Query 014502
Match_columns 423
No_of_seqs 489 out of 3107
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.6E-61 1.2E-65 478.5 49.1 383 34-423 434-844 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3E-60 6.4E-65 473.3 49.8 381 35-423 368-786 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-55 2.6E-60 436.8 38.1 367 33-418 119-489 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-54 3.2E-59 429.1 39.7 373 31-423 152-560 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.4E-54 9.6E-59 435.3 39.6 374 31-417 146-651 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5.6E-54 1.2E-58 434.6 38.1 373 31-422 115-621 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 3E-22 6.4E-27 206.5 45.4 321 81-419 578-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.1E-21 1.1E-25 197.3 46.3 303 106-421 565-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.7E-21 1.2E-25 177.8 35.7 299 80-392 45-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.1E-21 1.5E-25 177.2 35.5 306 106-422 33-349 (389)
11 PRK15174 Vi polysaccharide exp 99.9 6.5E-18 1.4E-22 165.4 41.0 322 81-419 53-380 (656)
12 PRK15174 Vi polysaccharide exp 99.9 4.2E-17 9E-22 159.8 42.6 328 43-385 48-381 (656)
13 KOG4422 Uncharacterized conser 99.8 5.2E-16 1.1E-20 134.5 35.9 372 39-421 118-552 (625)
14 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-15 6.4E-20 147.1 44.6 352 53-419 144-570 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 5.4E-17 1.2E-21 146.6 29.2 331 71-419 116-484 (966)
16 PRK11447 cellulose synthase su 99.8 4.3E-15 9.3E-20 155.4 44.9 326 81-419 280-699 (1157)
17 PRK11447 cellulose synthase su 99.8 6.7E-15 1.5E-19 153.9 43.1 320 81-418 362-738 (1157)
18 KOG4626 O-linked N-acetylgluco 99.8 5.2E-16 1.1E-20 140.4 27.7 356 43-417 54-448 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-14 1.1E-18 138.4 42.7 325 81-419 138-536 (615)
20 PRK10049 pgaA outer membrane p 99.8 9.1E-14 2E-18 139.2 45.2 334 74-420 52-456 (765)
21 PRK14574 hmsH outer membrane p 99.7 3.5E-13 7.6E-18 133.0 43.8 196 221-418 299-511 (822)
22 KOG4422 Uncharacterized conser 99.7 5.2E-13 1.1E-17 116.2 35.4 340 68-420 204-590 (625)
23 PRK10049 pgaA outer membrane p 99.7 8.5E-13 1.8E-17 132.3 42.6 334 75-419 19-421 (765)
24 PRK09782 bacteriophage N4 rece 99.7 1.2E-12 2.5E-17 132.0 41.1 259 142-416 476-736 (987)
25 PRK10747 putative protoheme IX 99.7 4.6E-13 1E-17 124.0 33.9 281 121-418 97-388 (398)
26 PRK09782 bacteriophage N4 rece 99.6 7.3E-12 1.6E-16 126.3 40.2 321 82-419 354-705 (987)
27 PRK14574 hmsH outer membrane p 99.6 1.9E-11 4E-16 121.0 41.5 366 40-418 38-477 (822)
28 TIGR00540 hemY_coli hemY prote 99.6 3.6E-12 7.8E-17 118.7 33.7 287 120-417 96-396 (409)
29 PF13429 TPR_15: Tetratricopep 99.6 5.9E-15 1.3E-19 130.5 12.6 252 81-347 19-274 (280)
30 PF13429 TPR_15: Tetratricopep 99.6 6.1E-15 1.3E-19 130.4 11.4 249 114-373 14-264 (280)
31 PRK10747 putative protoheme IX 99.6 5.3E-11 1.1E-15 110.3 35.4 291 74-384 85-389 (398)
32 COG2956 Predicted N-acetylgluc 99.6 3.5E-11 7.6E-16 101.3 30.0 290 121-420 48-347 (389)
33 TIGR00540 hemY_coli hemY prote 99.6 6.4E-11 1.4E-15 110.3 33.9 295 73-382 84-396 (409)
34 COG3071 HemY Uncharacterized e 99.5 1E-10 2.3E-15 101.4 32.1 285 121-418 97-388 (400)
35 KOG2076 RNA polymerase III tra 99.5 1.3E-10 2.8E-15 110.4 34.9 328 81-418 150-510 (895)
36 KOG2076 RNA polymerase III tra 99.5 5.9E-10 1.3E-14 106.0 36.5 362 47-421 150-556 (895)
37 COG2956 Predicted N-acetylgluc 99.5 3.9E-10 8.5E-15 95.1 30.8 297 72-385 37-347 (389)
38 KOG1126 DNA-binding cell divis 99.5 2.1E-11 4.5E-16 112.1 23.4 279 85-384 334-619 (638)
39 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.7E-18 85.9 6.7 49 212-260 1-49 (50)
40 KOG1155 Anaphase-promoting com 99.5 2E-10 4.3E-15 101.4 27.6 247 116-373 235-482 (559)
41 KOG1126 DNA-binding cell divis 99.5 5.3E-11 1.1E-15 109.5 25.0 282 123-419 334-619 (638)
42 PRK12370 invasion protein regu 99.5 3.2E-10 7E-15 109.7 31.2 148 159-311 320-468 (553)
43 KOG2003 TPR repeat-containing 99.5 2.9E-10 6.2E-15 100.1 27.6 327 82-419 249-688 (840)
44 PF13041 PPR_2: PPR repeat fam 99.4 3.5E-13 7.6E-18 84.5 6.6 49 177-225 1-49 (50)
45 KOG1155 Anaphase-promoting com 99.4 6.8E-10 1.5E-14 98.1 28.8 302 85-405 242-554 (559)
46 COG3071 HemY Uncharacterized e 99.4 3.7E-09 7.9E-14 92.0 32.5 286 81-384 95-389 (400)
47 TIGR02521 type_IV_pilW type IV 99.4 3.2E-10 7E-15 97.3 26.2 200 108-312 31-231 (234)
48 TIGR02521 type_IV_pilW type IV 99.4 4.5E-10 9.8E-15 96.4 26.4 201 142-349 30-231 (234)
49 PRK12370 invasion protein regu 99.4 8E-10 1.7E-14 107.0 30.1 265 69-351 254-536 (553)
50 KOG2002 TPR-containing nuclear 99.4 4.6E-09 9.9E-14 100.9 33.3 294 81-383 424-743 (1018)
51 KOG0495 HAT repeat protein [RN 99.4 1.6E-07 3.6E-12 86.8 40.8 363 43-417 412-779 (913)
52 KOG2002 TPR-containing nuclear 99.4 1.1E-08 2.3E-13 98.4 33.8 368 39-419 272-744 (1018)
53 KOG4318 Bicoid mRNA stability 99.3 4.7E-10 1E-14 106.3 23.2 82 31-126 19-101 (1088)
54 KOG4318 Bicoid mRNA stability 99.3 1.9E-10 4E-15 109.0 18.0 251 97-372 13-286 (1088)
55 KOG1129 TPR repeat-containing 99.3 8.1E-10 1.8E-14 93.4 18.5 227 112-348 227-456 (478)
56 KOG1840 Kinesin light chain [C 99.3 4.4E-09 9.5E-14 97.7 24.2 240 109-348 200-477 (508)
57 KOG1129 TPR repeat-containing 99.2 1.4E-09 3E-14 92.0 18.6 229 146-383 226-455 (478)
58 KOG0495 HAT repeat protein [RN 99.2 8.2E-07 1.8E-11 82.3 35.8 295 107-419 549-845 (913)
59 KOG1915 Cell cycle control pro 99.2 2E-06 4.3E-11 76.9 36.9 200 213-420 321-536 (677)
60 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.9E-12 89.0 31.2 255 81-352 15-293 (517)
61 KOG2003 TPR repeat-containing 99.2 6.8E-08 1.5E-12 85.5 26.3 279 81-375 430-712 (840)
62 KOG1840 Kinesin light chain [C 99.2 1.1E-07 2.5E-12 88.4 28.2 28 391-418 450-477 (508)
63 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.3E-12 77.1 23.0 191 81-278 46-236 (250)
64 PRK11189 lipoprotein NlpI; Pro 99.1 2.3E-07 5E-12 82.5 27.2 196 108-314 64-266 (296)
65 KOG1173 Anaphase-promoting com 99.1 4E-07 8.8E-12 82.9 28.4 283 107-402 243-533 (611)
66 PRK11189 lipoprotein NlpI; Pro 99.1 2E-07 4.4E-12 82.8 26.4 224 118-351 36-266 (296)
67 COG3063 PilF Tfp pilus assembl 99.1 2.1E-07 4.6E-12 75.4 23.3 200 181-387 37-237 (250)
68 PF12569 NARP1: NMDA receptor- 99.1 3.9E-07 8.5E-12 85.9 28.6 260 113-386 9-292 (517)
69 KOG0547 Translocase of outer m 99.1 1.2E-06 2.5E-11 78.7 29.5 192 217-417 363-563 (606)
70 cd05804 StaR_like StaR_like; a 99.0 5.1E-06 1.1E-10 76.4 34.0 155 117-277 52-214 (355)
71 KOG0547 Translocase of outer m 99.0 2.1E-06 4.5E-11 77.1 28.6 237 117-370 335-580 (606)
72 cd05804 StaR_like StaR_like; a 99.0 2.9E-06 6.2E-11 78.0 31.5 261 81-349 54-335 (355)
73 KOG4340 Uncharacterized conser 99.0 3.7E-07 8E-12 76.7 22.1 326 73-418 12-373 (459)
74 KOG1173 Anaphase-promoting com 99.0 7.4E-07 1.6E-11 81.3 25.2 266 141-418 242-516 (611)
75 KOG1174 Anaphase-promoting com 99.0 1E-05 2.2E-10 71.3 30.7 31 106-136 230-260 (564)
76 KOG4162 Predicted calmodulin-b 98.9 3E-05 6.5E-10 73.6 35.1 126 287-418 653-781 (799)
77 KOG1915 Cell cycle control pro 98.9 3.2E-05 6.8E-10 69.5 32.8 324 81-419 84-465 (677)
78 PF04733 Coatomer_E: Coatomer 98.9 9.7E-08 2.1E-12 83.7 16.7 242 120-381 13-260 (290)
79 PF12854 PPR_1: PPR repeat 98.9 2.3E-09 5E-14 60.3 4.0 32 209-240 2-33 (34)
80 KOG1156 N-terminal acetyltrans 98.9 7.1E-05 1.5E-09 69.8 35.1 334 70-421 74-469 (700)
81 KOG1174 Anaphase-promoting com 98.9 1.9E-05 4.1E-10 69.7 29.1 278 66-360 226-508 (564)
82 PF12854 PPR_1: PPR repeat 98.9 3.9E-09 8.3E-14 59.4 4.1 32 138-169 2-33 (34)
83 KOG1156 N-terminal acetyltrans 98.8 4.5E-05 9.7E-10 71.1 31.8 221 81-312 52-282 (700)
84 KOG2376 Signal recognition par 98.8 0.0001 2.3E-09 68.0 32.6 360 41-419 13-486 (652)
85 KOG1070 rRNA processing protei 98.8 6E-06 1.3E-10 82.9 26.4 246 125-379 1442-1693(1710)
86 KOG2047 mRNA splicing factor [ 98.8 0.00011 2.5E-09 68.5 32.7 302 108-417 248-612 (835)
87 KOG1070 rRNA processing protei 98.8 1.1E-05 2.4E-10 81.1 27.3 239 97-344 1447-1694(1710)
88 PF04733 Coatomer_E: Coatomer 98.8 9.8E-07 2.1E-11 77.5 18.4 253 150-419 8-264 (290)
89 KOG0624 dsRNA-activated protei 98.7 0.00011 2.5E-09 63.4 29.4 304 63-381 29-366 (504)
90 KOG1914 mRNA cleavage and poly 98.7 0.00027 5.8E-09 64.8 34.2 150 265-419 347-500 (656)
91 KOG1128 Uncharacterized conser 98.6 4.4E-06 9.5E-11 78.6 18.8 233 112-369 402-635 (777)
92 KOG3617 WD40 and TPR repeat-co 98.6 9.5E-06 2.1E-10 77.4 20.4 294 70-413 725-1057(1416)
93 KOG0985 Vesicle coat protein c 98.6 0.00029 6.2E-09 69.2 30.5 199 181-416 1106-1304(1666)
94 KOG3785 Uncharacterized conser 98.6 0.00025 5.4E-09 61.6 26.8 154 73-243 58-214 (557)
95 PRK04841 transcriptional regul 98.6 0.00045 9.7E-09 72.0 34.9 307 112-419 413-759 (903)
96 KOG1128 Uncharacterized conser 98.6 1.1E-05 2.4E-10 76.0 20.3 238 140-402 395-634 (777)
97 PLN02789 farnesyltranstransfer 98.6 0.0002 4.3E-09 63.9 27.4 205 82-296 49-267 (320)
98 TIGR03302 OM_YfiO outer membra 98.6 1.8E-05 4E-10 68.0 20.6 59 290-349 172-231 (235)
99 KOG1125 TPR repeat-containing 98.6 7.6E-05 1.7E-09 68.8 24.8 253 152-414 294-565 (579)
100 COG5010 TadD Flp pilus assembl 98.6 3E-05 6.5E-10 64.5 20.2 164 107-276 66-229 (257)
101 PLN02789 farnesyltranstransfer 98.6 0.00028 6E-09 63.0 28.1 213 111-333 40-267 (320)
102 TIGR03302 OM_YfiO outer membra 98.6 2E-05 4.4E-10 67.8 20.6 54 326-379 171-226 (235)
103 KOG2047 mRNA splicing factor [ 98.6 0.00077 1.7E-08 63.2 33.6 293 109-407 388-710 (835)
104 KOG4162 Predicted calmodulin-b 98.5 0.00012 2.6E-09 69.7 25.8 283 87-384 461-782 (799)
105 KOG1125 TPR repeat-containing 98.5 3.1E-05 6.7E-10 71.2 21.2 256 106-374 286-559 (579)
106 PRK04841 transcriptional regul 98.5 0.00033 7.1E-09 73.0 31.7 302 118-419 384-719 (903)
107 KOG4340 Uncharacterized conser 98.5 0.00016 3.4E-09 61.3 22.6 184 120-310 124-336 (459)
108 KOG3081 Vesicle coat complex C 98.5 0.00042 9.2E-09 57.9 24.6 117 187-313 116-236 (299)
109 KOG0548 Molecular co-chaperone 98.5 0.001 2.2E-08 61.1 29.5 353 54-419 20-454 (539)
110 PRK15179 Vi polysaccharide bio 98.5 0.0001 2.2E-09 72.6 24.3 161 139-311 82-243 (694)
111 PRK14720 transcript cleavage f 98.4 0.00014 3.1E-09 72.4 24.8 154 178-368 115-268 (906)
112 PRK10370 formate-dependent nit 98.4 9.1E-05 2E-09 61.4 20.3 118 227-349 52-172 (198)
113 COG5010 TadD Flp pilus assembl 98.4 0.00015 3.2E-09 60.5 21.0 157 184-346 71-227 (257)
114 PRK15359 type III secretion sy 98.4 4.4E-05 9.6E-10 59.8 16.8 108 129-243 14-121 (144)
115 PRK15179 Vi polysaccharide bio 98.4 0.00027 5.8E-09 69.7 25.7 145 104-255 82-228 (694)
116 KOG3616 Selective LIM binding 98.4 6.1E-05 1.3E-09 71.2 20.0 160 188-375 741-900 (1636)
117 TIGR00756 PPR pentatricopeptid 98.4 5.3E-07 1.2E-11 51.4 4.3 33 216-248 2-34 (35)
118 KOG2376 Signal recognition par 98.4 0.002 4.4E-08 59.9 30.6 321 81-416 90-516 (652)
119 PRK10370 formate-dependent nit 98.4 4.8E-05 1E-09 63.1 16.6 120 121-244 52-174 (198)
120 PRK15359 type III secretion sy 98.3 3.2E-05 7E-10 60.6 14.4 100 255-360 30-129 (144)
121 PF13812 PPR_3: Pentatricopept 98.3 9.2E-07 2E-11 50.1 4.2 33 215-247 2-34 (34)
122 COG4783 Putative Zn-dependent 98.3 0.00098 2.1E-08 60.6 24.9 234 45-313 210-454 (484)
123 PRK14720 transcript cleavage f 98.3 0.00048 1E-08 68.8 25.1 223 66-332 25-268 (906)
124 COG4783 Putative Zn-dependent 98.3 0.00052 1.1E-08 62.3 22.5 123 71-201 307-430 (484)
125 KOG3081 Vesicle coat complex C 98.3 0.00057 1.2E-08 57.2 20.9 197 106-314 70-272 (299)
126 PF10037 MRP-S27: Mitochondria 98.3 1.9E-05 4E-10 72.2 13.3 121 106-227 64-186 (429)
127 TIGR00756 PPR pentatricopeptid 98.3 1.7E-06 3.7E-11 49.3 4.1 33 181-213 2-34 (35)
128 KOG3785 Uncharacterized conser 98.2 0.0026 5.7E-08 55.5 26.0 146 266-419 340-489 (557)
129 PF10037 MRP-S27: Mitochondria 98.2 1.7E-05 3.7E-10 72.5 12.3 126 137-262 60-186 (429)
130 KOG0985 Vesicle coat protein c 98.2 0.007 1.5E-07 60.0 31.7 203 107-342 983-1187(1666)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.4E-05 1.4E-09 68.4 15.6 123 112-241 173-295 (395)
132 PF13812 PPR_3: Pentatricopept 98.2 3E-06 6.5E-11 47.9 4.3 32 181-212 3-34 (34)
133 KOG0624 dsRNA-activated protei 98.2 0.0034 7.4E-08 54.6 30.0 299 108-419 38-369 (504)
134 TIGR02552 LcrH_SycD type III s 98.2 0.00011 2.4E-09 56.9 14.5 104 102-208 11-114 (135)
135 KOG3060 Uncharacterized conser 98.2 0.0027 5.8E-08 52.9 23.6 187 121-312 25-219 (289)
136 TIGR02552 LcrH_SycD type III s 98.2 0.00017 3.6E-09 56.0 15.2 91 220-312 23-113 (135)
137 PF08579 RPM2: Mitochondrial r 98.2 4E-05 8.7E-10 55.1 10.1 72 188-259 34-114 (120)
138 PF09976 TPR_21: Tetratricopep 98.1 0.00023 4.9E-09 56.0 15.5 85 151-238 56-142 (145)
139 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0019 4.1E-08 57.6 22.3 110 216-347 179-288 (319)
140 PF01535 PPR: PPR repeat; Int 98.1 3E-06 6.5E-11 46.7 3.1 31 392-422 1-31 (31)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00029 6.2E-09 64.3 17.4 119 149-275 175-294 (395)
142 KOG1127 TPR repeat-containing 98.1 0.0018 4E-08 63.7 23.2 156 81-242 469-624 (1238)
143 KOG1914 mRNA cleavage and poly 98.1 0.0014 3E-08 60.3 20.8 153 195-349 347-500 (656)
144 KOG0548 Molecular co-chaperone 98.1 0.0025 5.4E-08 58.6 22.4 319 81-413 13-414 (539)
145 PF08579 RPM2: Mitochondrial r 98.1 7.6E-05 1.6E-09 53.7 10.3 81 216-296 27-116 (120)
146 PF01535 PPR: PPR repeat; Int 98.1 4.5E-06 9.8E-11 46.0 3.4 29 216-244 2-30 (31)
147 KOG3617 WD40 and TPR repeat-co 98.1 0.0045 9.7E-08 60.0 24.7 24 392-415 1146-1169(1416)
148 KOG3616 Selective LIM binding 98.1 0.00083 1.8E-08 63.9 19.7 112 221-347 739-850 (1636)
149 KOG2053 Mitochondrial inherita 98.1 0.014 3.1E-07 57.1 29.5 73 120-196 55-127 (932)
150 PF09976 TPR_21: Tetratricopep 98.0 0.00093 2E-08 52.5 16.5 20 223-242 57-76 (145)
151 KOG2053 Mitochondrial inherita 97.9 0.028 6E-07 55.2 35.0 224 45-279 18-256 (932)
152 PF05843 Suf: Suppressor of fo 97.9 0.00038 8.3E-09 61.2 13.6 130 180-312 2-135 (280)
153 PF06239 ECSIT: Evolutionarily 97.8 0.00071 1.5E-08 55.1 12.9 103 142-264 46-153 (228)
154 PF06239 ECSIT: Evolutionarily 97.8 0.00018 3.9E-09 58.5 9.4 105 176-299 44-153 (228)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0014 3.1E-08 49.2 13.4 59 289-349 44-104 (119)
156 cd00189 TPR Tetratricopeptide 97.7 0.00093 2E-08 47.4 11.7 11 157-167 14-24 (100)
157 cd00189 TPR Tetratricopeptide 97.7 0.00095 2.1E-08 47.4 11.7 56 254-310 39-94 (100)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.002 4.2E-08 48.5 13.7 97 112-208 6-105 (119)
159 PF14938 SNAP: Soluble NSF att 97.7 0.014 3E-07 51.6 20.5 93 258-350 123-225 (282)
160 KOG0550 Molecular chaperone (D 97.7 0.037 8.1E-07 49.6 22.4 188 177-372 166-372 (486)
161 CHL00033 ycf3 photosystem I as 97.6 0.002 4.3E-08 52.1 13.1 62 181-242 37-100 (168)
162 PRK02603 photosystem I assembl 97.6 0.0056 1.2E-07 49.7 15.7 61 182-242 38-100 (172)
163 PF05843 Suf: Suppressor of fo 97.6 0.0014 3E-08 57.7 12.8 128 110-242 3-135 (280)
164 KOG3060 Uncharacterized conser 97.6 0.031 6.6E-07 46.8 27.0 193 81-278 23-220 (289)
165 PF12895 Apc3: Anaphase-promot 97.6 0.00015 3.3E-09 50.8 5.1 17 150-166 32-48 (84)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00021 4.6E-09 50.1 5.7 20 255-274 31-50 (84)
167 PF14938 SNAP: Soluble NSF att 97.5 0.048 1E-06 48.2 21.7 134 183-332 98-246 (282)
168 CHL00033 ycf3 photosystem I as 97.5 0.0027 5.8E-08 51.3 12.7 80 287-368 38-117 (168)
169 PRK02603 photosystem I assembl 97.5 0.013 2.8E-07 47.5 16.6 91 107-199 34-126 (172)
170 PLN03088 SGT1, suppressor of 97.5 0.0038 8.2E-08 57.1 14.3 102 150-256 9-110 (356)
171 PRK10866 outer membrane biogen 97.5 0.055 1.2E-06 46.5 22.4 179 73-275 35-238 (243)
172 PF04840 Vps16_C: Vps16, C-ter 97.4 0.077 1.7E-06 47.4 24.5 106 287-414 180-285 (319)
173 PLN03088 SGT1, suppressor of 97.4 0.0051 1.1E-07 56.2 14.5 98 81-186 13-110 (356)
174 PRK10153 DNA-binding transcrip 97.4 0.021 4.6E-07 54.7 19.1 64 178-243 419-482 (517)
175 PF07079 DUF1347: Protein of u 97.4 0.091 2E-06 47.8 33.2 369 40-419 49-523 (549)
176 KOG2280 Vacuolar assembly/sort 97.4 0.098 2.1E-06 50.6 21.9 241 71-346 507-795 (829)
177 PRK15363 pathogenicity island 97.4 0.026 5.7E-07 44.0 15.2 87 224-312 45-131 (157)
178 PRK10866 outer membrane biogen 97.3 0.082 1.8E-06 45.4 21.1 177 149-347 38-238 (243)
179 PRK15363 pathogenicity island 97.3 0.01 2.2E-07 46.2 12.8 88 188-277 44-131 (157)
180 PF12688 TPR_5: Tetratrico pep 97.3 0.018 4E-07 43.1 13.7 90 258-347 10-101 (120)
181 KOG0553 TPR repeat-containing 97.3 0.0041 8.9E-08 53.2 11.2 93 224-321 91-184 (304)
182 PRK10153 DNA-binding transcrip 97.3 0.032 6.8E-07 53.6 18.4 144 137-287 331-489 (517)
183 PF12921 ATP13: Mitochondrial 97.3 0.0044 9.6E-08 46.9 10.1 84 107-190 1-99 (126)
184 PF12688 TPR_5: Tetratrico pep 97.2 0.025 5.4E-07 42.3 13.6 104 115-225 8-117 (120)
185 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3E-08 43.7 6.4 49 192-241 4-52 (68)
186 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.14 3.1E-06 46.6 19.2 153 213-371 396-549 (660)
187 PF14559 TPR_19: Tetratricopep 97.1 0.0016 3.5E-08 43.4 5.8 62 120-185 3-64 (68)
188 PF13432 TPR_16: Tetratricopep 97.1 0.0033 7.1E-08 41.4 7.2 55 292-349 5-59 (65)
189 KOG2796 Uncharacterized conser 97.1 0.15 3.2E-06 43.2 17.7 132 110-243 179-315 (366)
190 PF03704 BTAD: Bacterial trans 97.0 0.039 8.6E-07 43.2 13.6 58 146-205 65-122 (146)
191 COG3898 Uncharacterized membra 97.0 0.25 5.4E-06 44.2 26.2 266 70-353 117-395 (531)
192 KOG1127 TPR repeat-containing 97.0 0.11 2.3E-06 52.1 18.3 51 261-312 574-624 (1238)
193 PF13525 YfiO: Outer membrane 97.0 0.13 2.8E-06 42.9 17.0 63 71-137 6-71 (203)
194 KOG2280 Vacuolar assembly/sort 97.0 0.42 9.2E-06 46.5 25.0 111 285-416 685-795 (829)
195 PF13432 TPR_16: Tetratricopep 96.9 0.0055 1.2E-07 40.3 6.9 50 190-240 8-57 (65)
196 KOG2041 WD40 repeat protein [G 96.9 0.22 4.8E-06 47.9 19.3 235 105-384 689-951 (1189)
197 KOG0553 TPR repeat-containing 96.9 0.017 3.7E-07 49.5 11.1 95 153-252 91-185 (304)
198 KOG2796 Uncharacterized conser 96.9 0.15 3.2E-06 43.1 15.8 148 158-314 164-316 (366)
199 PF03704 BTAD: Bacterial trans 96.8 0.0098 2.1E-07 46.7 8.8 70 181-251 64-138 (146)
200 PF13414 TPR_11: TPR repeat; P 96.8 0.0082 1.8E-07 40.0 7.2 26 145-170 5-30 (69)
201 PF12921 ATP13: Mitochondrial 96.8 0.026 5.6E-07 42.7 10.4 98 142-260 1-99 (126)
202 PF13281 DUF4071: Domain of un 96.8 0.39 8.5E-06 43.6 20.4 32 317-350 303-334 (374)
203 KOG1538 Uncharacterized conser 96.8 0.3 6.4E-06 46.7 18.6 53 286-349 749-801 (1081)
204 COG4700 Uncharacterized protei 96.7 0.21 4.6E-06 39.9 19.0 125 211-341 86-213 (251)
205 PF13414 TPR_11: TPR repeat; P 96.7 0.0088 1.9E-07 39.9 6.7 26 182-207 6-31 (69)
206 PF13281 DUF4071: Domain of un 96.7 0.46 9.9E-06 43.2 21.2 82 107-189 140-227 (374)
207 PRK10803 tol-pal system protei 96.7 0.045 9.7E-07 47.5 12.3 94 217-312 146-245 (263)
208 COG4235 Cytochrome c biogenesi 96.6 0.23 4.9E-06 43.0 16.1 99 213-313 155-256 (287)
209 COG4235 Cytochrome c biogenesi 96.6 0.11 2.4E-06 44.8 14.2 86 283-373 155-243 (287)
210 PRK10803 tol-pal system protei 96.6 0.068 1.5E-06 46.4 13.2 99 250-350 144-246 (263)
211 smart00299 CLH Clathrin heavy 96.5 0.21 4.6E-06 38.7 14.4 42 184-226 12-53 (140)
212 COG4700 Uncharacterized protei 96.4 0.35 7.5E-06 38.7 18.2 146 219-373 61-209 (251)
213 KOG3941 Intermediate in Toll s 96.4 0.031 6.8E-07 47.5 9.4 105 140-264 64-173 (406)
