNGRTCGIVVGGYCREGRV 276
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)
Query: 79 TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
T LQ + K A + + LD M++ N D Y C A GKV AM VF+
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYAKQGKVDQ---AMLVFSK 396
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M QG+ P++ + ++I SG V A+ FE M+ E P + Y++ I G +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 454
Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
NKW A + G +N + S+I K ++ +E M+ +G+ P
Sbjct: 455 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
++ ++ G C K+D L ++ G K N L+ YC++ R+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 308 ETLTKCNQSPEVLLH 322
+ + SP+++ +
Sbjct: 570 KEMESSGVSPDIITY 584
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CAC-------------- 153
Y +I + K V AM F M +G+ P + V+NSLI C C
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 154 ---LC---------------SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
+C G V+ + LFE+MV KPN TY+ I+G+ G +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKM 527
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
D K + ++ G N TY +LI+G K + ++EM S G+ P I +
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
L+GL R+ K + G +I + ++ C+ D+ + + L
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 5/257 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFIS 187
V M G P+ +N L+ AL L +M P+ +Y I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
GF G+ D Y + G +V TY S+I KA+ D M+ G++P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
+L G C+ + FLK + G + + L+ C+ GR E +
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367
+++TK PE+ + +++ YA L ++ + M + G+ ++IC+Y
Sbjct: 325 DSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGIH-PDHYVFSILICAY 381
Query: 368 FRCAAYDRLDLFLDHIK 384
+ D+ L ++
Sbjct: 382 AKQGKVDQAMLVFSKMR 398
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F M G+KP+ +N+LI +G + A+ L MVS KPN+ TY I+G+
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYSTLINGY 556
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ ++ + ++G S ++ TY ++ G + R + Y + G +
Sbjct: 557 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 616
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+L GLC + D + L K+ ++ ++GR DE ++
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 108/299 (36%), Gaps = 73/299 (24%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG------------- 157
Y +IA K Q + AM V +M G+ PD +NS++ SG
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 158 ------DVVT----------------ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
DVVT A +F+ M + KP TY + G+++ G +
Sbjct: 294 SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGAL 352
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS------- 248
M+ + G + + LI K D + +M G+ P+
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 249 IPILEK----------------------------VLEGLCARRKLDRVKSFLKFLLGGGW 280
I IL K ++ GLC K +R + + +L G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
+N ++ +C+ GRV E E+ E + + P V+ ++ +I Y L+ ++D+
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVIT--YNTLINGYCLAGKMDE 529
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 171 SSEEYKPNSKTYDAFIS----------GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220
++E P+ TY I GF++LGNV I GF V+ + L
Sbjct: 79 GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNV----------IKKGFRVDAIAFTPL 128
Query: 221 IHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL--- 276
+ G R D++D M LG IP++ +L+GLC + L +
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDR 188
Query: 277 GGG 279
GGG
Sbjct: 189 GGG 191
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K+ + A+ +F ME+ G+ PD +N ++ + A L+ + +
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY-VRI 607
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ + TY+ + G D + + + +T+ +I LK
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + S G++P+ + E + + L+ + + G ++ M +
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFI 727
Query: 291 VKCYCELGRV 300
V+ + G +
Sbjct: 728 VRELLQRGEI 737
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 42/389 (10%)
Query: 66 AFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125
+ F+++ LI L + + L R+ ++KG + L Y ++ K ++
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRM--VVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+ + ME I+P ++N++I A +V AL+LF M ++ +PN TY++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSL 297
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I + G ++ + I + NV T+ +LI +K ++ Y+EM+ I
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
P I ++ G C +LD K + ++ N L+K +C+ RVDE E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 306 QLETLTK-----CNQSPEVLLHFF--------SGIIRLYALSDRL--DDVEYSVGRMGKQ 350
+++ + L+H F + I+ +SD + D + YS+
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL---D 474
Query: 351 GLSFKSAEDVEMVICSYFR------------------CAA---YDRLDLFLDHIKGSYKL 389
GL + +V+ Y + C A D DLF K
Sbjct: 475 GLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 390 RRATYDFLVAGYRRAGLSGKLDSVINEMK 418
TY +++G+ R GL + D++ EMK
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMK 563
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 9/298 (3%)
Query: 60 DSVDIFA--FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK--GNESCLDEYACLI 115
D+V++F S F + L S+ K + L L + ++ G L Y+ LI
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEE 174
+ + A+ V M G +PD NSL+ C G+ ++ A+SL MV
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG-FCHGNRISDAVSLVGQMVEMG- 181
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
Y+P+S T++ I G + G ++ TY +++G K D D
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++M I P + I +++ LC + ++ + + G + N L++C
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
C GR + L + + +P V+ FS +I + +L + E M K+ +
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A VF M + G+ PD ++ L+ +G V TAL +FE +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQ 493
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +P+ TY+ I G G V+ + + G NV TY +++ G +
Sbjct: 494 RSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 231 DSVDRFYEEMMSLGIIP 247
+ D + EM G +P
Sbjct: 553 EEADALFREMKEEGPLP 569
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD ++SLI + A +FE+M+S + + PN TY I
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYSTLI 405
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 406 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 465
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL + ++L + + +++ C+ G+V++ E
Sbjct: 466 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
L+ SP V+ + SG R
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCR 550
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 4/228 (1%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I K +++ A+++FT M+ +GI+PD ++SLI +CLC
Sbjct: 246 LKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI-SCLC 304
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 305 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
+ G N L+ + + D + + + P +L +
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++N++I + AL+LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +P+ TY + IS + G ++ + I + NV T+ +LI +K
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQ 426
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI K + V M +F M +G+ ++ + +LI + D A +F+ MV
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + PN TY+ + G G + + + ++ TY +I G KA
Sbjct: 461 SVGVH-PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ + + G+ P++ ++ G C + + S LK + G N L
Sbjct: 520 EDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTL 579
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ G + E ++ + C
Sbjct: 580 IRARLRDGDREASAELIKEMRSC 602
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I L G +N + AM VF ++ ++PD +N +I +G V LF +S
Sbjct: 473 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF-CNLSL 531
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ PN Y+ ISGF G+ + + G N TY +LI L+ D ++
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 592 SAELIKEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 631
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 114/299 (38%), Gaps = 19/299 (6%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE------YKPNSK 180
A+ +F M P FN L+ A V ++ FE+++S E +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSA-------VAKMNKFELVISLGEQMQTLGISHDLY 119
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY FI+ F + A + G+ ++ T SL++G ++ ++M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ +G P ++ GL K + + ++ G + + +V C+ G +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360
D L+ + K +V++ ++ II +DD M +G+
Sbjct: 240 DLALSLLKKMEKGKIEADVVI--YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Query: 361 EMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ +C+Y R + R L D I+ T+ L+ + + G + + + +EM
Sbjct: 298 SLISCLCNYGRWSDASR--LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 6/298 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDA 184
A+ VF M G+ P+ FN +I +GD+ AL L M +S PN+ TY++
Sbjct: 237 ALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNS 296
Query: 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
I+GF G +D + + +G N +TY +L+ +A D R +EM S G
Sbjct: 297 VINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKG 356
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
++ + I ++ L ++ S L+ + +I+ +V+ C G V E
Sbjct: 357 LVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAV 416
Query: 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
E +++ +++ H + ++ + +L + +G M QGLS A +I
Sbjct: 417 EFQRQISEKKLVEDIVCH--NTLMHHFVRDKKLACADQILGSMLVQGLSL-DAISFGTLI 473
Query: 365 CSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
Y + +R L+++ IK + Y+ +V G + G++G ++V+N M+ +
Sbjct: 474 DGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAMEIKD 531
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 33/294 (11%)
Query: 36 SVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEW 95
S S +NPLISR+L+ S K L+ ++W L+S++ K++ E
Sbjct: 52 SSSLTNPLISRVLREFRSSPKLALEF----------YNW-----VLRSNTVAKSENRFEA 96
Query: 96 R--LDKMLKGN---ESCLDEYACLIALSG-KVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149
+ +L G+ + L A L+++ G K+ + + S +A G PD VF+SL
Sbjct: 97 SCVMIHLLVGSRRFDDALSIMANLMSVEGEKLSPLHVLSGLIRSYQACGSSPD--VFDSL 154
Query: 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209
+ AC +GD A + E +E + + + F+ ++ +D K Y + G
Sbjct: 155 VRACTQNGDAQGAYEVIE-QTRAEGFCVSVHALNNFMGCLLNVNEIDRFWKVYKEMDSLG 213
Query: 210 FSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
+ NV T+ +I+ K ++ F+++ FY M+ G+ P++ +++G C +
Sbjct: 214 YVENVNTFNLVIYSFCKESKLFEALSVFY-RMLKCGVWPNVVSFNMMIDGACKTGDMRFA 272
Query: 269 KSFL-KFLLGGGWKINENMA--QKLVKCYCELGRVDELE----EQLETLTKCNQ 315
L K + G ++ N ++ +C+ GR+D E + +++ CN+
Sbjct: 273 LQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNE 326
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + SM QG+ D+ F +LI L G + AL +++ M+ + N Y++ +
Sbjct: 450 ADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNK-TSNLVIYNSIV 508
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G S G A A + A ++ TY +L++ SLK + + D +M
Sbjct: 509 NGLSKRGMAGAAE----AVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGE 564
Query: 247 PSIPIL--EKVLEGLCARRKLDRVKSFLKFLLGGG 279
S+ ++ ++ LC ++ K LKF++ G
Sbjct: 565 KSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERG 599
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 77/183 (42%), Gaps = 3/183 (1%)
Query: 87 KKAQLVLEWRL-DKMLKGNESCLDE-YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
K +L L R+ M+K C + Y L+ G+ + A+ + M ++G+ ++
Sbjct: 303 KAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTV 362
Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
++NS++ GD+ A+S+ M +S+ + + T + G G V ++
Sbjct: 363 IYNSIVYWLFMEGDIEGAMSVLRDM-NSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQ 421
Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
++ + +L+H ++ + D+ M+ G+ +++G K
Sbjct: 422 ISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGK 481
Query: 265 LDR 267
L+R
Sbjct: 482 LER 484
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 14/337 (4%)
Query: 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132
++ LI SL S K L L +++ G + + Y LI A +
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M +G+ P+ +N+LI G + A+ + E+M S + PN++TY+ I G+
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNELIKGYCKS 441
Query: 193 GNVDAM---NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
AM NK + +V TY SLI G ++ +FDS R M G++P
Sbjct: 442 NVHKAMGVLNKMLERKVLP----DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++ LC ++++ L G N M L+ YC+ G+VDE LE
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369
+ N P L F+ +I +L + +M K GL + D ++I +
Sbjct: 558 MLSKNCLPNSLT--FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT-ILIHRLLK 614
Query: 370 CAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+D F + K TY + Y R G
Sbjct: 615 DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREG 651
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 60 DSVDIFAFNSSQ------FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
D+VD+ S+ +++ LI S+ KA VL L++ + + + Y
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPD---VVTYNS 467
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
LI + N A + + M +G+ PD + S+I + S V A LF+ + +
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL-EQK 526
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
PN Y A I G+ G VD + ++ N T+ +LIHG
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E+M+ +G+ P++ ++ L D S + +L G K + + ++
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332
YC GR+ + E+ + + + SP+ L +S +I+ Y
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPD--LFTYSSLIKGYG 683
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 3/231 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
NV AM V M + + PD +NSLI SG+ +A L +M + P+ TY
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM-NDRGLVPDQWTY 500
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
+ I V+ + + G + NV Y +LI G KA D E+M+S
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+P+ ++ GLCA KL + ++ G + + L+ + G D
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDH 620
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
+ + + P+ H ++ I+ Y RL D E + +M + G+S
Sbjct: 621 AYSRFQQMLSSGTKPDA--HTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
PN TY+ ++G+ LGNV+ N++ + + AG + TY SLI G + +D DS +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
+ EM G + ++ GLC R++D
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 5/217 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K+ NV A + + G+ PD + SLI D+ +A +F M + + N
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-PLKGCRRNE 288
Query: 180 KTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
Y I G +D AM+ + F V+TY LI + +
Sbjct: 289 VAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT-VRTYTVLIKSLCGSERKSEALNLVK 347
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM GI P+I +++ LC++ K ++ + L +L G N L+ YC+ G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335
+++ + +E + SP ++ +I+ Y S+
Sbjct: 408 MIEDAVDVVELMESRKLSPNT--RTYNELIKGYCKSN 442
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 107/270 (39%), Gaps = 24/270 (8%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
+ +++ALI L + K +LE ++ K+ G + + LI K + A
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEEKMVKI--GLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
F M + G KPD+ + + I G ++ A + M P+ TY + I G+
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM-RENGVSPDLFTYSSLIKGY 682
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR------------------DFD 231
LG + G + T+ SLI L+ + +FD
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFD 742
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV--KSFLKFLLGGGWKINENMAQK 289
+V E+M+ + P+ EK++ G+C L RV K F G +E +
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL-RVAEKVFDHMQRNEGISPSELVFNA 801
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEV 319
L+ C C+L + +E + ++ + P++
Sbjct: 802 LLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 98 DKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+KM+ +G E L Y+ L+ + + + A V M +G P+ V+N+LI + + +
Sbjct: 332 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 391
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A+ + ++MV S+ S TY+ I G+ G D + ++ GF+VN +
Sbjct: 392 GSLNKAIEIKDLMV-SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ S+I FDS RF EM+ + P +L ++ GLC K + L
Sbjct: 451 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 510
Query: 277 GGGWKINENMAQKLVKCYCELGRVDE 302
G+ ++ + L+ CE G++DE
Sbjct: 511 NKGFVVDTRTSNALLHGLCEAGKLDE 536
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Query: 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
+G+ PD +F + I A G V A+ LF M PN T++ I G G D
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM-EEAGVAPNVVTFNTVIDGLGMCGRYD 325
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256
+ + G + TY L+ G +A+ +EM G P++ + ++
Sbjct: 326 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 385
Query: 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+ L++ ++ G + + L+K YC+ G+ D E L+ +
Sbjct: 386 DSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 38/292 (13%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + + +G D +N+LI C + A + MV KP++ TY I
Sbjct: 537 AFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK-RGLKPDNYTYSILI 595
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G ++ V+ +++ G +V TY +I G KA + F++EMMS +
Sbjct: 596 CGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ 655
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ + ++ C +L + + G N L+K + RV+E +
Sbjct: 656 PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLL 715
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
E + P V ++ +I Y ++ VE + M
Sbjct: 716 FEEMRMEGLEPNVF--HYTALIDGYGKLGQMVKVECLLREM------------------- 754
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
H K + + TY ++ GY R G + ++NEM+
Sbjct: 755 ---------------HSKNVHP-NKITYTVMIGGYARDGNVTEASRLLNEMR 790
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ +I K + F M ++ ++P++ V+N LI A SG + AL L E M
Sbjct: 626 YSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM- 684
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PNS TY + I G S + V+ + G NV Y +LI G K
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 744
Query: 231 DSVDRFYEEMMSLGIIPS 248
V+ EM S + P+
Sbjct: 745 VKVECLLREMHSKNVHPN 762
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 13/259 (5%)
Query: 66 AFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + ++ LI S +++ S KA + + + K L S Y LI K
Sbjct: 373 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQA 429
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
A + M + G + F S+IC LCS + + F + P
Sbjct: 430 DNAERLLKEMLSIGFNVNQGSFTSVICL-LCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 488
Query: 185 FISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
ISG G + A+ W+ + GF V+ +T +L+HG +A D R +E++
Sbjct: 489 LISGLCKHGKHSKALELWFQF-LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGR 547
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G + ++ G C ++KLD FL ++ G K + L+ C L ++++
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI---CGLFNMNKV 604
Query: 304 EEQLETLTKCNQS---PEV 319
EE ++ C ++ P+V
Sbjct: 605 EEAIQFWDDCKRNGMLPDV 623
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
+ + LE R D KG Y LI + V A +F M +G++P+ +
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
+LI G +V L M S+ PN TY I G++ GNV ++
Sbjct: 733 ALIDGYGKLGQMVKVECLLREM-HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791
Query: 208 AGFSVNVQTYESLIHGSLK 226
G + TY+ I+G LK
Sbjct: 792 KGIVPDSITYKEFIYGYLK 810
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 2/227 (0%)
Query: 97 LDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M+K G + Y+ LI + V A+ + + G+ PD ++ +I C
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
+ F+ M+S + +PN+ Y+ I + G + + G S N
Sbjct: 636 AERTEEGQEFFDEMMS-KNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 694
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY SLI G + +EEM G+ P++ +++G ++ +V+ L+ +
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREM 754
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
N+ ++ Y G V E L + + P+ + +
Sbjct: 755 HSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 73 SWDALITSLQS-SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
++ +LI + S ++A+L+ E + ++G E + Y LI GK+ + +
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFE---EMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 751
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M ++ + P+ + +I G+V A L M + P+S TY FI G+
Sbjct: 752 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM-REKGIVPDSITYKEFIYGYLK 810
Query: 192 LGNV 195
G V
Sbjct: 811 QGGV 814
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 2/213 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIM 169
Y ++A+ + + A + +M G+ P A N LI A C G V L +F +
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF-LE 182
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ P+S TY ISG G +D K + + + V TY SLI+G +++
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN 242
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D R+ EEM S GI P++ +++GLC + + + ++ G + N
Sbjct: 243 VDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
L+ C+ ++ E E L+ + P+ L+
Sbjct: 303 LITGLCKEQKIQEAVELLDRMNLQGLKPDAGLY 335
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
V + +F M +G PDS + +LI G + A LF MV ++ P TY
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTY 230
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMM 241
+ I+G NVD ++ + G NV TY SL+ G K R +++ F E MM
Sbjct: 231 TSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMM 289
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P++ ++ GLC +K+ L + G K + + K++ +C + +
Sbjct: 290 ARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFR 349
Query: 302 ELEEQLETLTKCNQSPEVL 320
E L+ + +P L
Sbjct: 350 EAANFLDEMILGGITPNRL 368
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ + + A +FT M + P + SLI S +V A+ E M
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM- 253
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S+ +PN TY + + G G + + +A G N+ TY +LI G K +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-------WKIN 283
+ M G+ P + KV+ G CA K +FL ++ GG W I+
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 284 ENMAQKLVKCYC 295
+ ++V+ C
Sbjct: 374 VKTSNEVVRGLC 385
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGD 158
M +G + Y LI K Q + A+ + M QG+KPD+ ++ +I C S
Sbjct: 289 MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKF 348
Query: 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN------KWYAANIAAGFSV 212
A L E+++ PN T++ + + + N Y + + G SV
Sbjct: 349 REAANFLDEMILGG--ITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISV 406
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
V+T ESL+ K +F + +E+++ G IPS
Sbjct: 407 EVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPS 442
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 3/308 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y CLI L KV + A+ V M+ +G+K + ++ +I + D A ++FE MV
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E KP+ Y+ IS F +GN+D + +T+ +IHG K+ D
Sbjct: 547 -KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDM 605
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ M G +P++ ++ GL +R++++ L + G NE+ K+
Sbjct: 606 RRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKI 665
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
++ Y +G + E L N+ +V + + +++ S R+ M +
Sbjct: 666 MQGYASVGDTGKAFEYFTRLQ--NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSAR 723
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKL 410
+ S ++ R ++ DL K K TY ++ +AG +
Sbjct: 724 NIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRA 783
Query: 411 DSVINEMK 418
I EM+
Sbjct: 784 TQTIEEME 791
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SG++Q+ A+ V M A+ I +S V+N LI GDV A L + M E KP
Sbjct: 707 SGRMQS---ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM-KKEGVKP 762
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY +FIS S G+++ + A G N++TY +LI G +A + Y
Sbjct: 763 DIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCY 822
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDR------VKSFLKFLLGGGWKINENMAQKLV 291
EEM ++GI P + +L L +R + V + K ++ G ++ A
Sbjct: 823 EEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHWS 882
Query: 292 KCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFF 324
KC C++ EL E L+ + S H F
Sbjct: 883 KCLCKIEASGGELTETLQKTFPPDWSSHHHHHGF 916
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
E+ ++ G+ ++ A F M A+GI P S ++ SLI A D+ ALS M
Sbjct: 311 EFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKM 370
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E + + TY + GFS G+ +A + W+ ++N Y +I+ + +
Sbjct: 371 -KEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCN 429
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
+ + EM GI I I +++G
Sbjct: 430 MERAEALVREMEEEGIDAPIAIYHTMMDG 458
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 3/193 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
+ CLI+ K +P A+ +F M +G KPD FNSLI LC D + AL L M
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG-LCEVDEIKHALWLLRDM 520
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+S E N+ TY+ I+ F G + K + G ++ TY SLI G +A +
Sbjct: 521 IS-EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +E+M+ G PS ++ GLC ++ F K ++ G +
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639
Query: 290 LVKCYCELGRVDE 302
L+ C GR+++
Sbjct: 640 LINGLCRAGRIED 652
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 3/249 (1%)
Query: 91 LVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150
L LE D KG + + Y L+ K+ + A +V M A G+KP++ FN LI
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210
A + A+ +F M + KP+ T+++ ISG + + I+ G
Sbjct: 467 SAFCKEHRIPEAVEIFREM-PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
N TY +LI+ L+ + + EM+ G +++GLC ++D+ +S
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARS 585
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
+ +L G + L+ C G V+E E + + +P+++ F+ +I
Sbjct: 586 LFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT--FNSLING 643
Query: 331 YALSDRLDD 339
+ R++D
Sbjct: 644 LCRAGRIED 652
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
S + P T+ + F ++ +D+ G N Y++LIH K +
Sbjct: 210 SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 269
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
+ EEM +G +P V+ GLC +++ + +L G+ ++ L+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM 329
Query: 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C++GRVD ++ + K PE+++ F+ +I + RLDD + + M
Sbjct: 330 NGLCKIGRVDAAKDLFYRIPK----PEIVI--FNTLIHGFVTHGRLDDAKAVLSDMVT-- 381
Query: 352 LSFKSAEDV---EMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
S+ DV +I Y++ L++ D K +Y LV G+ + G
Sbjct: 382 -SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440
Query: 408 GKLDSVINEM 417
+ +V+NEM
Sbjct: 441 DEAYNVLNEM 450
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 114/314 (36%), Gaps = 16/314 (5%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A+ + M G PD+ FN +I LC D + + +
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRM 313
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ P+ TY ++G +G VDA + + + +LIHG +
Sbjct: 314 LIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP----EIVIFNTLIHGFVTHGRL 369
Query: 231 DSVDRFYEEMM-SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M+ S GI+P + ++ G + L + G K N
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
LV +C+LG++DE L ++ P + F+ +I + R+ + M +
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTV--GFNCLISAFCKEHRIPEAVEIFREMPR 487
Query: 350 QGLSFKSAEDVEMVICSYFRCAAYDRLD----LFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+G DV D + L D I TY+ L+ + R G
Sbjct: 488 KG----CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRG 543
Query: 406 LSGKLDSVINEMKF 419
+ ++NEM F
Sbjct: 544 EIKEARKLVNEMVF 557
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 8/299 (2%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A + M +G PD + L+ G V A LF + KP
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-----KPEI 353
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
++ I GF + G +D + + + G +V TY SLI+G K
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+M + G P++ +++G C K+D + L + G K N L+ +C+
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358
R+ E E + + P+V + F+ +I D + + + M +G+ +
Sbjct: 474 RIPEAVEIFREMPRKGCKPDV--YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531
Query: 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
++ R + L + + L TY+ L+ G RAG K S+ +M
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
V A+ V M +G KP+ + L+ G + A ++ M S++ KPN+ ++
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM-SADGLKPNTVGFN 463
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
IS F + + + G +V T+ SLI G + + +M+S
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 523
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G++ + ++ R ++ + + ++ G ++E L+K C G VD+
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Query: 304 EEQLETLTKCNQSP 317
E + + +P
Sbjct: 584 RSLFEKMLRDGHAP 597
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 12/199 (6%)
Query: 63 DIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKV 121
D++ FNS LI+ L K L W L M+ +G + Y LI +
Sbjct: 493 DVYTFNS-------LISGLCEVDEIKHAL---WLLRDMISEGVVANTVTYNTLINAFLRR 542
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+ A + M QG D +NSLI +G+V A SLFE M+ + + P++ +
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR-DGHAPSNIS 601
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
+ I+G G V+ ++ + G + ++ T+ SLI+G +A + + ++
Sbjct: 602 CNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
Query: 242 SLGIIPSIPILEKVLEGLC 260
+ GI P ++ LC
Sbjct: 662 AEGIPPDTVTFNTLMSWLC 680
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S S + LI L S + +E++ + +L+G+ + + LI + + +
Sbjct: 598 SNISCNILINGLCRSG--MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F ++A+GI PD+ FN+L+ + LC G V L + + PN +T+ +
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLM-SWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Query: 190 SSLGNVDAMNKWYAA 204
+D + AA
Sbjct: 715 IPQETLDRRRFYNAA 729
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 136/326 (41%), Gaps = 10/326 (3%)
Query: 97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
L KM KG E+ + Y +I +NV A+++FT M+ +GI+P+ +NSLI CLC
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 301
Query: 156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
+ G A L M+ + PN T+ A I F G + K Y I ++
Sbjct: 302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
TY SLI+G D +E M+S P++ +++G C ++++ +
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
+ G N L++ + G D ++ + + P+++ + G+ +
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA 392
L L EY + K + + +C + D DLF K
Sbjct: 481 LEKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKGVKPNVI 536
Query: 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418
Y +++G+ R GL + D++ EMK
Sbjct: 537 IYTTMISGFCRKGLKEEADALFREMK 562
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ +G + L