214 KOG1130 Predicted G-alpha GTPa 96.4 0.068 1.5E-06 48.0 11.4 274 70-350 14-344 (639)
215 PRK15331 chaperone protein Sic 96.3 0.37 8.1E-06 37.9 14.3 88 223-312 46-133 (165)
216 PF13371 TPR_9: Tetratricopept 96.3 0.035 7.5E-07 37.4 7.9 52 189-241 5-56 (73)
217 PF13371 TPR_9: Tetratricopept 96.2 0.045 9.9E-07 36.8 7.8 54 258-312 4-57 (73)
218 COG4105 ComL DNA uptake lipopr 96.1 0.7 1.5E-05 39.2 19.9 184 68-277 32-232 (254)
219 KOG3941 Intermediate in Toll s 96.1 0.058 1.2E-06 45.9 9.3 136 85-241 45-186 (406)
220 PF10300 DUF3808: Protein of u 96.1 0.43 9.3E-06 45.5 16.4 165 145-312 190-375 (468)
221 PF04053 Coatomer_WDAD: Coatom 96.1 0.41 8.8E-06 45.0 15.8 156 154-346 272-427 (443)
222 PF13525 YfiO: Outer membrane 96.1 0.7 1.5E-05 38.6 20.9 58 151-208 13-71 (203)
223 KOG2610 Uncharacterized conser 96.1 0.38 8.3E-06 42.2 14.1 118 226-348 115-236 (491)
224 PF09205 DUF1955: Domain of un 96.0 0.45 9.7E-06 35.8 13.3 138 261-422 14-151 (161)
225 PF13424 TPR_12: Tetratricopep 96.0 0.046 1E-06 37.4 7.2 62 286-347 7-72 (78)
226 PF09205 DUF1955: Domain of un 96.0 0.46 1E-05 35.7 13.0 63 252-315 89-151 (161)
227 COG3898 Uncharacterized membra 96.0 1.2 2.6E-05 40.2 28.9 279 121-416 97-388 (531)
228 PF13170 DUF4003: Protein of u 95.9 1.1 2.4E-05 39.7 19.5 130 124-255 78-223 (297)
229 KOG1130 Predicted G-alpha GTPa 95.9 0.19 4.1E-06 45.3 11.9 284 117-417 26-341 (639)
230 KOG1920 IkappaB kinase complex 95.9 2.5 5.5E-05 43.7 20.7 91 281-384 932-1027(1265)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.32 6.9E-06 44.9 13.6 63 107-171 74-140 (453)
232 PF13424 TPR_12: Tetratricopep 95.8 0.04 8.6E-07 37.7 6.3 23 182-204 49-71 (78)
233 KOG1538 Uncharacterized conser 95.7 2 4.2E-05 41.4 18.2 121 221-352 710-848 (1081)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.21 4.6E-06 46.0 11.9 65 141-208 73-141 (453)
235 smart00299 CLH Clathrin heavy 95.7 0.73 1.6E-05 35.7 14.2 85 112-205 11-95 (140)
236 KOG0543 FKBP-type peptidyl-pro 95.5 0.33 7.1E-06 43.8 11.9 96 222-320 216-325 (397)
237 PF04184 ST7: ST7 protein; In 95.4 2.3 5.1E-05 39.7 21.0 166 150-331 175-341 (539)
238 KOG2041 WD40 repeat protein [G 95.4 3 6.5E-05 40.7 21.7 240 68-349 689-951 (1189)
239 COG3118 Thioredoxin domain-con 95.3 1.7 3.7E-05 37.7 15.8 122 188-312 143-264 (304)
240 PF13512 TPR_18: Tetratricopep 95.3 0.36 7.9E-06 37.0 10.2 84 68-155 8-94 (142)
241 COG3118 Thioredoxin domain-con 95.3 1.7 3.8E-05 37.7 16.6 180 78-268 110-291 (304)
242 PF04053 Coatomer_WDAD: Coatom 95.2 0.64 1.4E-05 43.8 13.7 58 178-244 346-403 (443)
243 PRK15331 chaperone protein Sic 95.2 0.64 1.4E-05 36.7 11.3 86 81-171 48-133 (165)
244 COG1729 Uncharacterized protei 95.1 0.65 1.4E-05 39.8 12.2 98 110-208 144-244 (262)
245 PF13428 TPR_14: Tetratricopep 95.1 0.08 1.7E-06 31.5 5.1 39 324-364 4-42 (44)
246 COG5107 RNA14 Pre-mRNA 3'-end 95.1 2.8 6.1E-05 38.6 31.4 128 286-418 399-529 (660)
247 PF10300 DUF3808: Protein of u 95.0 2.5 5.5E-05 40.3 17.3 163 110-276 190-374 (468)
248 PF10602 RPN7: 26S proteasome 95.0 0.67 1.4E-05 37.6 11.5 64 286-349 38-101 (177)
249 KOG1941 Acetylcholine receptor 95.0 1.9 4.2E-05 38.5 14.7 230 81-311 17-273 (518)
250 COG1729 Uncharacterized protei 94.9 0.5 1.1E-05 40.4 10.8 60 290-349 184-243 (262)
251 KOG0550 Molecular chaperone (D 94.8 3.2 6.8E-05 37.9 18.2 252 117-384 58-349 (486)
252 KOG2610 Uncharacterized conser 94.7 1 2.2E-05 39.7 12.3 154 81-240 114-273 (491)
253 PF07035 Mic1: Colon cancer-as 94.6 1.8 4E-05 34.4 15.1 135 128-277 14-148 (167)
254 PF13170 DUF4003: Protein of u 94.4 3.4 7.4E-05 36.7 21.6 124 196-321 79-219 (297)
255 KOG2114 Vacuolar assembly/sort 94.3 0.98 2.1E-05 44.7 12.6 149 181-347 336-489 (933)
256 COG3629 DnrI DNA-binding trans 94.2 0.8 1.7E-05 39.8 10.8 78 180-258 154-236 (280)
257 KOG2114 Vacuolar assembly/sort 94.2 1.8 3.9E-05 43.0 14.0 77 155-239 380-456 (933)
258 KOG0543 FKBP-type peptidyl-pro 94.1 1.5 3.3E-05 39.7 12.5 123 187-312 216-354 (397)
259 PF11207 DUF2989: Protein of u 93.9 0.78 1.7E-05 37.5 9.6 78 81-163 117-198 (203)
260 COG4649 Uncharacterized protei 93.9 2.7 5.8E-05 33.5 14.8 128 119-247 69-200 (221)
261 KOG1586 Protein required for f 93.8 3 6.5E-05 35.0 12.7 16 225-240 25-40 (288)
262 PF07079 DUF1347: Protein of u 93.7 5.8 0.00013 36.7 25.5 137 119-261 17-179 (549)
263 PF00637 Clathrin: Region in C 93.7 0.0017 3.8E-08 50.8 -5.9 48 225-272 18-65 (143)
264 COG0457 NrfG FOG: TPR repeat [ 93.6 3.6 7.9E-05 34.2 26.3 202 143-349 59-264 (291)
265 PRK11906 transcriptional regul 93.5 6.4 0.00014 36.8 16.4 166 215-384 252-435 (458)
266 KOG1550 Extracellular protein 93.3 8.7 0.00019 37.7 21.8 185 159-352 228-428 (552)
267 KOG1941 Acetylcholine receptor 93.3 5.8 0.00013 35.6 16.1 227 155-381 18-271 (518)
268 COG3629 DnrI DNA-binding trans 93.3 1.3 2.7E-05 38.6 10.3 78 144-223 154-236 (280)
269 PF04184 ST7: ST7 protein; In 93.1 1.9 4.1E-05 40.3 11.7 152 72-241 170-322 (539)
270 PF13512 TPR_18: Tetratricopep 93.1 3.2 6.8E-05 32.0 12.3 51 261-312 22-75 (142)
271 KOG4555 TPR repeat-containing 93.1 2.9 6.2E-05 31.5 10.5 93 258-351 52-145 (175)
272 PF13428 TPR_14: Tetratricopep 93.0 0.38 8.3E-06 28.5 5.1 27 111-137 4-30 (44)
273 PF13929 mRNA_stabil: mRNA sta 93.0 5 0.00011 34.9 13.4 148 146-296 134-290 (292)
274 PF10602 RPN7: 26S proteasome 92.9 2.4 5.1E-05 34.4 11.1 63 215-277 37-101 (177)
275 KOG4570 Uncharacterized conser 92.7 0.84 1.8E-05 39.8 8.3 107 136-244 57-165 (418)
276 PF07035 Mic1: Colon cancer-as 92.7 4.3 9.3E-05 32.4 16.2 134 200-349 15-148 (167)
277 PF08631 SPO22: Meiosis protei 92.4 7.4 0.00016 34.3 26.2 24 185-208 127-150 (278)
278 PF13176 TPR_7: Tetratricopept 92.2 0.39 8.3E-06 27.0 4.1 23 217-239 2-24 (36)
279 PF13929 mRNA_stabil: mRNA sta 92.2 7.4 0.00016 33.9 17.1 137 182-321 134-280 (292)
280 PF08631 SPO22: Meiosis protei 92.1 7.9 0.00017 34.1 24.2 62 216-278 86-150 (278)
281 KOG4570 Uncharacterized conser 92.1 2.6 5.6E-05 36.9 10.5 100 107-209 63-165 (418)
282 PF13176 TPR_7: Tetratricopept 92.1 0.38 8.3E-06 27.0 4.0 26 393-418 1-26 (36)
283 KOG4555 TPR repeat-containing 92.0 4.2 9.1E-05 30.7 11.1 91 117-209 52-145 (175)
284 PF09613 HrpB1_HrpK: Bacterial 92.0 5.1 0.00011 31.6 12.9 52 296-350 22-73 (160)
285 COG4785 NlpI Lipoprotein NlpI, 91.5 7.3 0.00016 32.4 15.4 28 322-349 238-265 (297)
286 KOG1464 COP9 signalosome, subu 91.5 8.4 0.00018 33.1 15.6 207 63-270 18-252 (440)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 91.4 2 4.3E-05 30.3 7.5 46 231-276 24-69 (103)
288 PRK11619 lytic murein transgly 91.0 18 0.0004 36.2 32.2 118 297-417 254-372 (644)
289 PF13431 TPR_17: Tetratricopep 91.0 0.31 6.6E-06 27.1 2.7 31 98-128 3-33 (34)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 1.6 3.5E-05 30.8 6.4 59 126-186 25-83 (103)
291 PF09613 HrpB1_HrpK: Bacterial 90.4 7.5 0.00016 30.7 13.5 50 120-171 22-72 (160)
292 KOG2063 Vacuolar assembly/sort 90.3 18 0.00038 37.2 15.8 20 330-349 693-712 (877)
293 PF02284 COX5A: Cytochrome c o 89.8 2 4.3E-05 30.7 6.4 42 235-276 31-72 (108)
294 PF04097 Nic96: Nup93/Nic96; 89.1 26 0.00056 35.0 23.9 66 69-138 110-182 (613)
295 PF02259 FAT: FAT domain; Int 88.9 18 0.00039 32.9 22.3 49 81-136 9-57 (352)
296 TIGR02561 HrpB1_HrpK type III 88.8 9.5 0.00021 29.6 12.8 51 297-351 23-74 (153)
297 COG0457 NrfG FOG: TPR repeat [ 88.6 13 0.00027 30.8 28.9 223 156-384 36-264 (291)
298 COG4105 ComL DNA uptake lipopr 88.0 16 0.00035 31.3 23.2 54 155-208 46-100 (254)
299 PF13431 TPR_17: Tetratricopep 88.0 0.76 1.7E-05 25.4 2.9 21 213-233 12-32 (34)
300 PF02284 COX5A: Cytochrome c o 87.5 8.6 0.00019 27.6 9.8 60 267-329 28-87 (108)
301 COG3947 Response regulator con 87.1 20 0.00043 31.4 15.6 58 252-310 282-339 (361)
302 PF00515 TPR_1: Tetratricopept 87.0 2 4.3E-05 23.4 4.3 28 392-419 2-29 (34)
303 PF13762 MNE1: Mitochondrial s 86.9 13 0.00027 28.9 10.3 96 60-156 26-128 (145)
304 PF00637 Clathrin: Region in C 86.8 0.37 7.9E-06 37.5 1.5 84 114-205 13-96 (143)
305 PF13374 TPR_10: Tetratricopep 86.5 1.9 4.1E-05 24.7 4.3 29 391-419 2-30 (42)
306 PF12862 Apc5: Anaphase-promot 86.5 8 0.00017 27.5 8.2 61 76-136 4-69 (94)
307 COG4649 Uncharacterized protei 86.2 16 0.00034 29.3 16.4 142 178-320 58-203 (221)
308 PF00515 TPR_1: Tetratricopept 86.1 2.1 4.5E-05 23.3 4.1 21 290-310 7-27 (34)
309 KOG0276 Vesicle coat complex C 86.1 13 0.00027 36.0 11.0 133 108-274 614-746 (794)
310 PRK09687 putative lyase; Provi 85.9 24 0.00052 31.1 27.7 18 106-123 35-52 (280)
311 KOG0276 Vesicle coat complex C 85.9 30 0.00064 33.6 13.3 131 181-346 616-746 (794)
312 PF10579 Rapsyn_N: Rapsyn N-te 85.7 3.1 6.8E-05 28.2 5.2 48 296-343 18-65 (80)
313 PF11207 DUF2989: Protein of u 85.7 11 0.00024 31.0 9.3 78 190-269 118-198 (203)
314 PF13374 TPR_10: Tetratricopep 85.6 2.4 5.2E-05 24.3 4.4 27 215-241 3-29 (42)
315 PF07719 TPR_2: Tetratricopept 85.5 2.6 5.6E-05 22.8 4.3 28 392-419 2-29 (34)
316 COG1747 Uncharacterized N-term 85.0 36 0.00078 32.4 19.6 95 213-312 65-159 (711)
317 KOG1464 COP9 signalosome, subu 84.3 26 0.00057 30.2 17.4 209 137-348 20-259 (440)
318 PF07719 TPR_2: Tetratricopept 83.6 3.1 6.8E-05 22.5 4.1 22 290-311 7-28 (34)
319 PF07163 Pex26: Pex26 protein; 83.0 19 0.00041 31.3 9.9 20 221-240 125-144 (309)
320 PF07721 TPR_4: Tetratricopept 82.9 2 4.4E-05 21.9 2.8 24 393-416 3-26 (26)
321 COG2909 MalT ATP-dependent tra 82.7 60 0.0013 33.2 25.1 201 151-352 423-649 (894)
322 PHA02875 ankyrin repeat protei 82.7 8.5 0.00018 36.2 9.0 213 151-391 7-230 (413)
323 TIGR03504 FimV_Cterm FimV C-te 82.4 2.6 5.7E-05 25.0 3.4 26 396-421 4-29 (44)
324 PF13174 TPR_6: Tetratricopept 82.3 2.3 4.9E-05 22.8 3.1 27 394-420 3-29 (33)
325 PRK15180 Vi polysaccharide bio 81.9 47 0.001 31.4 15.1 116 122-242 303-419 (831)
326 KOG4077 Cytochrome c oxidase, 80.8 14 0.00031 27.6 7.4 47 232-278 67-113 (149)
327 PF10345 Cohesin_load: Cohesin 80.7 65 0.0014 32.2 32.7 375 43-418 105-604 (608)
328 PF13181 TPR_8: Tetratricopept 80.5 5.4 0.00012 21.5 4.3 28 392-419 2-29 (34)
329 KOG1585 Protein required for f 80.4 36 0.00078 29.1 15.9 25 390-415 227-251 (308)
330 COG2976 Uncharacterized protei 80.4 31 0.00067 28.3 14.2 89 150-244 96-189 (207)
331 PF02259 FAT: FAT domain; Int 80.1 47 0.001 30.2 22.4 174 76-277 35-212 (352)
332 COG4455 ImpE Protein of avirul 79.1 22 0.00048 29.7 8.7 75 217-292 4-80 (273)
333 PRK09687 putative lyase; Provi 79.0 45 0.00098 29.4 26.3 234 141-402 35-278 (280)
334 PRK11906 transcriptional regul 78.9 59 0.0013 30.7 19.4 163 180-348 252-434 (458)
335 KOG4234 TPR repeat-containing 78.9 31 0.00067 28.5 9.3 86 260-349 106-196 (271)
336 TIGR02561 HrpB1_HrpK type III 78.0 31 0.00066 26.9 11.9 18 154-171 55-72 (153)
337 COG4455 ImpE Protein of avirul 77.9 23 0.0005 29.6 8.4 76 145-222 3-80 (273)
338 smart00638 LPD_N Lipoprotein N 77.3 79 0.0017 31.3 22.0 63 178-245 309-371 (574)
339 TIGR03504 FimV_Cterm FimV C-te 77.2 6.5 0.00014 23.3 4.0 23 290-312 5-27 (44)
340 KOG2297 Predicted translation 77.0 53 0.0011 29.1 14.1 171 34-234 162-341 (412)
341 cd08819 CARD_MDA5_2 Caspase ac 76.9 22 0.00048 24.7 7.0 66 268-341 21-86 (88)
342 PF13181 TPR_8: Tetratricopept 76.1 9 0.00019 20.6 4.3 25 217-241 4-28 (34)
343 KOG4077 Cytochrome c oxidase, 76.0 18 0.00039 27.2 6.7 45 127-171 68-112 (149)
344 PF07163 Pex26: Pex26 protein; 75.9 44 0.00096 29.1 9.9 89 147-237 87-181 (309)
345 PF13762 MNE1: Mitochondrial s 75.6 36 0.00078 26.5 13.1 81 182-262 42-128 (145)
346 TIGR02508 type_III_yscG type I 75.5 27 0.00059 25.1 8.0 13 155-167 51-63 (115)
347 KOG1258 mRNA processing protei 75.0 85 0.0018 30.5 33.7 87 81-171 90-179 (577)
348 COG2909 MalT ATP-dependent tra 74.5 1.1E+02 0.0023 31.5 24.3 223 52-274 431-684 (894)
349 COG3947 Response regulator con 74.3 61 0.0013 28.5 17.6 56 219-275 284-339 (361)
350 PF06552 TOM20_plant: Plant sp 72.3 28 0.00061 28.1 7.5 40 160-208 97-136 (186)
351 PHA02875 ankyrin repeat protei 71.8 83 0.0018 29.5 12.2 207 47-285 9-231 (413)
352 COG2178 Predicted RNA-binding 71.5 55 0.0012 26.8 9.9 18 402-419 132-149 (204)
353 PF10579 Rapsyn_N: Rapsyn N-te 71.3 16 0.00035 24.8 5.1 46 261-306 18-65 (80)
354 PF11846 DUF3366: Domain of un 71.3 23 0.0005 29.1 7.5 32 176-207 141-172 (193)
355 PF11848 DUF3368: Domain of un 71.3 16 0.00035 22.1 4.8 33 119-151 13-45 (48)
356 cd08819 CARD_MDA5_2 Caspase ac 71.1 32 0.0007 24.0 6.7 61 97-162 25-85 (88)
357 PHA03100 ankyrin repeat protei 70.8 58 0.0013 31.2 11.2 7 118-124 42-48 (480)
358 TIGR02508 type_III_yscG type I 70.6 37 0.0008 24.4 8.4 52 222-279 47-98 (115)
359 KOG3636 Uncharacterized conser 69.9 97 0.0021 29.0 14.1 70 242-312 176-253 (669)
360 KOG0991 Replication factor C, 69.6 70 0.0015 27.2 13.2 39 246-285 236-274 (333)
361 KOG0890 Protein kinase of the 69.0 2.3E+02 0.005 33.0 25.0 148 113-271 1388-1540(2382)
362 PRK15180 Vi polysaccharide bio 68.9 1.1E+02 0.0023 29.1 16.2 125 76-209 295-421 (831)
363 PF14689 SPOB_a: Sensor_kinase 68.4 19 0.00041 23.2 5.0 22 219-240 28-49 (62)
364 KOG2908 26S proteasome regulat 68.4 91 0.002 28.1 10.5 67 219-285 80-156 (380)
365 PF11663 Toxin_YhaV: Toxin wit 68.3 5.9 0.00013 30.0 2.9 23 297-319 108-130 (140)
366 PRK10564 maltose regulon perip 67.5 15 0.00033 32.3 5.6 30 252-281 260-289 (303)
367 COG2976 Uncharacterized protei 67.2 70 0.0015 26.3 14.1 91 257-351 97-189 (207)
368 PF14689 SPOB_a: Sensor_kinase 67.0 16 0.00034 23.6 4.4 24 148-171 28-51 (62)
369 COG4785 NlpI Lipoprotein NlpI, 66.5 78 0.0017 26.6 16.5 64 107-171 98-161 (297)
370 KOG1585 Protein required for f 66.5 84 0.0018 27.0 17.9 199 145-370 33-241 (308)
371 KOG4642 Chaperone-dependent E3 66.2 84 0.0018 26.9 10.4 103 258-366 19-126 (284)
372 KOG2908 26S proteasome regulat 66.2 94 0.002 28.0 10.0 68 254-321 80-157 (380)
373 PF09477 Type_III_YscG: Bacter 66.2 49 0.0011 24.1 7.5 18 191-208 81-98 (116)
374 KOG4234 TPR repeat-containing 66.0 76 0.0017 26.3 9.3 87 223-313 104-197 (271)
375 PF10366 Vps39_1: Vacuolar sor 66.0 50 0.0011 24.2 7.5 26 182-207 42-67 (108)
376 PF11846 DUF3366: Domain of un 65.5 37 0.00081 27.9 7.5 32 211-242 141-172 (193)
377 PF11848 DUF3368: Domain of un 65.0 28 0.00061 21.0 5.2 13 233-245 21-33 (48)
378 KOG4507 Uncharacterized conser 64.4 63 0.0014 31.4 9.2 155 63-224 563-720 (886)
379 KOG2582 COP9 signalosome, subu 62.8 1.2E+02 0.0027 27.6 12.8 56 259-314 287-346 (422)
380 cd00280 TRFH Telomeric Repeat 62.4 84 0.0018 25.6 11.6 21 187-207 119-139 (200)
381 PF11663 Toxin_YhaV: Toxin wit 62.2 9.3 0.0002 29.0 2.9 34 331-367 105-138 (140)
382 smart00028 TPR Tetratricopepti 61.9 14 0.00031 18.6 3.2 28 392-419 2-29 (34)
383 PF10475 DUF2450: Protein of u 61.8 87 0.0019 27.8 9.6 52 185-242 104-155 (291)
384 KOG4648 Uncharacterized conser 61.1 86 0.0019 28.3 8.9 51 151-204 105-156 (536)
385 smart00638 LPD_N Lipoprotein N 60.8 1.8E+02 0.0039 28.8 27.3 64 69-139 308-371 (574)
386 PF06552 TOM20_plant: Plant sp 60.1 92 0.002 25.3 10.8 90 324-421 31-137 (186)
387 PRK10564 maltose regulon perip 59.7 27 0.00058 30.8 5.7 29 183-211 261-289 (303)
388 COG1747 Uncharacterized N-term 59.3 1.7E+02 0.0037 28.2 24.1 165 106-278 64-234 (711)
389 COG5159 RPN6 26S proteasome re 59.3 1.3E+02 0.0027 26.6 13.7 45 260-304 14-65 (421)
390 PF10475 DUF2450: Protein of u 58.7 92 0.002 27.7 9.2 24 246-269 194-217 (291)
391 COG0735 Fur Fe2+/Zn2+ uptake r 58.6 75 0.0016 24.8 7.6 41 308-351 10-50 (145)
392 KOG0687 26S proteasome regulat 57.9 1.4E+02 0.0031 26.8 15.2 175 122-298 36-230 (393)
393 PF07575 Nucleopor_Nup85: Nup8 57.9 80 0.0017 31.3 9.5 23 298-320 509-531 (566)
394 KOG4648 Uncharacterized conser 57.9 1.1E+02 0.0023 27.8 8.9 50 187-238 105-155 (536)
395 PRK11619 lytic murein transgly 57.2 2.2E+02 0.0048 28.7 28.7 181 157-345 255-463 (644)
396 COG0735 Fur Fe2+/Zn2+ uptake r 56.7 79 0.0017 24.6 7.5 25 220-244 26-50 (145)
397 PHA03100 ankyrin repeat protei 56.6 1.9E+02 0.0041 27.8 13.4 27 43-72 38-64 (480)
398 PF00244 14-3-3: 14-3-3 protei 56.0 1.3E+02 0.0028 25.8 11.3 23 327-349 175-197 (236)
399 PF01347 Vitellogenin_N: Lipop 55.7 2.3E+02 0.0049 28.4 16.6 119 175-297 341-469 (618)
400 PHA02798 ankyrin-like protein; 55.5 1.2E+02 0.0027 29.2 10.3 49 268-318 88-139 (489)
401 cd00280 TRFH Telomeric Repeat 55.5 1.1E+02 0.0024 25.0 7.9 48 195-242 85-139 (200)
402 PF14669 Asp_Glu_race_2: Putat 55.3 1.2E+02 0.0025 25.0 13.5 23 324-346 184-206 (233)
403 PF10345 Cohesin_load: Cohesin 55.1 2.3E+02 0.005 28.4 30.0 168 107-275 58-251 (608)
404 PF11838 ERAP1_C: ERAP1-like C 54.5 1.6E+02 0.0035 26.3 20.2 80 196-278 147-230 (324)
405 PF07575 Nucleopor_Nup85: Nup8 54.4 87 0.0019 31.0 9.1 61 213-275 404-464 (566)
406 PRK08691 DNA polymerase III su 54.0 2E+02 0.0044 29.2 11.2 46 160-207 181-226 (709)
407 COG5108 RPO41 Mitochondrial DN 53.0 1.1E+02 0.0025 30.3 9.0 90 148-240 33-129 (1117)
408 PF02847 MA3: MA3 domain; Int 52.3 72 0.0016 23.3 6.5 22 219-240 7-28 (113)
409 PF14669 Asp_Glu_race_2: Putat 51.1 1.4E+02 0.003 24.6 13.5 70 326-416 137-206 (233)
410 PF11838 ERAP1_C: ERAP1-like C 51.1 1.8E+02 0.004 26.0 22.1 145 230-383 146-302 (324)
411 PF11817 Foie-gras_1: Foie gra 50.9 70 0.0015 27.6 7.0 57 184-240 183-244 (247)
412 PF02847 MA3: MA3 domain; Int 49.9 88 0.0019 22.8 6.6 22 148-169 7-28 (113)
413 COG5159 RPN6 26S proteasome re 49.6 1.9E+02 0.004 25.6 15.6 156 188-344 12-188 (421)
414 KOG2034 Vacuolar sorting prote 49.6 3.2E+02 0.0069 28.3 24.6 58 355-413 626-683 (911)
415 PRK14963 DNA polymerase III su 49.1 2.6E+02 0.0056 27.2 11.1 85 160-247 178-274 (504)
416 PF10366 Vps39_1: Vacuolar sor 48.9 1E+02 0.0023 22.5 8.6 26 324-349 42-67 (108)
417 KOG4507 Uncharacterized conser 48.9 94 0.002 30.3 7.7 102 262-368 620-721 (886)
418 PRK14958 DNA polymerase III su 48.8 2.7E+02 0.0058 27.2 12.4 83 163-248 184-279 (509)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 48.5 1.2E+02 0.0025 23.0 9.3 43 126-168 81-124 (126)
420 PRK09857 putative transposase; 48.1 1.8E+02 0.0039 25.9 9.2 16 301-316 257-272 (292)
421 KOG2396 HAT (Half-A-TPR) repea 47.9 2.6E+02 0.0057 26.9 21.9 96 317-416 457-555 (568)
422 KOG4567 GTPase-activating prot 47.9 1.3E+02 0.0028 26.8 7.8 58 234-296 263-320 (370)
423 PF09454 Vps23_core: Vps23 cor 47.7 57 0.0012 21.3 4.5 47 177-224 6-52 (65)
424 PF11768 DUF3312: Protein of u 47.6 2.8E+02 0.006 27.1 11.9 60 147-208 412-473 (545)
425 KOG2063 Vacuolar assembly/sort 46.9 3.7E+02 0.0079 28.2 20.0 117 109-226 505-638 (877)
426 COG2137 OraA Uncharacterized p 46.9 1.5E+02 0.0034 23.9 10.2 73 268-346 54-126 (174)
427 PF09454 Vps23_core: Vps23 cor 46.5 43 0.00093 21.9 3.8 49 212-261 6-54 (65)
428 KOG4814 Uncharacterized conser 46.5 1.9E+02 0.0041 28.8 9.3 99 72-171 356-456 (872)
429 smart00386 HAT HAT (Half-A-TPR 46.3 42 0.00092 17.3 3.6 28 335-364 1-28 (33)
430 PF04097 Nic96: Nup93/Nic96; 46.0 3.3E+02 0.0071 27.4 18.3 26 324-349 327-355 (613)
431 KOG4521 Nuclear pore complex, 45.9 4.2E+02 0.0091 28.6 13.0 85 286-374 985-1071(1480)
432 PRK10941 hypothetical protein; 45.0 2.2E+02 0.0047 25.0 10.3 58 148-208 186-244 (269)
433 PHA02989 ankyrin repeat protei 44.9 3E+02 0.0065 26.6 12.6 17 56-72 16-32 (494)
434 PF14853 Fis1_TPR_C: Fis1 C-te 44.3 77 0.0017 19.7 4.6 20 293-312 10-29 (53)
435 PRK10941 hypothetical protein; 44.3 2.2E+02 0.0048 25.0 10.5 60 287-349 184-243 (269)
436 KOG1498 26S proteasome regulat 44.0 2.7E+02 0.0058 25.9 14.8 27 393-419 214-240 (439)
437 PRK11639 zinc uptake transcrip 44.0 1.3E+02 0.0029 24.1 7.1 35 123-157 40-74 (169)
438 PF09670 Cas_Cas02710: CRISPR- 44.0 2.7E+02 0.0059 25.9 11.3 56 187-243 139-198 (379)
439 PHA02989 ankyrin repeat protei 43.4 3.1E+02 0.0068 26.5 11.9 13 271-283 200-212 (494)