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVAL---IDRMVARGCQPDLFT 222
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+ + ME I+ D ++ ++I A +V AL+LF M
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM- 281
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I + G ++ + I + NV T+ +LI +K
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I P I ++ G C +LD K + ++ N L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+K +C+ RV+E E +++
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQ 423
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 5/243 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + +P A+ V M G +PD +SL+ C G ++ A++L + M
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQM 176
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
E Y+PN+ T++ I G +A G ++ TY ++++G K D
Sbjct: 177 FVME-YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 235
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D ++M I + I +++ LC + ++ + + G + N
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349
L++C C GR + L + + +P V+ FS +I + +L + E M K
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYDEMIK 353
Query: 350 QGL 352
+ +
Sbjct: 354 RSI 356
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ VF ++ ++PD +N +I +G V LF +S + KPN Y I
Sbjct: 484 ALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF-CSLSLKGVKPNVIIYTTMI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SGF G + + + G N TY +LI L+ D + +EM S G +
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V+ L R KS+L+ L
Sbjct: 603 GDASTISMVINMLHDGR---LEKSYLEML 628
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K ++ A ++ MEA I+ D +FN++I +
Sbjct: 138 VDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK 197
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 198 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ +++M+ I P I ++ G C +LD+ K +F+
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + + L+K +C+ RV++ E
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 1/176 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M + I PD +NSLI + A +FE MVS + + P+ TY+ I
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLI 332
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 333 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 392
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 107/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESC---LDE 110
IK ++D DIF +NS LI KA+ + E+ + K C LD
Sbjct: 282 IKRSIDP-DIFTYNS-------LINGFCMHDRLDKAKQMFEFMVSK------DCFPDLDT 327
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 388 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G + L
Sbjct: 447 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTL 506
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 507 IRAHLRDGDKAASAELIREMRSC 529
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 5/252 (1%)
Query: 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMH 129
S F ++ L++++ + KK LV+ G L Y LI + + A+
Sbjct: 9 SIFEFNKLLSAI--AKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISG 188
+ M G +P +SL+ C G ++ A++L + MV Y+P++ T+ I G
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMG-YRPDTITFTTLIHG 124
Query: 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
+ G N+ TY +++G K D D +M + I
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I +++ LC R +D + K + G + N L+ C C GR + + L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 309 TLTKCNQSPEVL 320
+ + +P ++
Sbjct: 245 DMIEKKINPNLV 256
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 2/210 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ D +FN++I +
Sbjct: 213 VDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
V AL+LF+ M ++ +PN TY + IS S G ++ + I + N+
Sbjct: 273 YRHVDDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K F ++ Y++M+ I P I ++ G C +LD+ K +F+
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEE 305
+ + L+K +C+ RV++ E
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I PD +NSL+ + A +FE MVS + + P+ TY+ I
Sbjct: 349 AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLI 407
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF V+ + + G + TY +LI G D D+ + +++M+S G+
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +L+GLC KL++ ++ K++ + +++ C+ G+VD+ +
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527
Query: 307 LETLTKCNQSPEVLLH 322
+L+ P V+ +
Sbjct: 528 FCSLSLKGVKPNVVTY 543
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 106/263 (40%), Gaps = 19/263 (7%)
Query: 55 IKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE--- 110
IK ++D DIF +NS L+ KA+ + E+ + K C +
Sbjct: 357 IKRSIDP-DIFTYNS-------LVNGFCMHDRLDKAKQMFEFMVSK------DCFPDVVT 402
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V +F M +G+ D+ + +LI GD A +F+ MV
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
S + P+ TY + G + G ++ + + + +++ Y ++I G KA
Sbjct: 463 S-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + G+ P++ ++ GLC++R L + LK + G N L
Sbjct: 522 DDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTL 581
Query: 291 VKCYCELGRVDELEEQLETLTKC 313
++ + G E + + C
Sbjct: 582 IRAHLRDGDKAASAELIREMRSC 604
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 3/211 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIM 169
Y LI + + A+ + M G +P +SL+ C G ++ A++L + M
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQM 181
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
V Y+P++ T+ I G + G N+ TY +++G K D
Sbjct: 182 VEMG-YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK 289
D +M + I + I +++ LC R +D + K + G + N
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
L+ C C GR + + L + + +P ++
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + A+ V M + GI PD++ + L+ G+V A+ L E M Y N+
Sbjct: 118 KANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKM-EDHGYPSNT 176
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+A + G LG+++ ++ + G + N TY L+ + K R D + +E
Sbjct: 177 VTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTDEAVKLLDE 236
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
++ G P++ +L G C + D + + L G+K N L++C C GR
Sbjct: 237 IIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGR 296
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK 355
+E L + +++P V+ ++ +I A R + + M K F+
Sbjct: 297 WEEANSLLAEMDGGDRAPSVVT--YNILINSLAFHGRTEQALQVLKEMSKGNHQFR 350
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 36 SVSSSNPLISRLL-QVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLE 94
+ +S NP+I+RL + V + LD + ++ +++A I SL + K +
Sbjct: 352 TATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNA-IGSLCEHNSKVQE---A 407
Query: 95 WRLDKMLKGNESCL--DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152
+ + + L + C D Y +I + N A + M G PD+ +++LI
Sbjct: 408 FYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRG 467
Query: 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212
G A+ + IM SE KP ++A I G + D + + +
Sbjct: 468 LCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRMP 527
Query: 213 NVQTYESLIHG 223
N TY L+ G
Sbjct: 528 NETTYAILVEG 538
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%)
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G NV L++ KA R E M+S GIIP ++ LC R +
Sbjct: 98 VTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNV 157
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
++ + G+ N LV+ C LG +++ + +E L + +P + F
Sbjct: 158 GYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSF 216
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 11/235 (4%)
Query: 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159
++KG E L Y L+ K AM +F + A+G K + +N L+ C G
Sbjct: 238 IVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRW 297
Query: 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD----AMNKWYAANIAAGFSVNVQ 215
A SL M + P+ TY+ I+ + G + + + N F V
Sbjct: 298 EEANSLLAEMDGGDR-APSVVTYNILINSLAFHGRTEQALQVLKEMSKGN--HQFRVTAT 354
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-KLDRVKSFLKF 274
+Y +I K D V + +EM+ P+ + LC K+ ++
Sbjct: 355 SYNPVIARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAI-GSLCEHNSKVQEAFYIIQS 413
Query: 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329
L + + ++ C G + L +T+C P+ H +S +IR
Sbjct: 414 LSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDA--HTYSALIR 466
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 129/305 (42%), Gaps = 17/305 (5%)
Query: 119 GKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
G+V++ A++ M Q G PD FN+L+ +G V A+ + ++M+ E Y P
Sbjct: 273 GRVED---ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ-EGYDP 328
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY++ ISG LG V + I S N TY +LI K +
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ S GI+P + +++GLC R + + G + +E L+ C
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 298 GRVDE---LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354
G++DE + +Q+E L+ C +S + ++ +I + +++ + E M G+S
Sbjct: 449 GKLDEALNMLKQME-LSGCARS----VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 355 KSAEDVEMV--ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
S ++ +C R D L I K + TY+ L+ + R G K
Sbjct: 504 NSVTYNTLIDGLCKSRRVE--DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 413 VINEM 417
++ M
Sbjct: 562 IVQAM 566
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 41 NPLISRLLQVPVSQIKTTLDSVDIF---AFNSSQFSWDALITSL-QSSSPKKAQLVLEWR 96
N L++ L + +K ++ +D+ ++ ++++++I+ L + K+A VL+
Sbjct: 299 NTLVNGLCKA--GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
+ + N Y LI+ K V A + + ++GI PD FNSLI +
Sbjct: 357 ITRDCSPNTVT---YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAANIAAGFSVNVQ 215
+ A+ LFE M S+ +P+ TY+ I S G +D A+N ++ G + +V
Sbjct: 414 RNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVI 471
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
TY +LI G KA + ++EM G+ + +++GLC R+++ + +
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+ G K ++ L+ +C G + + + ++ +T P+++ + SG+ +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M GIKPD + FN LI A + + A+ + E M S P+ KT+ + G+ G
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM-PSYGLVPDEKTFTTVMQGYIEEG 238
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPIL 252
++D + + G S + + ++HG K + F +EM + G P
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
++ GLC + + +L G+ + ++ C+LG V E E L+ +
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 313 CNQSPEVLLH 322
+ SP + +
Sbjct: 359 RDCSPNTVTY 368
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+F+++ LI SL S L + +++ L G + Y LI K A +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME--LSGCARSVITYNTLIDGFCKANKTREAEEI 492
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ME G+ +S +N+LI S V A L + M+ E KP+ TY++ ++ F
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM-EGQKPDKYTYNSLLTHFC 551
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G++ A + G ++ TY +LI G KA + + + GI +
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH 611
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLL 276
V++GL +RK + + +L
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREML 637
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 3/211 (1%)
Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK 180
+N AM +F M ++G +PD +N LI + G + AL++ + M S + +
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR-SVI 471
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY+ I GF + + G S N TY +LI G K+R + + ++M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ G P +L C + + ++ + G + + L+ C+ GRV
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 301 DELEEQLET--LTKCNQSPEVLLHFFSGIIR 329
+ + L + + N +P G+ R
Sbjct: 592 EVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197
G+KPD+ +N ++ L G+ + + + +S KP+ T++ I +
Sbjct: 149 GLKPDTHFYNRML-NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRP 207
Query: 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257
+ G + +T+ +++ G ++ D D R E+M+ G S + ++
Sbjct: 208 AILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVH 267
Query: 258 GLCARRKLDRVKSFLKFLLG-GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
G C +++ +F++ + G+ ++ LV C+ G V E ++ + +
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 317 PEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
P+V + SG+ +L + + ++ ++ + R
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 57/140 (40%)
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
LS+ + M+ KP++ Y+ ++ ++ + +A G +V T+ LI
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282
+A E+M S G++P V++G LD + ++ G
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257
Query: 283 NENMAQKLVKCYCELGRVDE 302
+ +V +C+ GRV++
Sbjct: 258 SNVSVNVIVHGFCKEGRVED 277
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 96 RLDKMLKGNESCL--------DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
R D + K +E+ L Y LIA K+ A V MEA+G PD+ FN
Sbjct: 660 RADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFN 719
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
SL+ V ALS + +M+ + PN TY+ I G S G + ++KW + +
Sbjct: 720 SLMHGYFVGSHVRKALSTYSVMMEAG-ISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKS 778
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
G + TY +LI G K + Y EM++ G++P ++ K+ +
Sbjct: 779 RGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQ 838
Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+ LK + G N + ++ C+L
Sbjct: 839 ARELLKEMGKRGVSPNTSTYCTMISGLCKL 868
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +++ M +GI D V+ L+ +GD+ A F++++ + PN TY A +
Sbjct: 315 ALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQV-PNVVTYTALV 373
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G++ + + NV TY S+I+G +K + +M ++
Sbjct: 374 DGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVV 433
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
P+ V++GL K + K + G + N + LV +GR+ E++
Sbjct: 434 PNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 491
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
+ M G PD F+S+I LC G V L + PN TY +
Sbjct: 249 YRDMVMSGFDPDVVTFSSIINR-LCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLF 307
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
Y+ + G V++ Y L+ G KA D ++ ++ ++ +P++
Sbjct: 308 KANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
+++GLC L + + +L N ++ Y + G ++E L +
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKM 427
Query: 311 TKCNQSP 317
N P
Sbjct: 428 EDQNVVP 434
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 5/248 (2%)
Query: 74 WDAL-ITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVF 131
WD + L S K ++ +W M KG E + + ++ K + + ++
Sbjct: 539 WDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLW 598
Query: 132 TSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
M++ GIKP S + +++ LC +G + A+ + M+ E + PN TY F+ S
Sbjct: 599 DKMKSCGIKP-SLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIH-PNLTTYRIFLDTSS 656
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
DA+ K + ++ G ++ Q Y +LI K +M + G IP
Sbjct: 657 KHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTV 716
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++ G + + S ++ G N +++ + G + E+++ L +
Sbjct: 717 TFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEM 776
Query: 311 TKCNQSPE 318
P+
Sbjct: 777 KSRGMRPD 784
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++M G+ PDS ++NSLI +G V +SL + + P+ + I
Sbjct: 79 AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 138
Query: 187 SGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
F +G + +A ++ S++ TY ++I G + D +F EM+ +G
Sbjct: 139 HSFCKVGRLS-----FAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMG 193
Query: 245 IIPSIPILEKVLEGLCARRKLDRVKSFL 272
I+P +++G C R K+ +
Sbjct: 194 ILPDTVSYNTLIDGFCKVGNFVRAKALV 221
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAM 128
F++ +I L + K ++ +E + L G N LD + G+++ V
Sbjct: 437 FTYGTVIDGLFKAG--KEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK--- 491
Query: 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFIS 187
+ M ++G+ D + SLI GD AL+ E M E P + +Y+ IS
Sbjct: 492 GLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEM--QERGMPWDVVSYNVLIS 549
Query: 188 GFSSLGNVDAMNKW-YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G V A W Y G ++ T+ +++ K D + + + +++M S GI
Sbjct: 550 GMLKFGKVGA--DWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK 607
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
PS+ V+ LC K++ L ++
Sbjct: 608 PSLMSCNIVVGMLCENGKMEEAIHILNQMM 637
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+++ M A G+ PD N LI + G + A+SL V S ++ TY+ ISG
Sbjct: 118 IYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVIS----IDTVTYNTVISGL 173
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
G D ++ + + G + +Y +LI G K +F +E+ L +I
Sbjct: 174 CEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHT 233
Query: 250 PIL 252
+L
Sbjct: 234 ILL 236
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + M GI PD+ +N+LI G+ V A +L + E + N T+ +
Sbjct: 182 AYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVD-----EISELNLITHTILL 236
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
S + N+ A+ + Y + +GF +V T+ S+I+ K EM + +
Sbjct: 237 SSYY---NLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVY 293
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+ +++ L + ++ G ++ + L+ + G + E E+
Sbjct: 294 PNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKT 353
Query: 307 LETLTKCNQSPEVLLH 322
+ L + NQ P V+ +
Sbjct: 354 FKMLLEDNQVPNVVTY 369
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG----NVD 196
P+ + +L+ +GD+ +A + M+ + PN TY + I+G+ G V
Sbjct: 364 PNVVTYTALVDGLCKAGDLSSAEFIITQMLE-KSVIPNVVTYSSMINGYVKKGMLEEAVS 422
Query: 197 AMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ K N+ GF TY ++I G KA + +EM +G+ + IL+ +
Sbjct: 423 LLRKMEDQNVVPNGF-----TYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDAL 477
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
+ L ++ VK +K ++ G +++ L+ + + G
Sbjct: 478 VNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGG 520
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 177 PNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVD 234
P+S+ +++ I F+ G V D ++ Y+ IA G S +V LIH K ++
Sbjct: 93 PDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSFAIS 152
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
++S+ + V+ GLC D FL ++ G + L+ +
Sbjct: 153 LLRNRVISIDTVT----YNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGF 208
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
C++G + ++ +++ N +L S L+A+ + D+
Sbjct: 209 CKVGNFVRAKALVDEISELNLITHTIL--LSSYYNLHAIEEAYRDM 252
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 120/304 (39%), Gaps = 13/304 (4%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + V A+ + ME GI PD +NSLI SG A + M E Y P+
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIY-PDV 256
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T++A I G V ++Y I ++ TY LI+G D + +
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGF 316
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+S G P + ++ G C +K++ + G N L++ YC G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD--RLDDVEYSVGRMGKQGLSFKSA 357
++ EE + C P ++ + + L+ L D +++ + M K G+ A
Sbjct: 377 LNVAEEIFRRMVFCGVHPNIITYN----VLLHGLCDNGKIEKALVILADMQKNGM---DA 429
Query: 358 EDVEMVICSYFRCAA---YDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414
+ V I C A D D++ TY ++ G + GL + D++
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALF 489
Query: 415 NEMK 418
+MK
Sbjct: 490 RKMK 493
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 7/313 (2%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
+++ L++ K++ ++++ M+ GI + N L+ C C CS + ALS
Sbjct: 83 DFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCS-QLSLALSFLGK 141
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ ++P+ T+ + ++GF V + + G+ NV Y ++I G K++
Sbjct: 142 MIKLG-HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSK 200
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
D+ M GI P + ++ GLC+ + + + +
Sbjct: 201 QVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFN 260
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348
L+ + GRV E EE E + + + P+++ +S +I + RLD+ E G M
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVT--YSLLIYGLCMYSRLDEAEEMFGFMV 318
Query: 349 KQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407
+G F ++I Y + + + LF + + TY L+ GY RAG
Sbjct: 319 SKG-CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377
Query: 408 GKLDSVINEMKFA 420
+ + M F
Sbjct: 378 NVAEEIFRRMVFC 390
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 3/189 (1%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
+L LF MV P+ + +S S + D + + G N+ T L+
Sbjct: 65 SLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILL 123
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + F +M+ LG PSI +L G C ++ ++G G+K
Sbjct: 124 NCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYK 183
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
N + ++ C+ +VD + L + K P+V+ ++ +I S R D
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVT--YNSLISGLCSSGRWSDAT 241
Query: 342 YSVGRMGKQ 350
V M K+
Sbjct: 242 RMVSCMTKR 250
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A +F M G+ P+ +N L+ +G + AL + M
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM- 422
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
+ TY+ I G G V DA + + + N G ++ TY +++ G K
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN-CQGLMPDIWTYTTMMLGLYKKGL 481
Query: 230 FDSVDRFYEEMMSLGIIPS 248
D + +M GI+P+
Sbjct: 482 RREADALFRKMKEDGILPN 500
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 166/401 (41%), Gaps = 38/401 (9%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S+ +D + + + + +++ LI L + + L +D+M+ KG + L
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL---IDRMVAKGCQPDLVT 223
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K + A ++ ME ++P ++N++I + AL+LF+ M
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 282
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY + IS + G ++ + I + +V T+ +LI +K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ Y+EM+ I PSI ++ G C +LD K +F++ + L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 291 VKCYCELGRVDELEEQLETLTK----------------------CNQSPEVLLHFFS-GI 327
+K +C+ RV+E E +++ C+ + E+ S G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSY-----FRCAA---YDRLD 377
+ L D G++ K + F+ + +E I +Y C A D D
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
LF + K Y+ +++G+ R G + D++ EMK
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 3/242 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI + +P A+ V M G +P+ +SL+ S + A++L + M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ Y+PN+ T++ I G +A G ++ TY +++G K D
Sbjct: 179 VTG-YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D +M + P + I +++GLC + +D + K + G + N L
Sbjct: 238 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 297
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ C C GR + L + + +P+V FS +I + +L + E M K+
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINPDVFT--FSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 351 GL 352
+
Sbjct: 356 SI 357
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ AM VF ++ ++P +N +I +G V LF +S + KP
Sbjct: 479 NGKLEK---AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF-CNLSLKGVKP 534
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ Y+ ISGF G+ + + + G N Y +LI L+ D ++
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+EM S G + V L R LD KSFL L
Sbjct: 595 KEMRSCGFAGDASTIGLVTNMLHDGR-LD--KSFLDML 629
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 73 SWDALITSL-QSSSPKKAQLVLEW-RLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
+++ L+ L ++ +KA +V E+ + KM E + Y +I K V +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKM----EPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F ++ +G+KPD +N++I G A +LF+ M + PNS Y+ I
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM-KEDGTLPNSGCYNTLIRARL 582
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQT 216
G+ +A + + GF+ + T
Sbjct: 583 RDGDREASAELIKEMRSCGFAGDAST 608
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 5/262 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML-KGNESCLDE 110
+S +D + + F++ LI L + + L +D+M+ +G + L
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVAL---VDQMVQRGCQPDLVT 225
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y ++ K ++ A+++ MEA IK + +FN++I + V A+ LF M
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM- 284
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ +PN TY++ I+ + G ++ + + + NV T+ +LI K
Sbjct: 285 ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKL 344
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++ +EEM+ I P ++ G C +LD K KF++ N L
Sbjct: 345 VEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404
Query: 291 VKCYCELGRVDELEEQLETLTK 312
+ +C+ RV++ E +++
Sbjct: 405 INGFCKCKRVEDGVELFREMSQ 426
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M + I PD+ +N LI + A +F+ MVS ++ PN +TY+ I+GF
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCK 412
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
V+ + + G N TY ++I G +A D DS +++M+S + I
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472
Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+L GLC+ KLD K+L ++N + +++ C+ G+V E
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ++ ++ + ++N++I +G V A LF S KP+ TY+ I
Sbjct: 487 ALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF----CSLSIKPDVVTYNTMI 542
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
SG S + + + G N TY +LI +L+ D + +EM S G +
Sbjct: 543 SGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFV 602
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
+ V L R LD KSFL L
Sbjct: 603 GDASTISLVTNMLHDGR-LD--KSFLNML 628
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 13/181 (7%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE------YKPNSK 180
A+ +F M P FN L+ A V ++ FE+++S E +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSA-------VAKMNKFELVISLGEQMQTLGISHDLY 119
Query: 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240
TY FI+ F + A + G+ ++ T SL++G ++ ++M
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300
+ +G P ++ GL K + + ++ G + + +V C+ G +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 301 D 301
D
Sbjct: 240 D 240
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 28/306 (9%)
Query: 5 CRVLSVAKSSRYLLMPLRF--DRLLCNTNTNS----TSVSSSNPLISRLLQVPVSQIKTT 58
CR LS A S+ +M L + D ++ NT N VS + L+ R++++ T
Sbjct: 136 CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLIT 195
Query: 59 LDS-VDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
L++ V+ N LI + + + ++ L+ M K ++ L
Sbjct: 196 LNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL--------- 246
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYK 176
AM + ME + IK D AV S+I LC G + A +LF M + +K
Sbjct: 247 ---------AMELLRKMEERNIKLD-AVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFK 295
Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236
+ TY+ I GF + G D K I S NV T+ LI +K D+
Sbjct: 296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355
Query: 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
+EMM GI P+ +++G C +L+ + ++ G + L+ YC+
Sbjct: 356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCK 415
Query: 297 LGRVDE 302
R+D+
Sbjct: 416 ANRIDD 421
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ L+GKV + A+ + M G +P+ + ++ SG A+ L M
Sbjct: 203 LCLNGKVSD---AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + GF ++ TY +LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL LK ++ G N L+ +
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ R++E + ++ + P+++ F+ +I Y ++R+DD
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMT--FNILINGYCKANRIDD 421
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 3/234 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ + + +A + G +PD+ +FN+L+ V AL L + MV +KP
Sbjct: 135 RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM-GHKPTL 193
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
T + ++G G V + GF N TY +++ K+ +
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M I +++GLC LD + + G+K + L+ +C GR
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
D+ + L + K SP V+ FS +I + +L + + + M ++G++
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVT--FSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M ++G PD FN LI + + L LF M S N+ TY+ +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM-SLRGVIANTVTYNTLV 445
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
GF G ++ K + ++ ++ +Y+ L+ G + + + ++ +
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKME 505
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
I I ++ G+C K+D L G K++ ++ C + + +
Sbjct: 506 LDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADIL 565
Query: 307 LETLTKCNQSPEVLLH 322
+T+ +P+ L +
Sbjct: 566 FRKMTEEGHAPDELTY 581
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ ++ +N+L+ SG +
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MV S +P+ +Y + G G ++ + + + +++ Y +I
Sbjct: 457 AKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIII 515
Query: 222 HGSLKARDFD 231
HG A D
Sbjct: 516 HGMCNASKVD 525
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K +++ A+ VF ME +GI+ D+ +N+LI SG A L MV + PN
Sbjct: 196 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV-KRKIDPNV 254
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ A I F GN+ Y I NV TY SLI+G ++
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314
Query: 240 MMSLGIIPSIPILEKVLEGLC-ARRKLDRVKSFLKF----LLGGGWKINENMAQKLVKCY 294
M+S G P + ++ G C ++R D +K F + L+G + N L+ Y
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYN-----TLIHGY 369
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLH 322
C+ G+++ ++ + C SP+++ +
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTY 397
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSGDVVTALSLFE 167
+ LI K N+ A +++ M + + P+ +NSLI C C GD A +F+
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD---AKYMFD 313
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+MVS + P+ TY+ I+GF V+ K + G + TY +LIHG +A
Sbjct: 314 LMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA 372
Query: 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
+ + + M+ G+ P I +L+ LC K+++ ++ L ++
Sbjct: 373 GKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITY 432
Query: 288 QKLVKCYCELGRVDELEEQ---LETLTKCNQSPEVLLHF--FSGIIR 329
+++ C R D+L+E +LT+ P+ + + SG+ R
Sbjct: 433 NIIIQGLC---RTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCR 476
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 117 LSGKVQNVPF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
L+G Q F A+ + SM+ G P+ ++N++I + D+ AL +F M +
Sbjct: 156 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCM-EKKG 214
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
+ ++ TY+ ISG S+ G + + NV + +LI +K +
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
Y+EM+ ++P++ ++ G C L K ++ G + L+ +
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334
Query: 295 CELGRVDE 302
C+ RV++
Sbjct: 335 CKSKRVED 342
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 124/318 (38%), Gaps = 23/318 (7%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ ++ + K+ ++++ ME GI D F LI C C CS + L ++
Sbjct: 81 DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKM 140
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGN--------VDAMNKWYAANIAAGFSVNVQTYESL 220
M ++P+ T + ++GF GN VD+M+ + GF NV Y ++