440 KOG1550 Extracellular protein 43.4 3.4E+02 0.0073 26.8 24.7 154 118-279 259-427 (552)
441 KOG0403 Neoplastic transformat 43.4 2.9E+02 0.0064 26.1 18.0 60 361-423 513-575 (645)
442 PRK13341 recombination factor 42.7 4E+02 0.0086 27.5 16.4 56 226-281 270-330 (725)
443 PRK13342 recombination factor 42.5 3E+02 0.0065 26.0 19.0 21 228-248 244-264 (413)
444 COG5108 RPO41 Mitochondrial DN 42.5 1.8E+02 0.0039 29.0 8.6 46 113-158 33-80 (1117)
445 cd07153 Fur_like Ferric uptake 42.0 71 0.0015 23.5 5.1 45 115-159 7-51 (116)
446 PF08870 DUF1832: Domain of un 41.9 74 0.0016 23.6 4.9 33 228-261 62-94 (113)
447 PF09670 Cas_Cas02710: CRISPR- 41.3 3E+02 0.0065 25.6 11.6 54 117-171 140-197 (379)
448 PF12926 MOZART2: Mitotic-spin 41.1 1.2E+02 0.0027 21.1 8.0 41 270-310 29-69 (88)
449 PF03745 DUF309: Domain of unk 40.2 1E+02 0.0022 19.9 5.5 17 225-241 10-26 (62)
450 PF04190 DUF410: Protein of un 40.1 2.5E+02 0.0055 24.4 18.1 25 213-237 89-113 (260)
451 TIGR03184 DNA_S_dndE DNA sulfu 39.9 88 0.0019 22.8 4.9 90 160-262 5-97 (105)
452 PF01347 Vitellogenin_N: Lipop 39.9 4E+02 0.0087 26.7 21.6 67 66-137 340-407 (618)
453 PF12862 Apc5: Anaphase-promot 39.7 1.3E+02 0.0029 21.1 7.5 23 327-349 47-69 (94)
454 PF11768 DUF3312: Protein of u 39.7 3.7E+02 0.008 26.2 10.3 22 219-240 413-434 (545)
455 PRK14956 DNA polymerase III su 39.7 3.6E+02 0.0078 26.1 12.4 44 161-206 184-227 (484)
456 KOG4521 Nuclear pore complex, 39.2 5.4E+02 0.012 27.9 13.7 80 216-301 985-1071(1480)
457 PRK11639 zinc uptake transcrip 38.9 1.9E+02 0.0041 23.2 7.3 36 227-262 38-73 (169)
458 PRK06645 DNA polymerase III su 38.9 3.8E+02 0.0083 26.1 11.3 85 161-248 191-291 (507)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 38.4 1.7E+02 0.0038 22.0 9.5 44 302-346 81-124 (126)
460 KOG2066 Vacuolar assembly/sort 38.1 4.6E+02 0.01 26.9 22.2 74 115-195 363-439 (846)
461 PF11817 Foie-gras_1: Foie gra 37.9 2.6E+02 0.0057 24.0 9.3 62 145-206 180-245 (247)
462 PF09477 Type_III_YscG: Bacter 37.8 1.6E+02 0.0035 21.6 9.2 79 194-279 21-99 (116)
463 PF11123 DNA_Packaging_2: DNA 37.5 1.3E+02 0.0027 20.2 5.0 32 123-155 12-43 (82)
464 KOG4567 GTPase-activating prot 37.1 2.4E+02 0.0052 25.3 7.8 70 199-273 263-342 (370)
465 KOG2659 LisH motif-containing 37.0 2.6E+02 0.0057 23.7 8.9 101 139-239 22-128 (228)
466 PRK09857 putative transposase; 36.7 2.9E+02 0.0062 24.6 8.7 61 290-353 212-272 (292)
467 KOG2066 Vacuolar assembly/sort 36.1 5E+02 0.011 26.7 26.5 147 81-241 367-532 (846)
468 PRK07003 DNA polymerase III su 36.1 5.2E+02 0.011 26.9 16.2 84 159-245 180-276 (830)
469 cd07153 Fur_like Ferric uptake 35.6 93 0.002 22.8 4.8 38 227-264 13-50 (116)
470 PF04190 DUF410: Protein of un 35.4 3E+02 0.0065 24.0 18.0 68 277-344 42-113 (260)
471 COG0819 TenA Putative transcri 35.2 2.8E+02 0.006 23.5 8.5 26 207-232 102-127 (218)
472 COG5187 RPN7 26S proteasome re 35.0 3.3E+02 0.0071 24.2 14.6 173 231-405 55-241 (412)
473 PF06957 COPI_C: Coatomer (COP 34.6 2.9E+02 0.0062 26.1 8.5 129 224-371 214-350 (422)
474 PF10255 Paf67: RNA polymerase 34.6 3.4E+02 0.0073 25.5 8.9 99 213-311 74-191 (404)
475 COG4715 Uncharacterized conser 34.5 4.5E+02 0.0098 25.7 20.1 208 144-361 304-538 (587)
476 KOG0686 COP9 signalosome, subu 34.4 3.9E+02 0.0085 25.0 12.4 64 180-243 151-216 (466)
477 PF13934 ELYS: Nuclear pore co 34.4 2.9E+02 0.0063 23.5 15.1 97 118-226 88-184 (226)
478 COG5116 RPN2 26S proteasome re 34.2 4.7E+02 0.01 25.8 10.9 28 287-314 211-238 (926)
479 PF04090 RNA_pol_I_TF: RNA pol 34.0 2.8E+02 0.006 23.1 10.7 48 215-263 42-90 (199)
480 PF01475 FUR: Ferric uptake re 33.9 68 0.0015 23.8 3.8 44 114-157 13-56 (120)
481 PF01475 FUR: Ferric uptake re 33.9 85 0.0018 23.3 4.3 28 224-251 17-44 (120)
482 PF09868 DUF2095: Uncharacteri 33.3 1.6E+02 0.0034 21.8 5.1 26 113-138 66-91 (128)
483 COG2178 Predicted RNA-binding 32.8 2.8E+02 0.0062 22.9 10.7 17 296-312 133-149 (204)
484 PRK14951 DNA polymerase III su 32.5 5.3E+02 0.012 25.9 13.5 85 160-247 186-283 (618)
485 PF04910 Tcf25: Transcriptiona 32.4 4.1E+02 0.0088 24.6 17.0 127 102-242 34-167 (360)
486 COG4259 Uncharacterized protei 32.1 2E+02 0.0042 20.8 6.4 56 124-182 53-108 (121)
487 PF08424 NRDE-2: NRDE-2, neces 31.8 3.9E+02 0.0084 24.1 17.4 143 97-242 8-182 (321)
488 KOG4279 Serine/threonine prote 31.8 5.8E+02 0.013 26.2 12.9 119 161-285 181-321 (1226)
489 PF09797 NatB_MDM20: N-acetylt 31.2 4.2E+02 0.0092 24.4 23.8 22 289-310 222-243 (365)
490 KOG3364 Membrane protein invol 31.2 2.5E+02 0.0054 21.7 9.4 21 292-312 79-99 (149)
491 smart00804 TAP_C C-terminal do 31.2 52 0.0011 21.4 2.3 14 158-171 40-53 (63)
492 KOG3364 Membrane protein invol 30.5 2.6E+02 0.0056 21.7 9.0 22 187-208 79-100 (149)
493 PF02631 RecX: RecX family; I 30.4 2.3E+02 0.0049 21.0 9.3 50 267-317 10-59 (121)
494 PF12926 MOZART2: Mitotic-spin 30.1 1.9E+02 0.0042 20.2 8.9 43 129-171 29-71 (88)
495 PRK07764 DNA polymerase III su 30.0 6.7E+02 0.015 26.4 12.2 45 160-206 182-226 (824)
496 PF07678 A2M_comp: A-macroglob 30.0 3E+02 0.0065 23.7 7.6 44 196-241 116-159 (246)
497 smart00777 Mad3_BUB1_I Mad3/BU 29.4 2.5E+02 0.0055 21.2 9.3 44 301-345 80-123 (125)
498 PRK07003 DNA polymerase III su 29.2 6.7E+02 0.015 26.1 17.2 84 196-282 181-278 (830)
499 smart00544 MA3 Domain in DAP-5 29.0 2.3E+02 0.0049 20.6 10.0 25 288-312 6-30 (113)
500 smart00544 MA3 Domain in DAP-5 29.0 2.3E+02 0.005 20.6 10.0 23 219-241 7-29 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-61 Score=478.47 Aligned_cols=383 Identities=19% Similarity=0.212 Sum_probs=359.1
Q ss_pred CCCccccHHHHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhH
Q 014502 34 STSVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDE 110 (423)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~ 110 (423)
.|+..+||.++..+++.+. ..+.++|+.|.+.|+.||..+||++|.+ ++.|+.++|.++ |++|.+.+. ||..+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v----f~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV----FHEMVNAGVEANVHT 509 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHcCCCCCHHH
Confidence 4899999999999999994 5669999999999999999999999999 799999999999 688888777 89999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCCHHhHHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS-EEYKPNSKTYDAFISGF 189 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~ 189 (423)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|+++|.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999752 57899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (423)
++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|++|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+ |+.||.+|++.|++++|.++|++|.+
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt--yN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST--MNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988 99999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----c-------------------C
Q 014502 350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----A-------------------G 405 (423)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g 405 (423)
.|+.|+ ..+|+.++.+|++.|+.+ +.+++.+|.+.|+.||..+|++++..|.+ + +
T Consensus 748 ~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 748 LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 999776 999999999999999995 78899999999999999999999876542 1 2
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 014502 406 LSGKLDSVINEMKFAEYM 423 (423)
Q Consensus 406 ~~~~a~~~~~~m~~~g~~ 423 (423)
..++|..+|++|.+.|+.
T Consensus 827 w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 827 WTSWALMVYRETISAGTL 844 (1060)
T ss_pred hHHHHHHHHHHHHHCCCC
Confidence 346799999999999974
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-60 Score=473.28 Aligned_cols=381 Identities=17% Similarity=0.181 Sum_probs=352.7
Q ss_pred CCccccHHHHHHHhcCC-chhHHHHHHHhhhccCC--------------------------------cChhhHHHHHHH-
Q 014502 35 TSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFN--------------------------------SSQFSWDALITS- 80 (423)
Q Consensus 35 ~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~--------------------------------p~~~~~~~li~~- 80 (423)
++...|..++..+++.+ ..++.++|+.|.+.|+. ||..+|+.+|.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34445666666666666 34556666666665542 788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (423)
++.|++++|.++ +++|.+.+. ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 448 ~k~g~~e~A~~l----f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 448 ASSQDIDGALRV----LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HhCcCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 799999999999 678888877 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA--AGFSVNVQTYESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 237 (423)
++|.++|++|.+ .|+.||..||+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998 89999999999999999999999999999999986 688999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 238 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHH
Q 014502 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDF 396 (423)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~ 396 (423)
+..+ |+.+|.+|++.|++++|.++|++|.+.|+.|+ ..+|+.||.+|++.|+.+ +.+++.+|...|+.||..||+.
T Consensus 683 d~~t--ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 683 GTVS--YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9998 99999999999999999999999999998775 999999999999999994 7899999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502 397 LVAGYRRAGLSGKLDSVINEMKFAEYM 423 (423)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 423 (423)
++.+|.+.|++++|.+++++|.+.|+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999873
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-55 Score=436.77 Aligned_cols=367 Identities=15% Similarity=0.186 Sum_probs=289.7
Q ss_pred CCCCccccHHHHHHHhcCCch-hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhH
Q 014502 33 NSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110 (423)
Q Consensus 33 ~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~ 110 (423)
..|+..+|+.++..+++.+.. .+.+++..|.+.|+.||..+||.+|.. ++.|++++|.++ |++|. .||..+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l----f~~m~---~~~~~t 191 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL----FDEMP---ERNLAS 191 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH----HhcCC---CCCeee
Confidence 345555666666666555533 335556666666666666666666666 455666666666 44443 256666
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 190 (423)
|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+ .|+.||..+|++||.+|+
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~-~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFVSCALIDMYS 270 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH-hCCCccceeHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666 667777778888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (423)
+.|++++|.++|++|. .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999886 568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 271 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
++++|.+.|+.||..+|++|+++|+++|++++|.++|++|.+ |+..+ ||.||.+|++.|+.++|.++|++|.+.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t--~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS--WNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999865 66666 999999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh-CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 351 GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
|+.|+ ..+|+.++.+|++.|..+ +.++|.+|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 421 g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 421 GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 98776 889999999999999995 6777878875 5889999999999999999999999999988874
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-54 Score=429.08 Aligned_cols=373 Identities=14% Similarity=0.160 Sum_probs=317.8
Q ss_pred CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHH------------
Q 014502 31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWR------------ 96 (423)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~------------ 96 (423)
.++.|+..+||.++..+++.+ ...+.++|++|. .||..+||++|.+ ++.|++++|.++|+.+
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 456677777777777777776 344577777764 4677777777777 5677777777773221
Q ss_pred -------------------HHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 014502 97 -------------------LDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS 156 (423)
Q Consensus 97 -------------------~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 156 (423)
+..+.+.+. ||..+|+.|+++|++.|++++|.++|++|.+ +|..+||++|.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 122223333 6777788899999999999999999999975 5899999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF 236 (423)
Q Consensus 157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 236 (423)
|++++|+++|++|.+ .|+.||..||++++.+|++.|++++|.+++++|.+.|+.||..+|++||++|++.|++++|.++
T Consensus 304 g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 304 GYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC
Q 014502 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK-CNQ 315 (423)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~ 315 (423)
|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+
T Consensus 383 f~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 99996 4788999999999999999999999999999999999999999999999999999999999999976 689
Q ss_pred CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcc-cHHHH
Q 014502 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATY 394 (423)
Q Consensus 316 ~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 394 (423)
.|+..+ |+.++++|++.|++++|.+++++| ++.|+ ..+|+.|+.+|...|+.+.++.+.+.+. +..| +..+|
T Consensus 459 ~p~~~~--y~~li~~l~r~G~~~eA~~~~~~~---~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y 531 (697)
T PLN03081 459 KPRAMH--YACMIELLGREGLLDEAYAMIRRA---PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNY 531 (697)
T ss_pred CCCccc--hHhHHHHHHhcCCHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcch
Confidence 999888 999999999999999999999876 35554 8899999999999999976554444443 3345 47799
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502 395 DFLVAGYRRAGLSGKLDSVINEMKFAEYM 423 (423)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 423 (423)
..|+..|++.|++++|.+++++|+++|+.
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999973
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-54 Score=435.34 Aligned_cols=374 Identities=17% Similarity=0.189 Sum_probs=273.1
Q ss_pred CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHH----------------------------------
Q 014502 31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWD---------------------------------- 75 (423)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~---------------------------------- 75 (423)
....|++.+||.++..+++.+ ..++.++|++|...|+.||..||+
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 344567777777777777777 345577777777667766666654
Q ss_pred -HHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 76 -ALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153 (423)
Q Consensus 76 -~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 153 (423)
++|.+ ++.|++++|.++ |++|. .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|
T Consensus 226 n~Li~~y~k~g~~~~A~~l----f~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 226 NALITMYVKCGDVVSARLV----FDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred hHHHHHHhcCCCHHHHHHH----HhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 44555 456677777777 55554 3677888888888888888888888888888888888888888888888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
++.|+.+.|.+++..|.+ .|+.||..+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 299 ELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHH
Confidence 888888888888888887 7888888888888888888888888888888886 56888888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.+.
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 89999998888889999999999999999999999999999888888888888888888888888888888888877542
Q ss_pred C------------------------------CCCchHH------------------------------------------
Q 014502 314 N------------------------------QSPEVLL------------------------------------------ 321 (423)
Q Consensus 314 ~------------------------------~~p~~~~------------------------------------------ 321 (423)
+ +.|+..+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 2 1222211
Q ss_pred ---------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHH
Q 014502 322 ---------------------HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLF 379 (423)
Q Consensus 322 ---------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 379 (423)
.+||++|.+|++.|+.++|.++|++|.+.|+.|+ ..+|+.++.+|++.|..+ +.++|
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHH
Confidence 1155555555555555555666666655555543 555555556666555553 45555
Q ss_pred HHHH-hCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 380 LDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 380 ~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
.+|. ..|+.|+..+|++++++|.+.|++++|.+++++|
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5555 3455556556666666666666666666665555
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-54 Score=434.62 Aligned_cols=373 Identities=17% Similarity=0.216 Sum_probs=310.1
Q ss_pred CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CC
Q 014502 31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SC 107 (423)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~ 107 (423)
.+..+++..+|.+++.+++.+ ...++++|++|. +||..+||++|.+ ++.|++++|.++ |++|...+. ||
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~----f~~M~~~g~~Pd 186 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCL----YHRMLWAGVRPD 186 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCC
Confidence 445688889999999999999 456799999996 6899999999999 799999999999 566766554 66
Q ss_pred HhHH-----------------------------------HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 108 LDEY-----------------------------------ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (423)
Q Consensus 108 ~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (423)
..+| +.|+.+|++.|+++.|.++|++|.+ ||..+||++|.+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~ 262 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISG 262 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHH
Confidence 5555 5666667777777777777777763 477788888888
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 232 (423)
|++.|++++|+++|++|.+ .|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 263 YFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 8888888888888888887 788888888888888888888888888888888888888888888888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999998886 4788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------------------C---------
Q 014502 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL------------------------------S--------- 353 (423)
Q Consensus 313 ~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------------------~--------- 353 (423)
.|..|+..+ |+.|+.+|++.|++++|.++|++|.+.+. .