Sbjct: 141 M--KLGFRPSIVTLGSLLNGFCQ-GNRFQEAVSLVDSMDGF-------GFVPNVVIYNTV 190
Query: 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280
I+G K RD ++ + M GI ++ GL + L+ ++
Sbjct: 191 INGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKI 250
Query: 281 KINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340
N L+ + + G + E + + + + P V ++ +I + + L D
Sbjct: 251 DPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFT--YNSLINGFCIHGCLGDA 308
Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVA 399
+Y M +G F +I + + D + LF + TY+ L+
Sbjct: 309 KYMFDLMVSKG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 367
Query: 400 GYRRAGLSGKLDSVINEM 417
GY +AG V N M
Sbjct: 368 GYCQAGKLNVAQKVFNRM 385
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A SLF M+ S P+ + ++ + + D + Y G S ++ ++ LI
Sbjct: 63 AFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
H + +MM LG PSI L +L G C + S + + G G+
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 181
Query: 282 INENMAQKLVKCYCE 296
N + ++ C+
Sbjct: 182 PNVVIYNTVINGLCK 196
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 18/301 (5%)
Query: 5 CRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRL-LQVPVSQIKTTLDSVD 63
CR L +A S+ ++ L ++ NT T ST LI+ L L+ VS+ +D +
Sbjct: 136 CRKLCLAFSAMGKIIKLGYEP---NTITFST-------LINGLCLEGRVSEALELVDRMV 185
Query: 64 IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLK-GNESCLDEYACLIALSGKVQ 122
+ + L+ L S + ++L +DKM++ G + Y ++ + K
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLL---IDKMVEYGCQPNAVTYGPVLNVMCKSG 242
Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKT 181
AM + ME + IK D AV S+I LC G + A +LF M + N T
Sbjct: 243 QTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIIT 300
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I GF + G D K I + NV T+ LI +K + ++EM+
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
GI P +++G C LD+ + ++ G N L+ YC+ R+D
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 420
Query: 302 E 302
+
Sbjct: 421 D 421
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 5/211 (2%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+ M + I P+ F+ LI + + G + A L + M+ P++ TY + I GF
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGF 378
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
++D N+ ++ G N++T+ LI+G KA D + +M G++
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309
+++G C KL+ K + ++ N + L+ C+ G E E+ LE
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG---ESEKALEI 495
Query: 310 LTKCNQSP-EVLLHFFSGIIRLYALSDRLDD 339
K +S E+ + ++ II + ++DD
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDD 526
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 6/225 (2%)
Query: 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE 174
+ LSGK AM + M G +P++ + ++ SG A+ L M
Sbjct: 203 LCLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-EERN 258
Query: 175 YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234
K ++ Y I G G++D + G + N+ TY LI G A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
+ +M+ I P++ +++ KL + K ++ G + L+ +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 295 CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
C+ +D+ + ++ + P + F+ +I Y ++R+DD
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNI--RTFNILINGYCKANRIDD 421
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 1/215 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG + + + LI K + + +F M +G+ D+ +N+LI G +
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A LF+ MVS + PN TY + G G + + + + +++ Y +I
Sbjct: 457 AKELFQEMVS-RKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
HG A D + + G+ P + ++ GLC + L + + + G
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575
Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316
+ L++ + G + + +E L +C S
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 124/323 (38%), Gaps = 7/323 (2%)
Query: 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143
+ K+ LVL LKG L + +I + + + A + G +P++
Sbjct: 99 AKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNT 158
Query: 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYA 203
F++LI G V AL L + MV +KP+ T + ++G G
Sbjct: 159 ITFSTLINGLCLEGRVSEALELVDRMVEM-GHKPDLITINTLVNGLCLSGKEAEAMLLID 217
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
+ G N TY +++ K+ +M I +++GLC
Sbjct: 218 KMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323
LD + + G N L+ +C GR D+ + L + K +P V+
Sbjct: 278 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT-- 335
Query: 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI 383
FS +I + +L + E M +G++ + + I + + D+ + +D +
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL-IDGFCKENHLDKANQMVDLM 394
Query: 384 --KGSYKLRRATYDFLVAGYRRA 404
KG R T++ L+ GY +A
Sbjct: 395 VSKGCDPNIR-TFNILINGYCKA 416
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 4/149 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F +E ++ D ++N +I + V A LF + + KP KTY+ I
Sbjct: 492 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF-CSLPLKGVKPGVKTYNIMI 550
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G G + + G + + TY LI L D + EE+ G
Sbjct: 551 GGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFS 610
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
++ V++ L R KSFL L
Sbjct: 611 VDASTIKMVIDMLSDGR---LKKSFLDML 636
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 23/304 (7%)
Query: 33 NSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF-----SWDALITSLQSSSPK 87
N SV S LI +L+ +S SV +A N F +++ALI SL K
Sbjct: 86 NEASVKLSPALIEEVLK-KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESL----GK 140
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALS-GKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
Q L W L +K + E LI+ + + V A+ F ME G K +S+ F
Sbjct: 141 IKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDF 200
Query: 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS---SLGNVDAMNKWYA 203
N ++ S +V A +F+ M + ++P+ K+Y + G+ +L VD +N+
Sbjct: 201 NRMLDTLSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMK 259
Query: 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
GF +V Y +I+ KA+ ++ RF+ EM PS I ++ GL + +
Sbjct: 260 DE---GFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEK 316
Query: 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL-----EEQLETLTKCNQSPE 318
KL+ F + G+ + LV YC R+++ E +L+ + ++ +
Sbjct: 317 KLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYD 376
Query: 319 VLLH 322
++LH
Sbjct: 377 IILH 380
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 85/236 (36%), Gaps = 37/236 (15%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
+G E + Y +I K + A+ F ME + KP +F SLI +
Sbjct: 261 EGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLND 320
Query: 162 ALSLFEIMVSS-----------------------EEYK-----------PNSKTYDAFIS 187
AL FE SS + YK PN++TYD +
Sbjct: 321 ALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILH 380
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
L + + Y V TYE ++ D + ++EM G++P
Sbjct: 381 ---HLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLP 437
Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
+ + ++ LC KLD + +L G + +M +L + + GR D++
Sbjct: 438 GMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKV 493
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 116/280 (41%), Gaps = 13/280 (4%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGN-ESCLDEYACLIALSGKVQN 123
F SS F+ L T +S + AQ V DKM K E + Y L+ G+ N
Sbjct: 193 FKMESSDFN-RMLDTLSKSRNVGDAQKVF----DKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
+ V M+ +G +PD + +I A + A+ F M KP+ +
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM-EQRNCKPSPHIFC 306
Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
+ I+G S ++ +++ + ++GF + TY +L+ ++ + + +EM
Sbjct: 307 SLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366
Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303
G+ P+ + +L L ++ R K + + + + +V+ +C R+D
Sbjct: 367 GVGPNARTYDIILHHLI---RMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMA 423
Query: 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV-EY 342
+ + + P +H FS +I ++LD+ EY
Sbjct: 424 IKIWDEMKGKGVLPG--MHMFSSLITALCHENKLDEACEY 461
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 135/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI+ GK ++ + M G+ P + ++I A G++ AL LF+ M
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG 643
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ Y+ I+ FS LGN NV+TY +L +
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG 703
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++ + +EM+ P+ +E ++E L +L +++ F++
Sbjct: 704 ETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQ 746
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K + + A+ M ++G PD +N+++ A G V A+ + +SS+ P
Sbjct: 391 KEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN-QLSSKGCSPVL 449
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
TY+ I G + G K A + TY SL+ G + D +F+ E
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
+GI P+ ++ GLC R+ DR FL F++ G K NE L++ G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Query: 300 VDELEEQLETLTKCNQS 316
E E L L CN+
Sbjct: 570 AKEALELLNEL--CNKG 584
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 4/194 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A + +E G PD +N +I +G++ ALS+ + M S P+ TY+ +
Sbjct: 156 AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTIL 211
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G + + + +V TY LI + + + +EM G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ G+C +LD FL + G + N +++ C GR + E+
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 307 LETLTKCNQSPEVL 320
L + + SP V+
Sbjct: 332 LADMLRKGFSPSVV 345
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 11/298 (3%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK++ AM V M + PD + LI A V A+ L + M P
Sbjct: 217 SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGCTP 272
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ TY+ ++G G +D K+ ++G NV T+ ++ + ++
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+M+ G PS+ ++ LC + L R L+ + G + N L+ +C+
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
++D E LE + P+++ ++ ++ +++D + ++ +G S
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVT--YNTMLTALCKDGKVEDAVEILNQLSSKGCS-PVL 449
Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVI 414
VI + + LD ++ K TY LV G R GK+D I
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR---EGKVDEAI 504
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
KG L Y +I K A+ + M A+ +KPD+ ++SL+ G V
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ F +PN+ T+++ + G D + I G N +Y LI
Sbjct: 503 AIKFFH-EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561
Query: 222 HG 223
G
Sbjct: 562 EG 563
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 12/208 (5%)
Query: 147 NSLICACLCSGDVVTALSLF-----EIMVSSEEYKPNSKTYDAFISGFSSL--GNVDAMN 199
N L +C SG + + + L +++ S K S + F +L G ++
Sbjct: 28 NKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKFETLSSGYSNSNG 87
Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
+ +++ + F++ + + ++ + + +F E M+ G +P I ++ G
Sbjct: 88 NGHYSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGF 147
Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
C K + L+ L G G + ++ YC+ G E+ L L + + SP+V
Sbjct: 148 CRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAG---EINNALSVLDRMSVSPDV 204
Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+ ++ I+R S +L + RM
Sbjct: 205 VT--YNTILRSLCDSGKLKQAMEVLDRM 230
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ L+ + V A+ F E GI+P++ FNS++ S A+ M+
Sbjct: 487 YSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMI 546
Query: 171 SSEEYKPNSKTYDAFISGFSSLG 193
+ KPN +Y I G + G
Sbjct: 547 -NRGCKPNETSYTILIEGLAYEG 568
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F M + I P+ +NSLI + A +F +MVS ++ P+ TY+ I
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLI 387
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF V + + G N TY +LIHG +A D D+ +++M+S G+
Sbjct: 388 NGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P+I +L+GLC KL++ ++L + + + + C+ G+V++ +
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507
Query: 307 LETLTKCNQSPEVL 320
+L+ P+V+
Sbjct: 508 FCSLSLKGVKPDVI 521
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 3/249 (1%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
+S+ +D + + ++ L+ L + + L R+ ++KG + L Y
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM--VVKGCQPDLVTY 208
Query: 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171
+I K A+++ ME I+ D +++++I + V AL+LF M
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-D 267
Query: 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231
++ +P+ TY + IS + G ++ + + + NV T+ SLI K
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLI 327
Query: 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291
++ ++EM+ I P+I ++ G C +LD + ++ + L+
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLI 387
Query: 292 KCYCELGRV 300
+C+ +V
Sbjct: 388 NGFCKAKKV 396
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 5/256 (1%)
Query: 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146
KK LV+ + + G L Y +I + + FA+ + M G P
Sbjct: 79 KKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTL 138
Query: 147 NSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205
NSL+ C G+ ++ A++L + MV Y+P++ T+ + G
Sbjct: 139 NSLLNG-FCHGNRISEAVALVDQMVEM-GYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265
+ G ++ TY ++I+G K + D +M I + I V++ LC R +
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325
D + + G + + L+ C C GR + L + + +P V+ F+
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT--FN 314
Query: 326 GIIRLYALSDRLDDVE 341
+I +A +L + E
Sbjct: 315 SLIDAFAKEGKLIEAE 330
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 3/214 (1%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEI 168
E++ L++ K++ + ME G+ + +N +I CLC ++ AL++
Sbjct: 67 EFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI-NCLCRRSQLSFALAILGK 125
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M+ Y P+ T ++ ++GF + + G+ + T+ +L+HG +
Sbjct: 126 MMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 184
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
E M+ G P + V+ GLC R + D + L + G + + +
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH 322
++ C+ VD+ + P+V +
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
A+ LF MV S + P+ + +S + + D + + G S N+ TY +I
Sbjct: 49 AVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI 107
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
+ + +MM LG PSI L +L G C ++ + + ++ G++
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 167
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV++ +F S+ +G+KPD +N++I G A +LF I + + P
Sbjct: 498 AGKVED---GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLF-IKMKEDGPLP 553
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+S TY+ I G+ A + + F+ + TY
Sbjct: 554 DSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY 593
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 135/350 (38%), Gaps = 48/350 (13%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQG------IKPDSAVFNSLICACLCSGDVVTALSLFE 167
LI K + V A+ VF M + IK DS FN+LI G + A L
Sbjct: 335 LINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLV 394
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGN--------------------------VDAMNKW 201
M E PN+ TY+ I G+ G V M +
Sbjct: 395 RMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRH 454
Query: 202 YAANIAA---------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ N+A G NV TY +LIH + + +YE+M+ G P I
Sbjct: 455 HGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIY 514
Query: 253 EKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311
++ GLC RR D ++ K L GG+ ++ L+ +C+ +++ E L +
Sbjct: 515 YALISGLCQVRRDHDAIRVVEK-LKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 573
Query: 312 KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371
K + P+ + ++ +I + + VE + +M + GL + VI +Y
Sbjct: 574 KEGKKPDSIT--YNTLISFFGKHKDFESVERMMEQMREDGLD-PTVTTYGAVIDAYCSVG 630
Query: 372 AYDR-LDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
D L LF D + Y+ L+ + + G G+ S+ EMK
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM 680
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%)
Query: 89 AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
A+ V E D +G + Y LI+ GK ++ + M G+ P + +
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGA 621
Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
+I A G++ AL LF+ M + PN+ Y+ I+ FS LGN
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK 681
Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
NV+TY +L + +++ + +EM+ P+ +E ++E L +L ++
Sbjct: 682 MVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKL 741
Query: 269 KSFLK 273
+ F++
Sbjct: 742 RKFMQ 746
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 101 LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI---CACLCSG 157
+KGN + Y LI V NV AM+ + M G PD+ ++ +LI C
Sbjct: 472 VKGN---VVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDH 528
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
D + + + + + Y+ I F N + + + G + TY
Sbjct: 529 DAIRVVE----KLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITY 584
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
+LI K +DF+SV+R E+M G+ P++ V++ C+ +LD K +G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKD-MG 643
Query: 278 GGWKINENMA--QKLVKCYCELG 298
K+N N L+ + +LG
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLG 666
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 159/372 (42%), Gaps = 14/372 (3%)
Query: 52 VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111
VS + + F+ +S+ +LI++ +S + + + ++++ G + L Y
Sbjct: 189 VSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE--DGCKPTLITY 246
Query: 112 ACLIALSGKVQNVPFA--MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169
++ + GK+ P+ + M++ GI PD+ +N+LI C A +FE M
Sbjct: 247 NVILNVFGKM-GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305
Query: 170 VSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229
++ + + TY+A + + K + GFS ++ TY SLI S ARD
Sbjct: 306 KAAG-FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI--SAYARD 362
Query: 230 --FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287
D +M G P + +L G K++ S + + G K N
Sbjct: 363 GMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422
Query: 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347
+K Y G+ E+ + + + C SP+++ ++ ++ ++ + +V M
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVT--WNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 348 GKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406
+ G E +I +Y RC ++++ + ++ + +TY+ ++A R G+
Sbjct: 481 KRAGF-VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 407 SGKLDSVINEMK 418
+ + V+ EM+
Sbjct: 540 WEQSEKVLAEME 551
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
L+ + K +P A F+ ++ +G PD NS++ V A + + M
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM-KER 658
Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
+ P+ TY++ + S + + +A G ++ +Y ++I+ +
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
R + EM + GI+P + + A + +++++ G + N+N +V
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Query: 294 YCELGRVDELEEQLETL 310
YC+L R DE + +E L
Sbjct: 779 YCKLNRKDEAKLFVEDL 795
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
VF M+ G P+ FN+LI A G A++++ M+ + P+ TY+ ++
Sbjct: 476 VFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAAL 534
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G + K A N TY SL+H ++ + EE+ S G+I
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS-GVIEPR 593
Query: 250 PILEKVLEGLCAR 262
+L K L +C++
Sbjct: 594 AVLLKTLVLVCSK 606
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 88 KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
KA VL++ ++ G + Y L+ + + + + + + A+GIKPD +N
Sbjct: 647 KANGVLDYMKER---GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703
Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
++I A + + A +F M +S P+ TY+ FI +++ + I
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRNS-GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP------ILEKVLE 257
G N TY S++ G K D F E++ +L P P +LE++++
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLD--PHAPKGEDLRLLERIVK 816
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 123/340 (36%), Gaps = 81/340 (23%)
Query: 87 KKAQLVL---EWRLDKMLKGNESCLDE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
KK L L +W + + K +S LD A +I++ GK V A ++F ++ G
Sbjct: 149 KKFDLALRAFDWFMKQ--KDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSL 206
Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
D + SLI A SG A+++F+ M + KP TY+ ++ F +G W
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKM-EEDGCKPTLITYNVILNVFGKMGT-----PW 260
Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
+ + E+M S GI P ++ C
Sbjct: 261 -----------------------------NKITSLVEKMKSDGIAPDAYTYNTLIT-CCK 290
Query: 262 RRKLDR-VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320
R L + + + G+ ++ L+ Y + R E + L + SP ++
Sbjct: 291 RGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIV 350
Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
++ +I YA LD+ +M ++G + D+F
Sbjct: 351 T--YNSLISAYARDGMLDEAMELKNQMAEKGT----------------------KPDVF- 385
Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420
TY L++G+ RAG S+ EM+ A
Sbjct: 386 ------------TYTTLLSGFERAGKVESAMSIFEEMRNA 413
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A ++ M + I P+ ++SLI + A + E+M+ ++ PN TY+ I
Sbjct: 342 AEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIR-KDCLPNVVTYNTLI 400
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GF VD + + G N TY +LIHG +ARD D+ +++M+S+G+
Sbjct: 401 NGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVH 460
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFL 275
P+I +L+GLC KL + ++L
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
A+++FT ME +G++P+ ++SLI +CLC+ G A L M+ + PN T+ A
Sbjct: 272 ALNLFTEMENKGVRPNVITYSSLI-SCLCNYGRWSDASRLLSDMIE-RKINPNLVTFSAL 329
Query: 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
I F G + K Y I N+ TY SLI+G + E M+
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
+P++ ++ G C +++D+ + + G N L+ + + D +
Sbjct: 390 LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 306 QLETLTKCNQSPEVLLH 322
+ + P +L +
Sbjct: 450 VFKQMVSVGVHPNILTY 466
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 2/217 (0%)
Query: 97 LDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
+D+M+ +G + L Y ++ K + A+++ MEA I+ + +++++I +
Sbjct: 206 IDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCK 265
Query: 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215
AL+LF M ++ +PN TY + IS + G ++ + I + N+
Sbjct: 266 YRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
T+ +LI +K ++ YEEM+ I P+I ++ G C +L K L+ +
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 276 LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
+ N L+ +C+ RVD+ E +++
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192
M G +PD NSL+ C G+ ++ A++L + MV YKP++ T+ I G
Sbjct: 139 MMKLGYEPDIVTLNSLLNG-FCHGNRISDAVALVDQMVEMG-YKPDTVTFTTLIHGLFLH 196
Query: 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252
+ G ++ TY ++++G K D D +M + I ++ I
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312
V++ LC R D + + G + N L+ C C GR + L + +
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE 316
Query: 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
+P ++ FS +I + +L E
Sbjct: 317 RKINPNLVT--FSALIDAFVKKGKLVKAE 343
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P+ +N+LI + V + LF M S N+ TY I GF + D
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNAQM 449
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
+ ++ G N+ TY L+ G K +E + + P I ++EG+C
Sbjct: 450 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 509
Query: 261 ARRK 264
K
Sbjct: 510 KAGK 513
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 54/387 (13%)
Query: 73 SWDALIT-SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131
+++ LI S + +KA+ L+W + K + + Y+ +I K + A+ +F
Sbjct: 151 TYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPD---VFSYSTVINDLAKAGKLDDALELF 207
Query: 132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
M +G+ PD +N LI L D TA+ L++ ++ PN KT++ ISG S
Sbjct: 208 DEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSK 267
Query: 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251
G VD K + ++ TY SLIHG A + D + + E+ +
Sbjct: 268 CGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVT 327
Query: 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA-------QKLVKCYCELGRVDE-- 302
+L G C + ++K L+ W+I E+ L+K E G++DE
Sbjct: 328 YNTMLGGFC---RCGKIKESLEL-----WRIMEHKNSVNIVSYNILIKGLLENGKIDEAT 379
Query: 303 ------------------------------LEEQLETLTKCNQSPEVL-LHFFSGIIRLY 331
+ + L + + S L ++ ++ II
Sbjct: 380 MIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCL 439
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI-KGSYKLR 390
RL++ V M K G+ S +I R + FL + K +
Sbjct: 440 CKKKRLEEASNLVKEMSKHGVELNS-HVCNALIGGLIRDSRLGEASFFLREMGKNGCRPT 498
Query: 391 RATYDFLVAGYRRAGLSGKLDSVINEM 417
+Y+ L+ G +AG G+ + + EM
Sbjct: 499 VVSYNILICGLCKAGKFGEASAFVKEM 525
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 15/257 (5%)
Query: 53 SQIKTTLDSVDIFAFNSSQ--FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110
+IK +L+ I +S S++ LI L + K + + WRL + D+
Sbjct: 339 GKIKESLELWRIMEHKNSVNIVSYNILIKGLLENG-KIDEATMIWRL---MPAKGYAADK 394
Query: 111 YACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEI 168
I + G N V A+ V +E+ G D + S+I CLC + S
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII-DCLCKKKRLEEASNLVK 453
Query: 169 MVSSEEYKPNSKTYDAFISGF---SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225
+S + NS +A I G S LG + N G V +Y LI G
Sbjct: 454 EMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKN---GCRPTVVSYNILICGLC 510
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
KA F F +EM+ G P + +L GLC RK+D L G + +
Sbjct: 511 KAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVM 570
Query: 286 MAQKLVKCYCELGRVDE 302
M L+ C +G++D+
Sbjct: 571 MHNILIHGLCSVGKLDD 587
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
M G KPD ++ L+C + AL L+ + S + + ++ I G S+G
Sbjct: 525 MLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSG-LETDVMMHNILIHGLCSVG 583
Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
+D A + N+ TY +L+ G K D + + M +G+ P I
Sbjct: 584 KLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYN 643
Query: 254 KVLEGLCARRKLDRVKSFL 272
+++GLC R + F
Sbjct: 644 TIMKGLCMCRGVSYAMEFF 662
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 5/227 (2%)
Query: 115 IALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
I + G ++N + A ++ M A+G D + I +G V AL + + + SS
Sbjct: 364 ILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESS 423
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
+ + Y + I ++ + G +N +LI G ++
Sbjct: 424 GGH-LDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGE 482
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
F EM G P++ ++ GLC K +F+K +L GWK + L+
Sbjct: 483 ASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLC 542
Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRL 337
C ++D E + +V++H G+ + L D +
Sbjct: 543 GLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAM 589
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
AL +F+ M +P ++Y+ ++ F + +A AG + N+QTY LI
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156
Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
S K ++F+ F + M G P + V+ L KLD
Sbjct: 157 KMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLD 201
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/207 (16%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273
+++Y +L++ ++A+ + V+ + + G+ P++ +++ C +++ ++ + FL
Sbjct: 114 IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLD 173
Query: 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLY 331
++ G+K + ++ + G++D+ E + +++ +P+V + G ++
Sbjct: 174 WMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK-- 231
Query: 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRR 391
D +E R+ + + + + ++I +C D + +K + + +
Sbjct: 232 -EKDHKTAMELW-DRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Query: 392 A-TYDFLVAGYRRAGLSGKLDSVINEM 417
TY L+ G AG K +SV NE+
Sbjct: 290 LYTYSSLIHGLCDAGNVDKAESVFNEL 316
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE 167
L Y+ L+ + + + A+ ++ G++ D + N LI G + A+++
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMA 593
Query: 168 IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
M N TY+ + GF +G+ + + G ++ +Y +++ G
Sbjct: 594 NM-EHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMC 652
Query: 228 RDFDSVDRFYEEMMSLGIIPSI 249
R F+++ + GI P++
Sbjct: 653 RGVSYAMEFFDDARNHGIFPTV 674
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 1/195 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I S K+ V A+ +F ME G++ D+ +NSL+ CSG A L MV
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN T+ A I F G K Y +V TY SLI+G
Sbjct: 237 -MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRV 295
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
D + + M++ G +P + ++ G C +++D + + G + +
Sbjct: 296 DEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTI 355
Query: 291 VKCYCELGRVDELEE 305
++ Y + GR D +E
Sbjct: 356 IQGYFQAGRPDAAQE 370
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 6/279 (2%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + + ME G +PD ++N++I G V A+ LF+ M + + ++ TY++ +
Sbjct: 158 AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAVTYNSLV 216
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+G G + + NV T+ ++I +K F + YEEM +
Sbjct: 217 AGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 276
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P + ++ GLC ++D K L ++ G + L+ +C+ RVDE +
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366
+ + + + ++ II+ Y + R D + RM + + ++ + +C
Sbjct: 337 FREMAQRGLVGDTIT--YNTIIQGYFQAGRPDAAQEIFSRMDSRP-NIRTYSILLYGLCM 393
Query: 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
+R L LF + K +L TY+ ++ G + G
Sbjct: 394 NWRVEK--ALVLFENMQKSEIELDITTYNIVIHGMCKIG 430
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A +F+ M++ +P+ ++ L+ + V AL LFE M SE + + TY+ I
Sbjct: 368 AQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE-IELDITTYNIVI 423
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
G +GNV+ + + G +V +Y ++I G + R +D D Y +M G++
Sbjct: 424 HGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483
Query: 247 P 247
P
Sbjct: 484 P 484
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 14/200 (7%)
Query: 72 FSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFA 127
F++++LI L +A+ +L+ + K CL + Y LI K + V
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMVTK------GCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187
+F M +G+ D+ +N++I +G A +F M S +PN +TY +
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS----RPNIRTYSILLY 389
Query: 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
G V+ + + +++ TY +IHG K + + + + G+ P
Sbjct: 390 GLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKP 449
Query: 248 SIPILEKVLEGLCARRKLDR 267
+ ++ G C +R+ D+
Sbjct: 450 DVVSYTTMISGFCRKRQWDK 469
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 46/257 (17%)
Query: 82 QSSSPKKAQLVLEWRLD---KMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ 137