T Consensus 418 ~g~~~~~~~--~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~l 495 (857)
T PLN03077 418 KGLISYVVV--ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAA 495 (857)
T ss_pred hCCCcchHH--HHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHH
Confidence 999888877 88888888888888888888877755321 1
Q ss_pred -------------------------------------------------------CCChHhHHHHHHHHhhcccc-chHH
Q 014502 354 -------------------------------------------------------FKSAEDVEMVICSYFRCAAY-DRLD 377 (423)
Q Consensus 354 -------------------------------------------------------~~~~~~~~~l~~~~~~~~~~-~~~~ 377 (423)
.++..+||+||.+|++.|+. ++.+
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH
Confidence 12345677777888888877 4678
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCC
Q 014502 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK-FAEY 422 (423)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~ 422 (423)
+|.+|...|+.||..||+.++.+|.+.|++++|.++|++|. +.|+
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888887 4554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3e-22 Score=206.49 Aligned_cols=321 Identities=13% Similarity=0.063 Sum_probs=199.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
...|++++|.+. ++.+....+.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 578 ~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 578 LGKGQLKKALAI----LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHCCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 345555555555 334444444455555555555555555555555555555432 224445555555555555666
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
+|..+|+++.+. .+.+..++..+...+...|++++|.++++.+.+.. ..+...+..+...+.+.|++++|.+.|+.+
T Consensus 653 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 653 KAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666655555541 12334555555556666666666666666655554 224555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+.. |+..
T Consensus 730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 804 (899)
T TIGR02917 730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNA 804 (899)
T ss_pred HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCH
Confidence 5543 444555566666666777777777776666643 3456666667777777777777777777776643 3322
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHH
Q 014502 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVA 399 (423)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~ 399 (423)
.. ++.+...+...|+ .+|+..+++..+ ..|+++..+..+...+...|+++ +.+.+.++++.+ +.++.++..+..
T Consensus 805 ~~-~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 879 (899)
T TIGR02917 805 VV-LNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLAL 879 (899)
T ss_pred HH-HHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Confidence 22 6677777777777 667777777766 34556777777777788888874 677777777654 337788888888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 014502 400 GYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 400 ~~~~~g~~~~a~~~~~~m~~ 419 (423)
++.+.|++++|.+++++|.+
T Consensus 880 ~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 880 ALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHhC
Confidence 88888888888888888753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=5.1e-21 Score=197.32 Aligned_cols=303 Identities=13% Similarity=0.060 Sum_probs=175.1
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
.+...+..+...+.+.|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+. .+.+...+..+
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 641 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL 641 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 334444444444444444444444444444321 224445555555555555555555555555431 12233444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
..++.+.|++++|.++|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 555555555555555555555443 1234555555555555556666665555555543 33445555566666666666
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
++|.+.++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. |+... .+..+...|...|++++|...|+
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~-~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAV-LRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHHCcCHHHHHHHHH
Confidence 66666666666543 333555556666666677777766666666533 33222 26666777777777777777777
Q ss_pred HHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
++.+. .|+++..++.+...+...|+.++...+.+.+... +-++.++..+..++.+.|++++|.++++++.+.+
T Consensus 795 ~~~~~--~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 795 TVVKK--APDNAVVLNNLAWLYLELKDPRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77763 3556777777777777777744566666555431 2345666777778888888888888888887654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.7e-21 Score=177.83 Aligned_cols=299 Identities=14% Similarity=0.068 Sum_probs=222.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc
Q 014502 80 SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCS 156 (423)
Q Consensus 80 ~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 156 (423)
....|++++|... +.++.+.++.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 45 ~~~~~~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDL----FIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHH----HHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3677888888888 5667666666777888888888888999999998888877532221 24677888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 014502 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLIHGSLKARDFDS 232 (423)
Q Consensus 157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~ 232 (423)
|++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999998888762 345667888888888888999999988888887654332 1235566777888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 988888887653 2345567777888888888888988888888754222245677788888888888888888888877
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh---cccc-chHHHHHHHHhCCCc
Q 014502 313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR---CAAY-DRLDLFLDHIKGSYK 388 (423)
Q Consensus 313 ~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~ 388 (423)
. .|+... +..+...+.+.|++++|..+++++.+. .|+ ...++.++..+.. .|+. ++...+.+++++++.
T Consensus 278 ~--~p~~~~--~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 278 E--YPGADL--LLALAQLLEEQEGPEAAQALLREQLRR--HPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred h--CCCchH--HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 4 355544 677888888888888888888888764 344 4566666665553 3344 467778888877777
Q ss_pred ccHH
Q 014502 389 LRRA 392 (423)
Q Consensus 389 p~~~ 392 (423)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 7665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=7.1e-21 Score=177.19 Aligned_cols=306 Identities=12% Similarity=0.050 Sum_probs=247.6
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTY 182 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~ 182 (423)
+...........+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.. .+..++ ..++
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~ 110 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLAL 110 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 333333334455678899999999999999874 23566899999999999999999999999987 321121 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEG 258 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~ 258 (423)
..+...|.+.|++++|.++|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 888999999999999999999998764 347889999999999999999999999999876533322 245567778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChh
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 338 (423)
+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.+ |+....+++.++.+|...|+++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHH
Confidence 889999999999999998864 3346678888899999999999999999998754 4433333888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh---cCChhHHHHHH
Q 014502 339 DVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR---AGLSGKLDSVI 414 (423)
Q Consensus 339 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~ 414 (423)
+|...++++.+.. |+ ...+..++..+.+.|+.+ +...+.+.+.. .|+..++..++..+.. .|+.+++..++
T Consensus 267 ~A~~~l~~~~~~~--p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 267 EGLEFLRRALEEY--PG-ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHhC--CC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 9999999998853 44 456688999999999995 67777777764 6888889888888775 56899999999
Q ss_pred HHHHhcCC
Q 014502 415 NEMKFAEY 422 (423)
Q Consensus 415 ~~m~~~g~ 422 (423)
++|..+++
T Consensus 342 ~~~~~~~~ 349 (389)
T PRK11788 342 RDLVGEQL 349 (389)
T ss_pred HHHHHHHH
Confidence 99988764
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.5e-18 Score=165.37 Aligned_cols=322 Identities=11% Similarity=0.025 Sum_probs=195.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
.+.|++++|..+ ++......+.+...+..++.+....|+++.|...|+++.+.. +.+...+..+...+...|+++
T Consensus 53 ~~~g~~~~A~~l----~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 53 LRKDETDVGLTL----LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HhcCCcchhHHH----hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 567777777777 445555555555566666666666777777777777776652 224456666666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
+|...+++..+. -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+
T Consensus 128 ~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 128 TVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 777777776652 1233455666666777777777777777766554333 22223222 2356667777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC
Q 014502 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE----LEEQLETLTKCNQS 316 (423)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~ 316 (423)
.+....++...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++ |...+++..+ ..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~ 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FN 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hC
Confidence 554322333444444556666777777777777776653 3345566666677777777664 6667776666 33
Q ss_pred CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccH-HHH
Q 014502 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRR-ATY 394 (423)
Q Consensus 317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~-~~~ 394 (423)
|+... ++..+...+...|++++|...+++..+ ..|.++..+..+..++.+.|+.+ +...+.+.... .|+. ..+
T Consensus 281 P~~~~-a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 281 SDNVR-IVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 54332 266666777777777777777777666 34556666666777777777764 45555555543 3332 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 395 DFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..+..++...|+.++|...|++..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445566677777777777766543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.2e-17 Score=159.75 Aligned_cols=328 Identities=10% Similarity=0.033 Sum_probs=262.0
Q ss_pred HHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC
Q 014502 43 LISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121 (423)
Q Consensus 43 ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 121 (423)
++-.+.+.| ...+..++......-+.+....+...+..+..|++++|.+. +++.....+.+...+..+...+.+.
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~----l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQV----VNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHH----HHHHHHhCCCChHHHHHHHHHHHHc
Confidence 455566666 44567888888776777766666666555889999999999 6777777777889999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 201 (423)
|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999998862 3357788999999999999999999999887522 2233333333 457889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 014502 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR----VKSFLKFLLG 277 (423)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~ 277 (423)
++.+.+....++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998877544455566666788999999999999999998765 3456778889999999999986 8999999988
Q ss_pred CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357 (423)
Q Consensus 278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 357 (423)
.. +.+...+..+...+.+.|++++|...+++..+. .|+.... +..+...|...|++++|...++++.+. .|.++
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a-~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV-RAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 63 345778899999999999999999999999984 4665433 777889999999999999999999874 35555
Q ss_pred HhHHHHHHHHhhccccc-hHHHHHHHHhC
Q 014502 358 EDVEMVICSYFRCAAYD-RLDLFLDHIKG 385 (423)
Q Consensus 358 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 385 (423)
..+..+..++...|+.+ +...+.+.+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55566678889999985 67777777654
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.2e-16 Score=134.52 Aligned_cols=372 Identities=16% Similarity=0.131 Sum_probs=272.3
Q ss_pred ccHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCC-----------
Q 014502 39 SSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGN----------- 104 (423)
Q Consensus 39 ~~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~----------- 104 (423)
+=|.|+.-+.+....+..-+++.|.+.|++-+...--.|+.- +.+.++.-+.+- | |-.|...+
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~--~-Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWE--E-FVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHH--H-Hhhcccccccccccccccc
Confidence 444455444444477788889999888888887766666655 344443322222 2 33333222
Q ss_pred ---------CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502 105 ---------ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175 (423)
Q Consensus 105 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 175 (423)
+.+..+|.+||.+.++....+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|.. ..+
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis-qkm 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS-QKM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH-hhc
Confidence 23677899999999999999999999999999888899999999997654332 2789999998 789
Q ss_pred CCCHHhHHHHHHHHHhcCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC
Q 014502 176 KPNSKTYDAFISGFSSLGNVD----AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS-VDRFYEEMMS----LGII 246 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~ 246 (423)
.||..|||+++++..+.|+++ .|.+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999999876 467888999999999999999999999999998865 4445555543 2222
Q ss_pred ---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 247 ---P-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKIN---ENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (423)
Q Consensus 247 ---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (423)
| |...|...++.|.+..+.+.|.++..-+.... +.|+ ...|..+....|.....+.-...++.|...-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 45678899999999999999999877665321 2333 23567788888999999999999999998877
Q ss_pred CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc-cc--c-------h-HHHHHHHH-
Q 014502 316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AY--D-------R-LDLFLDHI- 383 (423)
Q Consensus 316 ~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~--~-------~-~~~~~~~~- 383 (423)
-|+..+ ...++.+....|+++-..++|.+++..|...+ .+.-..++..+++.+ .. . + ++....+.
T Consensus 430 ~p~~~~--m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 430 FPHSQT--MIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred cCCchh--HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 788877 78888999999999999999999998875433 344444444444433 11 0 0 11111111
Q ss_pred --------hCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 384 --------KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 384 --------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
...........+.....+.+.|..++|.++|.-+...|
T Consensus 507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 01123345667888888999999999999999885544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.9e-15 Score=147.06 Aligned_cols=352 Identities=8% Similarity=-0.087 Sum_probs=256.7
Q ss_pred hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHH
Q 014502 53 SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF 131 (423)
Q Consensus 53 ~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (423)
..+...+..... ..|+...|..+-.+ ...|++++|++. +++..+..+.+..+|..+..+|...|++++|..-|
T Consensus 144 ~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~----~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 144 NKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVED----TTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345667776654 45666677766666 688999999999 56666666678889999999999999999998766
Q ss_pred HHHHHCCC----------------------------CC-CHHHHHHHHH------------------------------H
Q 014502 132 TSMEAQGI----------------------------KP-DSAVFNSLIC------------------------------A 152 (423)
Q Consensus 132 ~~m~~~g~----------------------------~p-~~~~~~~li~------------------------------~ 152 (423)
......+- .| +...+..+.. .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 54432110 00 0000000000 0
Q ss_pred H------HccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 153 C------LCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 153 ~------~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
. ...+++++|.+.|++..+.....| +...|..+...+...|++++|+..+++..+.... +...|..+...+.
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~ 376 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNL 376 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHH
Confidence 0 112578899999999887322334 3456788888899999999999999999876422 4668888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
..|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|..
T Consensus 377 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999987764 3456788889999999999999999999999864 3456677888899999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH-------HHHHHHHhhccccc-hHH
Q 014502 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-------EMVICSYFRCAAYD-RLD 377 (423)
Q Consensus 306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~~l~~~~~~~~~~~-~~~ 377 (423)
.++...+. .|+.... |+.+...+...|++++|++.|++..+.. |.+...+ +.....+...|+.+ +..
T Consensus 455 ~~~~al~~--~P~~~~~-~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 455 TFRRCKKN--FPEAPDV-YNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHh--CCCChHH-HHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99998874 3554332 8888999999999999999999988743 2222111 22222333457774 566
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+.+.+... +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666655542 33456788999999999999999999988653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=5.4e-17 Score=146.60 Aligned_cols=331 Identities=14% Similarity=0.139 Sum_probs=248.1
Q ss_pred hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-----------
Q 014502 71 QFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG----------- 138 (423)
Q Consensus 71 ~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g----------- 138 (423)
..+|+.+-..+ .+|++.+|+.. ++.+.+..+.....|..+..++...|+.+.|.+.|.+..+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~----y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALAL----YRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHH----HHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 44555555553 45556666665 444554444455556666666666666666655555554431
Q ss_pred ---------------------CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCH
Q 014502 139 ---------------------IKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNV 195 (423)
Q Consensus 139 ---------------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~ 195 (423)
..|. ...|..+.-.+-..|+...|++.|++..+ +.|+ ...|-.|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcc
Confidence 0121 22455555566667788888888887765 3455 34677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+.|...|.+....... ...+|..+...|...|+.|-|+..|++..+. .|+ ...|+.+..++-..|++.+|.+.+.+
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 8888888877765322 4667777778888899999999999988875 465 57899999999999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
.+... +......+.|...|.+.|.+++|.++|....+ +.|..... ++.|...|-..|++++|+..+++..+ +.|
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa-~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAA-HNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhh-hhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 99863 23455778899999999999999999999888 55765544 89999999999999999999999987 778
Q ss_pred CChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 355 KSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.-.++++.+...|...|+.+ ++.-+.+.+. +.|. .+.++-|...|..+|+..+|++-+++-.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 88999999999999999995 5777776665 3565 67889999999999999999999987654
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=4.3e-15 Score=155.36 Aligned_cols=326 Identities=10% Similarity=0.021 Sum_probs=204.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHH------------
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFN------------ 147 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~------------ 147 (423)
...|++++|... +++..+..+.|..++..+...+.+.|++++|...|++..+..... ....|.
T Consensus 280 ~~~g~~~~A~~~----l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 280 VDSGQGGKAIPE----LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 577888888888 455556666678888888888888888888888888887753221 111221
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL------- 220 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------- 220 (423)
.....+.+.|++++|+..|++..+. -+.+...+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 1234566788888888888888762 2334556677778888888888888888888765322 23222222
Q ss_pred -----------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 221 -----------------------------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 221 -----------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 233456688888888888877653 22355666777788888888
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------------------
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN------------------------------- 314 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------------------------- 314 (423)
++|...++++.+.. +.+...+..+...+...++.++|...++.+....
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 88888888877642 1223222222222333333333333333221100
Q ss_pred -------CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502 315 -------QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS 386 (423)
Q Consensus 315 -------~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 386 (423)
..|+... .+..+...+.+.|+.++|++.|++..+ ..|.++..+..++..+...|+.+ +.+.+......
T Consensus 591 eA~~~l~~~p~~~~-~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 591 EAEALLRQQPPSTR-IDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHhCCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 0122111 145566677777777777777777776 34666777777777777777774 44444433322
Q ss_pred CcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+.+...+..+..++.+.|++++|.+++++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 122355566667777777777777777777654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=6.7e-15 Score=153.91 Aligned_cols=320 Identities=9% Similarity=0.002 Sum_probs=196.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
...|++++|... +++.....+.+...+..+...+...|++++|++.|++..+... .+...+..+...|. .++.+
T Consensus 362 ~~~g~~~eA~~~----~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 362 LKANNLAQAERL----YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence 355666666666 3444444445556666666667777777777777766665421 12333333333332 12233
Q ss_pred HHHHHHHHHHhcCC-------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 161 TALSLFEIMVSSEE-------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 161 ~A~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
+|+.+++.+..... ..-....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 33333322211000 0000112344455555666666666666666554322 344555555566666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHH
Q 014502 234 DRFYEEMMSLGIIPSIPILE--------------------------------------------KVLEGLCARRKLDRVK 269 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~a~ 269 (423)
...+++..+.. +.+...+. .....+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66666554432 11121111 2234455566666666
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
++++. .+.+...+..+...+.+.|++++|...|+++.+. .|+.... +..+...|...|+.++|++.++...+
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a-~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADA-RLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66551 3445567778889999999999999999999985 4654332 88899999999999999999998876
Q ss_pred CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCC--cc---cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSY--KL---RRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
..|+++..+..+..++...|+.+ +.+.+.+.+...- .| +...+..+...+.+.|++++|...|++..
T Consensus 666 --~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 --TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred --cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667888888999999999995 6777776665321 22 23466677889999999999999998875
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=5.2e-16 Score=140.36 Aligned_cols=356 Identities=13% Similarity=0.078 Sum_probs=194.2
Q ss_pred HHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc
Q 014502 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120 (423)
Q Consensus 43 ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~ 120 (423)
|.+.+-+.+.....+....|.-. -.|+..--.-++++ ++..+.+....- -..-.+.+..-..+|..+.+.+..
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~-~d~t~~~~llll~ai~~q~~r~d~s~a~----~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQ-EDPTNTERLLLLSAIFFQGSRLDKSSAG----SLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhc-cCCCcccceeeehhhhhcccchhhhhhh----hhhhhhccchHHHHHHHHHHHHHH
Confidence 44556666655443444444211 12322222344555 344455544433 122223344567899999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH-HHHHHHhcCCHHHHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA-FISGFSSLGNVDAMN 199 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~ 199 (423)
.|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +...+-..|++.+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999987322 567899999999999999999999988876 3566554333 223333456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 200 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
..|.+..+.... =...|+.|...+-..|+...|++-|++..+. .|+ ...|-.+-..|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 666666554321 2345555555555566666666666555442 233 234444444454444444444444444432
Q ss_pred C--------------------------------CccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502 279 G--------------------------------WKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325 (423)
Q Consensus 279 g--------------------------------~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 325 (423)
. .+|+ ...|+.|..++-..|++.+|.+.+++.... .|+..-. .+
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hada-m~ 358 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADA-MN 358 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHH-HH
Confidence 1 1222 334555555555555555555555555442 2332221 34
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCccc-HHHHHHHHHHHHh
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLR-RATYDFLVAGYRR 403 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 403 (423)
.|...|...|.+++|..+|+...+ +.|.-....+.|...|.++|+. +++.-|.+.++ +.|+ ...|+-+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 455555555555555555555444 3333344445555555555555 34444444443 2444 3445555555555
Q ss_pred cCChhHHHHHHHHH
Q 014502 404 AGLSGKLDSVINEM 417 (423)
Q Consensus 404 ~g~~~~a~~~~~~m 417 (423)
.|+.+.|.+.+.+-
T Consensus 435 ~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRA 448 (966)
T ss_pred hhhHHHHHHHHHHH
Confidence 55555555554443
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=4.9e-14 Score=138.45 Aligned_cols=325 Identities=9% Similarity=-0.037 Sum_probs=244.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
++.|++++|+..| ++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|+++
T Consensus 138 ~~~~~~~~Ai~~y----~~al~~-~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 138 YRNKDFNKAIKLY----SKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHcCCHHHHHHHH----HHHHhc-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 6889999999995 444433 3678889999999999999999999999999863 225668999999999999999
Q ss_pred HHHHHHHHHHhcCCC---------------------------CCC-HHhHHHH---------------------------
Q 014502 161 TALSLFEIMVSSEEY---------------------------KPN-SKTYDAF--------------------------- 185 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~---------------------------~p~-~~~~~~l--------------------------- 185 (423)
+|+.-|.......+. .|. ...+..+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998766544321110 010 0000000
Q ss_pred ---HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 014502 186 ---ISGF------SSLGNVDAMNKWYAANIAAG-FSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILE 253 (423)
Q Consensus 186 ---i~~~------~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 253 (423)
+... ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+.. |+ ...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHH
Confidence 0000 11257889999999988764 223 45678888888999999999999999988753 54 56788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 333 (423)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .|+.... +..+...+.+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~-~~~la~~~~~ 445 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFS-HIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHH-HHHHHHHHHH
Confidence 88888999999999999999998863 345778999999999999999999999999884 4654433 7788889999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCc--c---cH-HHHHHHHHHHHhcCC
Q 014502 334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYK--L---RR-ATYDFLVAGYRRAGL 406 (423)
Q Consensus 334 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~ 406 (423)
.|++++|+..|++..+ ..|.++..++.+...+...|+++ +.+.+.+.+...-. + +. ..++.....+...|+
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987 45778999999999999999995 67777776653211 1 11 112222333445799
Q ss_pred hhHHHHHHHHHHh
Q 014502 407 SGKLDSVINEMKF 419 (423)
Q Consensus 407 ~~~a~~~~~~m~~ 419 (423)
+++|.+++++...
T Consensus 524 ~~eA~~~~~kAl~ 536 (615)
T TIGR00990 524 FIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=9.1e-14 Score=139.22 Aligned_cols=334 Identities=10% Similarity=-0.027 Sum_probs=222.9
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (423)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (423)
+..+... ...|++++|.+. +++.....+.+...+..+...+...|++++|...+++..+.. +.+.. +..+..+
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~----~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~ 125 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTL----WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHH
Confidence 4444444 466677777766 444444455556666666666667777777777777766652 22444 6666666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHH-----------------------------------
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVD----------------------------------- 196 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~----------------------------------- 196 (423)
+...|+.++|+..+++..+. .|+ ...+..+..++...+..+
T Consensus 126 l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 66777777777777766652 233 333334444444444443
Q ss_pred -----------HHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 014502 197 -----------AMNKWYAANIAA-GFSVNVQ-TYE----SLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEG 258 (423)
Q Consensus 197 -----------~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~ 258 (423)
+|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. .-..+...
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 455555555533 1222221 111 1133456779999999999999887632 332 22235778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCch-HHHH
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-----------SPEV-LLHF 323 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~-~~~~ 323 (423)
|...|++++|..+++++.+..... .......+..++.+.|++++|.++++.+..... .|+. ....
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987643111 134566677788999999999999999987531 1231 1122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYR 402 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 402 (423)
+..+...+...|+.++|+++++++.. ..|.++..+..+...+...|+.+ +.+.+.+.+.. .+-+...+...+..+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHH
Confidence 56678889999999999999999987 45778999999999999999996 56666655553 2334677788888999
Q ss_pred hcCChhHHHHHHHHHHhc
Q 014502 403 RAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 403 ~~g~~~~a~~~~~~m~~~ 420 (423)
+.|++++|..+++++.+.
T Consensus 439 ~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 999999999999998753
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=3.5e-13 Score=133.00 Aligned_cols=196 Identities=9% Similarity=-0.025 Sum_probs=154.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CccCHHhHHHHHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----WKINENMAQKLVKCYC 295 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~ 295 (423)
+-++...|++.++++.|+.|...+.+...++-..+.++|...+++++|..+++.+.... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 44667789999999999999988876667888999999999999999999999997643 2234444678899999
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 296 ELGRVDELEEQLETLTKCNQ-----------SPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~-----------~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
..+++++|..+++.+.+... .|+ .+...+..++..+...|++.+|++.++++.. ..|.++.....+
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~ 456 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIAL 456 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999987321 122 1112355678888999999999999999987 557789999999
Q ss_pred HHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
...+...|.+..++...+....-.+-+..+....+.++...|++++|..+.+...