++ S K++ + LE +D KM++ + +++ +++ K +N + +F ME
Sbjct: 39 RTFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVC 98
Query: 138 GIKPDSAVFNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196
GI D +N +I C C CS F+ S +G +
Sbjct: 99 GIGHDLYSYNIVINCLCRCS---------------------------RFVIALSVVGKM- 130
Query: 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ G+ +V T SLI+G + R FD++D +M +G P + I +
Sbjct: 131 ---------MKFGYEPDVVTVSSLINGFCQGNRVFDAID-LVSKMEEMGFRPDVVIYNTI 180
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
++G C ++ + G + + LV C GR + + + +
Sbjct: 181 IDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 240
Query: 316 SPEVLLHFFSGIIRLYA 332
P V+ F+ +I ++
Sbjct: 241 VPNVIT--FTAVIDVFV 255
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 8/317 (2%)
Query: 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
D+ML+ N+ + L+ + + A ++ M++ G+KPD FN+L A G
Sbjct: 453 DEMLQPNDRTCN---ILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 509
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
TA + + + KPN +T ++G+ G ++ +++ G N+ +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
SLI G L D D V + M G+ P + ++ + + R + +L
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629
Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337
GG + + L K Y G ++ E+ L + K P V++ ++ II + + +
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVI--YTQIISGWCSAGEM 687
Query: 338 DDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATYD 395
+M G GLS + E +I + + + L ++G + R T
Sbjct: 688 KKAMQVYKKMCGIVGLS-PNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQ 746
Query: 396 FLVAGYRRAGLSGKLDS 412
+ G++ G+S D+
Sbjct: 747 LIADGWKSIGVSNSNDA 763
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/416 (20%), Positives = 171/416 (41%), Gaps = 44/416 (10%)
Query: 7 VLSVAKSSRYLLMPLR-FDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQ-IKTTLDSVDI 64
V +V K S + LR F ++C+ T V S L++ L++ Q + +++
Sbjct: 288 VEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIE 347
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
S ++ L+T+L + L L +++K ++ L + +I S + N+
Sbjct: 348 EGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL--FNAIINASSESGNL 405
Query: 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184
AM +F M+ G KP ++ FN+LI G + + L ++M+ E +PN +T +
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 185 FISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLK-ARDFDSVDRFYEEMMS 242
+ + + + +A N Y + G +V T+ +L + + D M+
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQ-SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLH 524
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
+ P++ ++ G C K++ F + G N + L+K + + +D
Sbjct: 525 NKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG 584
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
+ E ++ + + P+V+ FS ++ ++ SVG M
Sbjct: 585 VGEVVDLMEEFGVKPDVVT--FSTLMNAWS----------SVGDMK-------------- 618
Query: 363 VICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
RC +++ D ++G + L GY RAG K + ++N+M+
Sbjct: 619 ------RCE-----EIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 5/308 (1%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y C I + K + A +F M A G+ P + + SLI +V L + +
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELL-VEM 408
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ TY + G S G++D IA+G NV Y +LI L+ F
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
R +EM GI P I ++ GL +++D +SFL ++ G K N
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF 528
Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
+ Y E ++ ++ + +C P +L +G+I Y ++ + + M Q
Sbjct: 529 ISGYIEASEFASADKYVKEMRECGVLPNKVL--CTGLINEYCKKGKVIEACSAYRSMVDQ 586
Query: 351 GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRA-TYDFLVAGYRRAGLSGK 409
G+ A+ +++ F+ D + ++G +Y L+ G+ + G K
Sbjct: 587 GI-LGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645
Query: 410 LDSVINEM 417
S+ +EM
Sbjct: 646 ASSIFDEM 653
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 23/300 (7%)
Query: 63 DIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121
DIF +NS LI L ++ +A+ L ++ LK N + +SG +
Sbjct: 486 DIFCYNS-------LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAF-----ISGYI 533
Query: 122 QNVPFAM--HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
+ FA M G+ P+ + LI G V+ A S + MV + ++
Sbjct: 534 EASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVD-QGILGDA 592
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
KTY ++G VD + + G + +V +Y LI+G K + ++E
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
M+ G+ P++ I +L G C ++++ K L + G N ++ YC+ G
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG--KQGLSFKSA 357
+ E + + P+ ++ L RL+DVE ++ G K+G + +A
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVY-----TTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 43/265 (16%)
Query: 97 LDKM-LKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
LD+M +KG Y +I K ++ A +F M+ +G+ PDS V+ +L+ C
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 156 SGDVVTALSLF-----------------------------------EIMVSSEEY--KPN 178
DV A+++F +M S + KPN
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
TY+ I GN++A + + A V TY SL++G K + ++
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFD 864
Query: 239 EMMSLGIIP-----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
E ++ GI P S+ I + EG+ + + + F K + G K++ + + L+
Sbjct: 865 EAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSG 924
Query: 294 YCELGRVDELEEQLETLTKCNQSPE 318
+ ++G ++ E+ +E + + P+
Sbjct: 925 FAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 108/300 (36%), Gaps = 46/300 (15%)
Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
+V AL L E M+ + P TYD I G + ++ + G S++ TY
Sbjct: 257 NVDGALKLKESMIC-KGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGI-------------------------------- 245
LI G LK R+ D+ EM+S GI
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 246 ---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
IP ++EG C + + + L + I+ +VK C G +D
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435
Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-- 360
++ + P V++ ++ +I+ + + R D + M +QG+ A D+
Sbjct: 436 AYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGI----APDIFC 489
Query: 361 -EMVICSYFRCAAYDRLDLFL-DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
+I + D FL + ++ K TY ++GY A D + EM+
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 1/184 (0%)
Query: 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181
+N+ AM++ + + G KPD ++N+++ A+ +++ M E +P+ T
Sbjct: 244 KNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKM-KEEGVEPDQIT 302
Query: 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
Y+ I G S G V+ + + AG+ + TY SL++G + + EEM
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEME 362
Query: 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301
+ G P+ +L GLC R +D+ + + G K+ N LV+ + G+V
Sbjct: 363 ARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVA 422
Query: 302 ELEE 305
E E
Sbjct: 423 EAYE 426
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K V A +M G +PD+A + SL+ G+ + ALSL E M
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEM- 361
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227
+ PN TY+ + G +D + Y ++G + Y +L+ +K+
Sbjct: 362 EARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
+ V L ++ G + ++ V+ CE GRVDE ++ ++ LT+ + P+ + F
Sbjct: 140 ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNF 199
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 127/331 (38%), Gaps = 49/331 (14%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K +++ A+ +F M G +P+ +N+L+ G A L M+
Sbjct: 191 YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMM 250
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+PN T+ A I F +G + + Y I +V TY SLI+G
Sbjct: 251 K-RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQK- 289
D + + M G P+ I ++ G C ++++ G KI M+QK
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVE-----------DGMKIFYEMSQKG 358
Query: 290 ----------LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339
L++ YC +GR D +E ++ P+ IR Y + L D
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD---------IRTYNV---LLD 406
Query: 340 VEYSVGRMGKQGLSFKSAEDVEMVI------------CSYFRCAAYDRLDLFLDHIKGSY 387
G++ K + F+ EM I C + D DLF
Sbjct: 407 GLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE--DAFDLFCSLFSKGM 464
Query: 388 KLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
K TY +++G+ R GL + DS+ +MK
Sbjct: 465 KPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 6/239 (2%)
Query: 95 WRLDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W L M+K E + + LI KV + A ++ M + PD + SLI
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSV 212
G + A +F +M + Y PN Y I GF V D M +Y + G
Sbjct: 304 CMYGLLDEARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMS-QKGVVA 361
Query: 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
N TY LI G D + +M S P I +L+GLC K+++
Sbjct: 362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421
Query: 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
+++ IN +++ C+LG+V++ + +L P V+ + SG R
Sbjct: 422 EYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 480
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI V A VF M ++ PD +N L+ C+G V AL +FE M
Sbjct: 366 YTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM- 424
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E N TY I G LG V+ + + + G NV TY ++I G +
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLI 484
Query: 231 DSVDRFYEEMMSLGIIPS 248
D +++M G +P+
Sbjct: 485 HEADSLFKKMKEDGFLPN 502
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 11/312 (3%)
Query: 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI-CACLCSGDVVTALSLFEI 168
++ L+++ K+ + +F M+ GI P N ++ C CL S + L ++
Sbjct: 85 DFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKM 144
Query: 169 MVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228
M ++P+ T+ + ++G+ ++ + + GF NV TY +LI K R
Sbjct: 145 M--KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNR 202
Query: 229 DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288
+ + +M + G P++ ++ GLC + L+ ++ + N
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262
Query: 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSDRLDDVEYSVGR 346
L+ + ++G++ E +E + + + P+V + +G+ +Y L D + Y + R
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC-MYGLLDEARQMFYLMER 321
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCA-AYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
G + + +I + + D + +F + + TY L+ GY G
Sbjct: 322 NG----CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVG 377
Query: 406 LSGKLDSVINEM 417
V N+M
Sbjct: 378 RPDVAQEVFNQM 389
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + V M +F M +G+ ++ + LI G A +F M
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM- 389
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
SS P+ +TY+ + G G V+ + +N+ TY +I G K
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKV 449
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
+ + + S G+ P++ ++ G C R + S K + G+ NE++
Sbjct: 450 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESV 505
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 5/264 (1%)
Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
C++ ++ + A+ + M+ QG+ P S N ++ + G + A ++F+ M S
Sbjct: 152 CMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEM-SV 210
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S +Y + G G + ++W I GF + T ++ + +
Sbjct: 211 RGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNR 270
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ +M+ LG P++ +++GLC + + + L+ ++ GWK N L+
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 330
Query: 293 CYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351
C+ G ++ L + + P V H ++ +I Y D+L+ E RM +QG
Sbjct: 331 GLCKRGWTEKAFRLFLKLVRSDTYKPNV--HTYTSMIGGYCKEDKLNRAEMLFSRMKEQG 388
Query: 352 LSFKSAEDVEMVICSYFRCAAYDR 375
L F + +I + + ++ R
Sbjct: 389 L-FPNVNTYTTLINGHCKAGSFGR 411
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 4/208 (1%)
Query: 109 DEYACLIALSGKVQN--VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
D C + L+ +N V A+ F M G KP+ F SLI G + A +
Sbjct: 251 DNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEML 310
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSL 225
E MV + +KPN T+ A I G G + + + + + + NV TY S+I G
Sbjct: 311 EEMVRNG-WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYC 369
Query: 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285
K + + + M G+ P++ ++ G C R + + G+ N
Sbjct: 370 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIY 429
Query: 286 MAQKLVKCYCELGRVDELEEQLETLTKC 313
+ C+ R E E L C
Sbjct: 430 TYNAAIDSLCKKSRAPEAYELLNKAFSC 457
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 1/171 (0%)
Query: 95 WRLDKMLK-GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153
W KM+ G + L + LI K ++ A + M G KP+ +LI
Sbjct: 273 WYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 332
Query: 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213
G A LF +V S+ YKPN TY + I G+ ++ ++ G N
Sbjct: 333 CKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPN 392
Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
V TY +LI+G KA F M G +P+I ++ LC + +
Sbjct: 393 VNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 443
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y +I K + A +F+ M+ QG+ P+ + +LI +G A L +M
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM- 419
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + PN TY+A I + + G + TY LI K D
Sbjct: 420 GDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDI 479
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+ F+ M G + + ++ C ++K+ + + ++ G + +
Sbjct: 480 NQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSM 539
Query: 291 VKCYCELGRVD 301
+ CYC+ G +D
Sbjct: 540 ISCYCKEGDID 550
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 1/177 (0%)
Query: 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179
K P A + + G++ D + LI D+ AL+ F M + ++ +
Sbjct: 440 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRM-NKTGFEADM 498
Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
+ + I+ F + + + ++ G +TY S+I K D D +++
Sbjct: 499 RLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHN 558
Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296
M G +P ++ GLC + +D + ++ G E L YC+
Sbjct: 559 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 615
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 6/164 (3%)
Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-SGDVVTALSLFEIMVSS 172
LIA + + + + +F + + G+ P + S+I +C C GD+ AL F M
Sbjct: 504 LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMI-SCYCKEGDIDLALKYFHNM-KR 561
Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
P+S TY + ISG VD K Y A I G S T +L + K D +
Sbjct: 562 HGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSAN 621
Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
E + I ++ L + LC+ +K+ F + LL
Sbjct: 622 AMILLEPLDKKLWIRTVRTL---VRKLCSEKKVGVAALFFQKLL 662
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV-TALSLFE 167
+ Y +I+ K ++ A+ F +M+ G PDS + SLI LC +V A L+E
Sbjct: 534 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISG-LCKKSMVDEACKLYE 592
Query: 168 IMV 170
M+
Sbjct: 593 AMI 595
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185
FA V + G +PD+ FN+LI G V A+ L + MV + +P+ TY++
Sbjct: 141 FAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSI 199
Query: 186 ISGFSSLGN----VDAMNKWYAANIAA-------------------------------GF 210
++G G+ +D + K N+ A G
Sbjct: 200 VNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 259