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999654444455554434457778889999999999999988887664
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=5.2e-13 Score=116.19 Aligned_cols=340 Identities=14% Similarity=0.140 Sum_probs=210.1
Q ss_pred CcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 014502 68 NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146 (423)
Q Consensus 68 ~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 146 (423)
+.+..||.++|.+ |+-...++|.+++. +.-...+..+..+||.+|.+-.-..+ .++..+|....+.||..|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~k---E~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYK---EHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHH---HHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 4556778888888 77777888888852 22224445678888888776553333 6778888888888888888
Q ss_pred HHHHHHHHccCCHHH----HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----C
Q 014502 147 NSLICACLCSGDVVT----ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA-MNKWYAANIA----AGFSV----N 213 (423)
Q Consensus 147 ~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~ 213 (423)
|+++.+..+.|+++. |.+++.+|++ -|+.|+..+|..+|..+++.++..+ |..+..++.. ..++| |
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 888888888887654 4567777887 7888888888888888777776643 4444444433 22222 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPSI---PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 286 (423)
..-|...++.|.+..+.+-|.++-.-+... -+.|+. .-|..+....|.....+.....|+.|.-.-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 444566677777777777777766554432 123332 2355666667777777777778887777666677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC-Ch--------------------hHHHHHHH
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-RL--------------------DDVEYSVG 345 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~ 345 (423)
...++++..-.|+++-.-+++..++..|..-.... -.-++..+++.. ++ +.....-.
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l--~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL--REEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH--HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777777777666553322222 222222223222 11 11111223
Q ss_pred HHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCc----ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYK----LRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
+|...... +...+.+...+.+.|..+ +.+.+.-..+++.+ |......-+++.-.+.+....|...++-|...
T Consensus 514 R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 514 RQRAQDWP---ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHhccCC---hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34433332 666677777777777774 45555444344322 22333345566666777777777777776544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=8.5e-13 Score=132.31 Aligned_cols=334 Identities=9% Similarity=-0.020 Sum_probs=238.3
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 75 DALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153 (423)
Q Consensus 75 ~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 153 (423)
.-.+.. .-.|+.++|+++ +.+.......+...+..+...+...|++++|.++|++..+.. +.+...+..+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~----~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITV----YNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444 678999999988 566655455677789999999999999999999999988762 33577788899999
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
...|++++|+..+++..+. .+.+.. +..+..++...|+.++|+..+++..+..+. +...+..+...+...|..++|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999999873 234455 888888999999999999999999987544 555566666777666666655
Q ss_pred HHHHH----------------------------------------------HHHHC-CCCCCHH-HHH----HHHHHHHh
Q 014502 234 DRFYE----------------------------------------------EMMSL-GIIPSIP-ILE----KVLEGLCA 261 (423)
Q Consensus 234 ~~~~~----------------------------------------------~m~~~-~~~p~~~-~~~----~li~~~~~ 261 (423)
++.++ .+.+. ...|+.. .+. ..+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 54443 33321 1122211 111 11334556
Q ss_pred cCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcCChhH
Q 014502 262 RRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDD 339 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~ 339 (423)
.|++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+..... ......+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78899999999999887532 322 22225678889999999999999987643211 1111115566677889999999
Q ss_pred HHHHHHHHHhCCC-----------CCCC--hHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcC
Q 014502 340 VEYSVGRMGKQGL-----------SFKS--AEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405 (423)
Q Consensus 340 a~~~~~~m~~~~~-----------~~~~--~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 405 (423)
|...++++.+..- .|++ ...+..+...+...|+.+ +.+.+.+.+.. .+-+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 9999998886421 1111 234456777888888885 66666666554 3446778889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 014502 406 LSGKLDSVINEMKF 419 (423)
Q Consensus 406 ~~~~a~~~~~~m~~ 419 (423)
++++|++.+++...
T Consensus 408 ~~~~A~~~l~~al~ 421 (765)
T PRK10049 408 WPRAAENELKKAEV 421 (765)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988765
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.2e-12 Score=132.00 Aligned_cols=259 Identities=10% Similarity=-0.067 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHH
Confidence 34455555555554 5666666655555441 244333222333334566666666666665443 23333344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
..+.+.|++++|.+.++...+.. +.+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.+
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 55666666666666666665543 122222223333333446666666666666653 345556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFL 380 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 380 (423)
+|...+++.... .|+.... ++.+...+...|+.++|+..+++..+ ..|.++..+..+..++...|+.+ +...+.
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a-~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNY-QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666653 3444432 55555566666666666666666665 34555666666666666666664 344444
Q ss_pred HHHhCCCccc-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 381 DHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 381 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
+.+.. .|+ ..+.....+...+..+++.|.+-++.
T Consensus 702 ~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 702 LVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44332 233 34444445555555555555554443
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=4.6e-13 Score=123.96 Aligned_cols=281 Identities=9% Similarity=-0.016 Sum_probs=204.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH--HHHHHHHhcCCHHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSL-ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDA 197 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~ 197 (423)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+ ..|+...+. .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHH
Confidence 688888888887766542 233333333 4455788899999999988876 246654333 33567788899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~ 270 (423)
|.+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998887644 6778888888899999999999999998887654322 133334444444556667777
Q ss_pred HHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 271 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+.. |+... .++.+....++.+++.+..++..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l----~~l~~~l~~~~~~~al~~~e~~lk- 322 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL----VLLIPRLKTNNPEQLEKVLRQQIK- 322 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH----HHHHhhccCCChHHHHHHHHHHHh-
Confidence 77776543 34577788888899999999999999998888743 43322 234445566889999999988887
Q ss_pred CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 351 GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
..|+++.....+...+.+.++++ +.+.|...+.. .|+...|..+..++.+.|+.++|.+++++-.
T Consensus 323 -~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 323 -QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44778888889999999999996 45555555553 6888888899999999999999999988653
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.65 E-value=7.3e-12 Score=126.31 Aligned_cols=321 Identities=8% Similarity=-0.032 Sum_probs=238.6
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHccCC-
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-G-IKPDSAVFNSLICACLCSGD- 158 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~- 158 (423)
..+...++... +..|.+..+-|....--+.-...+.|+.++|.++|+..... + -.++...-+-++..|.+.+.
T Consensus 354 ~~~~~~~~~~~----~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 354 ATRNKAEALRL----ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred ccCchhHHHHH----HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 44677777777 45565555557777777777788899999999999988762 1 22345556677777777655
Q ss_pred --HHHHHHH----------------------HHHHHhcCCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014502 159 --VVTALSL----------------------FEIMVSSEEY-KP--NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211 (423)
Q Consensus 159 --~~~A~~~----------------------~~~m~~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 211 (423)
..++..+ ++......+. ++ +...|..+..++.. ++.++|...+.+.... .
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~ 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--Q 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--C
Confidence 3333222 2222221222 33 56677888877776 8889999988887765 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 56544444455557899999999999997654 4555566677788899999999999999999864 23333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 371 (423)
..+...|++++|...+++..+. .|+... |..+...+.+.|++++|+..+++..+ ..|+++..++.+...+...|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a--~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANA--YVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 4555669999999999999984 466444 88999999999999999999999988 56888999999999999999
Q ss_pred ccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 372 AYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+.+ +...+.+.+.. .+-++..+..+..++...|++++|...+++..+
T Consensus 658 ~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 658 DIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 995 56777666654 234578899999999999999999999998754
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=1.9e-11 Score=120.99 Aligned_cols=366 Identities=11% Similarity=0.033 Sum_probs=252.5
Q ss_pred cHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 014502 40 SNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117 (423)
Q Consensus 40 ~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~ 117 (423)
|...+.. .+.| ...+...|.+..+..+.-....+ .++.. ...|+.++|+.. +++..............+...
T Consensus 38 y~~aii~-~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~----~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLIIR-ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDV----YERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHH----HHHhccCCCCCHHHHHHHHHH
Confidence 3333333 4444 45668888887654444322344 55555 677999999999 455542222334444445678
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 197 (423)
+...|++++|.++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence 89999999999999999987433 5677888889999999999999999999863 5776666444444444666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------------
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE-------------------------------------- 239 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------------------------------------- 239 (423)
|++.++++.+.... +...+..+..++.+.|-...|.++..+
T Consensus 188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999998633 677778888888888766666554432
Q ss_pred ----------HHH-CCCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502 240 ----------MMS-LGIIPSI-PI----LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (423)
Q Consensus 240 ----------m~~-~~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 303 (423)
+.. .+-.|.. .. ..--+-++...|++.++++.++.+...|.+....+-..+.++|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 111 0111221 11 1233446677888999999999999888665666788889999999999999
Q ss_pred HHHHHHHHhCCC----CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CCCCh---HhHHHHHHH
Q 014502 304 EEQLETLTKCNQ----SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL----------SFKSA---EDVEMVICS 366 (423)
Q Consensus 304 ~~~~~~~~~~~~----~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------~~~~~---~~~~~l~~~ 366 (423)
..+++.+..... .|.... ....|.-+|...+++++|..+++++.+... ..+++ ..+..++..
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~-~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLL-DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHhhccccccCCCcchH-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999998866431 111111 146788888999999999999999887211 01112 223456777
Q ss_pred Hhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 367 YFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
+.-.|+.. +.+.+.++... -+-|......+.+.+...|.+.+|.+.++...
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 88888885 56666666443 35578888899999999999999999986654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=3.6e-12 Score=118.69 Aligned_cols=287 Identities=8% Similarity=-0.034 Sum_probs=191.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH--hHHHHHHHHHhcCCHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK--TYDAFISGFSSLGNVD 196 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~ 196 (423)
..|+++.|.+.+.+..+. .|++. .+-....++...|+++.|.+.+.+..+. .|+.. .--.....+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence 568888888888777665 34433 3334456677778888888888887652 24442 3333467777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 014502 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE-KVLEGL---CARRKLDRVKSFL 272 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~a~~~~ 272 (423)
.|.+.++.+.+..+. +..+...+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888887643 6667778888888888888888888888877643 333331 111111 2222333333344
Q ss_pred HHHHhCC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 014502 273 KFLLGGG---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF-SGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 273 ~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. |+.....+ ..........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4443321 12367788888888999999999999999888854 44331101 111222234567788888888877
Q ss_pred hCCCCCCCh--HhHHHHHHHHhhccccchHHHHHHH-HhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 349 KQGLSFKSA--EDVEMVICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 349 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
+ ..|+++ ....++...+.+.|+++.+..+.+. ......|+...+..+...+.+.|+.++|.+++++-
T Consensus 327 k--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 K--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred H--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6 446677 7778889999999999754444442 23234788888889999999999999999999874
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.9e-15 Score=130.54 Aligned_cols=252 Identities=20% Similarity=0.162 Sum_probs=73.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCC--CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGN--ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (423)
+..|++++|+++ +++..... +.|...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 19 ~~~~~~~~Al~~----L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 19 YQRGDYEKALEV----LKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 456666666666 32221222 224444444555555566666666666666654322 34445555554 45666
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 237 (423)
+++|.+++.+..+. .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.|
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666554431 2444455555666666666666666666654332 2335555555566666666666666666
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 014502 238 EEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS 316 (423)
Q Consensus 238 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (423)
++..+.. |+ ......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+..
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence 6665542 33 4455556666666666666666665555442 3344455556666666666666666666655522
Q ss_pred CchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
|+.... ...+.+++...|+.++|.++.++.
T Consensus 245 p~d~~~-~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLW-LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHH-HHHHHHHHT---------------
T ss_pred cccccc-cccccccccccccccccccccccc
Confidence 322221 445556666666666666665544
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.1e-15 Score=130.43 Aligned_cols=249 Identities=16% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 192 (423)
+...+.+.|++++|.++++...... .+-|...|..+...+...++++.|.+.++++... + +-+...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-ccc
Confidence 3445555555555555554332222 1123333444444444455555555555555541 1 1123334444444 455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSF 271 (423)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (423)
+++++|.++++...+. .++...+..++..+.+.++++++.++++...... ...+...|......+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555444332 1233444445555555555555555555544321 223344444555555555555555555
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 272 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
+++..+.. +.|......++..+...|+.+++.++++...+.. ..+... +..+..+|...|+.++|...|++...
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~la~~~~~lg~~~~Al~~~~~~~~-- 242 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL--WDALAAAYLQLGRYEEALEYLEKALK-- 242 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH--CHHHHHHHHHHT-HHHHHHHHHHHHH--
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH--HHHHHHHhcccccccccccccccccc--
Confidence 55555531 1124444455555555555555555554444432 111111 44455555555555555555555444
Q ss_pred CCCCChHhHHHHHHHHhhcccc
Q 014502 352 LSFKSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~~~~ 373 (423)
..|+||.....+..++.+.|+.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----
T ss_pred cccccccccccccccccccccc
Confidence 2233344444444444444444
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=5.3e-11 Score=110.30 Aligned_cols=291 Identities=10% Similarity=0.048 Sum_probs=214.1
Q ss_pred HHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH--
Q 014502 74 WDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDE-YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN-- 147 (423)
Q Consensus 74 ~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-- 147 (423)
...+..+ +..|+++.|.+. ....... .+++.. |.....+..+.|+++.|.+.|.++.+. .|+.....
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~----l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l 157 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKL----MTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI 157 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHH----HHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 3444555 567999999988 4443322 223333 333345558999999999999999875 55554333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHH
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESL 220 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l 220 (423)
.....+...|++++|...+++..+. -+-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..+
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3367888999999999999999872 2446678888999999999999999999999998755322 233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
+....+..+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. +++.... ++.+....++.
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~ 310 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNP 310 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCCh
Confidence 44444555666777777766443 2457788889999999999999999999999884 4555322 23344456999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHH
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLF 379 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 379 (423)
+++.+..+...+.. |+.... +..+...+...|++++|.+.|+...+. .|+ ...+..+...+.+.|+.+ +.+.+
T Consensus 311 ~~al~~~e~~lk~~--P~~~~l-~l~lgrl~~~~~~~~~A~~~le~al~~--~P~-~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 311 EQLEKVLRQQIKQH--GDTPLL-WSTLGQLLMKHGEWQEASLAFRAALKQ--RPD-AYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHHHHhhC--CCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988754 555432 678889999999999999999999984 444 777889999999999995 56666
Q ss_pred HHHHh
Q 014502 380 LDHIK 384 (423)
Q Consensus 380 ~~~~~ 384 (423)
.+-+.
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 65543
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.5e-11 Score=101.35 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=196.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCCHHHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSSLGNVDAM 198 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a 198 (423)
+.+.++|.++|-+|.+.. +-+..+--++.+.|-+.|.++.|+++-+.+.++.+..-+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357778888888887742 113334556777777888888888888887763221111 12334556667788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+.+|..+.+.+. --.....-|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+++.|..++++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888876542 24556677888888888888888888888776544432 2356666666677888888888888
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
..+.. +-....--.+.+.....|+++.|.+.++.+.+.+ |+....+...|..+|...|+.++....+.++.+....
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 87754 2233344456677888899999999999888855 6655555788888999999999988888888774332
Q ss_pred CChHhHHHHHHHHhhc-cccchHHHHHHHHhCCCcccHHHHHHHHHHHHh---cCChhHHHHHHHHHHhc
Q 014502 355 KSAEDVEMVICSYFRC-AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRR---AGLSGKLDSVINEMKFA 420 (423)
Q Consensus 355 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~ 420 (423)
+.....+...-... |..++...+.+.+.+ +|+...+..+++.-.. .|...+....++.|..+
T Consensus 282 --~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 --ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444444433333 333455555565554 7888888888876643 35566777777777643
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=6.4e-11 Score=110.35 Aligned_cols=295 Identities=10% Similarity=-0.012 Sum_probs=208.8
Q ss_pred hHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 014502 73 SWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS--AVFN 147 (423)
Q Consensus 73 ~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 147 (423)
....+..+ +..|++..|.+.+ .+..+..+.....+-....++.+.|+++.|.+.+++..+.. |+. ...-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l----~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~ 157 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLI----AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEI 157 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHH
Confidence 44556666 6899999999994 55444332234445566778889999999999999987653 444 3444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---H
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE-SLIH---G 223 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~---~ 223 (423)
.....+...|+++.|...++.+.+. -+-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-.. +
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 4578888999999999999999973 2446678889999999999999999999999998754 333332 1112 2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh-HHHHHHH--HHhc
Q 014502 224 SLKARDFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM-AQKLVKC--YCEL 297 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~--~~~~ 297 (423)
....+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 2333344444445555554321 1377888999999999999999999999999864 33331 1012222 2345
Q ss_pred CCHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-
Q 014502 298 GRVDELEEQLETLTKCNQSPEVL--LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD- 374 (423)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~- 374 (423)
++.+.+.+.++...+. .|+.. .. ..++...+.+.|++++|.+.|+........|+ +..+..+...+.+.|+.+
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~l-l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCI-NRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHH-HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHH
Confidence 7788899999888774 35554 32 56788889999999999999995333334454 666889999999999985
Q ss_pred hHHHHHHH
Q 014502 375 RLDLFLDH 382 (423)
Q Consensus 375 ~~~~~~~~ 382 (423)
+.+.+.+.
T Consensus 389 A~~~~~~~ 396 (409)
T TIGR00540 389 AAAMRQDS 396 (409)
T ss_pred HHHHHHHH
Confidence 56666554
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=1e-10 Score=101.43 Aligned_cols=285 Identities=9% Similarity=0.018 Sum_probs=210.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 200 (423)
.|++.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+ ..-.++...+-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 58888888888887776533 234556666777788888888888888876 2223445556666677888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 201 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
-++++.+.+.. +.........+|.+.|++.....+...|.+.|+--|. .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888887644 6777788888888899999988888888888765554 357777777776777777677777
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 014502 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 353 (423)
..... .+-++..-.+++.-+.++|+.++|.++.++..+.+.+|.... .-.+.+-++.+.-++..++-.. ..
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~------~~~~l~~~d~~~l~k~~e~~l~--~h 324 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR------LIPRLRPGDPEPLIKAAEKWLK--QH 324 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH------HHhhcCCCCchHHHHHHHHHHH--hC
Confidence 76554 445666677788888899999999999999888887776222 2345667777777777766655 33
Q ss_pred CCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 354 FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 354 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
|++|..+.+|..-|.+++.+..++.+.+.. -...|+..+|+.+..++.+.|+..+|.+..++-.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaA-l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAA-LKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556888889999999999886544444422 2347899999999999999999999988887643
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=1.3e-10 Score=110.38 Aligned_cols=328 Identities=11% Similarity=0.068 Sum_probs=248.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..|+.++|.++ +.++.+..+.+...|..|...|-+.|+.+++...+-..-... +-|...|-.+.....+.|.++
T Consensus 150 farg~~eeA~~i----~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEI----LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHH----HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 577999999999 567777777889999999999999999999998886655543 337789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT----YESLIHGSLKARDFDSVDRF 236 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~ 236 (423)
.|.-.|.+..+. -+++...+---...|-+.|+...|...|.++.......|..- --..+..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999872 244544444556788899999999999999998754323322 23445667778888999998
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CccCHHhHH
Q 014502 237 YEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG---------------------------WKINENMAQ 288 (423)
Q Consensus 237 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---------------------------~~~~~~~~~ 288 (423)
++..... +-..+...++.++..|.+...++.|......+.... ..++..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8887662 224556678888899999999999988888776621 22232331
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 368 (423)
.+.-++...+..+...-+.....+.+..|.....+|.-+.++|...|++.+|+.+|..+....... +...|-.+..+|-
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHH
Confidence 233455556666666666777777776677666679999999999999999999999998764433 3778899999999
Q ss_pred hccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 369 RCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 369 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
..|..+ |.+.|...+.. -+-+...--.|...+-+.|+.++|.+.+..|.
T Consensus 461 ~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999996 45555555443 23345666678888999999999999998764
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=5.9e-10 Score=106.00 Aligned_cols=362 Identities=11% Similarity=0.065 Sum_probs=271.9
Q ss_pred HhcCCchhHHHHHHHhhhccCCcChhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChh
Q 014502 47 LLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP 125 (423)
Q Consensus 47 l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (423)
.++....++.+++.+..+..+. ....|.+|-..+ +.|+..++...+ -.....++.|..-|..+.....+.|.++
T Consensus 150 farg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~----llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFW----LLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3443456778899888765443 356777777774 888999998883 3344556668899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HH----hHHHHHHHHHhcCCHHHHHH
Q 014502 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SK----TYDAFISGFSSLGNVDAMNK 200 (423)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~----~~~~li~~~~~~~~~~~a~~ 200 (423)
+|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.+.. +|. .. .--..++.+...++-+.|.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999874 3355555566778899999999999999998732 232 22 22345667778888899999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHH
Q 014502 201 WYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---------------------------IIPSIPIL 252 (423)
Q Consensus 201 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~ 252 (423)
.++..... +-..+...++.++..|.+..+++.|......+.... +.++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99887763 224467788999999999999999999888776622 22333331
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 330 (423)
-++-++.+.+..+....+...+...... .+...|.-+.++|...|++.+|.++|..+......-+ +.+|--+..+
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c 458 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARC 458 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHH
Confidence 2333445556666666666666666533 3456788899999999999999999999988543333 3349999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHH--------hCCCcccHHHHHHHHHHH
Q 014502 331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI--------KGSYKLRRATYDFLVAGY 401 (423)
Q Consensus 331 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~--------~~~~~p~~~~~~~l~~~~ 401 (423)
|...|..++|.+.|+.... ..|.+.+.--.|...+.+.|+.| +.+.+..+. ..++.|+...-......+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999988 55777888889999999999996 577776633 234567777777888999
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 014502 402 RRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 402 ~~~g~~~~a~~~~~~m~~~g 421 (423)
.+.|+.++-..+..+|...+
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDF 556 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 99999999888888776543
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.9e-10 Score=95.15 Aligned_cols=297 Identities=16% Similarity=0.157 Sum_probs=219.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH------HH
Q 014502 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS------AV 145 (423)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~ 145 (423)
..|-.=+..+-+.++++|++. |-.|.+...-+..+.-+|.+.|.+.|.+|+|+++.+.+.++ ||. ..
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdl----F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lA 109 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDL----FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLA 109 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHH----HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 345555666678899999999 56677766667778889999999999999999999999886 442 24
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLI 221 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li 221 (423)
.-.+..-|...|-+|.|+++|..+.+ .+ ..-......|+..|-...+|++|+.+-+++.+.+..+.. .-|.-+.
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~d-e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVD-EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhc-ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 45567788899999999999999987 22 223457788999999999999999999999987655432 2344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
..+....+++.|..++.+..+.+ +-.+..--.+-+.....|+++.|.+.++...+.....-..+...|..+|...|+.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 55666789999999999887654 22233444556678889999999999999999865555678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc----chHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY----DRLD 377 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~ 377 (423)
+....+..+.+....++... .+-+.-....-.+.|...+.+-.... | +...+..++......... +.+.
T Consensus 267 ~~~~fL~~~~~~~~g~~~~l----~l~~lie~~~G~~~Aq~~l~~Ql~r~--P-t~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 267 EGLNFLRRAMETNTGADAEL----MLADLIELQEGIDAAQAYLTRQLRRK--P-TMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred HHHHHHHHHHHccCCccHHH----HHHHHHHHhhChHHHHHHHHHHHhhC--C-cHHHHHHHHHhhhccccccchhhhHH
Confidence 99999999988665555433 33333334445566666665555432 3 377788888776654433 3466
Q ss_pred HHHHHHhC
Q 014502 378 LFLDHIKG 385 (423)
Q Consensus 378 ~~~~~~~~ 385 (423)
.+.+|+..
T Consensus 340 ~lr~mvge 347 (389)
T COG2956 340 LLRDMVGE 347 (389)
T ss_pred HHHHHHHH
Confidence 66666543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.1e-11 Score=112.13 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHH
Q 014502 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTA 162 (423)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A 162 (423)
+..+|... |.+.......+..+...+..+|...+++++|+++|+.+.+... .-+.++|.+.+.-+-+ +-+
T Consensus 334 ~~~~A~~~----~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 334 NCREALNL----FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHH----HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence 45667777 4444333334456677788888888888888888888876521 1156677776654322 122
Q ss_pred HHHHH-HHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 163 LSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 163 ~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
+..+. ++.. --+-...+|-++.++|.-.++.+.|++.|++....+.. ...+|+.+.+-+....++|+|...|+...
T Consensus 406 Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22222 2222 11234568888888888888888888888888765322 67888888888888888888888887765
Q ss_pred HCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 014502 242 SLGIIPSIPILE---KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318 (423)
Q Consensus 242 ~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 318 (423)
. .|...|+ -+...|.+.++++.|.-.|+.+.+.. +-+.+....+...+-+.|+.|+|.++++++...+ |.
T Consensus 483 ~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~k 555 (638)
T KOG1126|consen 483 G----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PK 555 (638)
T ss_pred c----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CC
Confidence 3 4444444 45566788888888888888888743 2345556667778888888888888888887643 33
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502 319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
....-| .....+...++.++|+..++++++ +.|.+...+..+...|.+.|+.+ ++..|--+..
T Consensus 556 n~l~~~-~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 556 NPLCKY-HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CchhHH-HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 332213 235556778888888888888887 66777778888888888888775 5555555544
No 39
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.7e-13 Score=85.93 Aligned_cols=49 Identities=35% Similarity=0.613 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2e-10 Score=101.39 Aligned_cols=247 Identities=9% Similarity=0.019 Sum_probs=137.1
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCC
Q 014502 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGN 194 (423)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~ 194 (423)
.++....+.+++.+-.+.+...|++-+...-+....+.-...++++|+.+|+++.+...... |..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34455567777777777777888776776666666777778889999999998887322221 34566554432211111
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+.++.+-.-.--+--+.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1111111100001123445555555555566666666666555443 22234455555556666666666666666
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
.++.. +-|-..|-.|..+|.-.+...-|.-.|++..+ ..|+.... |.+|-++|.+.++.++|++.|++....|-.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRl-w~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRL-WVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHH-HHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 65542 33555566666666666666666666665555 33443322 666666666666666666666665554432
Q ss_pred CChHhHHHHHHHHhhcccc
Q 014502 355 KSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~ 373 (423)
+...+..|...|.+.++.
T Consensus 465 -e~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDL 482 (559)
T ss_pred -chHHHHHHHHHHHHHHhH
Confidence 355566666666665555
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=5.3e-11 Score=109.54 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=211.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK-PNSKTYDAFISGFSSLGNVDAMNKW 201 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~ 201 (423)
+.++|...|+.+++.- .-+..+...+..+|...+++++|.++|+..++..... -+...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 5678899998876652 2234566778899999999999999999998743222 256678887754432 222333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 202 Y-AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 202 ~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 279 (423)
+ +++.+.. +-++.+|.++.++|.-+++.+.|++.|++.... .| ..++|+.+-.=+....++|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 3 2333333 337899999999999999999999999998765 45 67899999888899999999999999887632
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh
Q 014502 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359 (423)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 359 (423)
+-+-..|.-+.-.|.+.++++.|+-.|+++.+ +.|..... ...+...+.+.|+.++|++++++... ..|.+|-.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi-~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~ 559 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVI-LCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLC 559 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhH-HhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchh
Confidence 11233555577889999999999999999988 55765543 56777888999999999999999987 44556666
Q ss_pred HHHHHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 360 VEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 360 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
--.-+..+...++. +++..+.+..+ -++-+...|..+...|.+.|+.+.|+.-|.-+.+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE-LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 65666666666766 56777766554 2334577799999999999999999987766543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=3.2e-10 Score=109.71 Aligned_cols=148 Identities=8% Similarity=-0.091 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
+++|...+++..+. -+-+...+..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555554431 0123334444444444455555555555555444321 33344444444555555555555555
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 239 EMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 239 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (423)
+..+.. |+ ...+..++..+...|++++|...++++.+...+.+...+..+..++...|+.++|...++++.
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 544432 22 111122222333344555555555544433211122233334444445555555555554443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.9e-10 Score=100.11 Aligned_cols=327 Identities=13% Similarity=0.075 Sum_probs=174.9
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+...+.+|++.++-.+++...-+. ......+.+.-.+.+.|+++.|...|+...+. .|+..+--.++-++..-|+-+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH
Confidence 444556677765544444433222 23455666666677888888888888887765 567665555556666678888
Q ss_pred HHHHHHHHHHhcCCCCCCHHh--------HHHHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCCHH------
Q 014502 161 TALSLFEIMVSSEEYKPNSKT--------YDAFISGFSSLGNV-----------DAMNKWYAANIAAGFSVNVQ------ 215 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~--------~~~li~~~~~~~~~-----------~~a~~~~~~m~~~~~~~~~~------ 215 (423)
+..+.|.+|....| .||..- -..|++--.+...+ ++++-.-..+..--+.|+-.
T Consensus 327 kmkeaf~kli~ip~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPG-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHhcCCC-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 88888888765222 222111 11122211111111 11111111111111112110
Q ss_pred -------HH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------------------
Q 014502 216 -------TY--------ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL------------------------ 256 (423)
Q Consensus 216 -------~~--------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li------------------------ 256 (423)
.| -.-...|.+.|+++.|+++++-+.+++.+.-...-+.+-
T Consensus 406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 00 011235677888888877776665433221111111000
Q ss_pred ------------HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 014502 257 ------------EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324 (423)
Q Consensus 257 ------------~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 324 (423)
+.....|++++|.+.+++.+...-......|+ +.-.+-..|++++|.+.|-++.. +-.+.... .
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~ev-l 561 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEV-L 561 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHH-H
Confidence 00122467888888888877764333333443 33345667777777777766543 11111111 3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-------------------------------
Q 014502 325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY------------------------------- 373 (423)
Q Consensus 325 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------- 373 (423)
-.+...|....+..+|++++-+... +.|++|.....|...|-+.|+.
T Consensus 562 ~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 4455666666666666666654433 5566666666666666665543
Q ss_pred ---ch-HHHHHHHHhCCCcccHHHHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 014502 374 ---DR-LDLFLDHIKGSYKLRRATYDFLVAGYR-RAGLSGKLDSVINEMKF 419 (423)
Q Consensus 374 ---~~-~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 419 (423)
+. ...|.+ ..-+.|+..-|..++..|. +.|++.+|++++++...
T Consensus 640 qf~ekai~y~ek--aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 640 QFSEKAINYFEK--AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 21 222211 1235899999998886664 68999999999998754
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=3.5e-13 Score=84.50 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=28.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.8e-10 Score=98.08 Aligned_cols=302 Identities=10% Similarity=0.098 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCHhHH-HHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHH-
Q 014502 85 SPKKAQLVLEWRLDKMLKGNESCLDEY-ACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVV- 160 (423)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~- 160 (423)
..+++++- .+.....|.|+..-+ +....+.-..+++++|+.+|+++.+...- -|..+|..++-.--...+..
T Consensus 242 q~~e~~~k----~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 242 QHEEALQK----KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHH----HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 56666666 455556666654444 44444455678999999999999886311 15667777665433322221
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.|..+++ . ++.+| .|..++.+-|+-.++.++|..+|++.++.+.. ....|+.+.+-|....+...|++-|+..
T Consensus 318 LA~~v~~-i---dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 318 LAQNVSN-I---DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHH-h---ccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222221 1 33344 46777888888889999999999998887643 6778888889999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
.+-. +.|-..|-.+.++|...+-+.-|+-.|++..... +-|...|.+|.++|.+.++.++|...|......|-. +..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 8764 5667788899999999999999999999988853 457889999999999999999999999988876533 223
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCChHhH---HHHHHHHhhccccchHHHHHHHHhCCCcccHHH
Q 014502 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGK----QGLSFKSAEDV---EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRAT 393 (423)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 393 (423)
. +..|.+.|-+.++.++|...|++-.+ .|.. ++.+. ..|..-+.+.++++.+..+......| .+..+-
T Consensus 468 ~--l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~--~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~ee 542 (559)
T KOG1155|consen 468 A--LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI--DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEE 542 (559)
T ss_pred H--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHH
Confidence 3 88899999999999999888876654 3433 23333 34567777888888777777776666 666666
Q ss_pred HHHHHHHHHhcC
Q 014502 394 YDFLVAGYRRAG 405 (423)
Q Consensus 394 ~~~l~~~~~~~g 405 (423)
-..|++.+.+..
T Consensus 543 ak~LlReir~~~ 554 (559)
T KOG1155|consen 543 AKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHhc
Confidence 777777766543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=3.7e-09 Score=92.00 Aligned_cols=286 Identities=13% Similarity=0.056 Sum_probs=212.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..|++.+|.+. ..+..+.+..-...|..-..+..+.|+.+.+-+++.+.-+..-.++....-+........|+++
T Consensus 95 l~eG~~~qAEkl----~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 95 LFEGDFQQAEKL----LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HhcCcHHHHHHH----HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 678999999988 4554455544556677777788888999999999998888644567777888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a 233 (423)
.|..-+.++.+ . -+-+........++|.+.|++.+...++..|.+.|.--+. .+|+.+++-....+..+.-
T Consensus 171 aA~~~v~~ll~-~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLE-M-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHH-h-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 99988888876 2 2445667888889999999999999999999988865543 4788888877777777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
...++..... .+-++..-.+++.-+.+.|+.++|.++.++..+.+..|... ..-.+.+.++.+.-.+..++-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh
Confidence 6666665432 24556667777888888999999999999998887766521 222445667777767776665543
Q ss_pred -CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502 314 -NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 314 -~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
+..| .++.+|-..|.+.+.|.+|.+.|+...+.+. +...|+.+..++.+.|+.+ +.+...+.+.
T Consensus 324 h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 HPEDP----LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3333 2277888889999999999999998777543 3888999999999999885 4555555443
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.2e-10 Score=97.29 Aligned_cols=200 Identities=13% Similarity=0.100 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 4556666677777777777777777766542 224556666677777777777777777766652 1334455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777777777777777776654221 133455556667777777777777777766543 223456666677777777777
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777665 234455555666677777777777777666654
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.5e-10 Score=96.39 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3556677777777778888888877777652 1334556666777777778888888887777765432 455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
..+...|++++|.+.+++.......+ ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 77777788888888777776542222 23455566667777788888888777777653 23455666777777777888
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
++|...+++..+. .|+.... +..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT--YNQTAES-LWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8887777777664 2322221 45666777777777777777776654
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=8e-10 Score=106.97 Aligned_cols=265 Identities=10% Similarity=0.007 Sum_probs=186.5
Q ss_pred cChhhHHHHHHH---H---hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh---------cCCChhHHHHHHHH
Q 014502 69 SSQFSWDALITS---L---QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG---------KVQNVPFAMHVFTS 133 (423)
Q Consensus 69 p~~~~~~~li~~---~---~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~ 133 (423)
.+...|...+.+ . ..++.++|.+. +++..+..+.+...|..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~----~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKL----LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHH----HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 445566666666 1 22345678888 56666666667777777766543 33558999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213 (423)
Q Consensus 134 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (423)
..+... -+...+..+...+...|++++|...|++..+. -+.+...+..+...+...|++++|...+++..+.... +
T Consensus 330 Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 330 ATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 998743 26778888889999999999999999999872 1334567888889999999999999999999987544 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHH
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLV 291 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li 291 (423)
...+..++..+...|++++|...+++..+.. .|+ ...+..+...+...|+.++|...++++... .|+ ....+.+.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~ 482 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLY 482 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHH
Confidence 3333444555777899999999999987654 343 445677778888999999999999987664 334 34455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 292 KCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
..|...| +.|...++.+.+.. ..+.... + +-..|.-.|+.+.+... +++.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~--~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPG--L--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCch--H--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6667777 47777777765522 1122211 2 33446667777766665 7777654
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.6e-09 Score=100.88 Aligned_cols=294 Identities=12% Similarity=0.090 Sum_probs=183.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDS------AVFNSLI 150 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~~~~~li 150 (423)
+..+++-.++..+..+.+.+...+. +-+...|.+...+...|++++|...|...... -..+|. .+--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 5666666666666555544444443 45666777777777777777777777766554 112222 2233344
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 229 (423)
.++-..++++.|.+.|..+.+. -|+- ..|--+....-..+...+|..++.+..... ..+...++.+.+.+.+..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 5555566777777777777652 2442 233333323333456677777777766653 3355556666667777777
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502 230 FDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCA------------RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 230 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 296 (423)
+..|.+-|+...+. ...+|.++...|.+.|.. .+..++|+++|.+.++.. +-|...-|-+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 77777766665442 223666666666665432 234567777777777753 3456666677777788
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-c
Q 014502 297 LGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-D 374 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 374 (423)
.|++.+|..+|.++.+... .++. |-.+..+|...|++..|+++|+...+.-...+++...+.|..++.+.|.+ +
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv----~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDV----WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCce----eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 8888888888888877544 2333 55677888888888888888877766555556677778888888888877 3
Q ss_pred hHHHHHHHH
Q 014502 375 RLDLFLDHI 383 (423)
Q Consensus 375 ~~~~~~~~~ 383 (423)
+.+.+...+
T Consensus 735 ak~~ll~a~ 743 (1018)
T KOG2002|consen 735 AKEALLKAR 743 (1018)
T ss_pred HHHHHHHHH
Confidence 444444433
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1.6e-07 Score=86.79 Aligned_cols=363 Identities=10% Similarity=0.022 Sum_probs=269.6
Q ss_pred HHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHh
Q 014502 43 LISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSG 119 (423)
Q Consensus 43 ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~ 119 (423)
|.-++++.-. ..+..++....+ .++.+...|-+--.- -.+|+.+...+++...+..+...|. -+...|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 4445555542 334556666543 456666666444443 4778888888887766666666666 57888888888888
Q ss_pred cCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKP--DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 197 (423)
+.|.+-.+..+......-|+.- -..+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..++
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 8888888888888887777643 2358888888899999999999999988862 34456677777777677888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
...+|++....-. .....|-.....+-..|++..|..++...-+.. +-+...|-.-+..-....+++.|..+|.+...
T Consensus 569 l~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 9999999887743 356667777778888899999999998887754 23567788888888899999999999998887
Q ss_pred CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357 (423)
Q Consensus 278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 357 (423)
. .|+..+|..-+...-..++.++|.+++++..+ .-|+..-. |-.+-+.+...++.+.|.+.|..-.+ ..|..+
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~i 719 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTK--KCPNSI 719 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH-HHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCc
Confidence 4 47888887777777778999999999998887 34554432 77888888888899999888876554 446778
Q ss_pred HhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
..|-.+...-.+.|..-.+....+.....-+-|...|-..|..-.+.|+.++|..+..+-
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888877744443333333333556788999999999999999988776544
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.1e-08 Score=98.39 Aligned_cols=368 Identities=12% Similarity=0.071 Sum_probs=206.3
Q ss_pred ccHHHHHHHhcCC-chhHHHHHHHhhhccCCcCh--hhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCC-HhHHHH
Q 014502 39 SSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQ--FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYAC 113 (423)
Q Consensus 39 ~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~--~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~-~~~~~~ 113 (423)
..|.|-+.+-..+ -..++.+...+......... .+|--+-.+ ...|++++|...| + +-.+....+ +..+--
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY---~-~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY---M-ESLKADNDNFVLPLVG 347 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH---H-HHHccCCCCccccccc
Confidence 3333433333333 33445555555433221111 223333444 4666667666664 2 222222222 334455
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 189 (423)
|...+.+.|+++.+...|+...+.. +-+..+...+...|+..+ ..+.|..++.+..+. .+.|...|-.+-..+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH
Confidence 6666666667777666666666542 223445555555555543 344455555544431 133444454444444
Q ss_pred HhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHH-------HHH--
Q 014502 190 SSLGNVDAMNKWYAA----NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---GIIPSIP-------ILE-- 253 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~-------~~~-- 253 (423)
...+-+.. +.+|.. +...+-.+.....|.+.......|++++|...|+..... ...+|.. -||
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33333222 444433 223344456666777777777778888888777766543 1122221 122
Q ss_pred ------------------------HHHHHHHhc-------CCHHHHHHHHHHHHhCC-C---------------------
Q 014502 254 ------------------------KVLEGLCAR-------RKLDRVKSFLKFLLGGG-W--------------------- 280 (423)
Q Consensus 254 ------------------------~li~~~~~~-------g~~~~a~~~~~~~~~~g-~--------------------- 280 (423)
..|++|.+. +...+|...+++..... .
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 223333333 34445555555443211 0
Q ss_pred -------------ccCHHhHHHHHHHHH------------hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502 281 -------------KINENMAQKLVKCYC------------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 281 -------------~~~~~~~~~li~~~~------------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 335 (423)
.+|..+.-+|.+.|. ..+..++|.+.|.++.+.. |...- +-|.+.-.++..|
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~y-AANGIgiVLA~kg 660 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMY-AANGIGIVLAEKG 660 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhh-hccchhhhhhhcc
Confidence 123333333333332 1234567888888887743 43221 1567777889999
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCC-cccHHHHHHHHHHHHhcCChhHHHHH
Q 014502 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSY-KLRRATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 336 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
++.+|.++|.+..+.... .+++|-.+.++|..+|++ .+++.|...+..-+ .-+......|..++.+.|.+.+|.+.
T Consensus 661 ~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred CchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999987652 488999999999999999 57888887776543 34678899999999999999999988
Q ss_pred HHHHHh
Q 014502 414 INEMKF 419 (423)
Q Consensus 414 ~~~m~~ 419 (423)
+..-..
T Consensus 739 ll~a~~ 744 (1018)
T KOG2002|consen 739 LLKARH 744 (1018)
T ss_pred HHHHHH
Confidence 765543
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=4.7e-10 Score=106.32 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=45.8
Q ss_pred CCCCCCccccHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHh
Q 014502 31 NTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLD 109 (423)
Q Consensus 31 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~ 109 (423)
.|+-|+..||-+++.++|..|...+..+|.-|.-.....+...|+.++.+ -..++.+.+ ..|...
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enp--------------kep~aD 84 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENP--------------KEPLAD 84 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCC--------------CCCchh
Confidence 45566666666666666666655554466666555555555555565555 333332221 135566
Q ss_pred HHHHHHHHHhcCCChhH
Q 014502 110 EYACLIALSGKVQNVPF 126 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~ 126 (423)
+|..|..+|.+.||+..
T Consensus 85 tyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHHhccchHH
Confidence 66666666666666543
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=1.9e-10 Score=108.98 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=154.3
Q ss_pred HHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502 97 LDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175 (423)
Q Consensus 97 ~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 175 (423)
+..+...|+ |+..||.++|.-|+..|+++.|- +|.-|.-+..+.+...++.++.+....++.+.+.
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ 79 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------ 79 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------
Confidence 556666666 88899999999999999999888 8888888877888888999999888888877765
Q ss_pred CCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCCCHHHH--------------HHHHHHHHhcCCHHHHH
Q 014502 176 KPNSKTYDAFISGFSSLGNVDA---MNKWYAANI----AAGFSVNVQTY--------------ESLIHGSLKARDFDSVD 234 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~~~~~~~--------------~~li~~~~~~g~~~~a~ 234 (423)
.|...||+.|..+|...||+.. +.+-+.... ..|+..-...+ .+.+.-..-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999998754 222121111 12221111111 11222233334444455
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 235 RFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 235 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
+++..+.... ..|... +++-+.... ....++........-.|+..+|.+++++-...|+.+.|..++.+|++.
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 4444432211 011111 233322222 222333333222211477778888888888888888888888888888
Q ss_pred CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (423)
|+..+..- |-.|+-+ .+...-++.+.+-|.+.|+.|+ ..++...+..+..+|.
T Consensus 234 gfpir~Hy--FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~-seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHY--FWPLLLG---INAAQVFEFVLRGMQEKGVQPG-SETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCccccc--chhhhhc---CccchHHHHHHHHHHHhcCCCC-cchhHHHHHhhhcchh
Confidence 77655543 3333333 6777777778888888888765 6666655555555544
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=8.1e-10 Score=93.39 Aligned_cols=227 Identities=12% Similarity=0.042 Sum_probs=109.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhH-HHHHHHHH
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY-DAFISGFS 190 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~~~ 190 (423)
+.+.++|.+.|-+.+|.+.|+.-.+. .|-+.||-.+-++|.+..++..|+.++.+-.+. .|-.+|| .-+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 34455555555555555555554443 344445555555555555555555555555431 2322332 22334444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502 191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (423)
..++.++|.++|+...+... -++....++..+|.-.++++-|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|.++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 45555555555555554431 1344444444455555555555555555555553 334445555545555555555555
Q ss_pred HHHHHHhCCCccCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 271 FLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 271 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
-|.+.+..--+|+. .+|-.+.......|++..|.+.|+-....+ ++.... +|.|.-.-.+.|++++|..++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ea-lnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEA-LNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHH-HHhHHHHHhhcCchHHHHHHHHHhh
Confidence 55555443333332 234444444444555555555555544422 222211 4444444455555555555555444
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=4.4e-09 Score=97.70 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=160.2
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CC
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQ-----GI-KPDSA-VFNSLICACLCSGDVVTALSLFEIMVSS----EE-YK 176 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~ 176 (423)
.+...+...|...|+++.|+.++.+..+. |. .|... ..+.+...|...+++++|..+|+++... .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566888999999999999998887654 21 22222 3445667788888999888888887641 11 11
Q ss_pred CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC
Q 014502 177 PN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GF-SVNV-QTYESLIHGSLKARDFDSVDRFYEEMMS---LGI 245 (423)
Q Consensus 177 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~ 245 (423)
|. ..+++.|-..|.+.|++++|...+++..+. |. .|.+ ..++.+...|+..+++++|..+++...+ .-+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 346677777888899988887777765431 11 1222 2355666778888888888888876543 112
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 014502 246 IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G--WKINENMAQKLVKCYCELGRVDELEEQLETLT--- 311 (423)
Q Consensus 246 ~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--- 311 (423)
.++ ..+++.+...|...|++++|.+++++++.. | ..-....++.+...|.+.+++++|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 246888888888888888888888887542 1 11123456777788888888888888887643
Q ss_pred -hCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 312 -KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 312 -~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
..|..-...+.+|..|...|...|++++|+++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3343332333448888888888888888888877665
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-09 Score=92.04 Aligned_cols=229 Identities=8% Similarity=0.019 Sum_probs=187.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY-ESLIHGS 224 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~ 224 (423)
-+.+.++|.+.|.+.+|.+.|+.-.++ .|-..||-.|-+.|.+..+...|+.++.+-.+. .|-.+|| .-+.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 467889999999999999999988763 577888988999999999999999999998876 4445554 4455777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 304 (423)
-..++.++|.++|+...+.. ..++....++...|.-.++++.|+.++++++..|+. ++..|..+.-+|.-.+++|-+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999987764 456777888888899999999999999999999975 7788888888888899999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHH
Q 014502 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI 383 (423)
Q Consensus 305 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 383 (423)
.-|+.....-..|+....+|-.+-......|++.-|.+.|+-....+ +++..+++.|.-.-.+.|+.+.++.+....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99988877666666666567778888888999999999998887754 456888888888888888887655554443
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.21 E-value=8.2e-07 Score=82.34 Aligned_cols=295 Identities=9% Similarity=-0.044 Sum_probs=129.4
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...|......--..|..+....+|++.... ++-....|-....-+-..|++..|..++.+.-+ . .+-+...|-.-+
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~-~-~pnseeiwlaav 625 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE-A-NPNSEEIWLAAV 625 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-h-CCCcHHHHHHHH
Confidence 3444444444444444444444444444433 111233333444444444444444444444443 1 112333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKL 265 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~ 265 (423)
..-....+++.|..+|.+.... .|+...|.--++.-.-.+..++|.+++++..+. -|+- ..|..+-..+-+.+++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 4444444444444444444432 233333433333333344444444444444332 2332 2233333344444444
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
+.|.+.|..-.+. ++.....|-.|.+.--+.|.+-.|..+++...-++ |..... |-..|..-.+.|..++|..+..
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~l-wle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALL-WLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchh-HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444433332 22233344444444444444555555555444433 222211 4455555555555555555544
Q ss_pred HHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 346 RMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+..+. -|.+...|..-|....+.++. .....+. ...-|+.....+...+....++++|.+-|.+-.+
T Consensus 778 kALQe--cp~sg~LWaEaI~le~~~~rkTks~DALk-----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 778 KALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALK-----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHh--CCccchhHHHHHHhccCcccchHHHHHHH-----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44432 133344444444443333321 1111111 1234566666777777777888888888776654
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2e-06 Score=76.91 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCcc
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGL---CARRKLDRVKSFLKFLLGGGWKI 282 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~~~~~g~~~ 282 (423)
|-.+|--.++.--..|+.+...++|++...+ ++|-. +.|..+=-+| ....+.+.+.++++..++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 3344444444445557777777777776554 23321 1111111111 2356777777777777763 555
Q ss_pred CHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502 283 NENMAQKLVKCYC----ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (423)
Q Consensus 283 ~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 358 (423)
...||..+--+|+ ++.++..|.+++-..+- ..|...+ |..-|..-.+.++++.+..++++..+. .|.+-.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~Kl--Fk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~ 472 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKL--FKGYIELELQLREFDRCRKLYEKFLEF--SPENCY 472 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhH--HHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH
Confidence 5556655544443 46777788888876654 5577766 888888889999999999999999984 466677
Q ss_pred hHHHHHHHHhhccccchHHHHHHHHhCCCc--ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYK--LRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
+|......-...|+.+.+..+++.....-. .....|...|+.-...|.++.|..+++.+.+.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 887777777788899876666666543211 12445778888888999999999999988754
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=1.3e-07 Score=88.98 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=166.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHc----
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN-SLICACLC---- 155 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~---- 155 (423)
...|++++|++. ++.-....+............+.+.|+.++|..+|..+.+++ |+...|. .+..+..-
T Consensus 15 ~e~g~~~~AL~~----L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 15 EEAGDYEEALEH----LEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHCCCHHHHHHH----HHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 467888899888 444333333445667778888888899999999999888874 4555444 44444422
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 156 -SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 156 -~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ + +|+.|-..|....+.+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence 23567778888888762 35555554444334332333 3455666677777753 3 456666666666555556
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHh
Q 014502 234 DRFYEEMMSL----G----------IIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCE 296 (423)
Q Consensus 234 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 296 (423)
.+++...... + -.|+. .++.-+...|...|++++|++++++.++. .|+ +..|..-.+.|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666655432 1 12333 24455566777888888888888888875 344 5677777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
.|++++|.+.++.....+. -|... =+-.+..+.++|+.++|.+++......+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~-~DRyi--NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL-ADRYI--NSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh-hhHHH--HHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888888888888887543 22332 45567777888888888888888776654
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=6.8e-08 Score=85.46 Aligned_cols=279 Identities=11% Similarity=0.005 Sum_probs=186.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCC-CHhHHHH--HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNES-CLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~-~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++.|+.+.|++++ .-..+.... -+..-+. ++..+.--+++..|.+.-+...... .-+......-......+|
T Consensus 430 lk~~d~~~aieil----kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 430 LKNGDIEGAIEIL----KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HhccCHHHHHHHH----HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 5777888887774 322222221 1112222 2222223446777777666655321 112222222223334578
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 237 (423)
++++|.+.|++... ....-....||+ .-.+-..|++++|+.+|-.+...- .-+..+..-+.+.|-...+...|++++
T Consensus 505 d~dka~~~ykeal~-ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALN-NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHc-CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999998886 211111223332 234667899999999988765432 226667777788888888999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 238 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
.+.... ++-|+.....+...|-+.|+-.+|.+.+-+--.. ++.+..+...|...|....-++++...|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 554332 3446778888899999999999998887665544 667788888888888888889999999998765 678
Q ss_pred chHHHHHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch
Q 014502 318 EVLLHFFSGIIRLY-ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375 (423)
Q Consensus 318 ~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 375 (423)
+..- |..++..| .+.|++++|.+++++..+. -|.+.+....|+..+...|..++
T Consensus 658 ~~~k--wqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 658 NQSK--WQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred cHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccchhH
Confidence 8877 88877655 4678999999999998763 35568888888888888776543
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.1e-07 Score=88.42 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 391 RATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
..+|.-|...|.+.|+++.|.++.+...