Query: 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270
+V TY SL+ G KA ++ ++M+S I+P++ +L+ KL
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
K ++ G N L+ YC R+ E L+ + + SP+++ F+ +I+
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT--FTSLIKG 377
Query: 331 YALSDRLDDVEYSVGRMGKQGL 352
Y + R+DD + K+GL
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGL 399
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ +F ME +GIK +NSL+ +G L + MVS E PN T++ +
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLL 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
F G + N+ Y I G S N+ TY +L+ G + + M+
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
P I +++G C +++D + + G N LV+ +C+ G++ EE
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 307 LETLTKCNQSPEVLLH 322
+ + P+V+ +
Sbjct: 426 FQEMVSHGVLPDVMTY 441
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
GK+Q A ++ M +GI P+ +N+L+ + A ++ ++MV ++ P+
Sbjct: 312 GKLQE---ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T+ + I G+ + VD K + G N TY L+ G ++ + ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
EM+S G++P + +L+GLC KL++ + L + M +++ C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 299 RVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYALSD 335
+V++ +L P V+ + SG+ + +LS+
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GK++ A+ +F ++ + ++ ++I G V A +LF + + KP
Sbjct: 451 NGKLEK---ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF-CSLPCKGVKP 506
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N TY ISG G++ N G + N TY +LI L+ D + +
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLI 566
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
EEM S G ++ V++ L + +LD KSFL L
Sbjct: 567 EEMKSCGFSADASSIKMVIDMLLS-GELD--KSFLDML 601
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 1/175 (0%)
Query: 103 GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162
G E + Y L + + A F M ++G++P +N ++ S + TA
Sbjct: 215 GVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETA 274
Query: 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222
L FE M + P+ T++ I+GF +D K + +V +Y ++I
Sbjct: 275 LRFFEDM-KTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIK 333
Query: 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
G L D R +EEM S GI P+ +L GLC K+ K+ LK ++
Sbjct: 334 GYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 1/222 (0%)
Query: 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156
LD KG D + LI GK V ++ +F M+ G++ +NSL L
Sbjct: 174 LDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRR 233
Query: 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216
G + A F MV SE +P TY+ + GF ++ +++ G S + T
Sbjct: 234 GRYMMAKRYFNKMV-SEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDAT 292
Query: 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276
+ ++I+G + + D ++ + EM I PS+ +++G A ++D + +
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMR 352
Query: 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
G + N L+ C+ G++ E + L+ + + +P+
Sbjct: 353 SSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPK 394
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 3/227 (1%)
Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
A+ + M+++G+ D +N LI LC + + L + PN TY+ I
Sbjct: 247 AIELLDHMKSKGVDADVCTYNMLIHD-LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
+GFS+ G V ++ ++ G S N T+ +LI G + +F + + M + G+
Sbjct: 306 NGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLT 365
Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
PS +L+GLC + D + F + G + ++ C+ G +DE
Sbjct: 366 PSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Query: 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
L ++K P+++ +S +I + R + V R+ + GLS
Sbjct: 426 LNEMSKDGIDPDIVT--YSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%)
Query: 59 LDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
LD + ++ +++ LI L +S+ K L+L +M+ NE Y LI
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---TYNTLING 307
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
V A + M + G+ P+ FN+LI + G+ AL +F M+ ++ P
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTP 366
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
+ +Y + G D +Y G V TY +I G K D
Sbjct: 367 SEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLL 426
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
EM GI P I ++ G C + K + + G N + L+ C +
Sbjct: 427 NEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRM 486
Query: 298 GRVDE 302
G + E
Sbjct: 487 GCLKE 491
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 1/190 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y+ LI KV A + + G+ P+ ++++LI C G + A+ ++E M+
Sbjct: 441 YSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMI 500
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E + + T++ ++ G V ++ + G N +++ LI+G + +
Sbjct: 501 L-EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++EM +G P+ +L+GLC L + FLK L ++ M L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619
Query: 291 VKCYCELGRV 300
+ C+ G +
Sbjct: 620 LTAMCKSGNL 629
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 37/288 (12%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL------- 163
Y L+ K N+ A+ +F M + I PDS + SLI G V A+
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 164 -------------SLFEIMVSSEEYK---------------PNSKTYDAFISGFSSLGNV 195
+ M + ++K P+ T +A I G+S +G +
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735
Query: 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255
+ N N+ TY L+HG K +D + Y ++ GI+P +
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795
Query: 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315
+ G+C L+ LK + G +++ L+ C G ++ + ++ +T
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855
Query: 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363
S + ++ + + R + + M KQG+S +S + + ++
Sbjct: 856 SLDK--DTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLI 901
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
+GKV M TS GI P++ F+ LI SG+ + A S+F+ M + P
Sbjct: 521 AGKVAEAEEFMRCMTS---DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH-P 576
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
TY + + G G++ K+ + A +V+ Y +L+ K+ + +
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRK 264
EM+ I+P ++ GLC + K
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGK 663
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
P A F +L+ C +G+V+ AL L +++S+ K + +Y+ I+G + G++ +
Sbjct: 962 PTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFE 1020
Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARD--FDSVDRFYEEMMSLGIIPSIPI 251
Y GF N TY++LI G L AR+ F D +++++ G I S+ +
Sbjct: 1021 LYEEMKGDGFLANATTYKALIRGLL-ARETAFSGADIILKDLLARGFITSMSL 1072
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 7/255 (2%)
Query: 65 FAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124
F + + +++ALI S K L + + ++ KG Y L L G +N
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEA--KGLTPSEVSYGVL--LDGLCKNA 382
Query: 125 PF--AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
F A + M+ G+ + +I +G + A+ L M S + P+ TY
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM-SKDGIDPDIVTY 441
Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
A I+GF +G + G S N Y +LI+ + R YE M+
Sbjct: 442 SALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMIL 501
Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
G ++ LC K+ + F++ + G N L+ Y G +
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 303 LEEQLETLTKCNQSP 317
+ +TK P
Sbjct: 562 AFSVFDEMTKVGHHP 576
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
G +Q+ ++ +F M G P N+++ + + SG+ V+ S + M+ + P+
Sbjct: 137 GMIQD---SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLK-RKICPD 192
Query: 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
T++ I+ + G+ + + +G++ + TY +++H K F + +
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298
M S G+ + ++ LC ++ + L+ + NE L+ + G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 299 RVDELEEQLETLTKCNQSP 317
+V + L + SP
Sbjct: 313 KVLIASQLLNEMLSFGLSP 331
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 1/163 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V M QGI P+S + LI GD+ TA + E M++ + PN A +
Sbjct: 881 VLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRAL 939
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
+ G D + + ++ +L+H K + M + G+ +
Sbjct: 940 AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999
Query: 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
++ GLCA+ + + + G G+ N + L++
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIR 1042
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 55/133 (41%)
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N YD I + G + + + GF+ +V T +++ +K+ + SV F
Sbjct: 122 NPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFL 181
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
+EM+ I P + ++ LCA ++ ++ + G+ ++ YC+
Sbjct: 182 KEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKK 241
Query: 298 GRVDELEEQLETL 310
GR E L+ +
Sbjct: 242 GRFKAAIELLDHM 254
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 82/192 (42%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y L+ K N+ A V+ M +GIKPD + + L GD A L E MV
Sbjct: 447 YTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMV 506
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+++ + P+ Y+ I G +GN+ ++ G + TY ++I G L+ F
Sbjct: 507 ATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQF 566
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
Y+EM+ + PS+ ++ G +L++ + + G + N L
Sbjct: 567 KMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNAL 626
Query: 291 VKCYCELGRVDE 302
+ C+ G +DE
Sbjct: 627 LYGMCKAGNIDE 638
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
V+ +M GI P FN+++ +C +GD+ ++ + + + + TY+ I+GF
Sbjct: 225 VYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIW-LEMKRRNIEFSEVTYNILINGF 283
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
S G ++ +++ +GF+V ++ LI G K FD +EM++ GI P+
Sbjct: 284 SKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTT 343
Query: 250 PILEKVLEGLCARRKLDRVKSFL 272
+ LC ++D + L
Sbjct: 344 STYNIYICALCDFGRIDDARELL 366
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 4/224 (1%)
Query: 130 VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
+F + A I P +N+LI SG++ A L E M + + P+ TY + GF
Sbjct: 396 LFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF-PDVITYTTLVKGF 454
Query: 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPS 248
GN+ + Y + G + Y + G L+ D D R +EEM++ P
Sbjct: 455 VKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPD 514
Query: 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
+ I ++GLC L + F + + G + +++ Y E G+ +
Sbjct: 515 LTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYD 574
Query: 309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
+ + P V+ +F +I +A + RL+ M K+G+
Sbjct: 575 EMLRKRLYPSVITYFV--LIYGHAKAGRLEQAFQYSTEMKKRGV 616
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 16/181 (8%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI K + A M G FN LI G A + + M+
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
++ Y P + TY+ +I G +D + ++ A +V +Y +L+HG +K F
Sbjct: 336 NAGIY-PTTSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKF 390
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
++++ + I PSI +++GLC L+ G ++ E M +L
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLE-----------GAQRLKEEMTTQL 439
Query: 291 V 291
+
Sbjct: 440 I 440
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 2/211 (0%)
Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
F M +G P N ++ S + A +++E M+ P T++ +
Sbjct: 191 FEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIE-HGIMPTVITFNTMLDSCF 249
Query: 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250
G+++ ++K + + TY LI+G K + RF+ +M G +
Sbjct: 250 KAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPY 309
Query: 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310
++EG C + D +L G + + C+ GR+D+ E L ++
Sbjct: 310 SFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM 369
Query: 311 TKCN-QSPEVLLHFFSGIIRLYALSDRLDDV 340
+ S L+H + + + S DD+
Sbjct: 370 AAPDVVSYNTLMHGYIKMGKFVEASLLFDDL 400
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LIA + + A+ + M G++P+ FN+LI + + A +F M
Sbjct: 276 YNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEM- 334
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
+ PN+ TY+ I+G+S G+ + ++Y + G ++ TY +LI G K
Sbjct: 335 KAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT 394
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
+F +E+ ++P+ ++ G C R+ DR K ++ G NE L
Sbjct: 395 RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNML 454
Query: 291 VKCYCELGRVDELEEQLETLTK 312
V +C D + L + +
Sbjct: 455 VSAFCRNEDFDGASQVLREMVR 476
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
SGK+ + + ME G + +N+LI G + +AL L +M S +P
Sbjct: 251 SGKLDK---GIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSG-LQP 306
Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
N T++ I GF + +K + A + N TY +LI+G + D + RFY
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275
E+M+ GI I ++ GLC + K + F+K L
Sbjct: 367 EDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKEL 404
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
Y LI + + A + M GI+ D +N+LI LC + F +
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFG-LCKQAKTRKAAQFVKEL 404
Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
E PNS T+ A I G N D + Y + I +G N QT+ L+ + DF
Sbjct: 405 DKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDF 464
Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
D + EM+ I + +V GL + K VK L+ + G
Sbjct: 465 DGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEG 511
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 3/201 (1%)
Query: 148 SLICACLCSGDVVTALSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206
S++ L +G V +F+ ++ S E + +D+ F+ L +
Sbjct: 136 SILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMK 195
Query: 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266
GF V++ + + L D RFY EM I P+ L V+ G C KLD
Sbjct: 196 DYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLD 255
Query: 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326
+ L+ + G++ + L+ +CE G + + + K P V+ F+
Sbjct: 256 KGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVT--FNT 313
Query: 327 IIRLYALSDRLDDVEYSVGRM 347
+I + + +L + G M
Sbjct: 314 LIHGFCRAMKLQEASKVFGEM 334
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 132/314 (42%), Gaps = 10/314 (3%)
Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS----LF 166
Y+ LI++ GK AM +F+ M+ G +PD++V+N+LI A L + D AL
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYL 195
Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
+ M E +PN TY+ + F+ G VD +N + + S +V T+ ++ K
Sbjct: 196 DKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGK 255
Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286
++ M S P I +++ +++ ++++ K L+ K
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346
++ Y + +D+ E + + N P + + +I +Y +
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT--YECMIMMYGYCGSVSRAREIFEE 373
Query: 347 MGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRA 404
+G+ K A + ++ Y R Y D H ++++ +TY FL Y +A
Sbjct: 374 VGESDRVLK-ASTLNAMLEVYCRNGLYIEADKLF-HNASAFRVHPDASTYKFLYKAYTKA 431
Query: 405 GLSGKLDSVINEMK 418
+ ++ ++ +M+
Sbjct: 432 DMKEQVQILMKKME 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,930,912
Number of Sequences: 539616
Number of extensions: 5695475
Number of successful extensions: 17835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 14527
Number of HSP's gapped (non-prelim): 1894
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)