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4567777777777777777777766553
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.1e-07 Score=77.08 Aligned_cols=191 Identities=15% Similarity=0.069 Sum_probs=144.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..|++..|.+- +++.++..+.+..+|..+...|.+.|+.+.|.+.|++....... +-.+.|.....+|..|+++
T Consensus 46 L~~gd~~~A~~n----lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 46 LQQGDYAQAKKN----LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHCCCHHHHHHH----HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChH
Confidence 688888888888 56677777777888888888888888888888888888775322 5567788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
+|...|++.........-..||..+.-+..+.|+.+.|...|++-.+.... ...+.-.+.....+.|++-.|..+++..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 888888888774333344567888888888888888888888888776533 4455666777778888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
...+. ++..+.-..|..--..|+.+.+.++=.++.+.
T Consensus 200 ~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 200 QQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred Hhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 76664 77777777777777788888877776666653
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=2.3e-07 Score=82.45 Aligned_cols=196 Identities=13% Similarity=-0.028 Sum_probs=122.0
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFI 186 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 186 (423)
...|..+...+.+.|+.++|...|++..+... .+...|+.+...+...|++++|...|++..+ +.|+ ..+|..+.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg 139 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 45577777778888888888888888877632 2567888888888888888888888888876 2343 55677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.++...|++++|.+.|+...+.. |+..........+...++.++|.+.|++..... .|+...+ .+ .....|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCC
Confidence 77778888888888888877653 332212222223345667888888886654322 2332221 12 222344444
Q ss_pred HHHHHHHHHHhC---CC--c-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 267 RVKSFLKFLLGG---GW--K-INENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 267 ~a~~~~~~~~~~---g~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
.+ +.+..+.+. .. . .....|..+...+.+.|++++|...|++..+.+
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43 233444321 11 1 122456677777778888888888888777643
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4e-07 Score=82.92 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=215.4
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
++.....-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 45555666677778899999999999988763 556677777788999999988888887888863 355667898888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI-IPSIPILEKVLEGLCARR 263 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g 263 (423)
-.|...|...+|.++|.+....+.. =...|-...++|.-.|+.|+|+..|...-+. |. .| ..|. ---|.+.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LYl--gmey~~t~ 394 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLYL--GMEYMRTN 394 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHHH--HHHHHHhc
Confidence 8888889999999999987755322 3467888889999999999999888766442 21 22 2332 23477889
Q ss_pred CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK----CNQSPEVLLHFFSGIIRLYALSDRLDD 339 (423)
Q Consensus 264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~ 339 (423)
+.+.|.++|.+.... .+-|+.+.+-+.-...+.+.+.+|..+|+.... .+.....+..+++.|-.+|.+.+..++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999998876 355777888887777778899999999988662 111111344458889999999999999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 014502 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYR 402 (423)
Q Consensus 340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 402 (423)
|+..+++... ..|.++.++.++.-.|...|..+ |++.|.+.+. ..||..+-..++..+.
T Consensus 474 AI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999887 55778999999999999999996 6888887775 4677666555555444
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=2e-07 Score=82.80 Aligned_cols=224 Identities=12% Similarity=0.012 Sum_probs=144.8
Q ss_pred HhcCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502 118 SGKVQNVPFAMHVFTSMEAQG-IKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 194 (423)
....++.+.++.-+.++.... ..|+ ...|......|...|+.++|...|++..+. -+.+...|+.+...+...|+
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCC
Confidence 344566777888887777542 2222 345777777888888888888888888762 23456788888888888889
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+++|.+.|++..+.... +..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...+++
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99988888888876433 46677778888888888898888888887653 4432222222233456778888888876
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc---hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-QSPE---VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
..... .++...+ .+ .....|+...+ +.++.+.+.. ..+. .....|..+...+.+.|++++|...|++..+.
T Consensus 191 ~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55432 3332221 22 22335555444 3444444211 1111 11223778888888888888888888888764
Q ss_pred C
Q 014502 351 G 351 (423)
Q Consensus 351 ~ 351 (423)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 3
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2.1e-07 Score=75.38 Aligned_cols=200 Identities=16% Similarity=0.125 Sum_probs=129.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
+...|.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4555666777777777777777777776533 56677777777777777777777777766643 223445666666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 339 (423)
..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|+...+.. |+.... .-.+.....+.|++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~-~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPA-LLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChH-HHHHHHHHHhcccchH
Confidence 777777777777777664211 123456666666677777777777777776643 332221 4556666777777777
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCC
Q 014502 340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY 387 (423)
Q Consensus 340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (423)
|...++.....+. + +..+.-..|..-...|+.++...|...+...+
T Consensus 192 Ar~~~~~~~~~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 192 ARLYLERYQQRGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHhccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777766554 2 36666666666667777776666666665543
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.08 E-value=3.9e-07 Score=85.85 Aligned_cols=260 Identities=12% Similarity=0.110 Sum_probs=155.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH-HHHHh
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI-SGFSS 191 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~~~ 191 (423)
.....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+. .|+...|-..+ .+..-
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhh
Confidence 3445567788888888888775543 3324456677778888888888888888888873 35555554444 44322
Q ss_pred -----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 192 -----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 192 -----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
..+.+...++|+++...- |.......+.-.+....++. .+...+..+...|+++ +|+.+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 224677778888776653 44444444433333323333 3445566667777543 556666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CccCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502 266 DRVKSFLKFLLGG----G----------WKINEN--MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (423)
Q Consensus 266 ~~a~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 329 (423)
+-..+++...... + -+|... ++.-+...|...|++++|..++++.++. .|+..- .|..-..
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e-ly~~Kar 236 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE-LYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH-HHHHHHH
Confidence 5555555554422 1 123332 3344566677788888888888887773 465433 2777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502 330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS 386 (423)
Q Consensus 330 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 386 (423)
.|-+.|++++|.+.++...+-+. .|-..=+..+..+.++|+.+ +.+.+....+.+
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 78888888888888888777443 22222244566677777775 344443333433
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-06 Score=78.67 Aligned_cols=192 Identities=8% Similarity=0.025 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 296 (423)
|--+...|....+.++.++.|++..+.+ +-+..+|..=.....-.+++++|..=|++.+... +-+...|-.+..+.-+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 5555566777777777777777766544 3344555555555666677777777777776642 1233455555555566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------ChHhH--HHHHHHHh
Q 014502 297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK------SAEDV--EMVICSYF 368 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~--~~l~~~~~ 368 (423)
.++++++...|++.+++- |+.... |+.....+...+++++|.+.|+..++ +.|. ++..+ ..++..--
T Consensus 441 ~~k~~~~m~~Fee~kkkF--P~~~Ev-y~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF--PNCPEV-YNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCchH-HHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch
Confidence 777888888888777643 433322 77777888888888888888877765 2222 11111 11111111
Q ss_pred hcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 369 RCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 369 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
+ ++. .+.+++.+.++.. +-....|..|...-.+.|+.++|+++|++-
T Consensus 516 k-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred h-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 333 2445554444321 222456899999999999999999999874
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=5.1e-06 Score=76.40 Aligned_cols=155 Identities=9% Similarity=0.012 Sum_probs=78.8
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHh
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL----CSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSS 191 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~ 191 (423)
.+...|++++|.+.+++..+.. +.+...+.. ...+. ..+..+.+.+.+... ....|+. .....+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHH
Confidence 3445666677777666666542 223333332 11222 233344444444331 1122322 233344455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSI--PILEKVLEGLCARRKLDRV 268 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a 268 (423)
.|++++|.+.+++..+.... +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666665422 445556666666666666666666666554321 1222 2234455556666666666
Q ss_pred HHHHHHHHh
Q 014502 269 KSFLKFLLG 277 (423)
Q Consensus 269 ~~~~~~~~~ 277 (423)
..++++...
T Consensus 206 ~~~~~~~~~ 214 (355)
T cd05804 206 LAIYDTHIA 214 (355)
T ss_pred HHHHHHHhc
Confidence 666666543
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.1e-06 Score=77.09 Aligned_cols=237 Identities=10% Similarity=0.025 Sum_probs=178.0
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 196 (423)
.+.-.|+.-.|..-|+........+ ...|--+...|...++.++....|++..+.. +.|..+|..=.+...-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence 3445688889999999988864332 2237777888999999999999999988633 345667777777788889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (423)
+|..=|++....... +...|--+-.+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999998877543 6777877778888999999999999998775 34456788989999999999999999999887
Q ss_pred hCCCccC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 277 GGGWKIN---------ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 277 ~~g~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
+. .|+ +.+.-+++-.- =.+++..|..++++..+ +.|..... |..|...-.+.|+.++|+++|++-
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A-~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQA-YETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHH-HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 63 232 22222222222 24889999999999988 44554443 889999999999999999999987
Q ss_pred HhCCCCCCChHhHHHHHHHHhhc
Q 014502 348 GKQGLSFKSAEDVEMVICSYFRC 370 (423)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~ 370 (423)
.. . ..+-.-++++|.-+
T Consensus 564 a~--l----Art~~E~~~a~s~a 580 (606)
T KOG0547|consen 564 AQ--L----ARTESEMVHAYSLA 580 (606)
T ss_pred HH--H----HHhHHHHHHHHHHH
Confidence 65 2 44445555555443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=2.9e-06 Score=78.05 Aligned_cols=261 Identities=12% Similarity=-0.004 Sum_probs=163.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHH---HHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC---LIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCS 156 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 156 (423)
...|++++|.+.+ ++.....+.|...+.. ........+..+.+.+.++. ..+..|+ ......+...+...
T Consensus 54 ~~~g~~~~A~~~~----~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 54 WIAGDLPKALALL----EQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHcCCHHHHHHHH----HHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 6889999999994 5555555556655552 22222335566666666655 1222333 34555667788999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHH
Q 014502 157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNV--QTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a 233 (423)
|++++|...+++..+. .+.+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|
T Consensus 128 G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 128 GQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred CCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999872 244566788888999999999999999999887532 2232 3455788889999999999
Q ss_pred HHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--ccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 234 DRFYEEMMSLGI-IPSIPIL-E--KVLEGLCARRKLDRVKSF--LKFLLGGGW--KINENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 234 ~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
..+|++...... .+..... + .++.-+...|..+.+.++ ......... ............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999864332 1222222 1 223333444544433333 111111111 1111222346667788999999999
Q ss_pred HHHHHHhCCCCC--c----hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 306 QLETLTKCNQSP--E----VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 306 ~~~~~~~~~~~p--~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.++.+....... . ..+...-...-.+...|+.++|.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999886633220 0 1111122233445688999999998888765
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=3.7e-07 Score=76.71 Aligned_cols=326 Identities=12% Similarity=0.125 Sum_probs=212.5
Q ss_pred hHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 014502 73 SWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL-I 150 (423)
Q Consensus 73 ~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i 150 (423)
-+++.|.. .+..++.+|.+++. .-.+..+.+....+.|..+|-...++..|-..++++... -|...-|... .
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~----s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLG----SELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHH----HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 35566666 67888999999953 333344457788889999999999999999999999875 4555555432 3
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG--FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
..+-+.+.+.+|+++...|.. .|+...-..-+.+ ....+++..+..++++....| +..+.+.......+.|
T Consensus 86 QSLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 566778999999999998875 2443322222222 235688888888888876433 3444455555567899
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-------------CHH--------h
Q 014502 229 DFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI-------------NEN--------M 286 (423)
Q Consensus 229 ~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-------------~~~--------~ 286 (423)
+++.|.+-|+...+- |..| ...|+..+ +..+.|+++.|++...++++.|++. |.. .
T Consensus 159 qyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 999999999988764 5544 56777666 4456789999999999998877531 211 1
Q ss_pred HHHHHH-------HHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502 287 AQKLVK-------CYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (423)
Q Consensus 287 ~~~li~-------~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 358 (423)
-+.++. .+.+.|+++.|.+.+-.|..+. ...|+.|. .|..+ . -..+++.+..+-+.-+.+. .|-.+.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL-HN~Al-~-n~~~~p~~g~~KLqFLL~~--nPfP~E 311 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL-HNQAL-M-NMDARPTEGFEKLQFLLQQ--NPFPPE 311 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh-hHHHH-h-cccCCccccHHHHHHHHhc--CCCChH
Confidence 222333 4467889999998888886432 23344442 23221 1 1244555555555555543 343489
Q ss_pred hHHHHHHHHhhccccc-hHHHHHHHHhCCCc-ccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 359 DVEMVICSYFRCAAYD-RLDLFLDHIKGSYK-LRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 359 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
+|..++-.||++.-++ +++++.+....-+. .+...|+.+=....-.-..++|++-++.+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999998886 56766554332222 345556544333334567788887776653
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.4e-07 Score=81.27 Aligned_cols=266 Identities=9% Similarity=0.001 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220 (423)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 220 (423)
-+......-.+-+-..+++.+..++++...+. .++....+..=|.++.+.|+..+-..+=.+|.+.-+. ...+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 35555666667777889999999999999873 4566667777788999999998888888888877433 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHHhHHHHHHHHHhc
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINENMAQKLVKCYCEL 297 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~ 297 (423)
..-|.-.|+.++|.+.|.+.... .|. ...|-....+|+-.|+.|+|...+...-+. |.. -+..| +.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHh
Confidence 99898899999999999877543 333 457888899999999999999998887654 221 22334 34467889
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCChHhHHHHHHHHhhccc
Q 014502 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ----G-LSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~~l~~~~~~~~~ 372 (423)
++++.|.+.|.+... +.|+.... .+-+--.....+.+.+|...|+..... + -.+....+++.|.++|.+.+.
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv-~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLV-LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchh-hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999998876 66765543 677766677788999999999887631 1 011124457889999999999
Q ss_pred cc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 373 YD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 373 ~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
.+ ++..+++.+.. .+.|..+|.++.-.|...|+++.|.+.|.+-.
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 95 67777777654 35689999999999999999999999998754
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-05 Score=71.33 Aligned_cols=31 Identities=13% Similarity=-0.155 Sum_probs=18.3
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 136 (423)
.|+.....+.+.+...|+.++|+..|++...
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 4555556666666666666666666655544
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=3e-05 Score=73.63 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 366 (423)
|......+.+.+..++|...+.+..+ +.|..... |...-..+...|++++|.+.|..... +.|+++.+.+++...
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~-~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV-YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH-HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 33445556666777777767766665 33433322 66666777888999999999998877 778899999999999
Q ss_pred Hhhccccc-hHH--HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 367 YFRCAAYD-RLD--LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 367 ~~~~~~~~-~~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
+.+.|+.. +.. .+.++++-+ +.++..|..+...+.+.|+.++|.+.|..-.
T Consensus 728 lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999774 333 666776653 5579999999999999999999999887643
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=3.2e-05 Score=69.50 Aligned_cols=324 Identities=11% Similarity=0.079 Sum_probs=194.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
.+++++..|..+ |+..+.....+...|-.-+.+=.+++.+..|..+|++.... ++.-...|...+..=-..|++.
T Consensus 84 esq~e~~RARSv----~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 84 ESQKEIQRARSV----FERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HhHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccH
Confidence 466777788888 45555555567777877888888888888888888887764 1222235556666566678888
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.|.++|+.-.+ ..|+...|.+.|+.-.+-+.++.|..+|++..-. .|++.+|-....-=-++|+...|..+|+..
T Consensus 159 gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 88888887765 4688888888888888888888888888887753 577777777777667777777777777665
Q ss_pred HHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------------
Q 014502 241 MSL-GI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG---------------------------------------- 278 (423)
Q Consensus 241 ~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------------------- 278 (423)
.+. |- ..+...|.+...-=.+...++.|.-+|+-.++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 542 10 011112222222222333444444444433321
Q ss_pred ---CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH--------HHHHHHHhcCChhHHHHHHHHH
Q 014502 279 ---GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS--------GIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 279 ---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~--------~li~~~~~~g~~~~a~~~~~~m 347 (423)
.-+.|-.+|--.++.-...|+.+...++++..+.+ +.|...-..|. ..+-.-....+++.+.++|+..
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 01233445555566666677777778888777663 23322111111 1122223556777777777777
Q ss_pred HhCCCCCCChHhHHHHHHHHh----hccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 348 GKQGLSFKSAEDVEMVICSYF----RCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+ +.|...-+|..+=-.|+ ++.+.. +-+++-..+ |.-|-..+|...|..-.+.+++|.+.+++++..+
T Consensus 393 l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 393 LD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred Hh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66 55544455543322222 233332 233333322 4567777777777777777777777777777654
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=9.7e-08 Score=83.73 Aligned_cols=242 Identities=10% Similarity=0.037 Sum_probs=110.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 199 (423)
-.|++..++.-.+ .....-+.+......+.+++...|+++.+ +.++.. +-.|.......+...+...++-+.++
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~--~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKK--SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhcc--CCChhHHHHHHHHHHHhCccchHHHH
Confidence 3455555554443 11111111233344455666666665533 233332 11444444444443333323333343
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 200 KWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 200 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
.-+++.......+ +..........+...|++++|++++.. + .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3333332222121 222112222344455666666665532 1 33455555666666666666666666666653
Q ss_pred CCccCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 279 GWKINENMAQKLVKCYC----ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 279 g~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
..|.. ...+..++. -.+++.+|..+|+++... ..++..+ .+.+..+....|++++|.+++.+..+ ..|
T Consensus 161 --~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~--lng~A~~~l~~~~~~eAe~~L~~al~--~~~ 232 (290)
T PF04733_consen 161 --DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKL--LNGLAVCHLQLGHYEEAEELLEEALE--KDP 232 (290)
T ss_dssp --SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHH--HHHHHHHHHHCT-HHHHHHHHHHHCC--C-C
T ss_pred --CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHH--hcc
Confidence 23332 222333222 223466666666666543 2233333 56666666666667666666666554 334
Q ss_pred CChHhHHHHHHHHhhcccc-chHHHHHH
Q 014502 355 KSAEDVEMVICSYFRCAAY-DRLDLFLD 381 (423)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 381 (423)
.++++...++.+....|+. +..+.+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5566666666666666655 44443333
No 79
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.3e-09 Score=60.34 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=7.1e-05 Score=69.83 Aligned_cols=334 Identities=15% Similarity=0.121 Sum_probs=198.6
Q ss_pred ChhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (423)
Q Consensus 70 ~~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (423)
+.+.|.++--.. ...++++|++. +......+..|...|.-+.-.-++-|+++.......++.+.. +.....|..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKc----y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~ 148 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKC----YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIG 148 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHH----HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHH
Confidence 345555443333 34567777777 445555566677777776666667777777777766666642 224557788
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI------SGFSSLGNVDAMNKWYAANIAAGFSVNVQTY-ESLI 221 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li 221 (423)
+..++.-.|++..|..++++..+...-.|+...|.... ....+.|..++|.+.+..-...- .|-..+ .+-.
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka 226 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHH
Confidence 88888888999999999998887433356666654333 33456677777777766544321 122222 2334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-HHHHHHHHHH-------------------------
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE-GLCARRK-LDRVKSFLKF------------------------- 274 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~-~~~a~~~~~~------------------------- 274 (423)
..+.+.+++++|..+|..+.... ||...|...+. ++.+..+ .+....+|..
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 56778899999999999988764 77666554443 3332222 2222233333
Q ss_pred ---------HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH--------hCC----------CCCchHHHHHHHH
Q 014502 275 ---------LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT--------KCN----------QSPEVLLHFFSGI 327 (423)
Q Consensus 275 ---------~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~----------~~p~~~~~~~~~l 327 (423)
+.+.|+++ ++..+...|-.....+ +++++. ..| -.|....-++-.+
T Consensus 305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 33344332 2222222222111111 222221 111 1333333124567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCCh
Q 014502 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS 407 (423)
Q Consensus 328 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (423)
+..|-..|+++.|...++...+. .|.-+..|-.=...+...|+.+.+..+.+....-..||...=..-..-..++++.
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 88899999999999999988763 3444555555578888999986544444444444466766554566666788999
Q ss_pred hHHHHHHHHHHhcC
Q 014502 408 GKLDSVINEMKFAE 421 (423)
Q Consensus 408 ~~a~~~~~~m~~~g 421 (423)
++|.++....-..|
T Consensus 456 ~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 456 EEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999888876665
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.9e-05 Score=69.66 Aligned_cols=278 Identities=13% Similarity=0.032 Sum_probs=194.8
Q ss_pred cCCcC-hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 014502 66 AFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS 143 (423)
Q Consensus 66 g~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 143 (423)
..-|+ +.....+-.. +..|+.++|... |++.+..++-+...-..-.-.+.+.|+++....+-..+.... +-+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~----Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta 300 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDI----FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA 300 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHH----HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch
Confidence 33444 4444555555 689999999999 566555554333333333444567888888888777776541 1244
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 223 (423)
..|-.-........++..|+.+-++..+.. +.+...|-.-...+...+++++|.-.|....... +.+...|..|+.+
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 455555555667789999999998887621 2233445444477888999999999999877653 2378999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL-EGL-CARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRV 300 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 300 (423)
|...|.+.+|.-+-+...+. ++.+..+.+.+- ..| ....--++|.++++.-+.. .|+ ....+.+...+...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCcc
Confidence 99999999998766654432 123444554442 222 2234457899999888774 455 33566777888999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 360 (423)
+++..+++.... ..||... .+.|.+.+...+.+++|++.|....+ +.|.+..+.
T Consensus 455 ~D~i~LLe~~L~--~~~D~~L--H~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl 508 (564)
T KOG1174|consen 455 KDIIKLLEKHLI--IFPDVNL--HNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTL 508 (564)
T ss_pred chHHHHHHHHHh--hccccHH--HHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHH
Confidence 999999999887 5688877 89999999999999999999999887 455544433
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=3.9e-09 Score=59.42 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014502 138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 138 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 169 (423)
|+.||..+||++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.85 E-value=4.5e-05 Score=71.10 Aligned_cols=221 Identities=11% Similarity=-0.009 Sum_probs=131.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+.-|+.++|.+. ...-....+.+.+.|+.+.-.+...+++++|.+.|......+- -|..+|.-+-..-++.|+++
T Consensus 52 ~~lg~~~ea~~~----vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 52 NCLGKKEEAYEL----VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hcccchHHHHHH----HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhh
Confidence 466777777777 4445555556677777777777777778888887777776542 25666666666666677777
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHhcCCHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIH------GSLKARDFDSV 233 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~------~~~~~g~~~~a 233 (423)
.....-.+..+. .+-....|..+..++.-.|+...|..+.++..+.. -.|+...|.-... ...+.|.+++|
T Consensus 127 ~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 127 GYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 776666666652 12233456666667777777788887777777654 2455555544332 23455666666
Q ss_pred HHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-HHHHHHHhcCCHHHHH-HHHHHH
Q 014502 234 DRFYEEMMSLGIIPSIPI-LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-KLVKCYCELGRVDELE-EQLETL 310 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~a~-~~~~~~ 310 (423)
.+-+.+-... ..|... -..-...+.+.+++++|..++..++.. .||..-|. .+..++.+..+.-++. .+|...
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6655443221 223222 333445566778888888888887775 35554443 3444444333333333 555544
Q ss_pred Hh
Q 014502 311 TK 312 (423)
Q Consensus 311 ~~ 312 (423)
.+
T Consensus 281 s~ 282 (700)
T KOG1156|consen 281 SE 282 (700)
T ss_pred hh
Confidence 43
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.0001 Score=68.03 Aligned_cols=360 Identities=10% Similarity=0.015 Sum_probs=203.9
Q ss_pred HHHHHHHhcCCc----hhHHHHHHHhhhccCCcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 014502 41 NPLISRLLQVPV----SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA 116 (423)
Q Consensus 41 ~~ll~~l~~~~~----~~~~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~ 116 (423)
..++..+-+.+. .++......+...++.+....+..++.-.+.+++++|+.+. +.-......+... +=.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i----kk~~~~~~~~~~~---fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI----KKNGALLVINSFF---FEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH----Hhcchhhhcchhh---HHH
Confidence 456666655552 23466666667666555555566666668999999999774 3211111112222 233
Q ss_pred HHh--cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-------------------
Q 014502 117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY------------------- 175 (423)
Q Consensus 117 ~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------- 175 (423)
+|| +.+..++|...++..... |..+...-...+.+.|++++|+++|+.+.+. +.
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhh
Confidence 444 788999999998833221 3447777778888999999999999999652 11
Q ss_pred ---------CCCHHhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCC------CCCHHHH--------HHHHHHHHhcCC
Q 014502 176 ---------KPNSKTYDAFIS---GFSSLGNVDAMNKWYAANIAAGF------SVNVQTY--------ESLIHGSLKARD 229 (423)
Q Consensus 176 ---------~p~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~--------~~li~~~~~~g~ 229 (423)
.| ..+|..+.+ .+...|++.+|+++++...+.+. .-+..-+ --+.-.+...|+
T Consensus 161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 224444442 34567888899998887732210 0011111 112234567788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHH--HHHHH------------HHHH----------------
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILEKVLE---GLCARRKLDR--VKSFL------------KFLL---------------- 276 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~g~~~~--a~~~~------------~~~~---------------- 276 (423)
.++|.++|....... .+|........+ ++..-.++-. ++..+ ..+.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887765 344322211111 1111111000 00000 0000
Q ss_pred -----------hCCCccC--HHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 277 -----------GGGWKIN--ENMAQKLVKCYCE--LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 277 -----------~~g~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
....+++ ...+..++..+.+ ......|..++...-+.. |.....+--.++......|+++.|.
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHH
Confidence 0011111 1223333332222 123555666666655533 4443222567788889999999999
Q ss_pred HHHH--------HHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC------CCcccHHHHHHHHHHHHhcCC
Q 014502 342 YSVG--------RMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG------SYKLRRATYDFLVAGYRRAGL 406 (423)
Q Consensus 342 ~~~~--------~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~ 406 (423)
+++. .+.+.+.. |.++..+...+.+.++.+ +..++.+.+.- +-..-..++.-+...-.+.|+
T Consensus 397 ~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9998 66665543 788888888888877764 45555544321 111123445556666678899
Q ss_pred hhHHHHHHHHHHh
Q 014502 407 SGKLDSVINEMKF 419 (423)
Q Consensus 407 ~~~a~~~~~~m~~ 419 (423)
-++|..+++++.+
T Consensus 474 ~~ea~s~leel~k 486 (652)
T KOG2376|consen 474 EEEASSLLEELVK 486 (652)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999876
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=6e-06 Score=82.92 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHH
Q 014502 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLGNVDAMNKW 201 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~ 201 (423)
+.|.++-..++.. +-+...|-..|.-....++.++|.++.++....-++... ...|.++++.-...|.-+...++
T Consensus 1442 esaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3444444444432 224568999999999999999999999998863222222 34688888888888888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 014502 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281 (423)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 281 (423)
|++..+.- -....|..|...|.+.+++++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.+.++. ++
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence 99998752 235568899999999999999999999997752 356678999999999999999999999999875 22
Q ss_pred c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh
Q 014502 282 I--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359 (423)
Q Consensus 282 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 359 (423)
- ........+..-.+.|+.+.+..+|+...... |-. +.+|+..++.-.++|+.+.+..+|++....++.+.....
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 2 23355566677788999999999999988744 322 223999999999999999999999999998887654433
Q ss_pred H-HHHHHHHhhccccchHHHH
Q 014502 360 V-EMVICSYFRCAAYDRLDLF 379 (423)
Q Consensus 360 ~-~~l~~~~~~~~~~~~~~~~ 379 (423)
+ ...+..-.+.|+-+.++.+
T Consensus 1673 ffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHhcCchhhHHHH
Confidence 3 4444444455655444433
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.80 E-value=0.00011 Score=68.49 Aligned_cols=302 Identities=9% Similarity=0.018 Sum_probs=182.8
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------C------CHHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS----------------G------DVVTALSL 165 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~ 165 (423)
...|++|.+.|.+.|.+++|.++|++.... ..+..-|+.+.++|+.- | +++-...-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 467999999999999999999999998765 23444555555555421 1 12223333
Q ss_pred HHHHHhcCC----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCC
Q 014502 166 FEIMVSSEE----------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV------NVQTYESLIHGSLKARD 229 (423)
Q Consensus 166 ~~~m~~~~~----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~ 229 (423)
|+.+..... -+-++.+|..-+.. ..|+..+-...|.+..+. +.| -...|..+...|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 444333111 11223334333322 245566677777776654 222 23457788888999999
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------Ccc------CHHhHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----------WKI------NENMAQK 289 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-----------~~~------~~~~~~~ 289 (423)
.+.|..+|++..+...+-- ..+|......=.+..+++.|.++.+.....- .++ +...|+.
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999998876432211 3456666666677888999999888765321 111 2235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh
Q 014502 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR 369 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 369 (423)
.++.--..|-++....+++.+.+..+.......-|..+ +-.+..++++.+++++-+.--.-|.-.+.|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 66666678888999999999988665433332113333 345667888888887765533233445666666555544
Q ss_pred c-c--ccchHHHHHHHHhCCCcccHH--HHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 370 C-A--AYDRLDLFLDHIKGSYKLRRA--TYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 370 ~-~--~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
. | ..|.+..+++....|.+|... .|-.....=-+.|....|+.++++.
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 2 235555555555557777532 2333333334568888888888874
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=1.1e-05 Score=81.06 Aligned_cols=239 Identities=9% Similarity=0.099 Sum_probs=192.7
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-----DSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
|++.....+.....|-.-|....+.+++++|.+++++.... +.+ -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 35555566667778999999999999999999999998764 222 234788888888888988999999999998
Q ss_pred cCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 014502 172 SEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-- 248 (423)
Q Consensus 172 ~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 248 (423)
. -| ...|..|...|.+.+..++|.++++.|.+.= .-....|...+..+.+..+-+.|..++.+..+. -|.
T Consensus 1526 -y---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1526 -Y---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred -h---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 3 33 3468889999999999999999999999862 247788999999999999999999999988764 343
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 014502 249 -IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327 (423)
Q Consensus 249 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 327 (423)
.....-.+..-.+.|+.+.+..+|+..+..- +--...|+..+++-.+.|+.+.++.+|+.+...++.|...-.+|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 2334445555678899999999999998863 34566899999999999999999999999999999888776668888
Q ss_pred HHHHHhcCChhHHHHHH
Q 014502 328 IRLYALSDRLDDVEYSV 344 (423)
Q Consensus 328 i~~~~~~g~~~~a~~~~ 344 (423)
+..--..|+-..++.+=
T Consensus 1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHhcCchhhHHHHH
Confidence 87777777766555443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=9.8e-07 Score=77.48 Aligned_cols=253 Identities=11% Similarity=0.091 Sum_probs=161.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 229 (423)
++-+.-.|++..++.-.+ ... ..-..+......+.+++...|+.+.++ .++.... .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 345566799999887666 332 111122334455678999999987543 4444443 6676666555544443355
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILE-KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (423)
-+.++.-+++....+..++..++. .....+...|++++|+++++.. .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556655555544444333333333 3334566789999999887642 356677778999999999999999999
Q ss_pred HHHhCCCCCchH-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502 309 TLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS 386 (423)
Q Consensus 309 ~~~~~~~~p~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 386 (423)
.|.+.+ .|.. +.+..+.+..+.-.+.+.+|..+|+++.+. . ++++...+.+..++...|+++ |.+.+.+.+...
T Consensus 156 ~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 998753 3332 323444444444455799999999999764 2 346889999999999999995 666776665432
Q ss_pred CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 014502 387 YKLRRATYDFLVAGYRRAGLS-GKLDSVINEMKF 419 (423)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 419 (423)
+-++.+..-++-+....|+. +.+.+++.+++.
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 44677777788888888888 667788887764
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=0.00011 Score=63.36 Aligned_cols=304 Identities=10% Similarity=0.020 Sum_probs=187.2
Q ss_pred hhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 014502 63 DIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK 140 (423)
Q Consensus 63 ~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 140 (423)
...+..|..+.=..=+.. +..|.+.+|+.. |....+.++.+-.++-.-...|.-.|+-..|+.=|.+..+. +
T Consensus 29 a~~~~~~advekhlElGk~lla~~Q~sDALt~----yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--K 102 (504)
T KOG0624|consen 29 AESTASPADVEKHLELGKELLARGQLSDALTH----YHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--K 102 (504)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--C
Confidence 444555443332222332 688888899888 45555555444445555556677777777788878777775 5
Q ss_pred CCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH----------------hHHHHHHHHHhcCCHHHHHHHHH
Q 014502 141 PDSAV-FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK----------------TYDAFISGFSSLGNVDAMNKWYA 203 (423)
Q Consensus 141 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----------------~~~~li~~~~~~~~~~~a~~~~~ 203 (423)
||-.. --.-...+.+.|.+++|..=|+...+. .|+.. .....+..+...|+...|+....
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 66432 222334567888999998888888763 23211 12233455666788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283 (423)
Q Consensus 204 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 283 (423)
.+.+.. ..|...|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+..+..+++.++ +.||
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 888764 3477777777888888898888887665554433 23344555566667788888888888888887 4465
Q ss_pred HHhHHHH-------H------HHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 284 ENMAQKL-------V------KCYCELGRVDELEEQLETLTKCNQS-PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 284 ~~~~~~l-------i------~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
...+-.. . ....+.+++.++.+..+...+.... +......+..+..+|...|++.+|++.-.+..+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 4322211 1 1223455666666666666664432 212212245566777788888888888888876
Q ss_pred CCCCCCChHhHHHHHHHHhhccccc-hHHHHHH
Q 014502 350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLD 381 (423)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 381 (423)
+.|++..++.--..+|.-..+++ ++.-|..
T Consensus 336 --~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 336 --IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred --cCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55666666655555555444442 3444433
No 90
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00027 Score=64.77 Aligned_cols=150 Identities=7% Similarity=-0.028 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhC-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502 265 LDRVKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343 (423)
Q Consensus 265 ~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~ 343 (423)
.+.....+++++.. ..+|+ -+|-.+++.-.+..-++.|..+|.+..+.+..+.. ..++++++..||. ++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh-VfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH-VFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch-hhHHHHHHHHHhc-CChhHHHHH
Confidence 55566666666554 23333 35667778878888899999999999998877722 2337888887664 677889999
Q ss_pred HHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHH-HHHhCCCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 344 VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL-DHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 344 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
|+--... -+++|......+.-+...++..-++.++ +.+..+..|| ...|..+++-=..-|+...+.++-+++..
T Consensus 424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9876542 2345777788888888888886555444 4445555555 57899999999999999999988877643
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.4e-06 Score=78.65 Aligned_cols=233 Identities=13% Similarity=0.095 Sum_probs=178.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
..+...+.+.|-...|..+|+++ ..|.-+|.+|...|+.++|..+..+-.+ -+||...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 45667778888888888888765 4678889999999999999999888776 26899999999988888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (423)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..--+..+.++++.+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 88888999888765432 12222222344789999999998766543 33456777777777889999999999
Q ss_pred HHHHHhCCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 272 LKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 272 ~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
|...... .|| ...||.+-.+|.+.|+..+|...+.+..+.+..+ +.. |..-+....+.|.+++|.+.+.++.+.
T Consensus 542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~i-WENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQI-WENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--Cee-eechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9998874 454 6689999999999999999999999999876333 222 777777889999999999999998865
Q ss_pred CCCCCChHhHHHHHHHHhh
Q 014502 351 GLSFKSAEDVEMVICSYFR 369 (423)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~ 369 (423)
.....++.....++....+
T Consensus 617 ~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhcccchhhHHHHHHHHh
Confidence 4444456665555554444
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=9.5e-06 Score=77.36 Aligned_cols=294 Identities=15% Similarity=0.074 Sum_probs=187.5
Q ss_pred ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-C-------
Q 014502 70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-G------- 138 (423)
Q Consensus 70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g------- 138 (423)
|..|-..++.. ..-|+.+.|.+.++ - +.+..+|..|.+.|.+.++++-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~----~-----IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQ----F-----IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHH----H-----HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 56677788887 48899999987742 2 345678999999999999999998888877642 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 139 -IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217 (423)
Q Consensus 139 -~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (423)
-.|+ ..=..+.-.....|..++|+.+|++-++ |..|=+.|-..|.|++|.++-+.=-+.. =..||
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Ty 861 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTY 861 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhH
Confidence 1222 2222233334578999999999999886 5666677888999999999876533222 23455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 218 ESLIHGSLKARDFDSVDRFYEEMM----------SLG---------IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 218 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
..-...+-..+|.+.|++.|++-. ... -..|...|.....-+-..|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 555666667788888888776531 111 122334444444445556777777777665543
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (423)
Q Consensus 279 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 358 (423)
|-++++..|-.|+.++|-++-++-.. ... .-.|...|-..|++.+|..+|.+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esgd------~AA--cYhlaR~YEn~g~v~~Av~FfTrAq---------- 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESGD------KAA--CYHLARMYENDGDVVKAVKFFTRAQ---------- 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhccc------HHH--HHHHHHHhhhhHHHHHHHHHHHHHH----------
Confidence 55577777788999998887765422 222 3457889999999999999987743
Q ss_pred hHHHHHHHHhhccccchHHHHHHHHhCCCccc--------HHHHHHHHHHHHhcCChhHHHHH
Q 014502 359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR--------RATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
+|...|..|..++..+.+.-+..+....-... ..-+...+..|.++|.+.+|+++
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHH
Confidence 44444555544443333222222211000000 01233456678888888888775
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00029 Score=69.18 Aligned_cols=199 Identities=10% Similarity=0.093 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
.|..+..+-.+.|.+.+|++-|-+. -|+..|.-+++...+.|.|++-.+++....+..-.|.+. +.+|-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence 4666666666666666665554332 155566666777777777777666666555544444333 34566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a 340 (423)
+.++..+..+++ .-|+..-...+.+-|...|.++.|.-++..+.. |..|...+...|+++.|
T Consensus 1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHH
Confidence 666666554443 235555566666666666666666666655543 77777788888888888
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
.+.-++. ++..+|..+-.+|...+.+.-++ +.--.+-....-..-++.-|-..|-+++.+.+++.
T Consensus 1240 VD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1240 VDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 7765543 23677777777777665443222 22222223444566677777777777777666653
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00025 Score=61.60 Aligned_cols=154 Identities=8% Similarity=-0.024 Sum_probs=95.3
Q ss_pred hHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 73 SWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (423)
Q Consensus 73 ~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (423)
..+..|.- +..|++++|+.++ ........++...+-.|...+.-.|.+.+|..+-....+ ++---..+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y----~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlf 128 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVY----TFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLF 128 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHH----HHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHH
Confidence 33445554 5889999999994 444455557777777777777778888888887655432 333333444
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCC
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-HGSLKARD 229 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~ 229 (423)
...-+.|+-++-..+-+.+.. +..---+|.......-.+.+|+.+|.+.... .|+-...|.-+ -+|.+..-
T Consensus 129 hlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 129 HLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcch
Confidence 555566776666666555543 1112223444445556678888888888765 34444444433 35667777
Q ss_pred HHHHHHHHHHHHHC
Q 014502 230 FDSVDRFYEEMMSL 243 (423)
Q Consensus 230 ~~~a~~~~~~m~~~ 243 (423)
++-+.++++--..+
T Consensus 201 ydvsqevl~vYL~q 214 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ 214 (557)
T ss_pred hhhHHHHHHHHHHh
Confidence 77777777666554
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=0.00045 Score=72.04 Aligned_cols=307 Identities=9% Similarity=-0.036 Sum_probs=189.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGI------KPDS--AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS---- 179 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~------~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---- 179 (423)
......+...|++++|...++.....-- .+.. .....+...+...|++++|...+++..+.. -..+.
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHH
Confidence 3344455677899999999987754310 1111 122233345567899999999999876521 11121
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-
Q 014502 180 KTYDAFISGFSSLGNVDAMNKWYAANIAA----GF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----LGII--P- 247 (423)
Q Consensus 180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p- 247 (423)
...+.+...+...|++++|...+++.... |. .....++..+...+...|++++|...+++... .+.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 24455666778899999999999887643 11 11123455666778889999999999887654 2221 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--Ccc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-CchH
Q 014502 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKI--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQ--S-PEVL 320 (423)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~-p~~~ 320 (423)
....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.++....... . +...
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 22334455556777899999999998875531 112 223444466677889999999999888754211 1 1010
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC--hHhHHHHHHHHhhccccc-hHHHHHHHHhC----CCccc-H
Q 014502 321 -LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS--AEDVEMVICSYFRCAAYD-RLDLFLDHIKG----SYKLR-R 391 (423)
Q Consensus 321 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~----~~~p~-~ 391 (423)
...-...+..+...|+.+.|.+.+..........+. ...+..+..++...|+.+ +...+.+.... +..++ .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 100111234456688999999988775542211110 111345667777888874 55555555432 32322 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+...+..++.+.|+.++|...+.+..+
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788899999999999999988754
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=75.99 Aligned_cols=238 Identities=10% Similarity=0.022 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (423)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (423)
+|--..-..+...+...|-..+|..+|++... |..+|.+|...|+.++|..+..+..+. +||...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34344455677888889999999999998864 777889999999999999999888873 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
+.+.....--+++|.++.+..... .-..+.....+.++++++.+.++.-.+.. +.-..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888899999998765432 11122222344789999999999877753 3456688888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHH
Q 014502 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDL 378 (423)
Q Consensus 300 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 378 (423)
++.|.+.|..... ..|+.... ||.+-.+|.+.|+-.+|...+++..+.+. .+...|...+....+-|.++ +.+.
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~ea-WnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEA-WNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhh-hhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHH
Confidence 9999999998877 66888776 99999999999999999999999998774 35888888888888888884 6777
Q ss_pred HHHHHhCC-CcccHHHHHHHHHHHH
Q 014502 379 FLDHIKGS-YKLRRATYDFLVAGYR 402 (423)
Q Consensus 379 ~~~~~~~~-~~p~~~~~~~l~~~~~ 402 (423)
+.++..-. ...|......++....
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHHH
Confidence 77665321 1124444444444443
No 97
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=0.0002 Score=63.91 Aligned_cols=205 Identities=9% Similarity=0.018 Sum_probs=124.0
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV- 159 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 159 (423)
..+..++|+.. .++....++-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 49 ~~e~serAL~l----t~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 49 SDERSPRALDL----TADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred cCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 45567777777 55666666666667776666666666 567888888887776433 555677665555555552
Q ss_pred -HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 014502 160 -VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---RDF----D 231 (423)
Q Consensus 160 -~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~ 231 (423)
++++.+++++.+. -+-|..+|+...-++...|+++++++.++++.+.++. |..+|+.....+.+. |.. +
T Consensus 124 ~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 5667777777652 1345667777777777777888888888888777644 666666655544443 222 3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCAR----RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 296 (423)
+.++...++.... +-|...|+-+...+... +...+|.+.+.+....+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4555555554432 23345555555555442 33445666666655533 2344556666666654
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=1.8e-05 Score=68.02 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 290 LVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+...|.+.|++++|...++...+... .|.. ...+..+..++...|+.++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPAT-EEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44456666666666666666655322 1211 11255666666666666666666666554
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=7.6e-05 Score=68.75 Aligned_cols=253 Identities=12% Similarity=0.066 Sum_probs=181.5
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD 231 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 231 (423)
-+.+.|++.+|.-.|+...+. -+-+...|--|.......++-..|+..+.+..+.... |....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 345788899999999888763 2445678888888888889988999999998887644 7788888888899999999
Q ss_pred HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502 232 SVDRFYEEMMSLGII--------PSIPILEKVLEGLCARRKLDRVKSFLKFLL-GGGWKINENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 232 ~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~ 302 (423)
.|++.++.......+ ++...-.. ..+.....+....++|-++. ..+..+|..++..|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999988887543210 00000000 11222223344455555543 44545778888888888889999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH
Q 014502 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD 381 (423)
Q Consensus 303 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 381 (423)
|.+.|+.+.. .+|+.... ||-|-..++...+.++|+..|.+.++ +.|.=..+...|.-.|...|.+ |+++.|.+
T Consensus 449 aiDcf~~AL~--v~Pnd~~l-WNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLL-WNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHh--cCCchHHH-HHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999988 56776654 99999999999999999999999987 6666567778888889999988 57777766
Q ss_pred HHh---CCC------cccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502 382 HIK---GSY------KLRRATYDFLVAGYRRAGLSGKLDSVI 414 (423)
Q Consensus 382 ~~~---~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (423)
.+. ++. .++...|..|=.++.-.++.|.+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 542 211 123456777777777778777555543
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=3e-05 Score=64.48 Aligned_cols=164 Identities=10% Similarity=0.048 Sum_probs=117.9
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
|..+ ..+-..+.-.|+-+....+....... .+-|....+..+....+.|++.+|+..+++... .-++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 5555 66666666777777777766664433 233556667788888888888888888888875 4567778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
-+|.+.|++++|..-|.+..+.... +...+|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 8888888888888888887776433 55667777777778888888888888777665 335666666777777888888
Q ss_pred HHHHHHHHHH
Q 014502 267 RVKSFLKFLL 276 (423)
Q Consensus 267 ~a~~~~~~~~ 276 (423)
+|.++...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 8887765544
No 101
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=0.00028 Score=63.02 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=138.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
+..+-..+...++.++|+.+.+++.+. .| +..+|+.--.++...| ++++++..++++.+. -+.+..+|+.--..
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~ 115 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHH
Confidence 334444555677888999999998876 33 3446776666666777 578999999988862 23445566655545
Q ss_pred HHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 014502 189 FSSLGN--VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---R 263 (423)
Q Consensus 189 ~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g 263 (423)
+.+.|+ .+++..+++++.+.... |..+|+...-.+.+.|+++++++.++++.+.+ .-+...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 555565 36778888888877644 78888888888888899999999999998876 34455566554444433 2
Q ss_pred CH----HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh
Q 014502 264 KL----DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL----GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL 333 (423)
Q Consensus 264 ~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 333 (423)
.. +...+...+++... +-|...|+-+...+... ++..+|.+.+.+....+ |.... +...|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~-al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVF-ALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHH-HHHHHHHHHHh
Confidence 22 35566665666542 34566777666666652 33455777777665532 33222 25666777664
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=2e-05 Score=67.76 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCChHhHHHHHHHHhhccccch-HHHH
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGKQGL-SFKSAEDVEMVICSYFRCAAYDR-LDLF 379 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 379 (423)
.+...|...|++++|...+++..+..- .|..+..+..+..++.+.|+.+. ...+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345567778888888888888776422 23335677788888888888753 4433
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.56 E-value=0.00077 Score=63.19 Aligned_cols=293 Identities=15% Similarity=0.062 Sum_probs=180.2
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----------CC
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSE----------EY 175 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~ 175 (423)
..|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++++...... +.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4588888999999999999999999887644322 2355555555567778888988888765410 11
Q ss_pred CC------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502 176 KP------NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249 (423)
Q Consensus 176 ~p------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 249 (423)
++ +...|...+..--..|-++....+|+.+.+..+. ++..--.....+-.+..++++.++|++=...--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 1223444555555667888888888888877654 3333222333345667788899888765554335554
Q ss_pred H-HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCccCHHhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 014502 250 P-ILEKVLEGLCA---RRKLDRVKSFLKFLLGGGWKINENMAQKLV--KCYCELGRVDELEEQLETLTKCNQSPEVLLHF 323 (423)
Q Consensus 250 ~-~~~~li~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 323 (423)
. .|+..+.-+.+ ....+.|..+|++.++ |++|...-+--|+ ..=-+.|....|..+++.... ++.+......
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 3 46666666554 3468899999999998 6666543222121 222235778888899988654 3556555556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHH---HHHHHHhhccccchHHHHHHHHhCCCcc--cHHHHHHHH
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE---MVICSYFRCAAYDRLDLFLDHIKGSYKL--RRATYDFLV 398 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~ 398 (423)
||..|.--...=-+.....+|++.++. -|+ ...-. .....-++.|..+.+..+.....+-..| +..-|..-=
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~--Lp~-~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIES--LPD-SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHh--CCh-HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 888877666665566667777777764 222 22222 1223334456665555444444443344 344566666
Q ss_pred HHHHhcCCh
Q 014502 399 AGYRRAGLS 407 (423)
Q Consensus 399 ~~~~~~g~~ 407 (423)
..=.+.|+-
T Consensus 702 ~FEvrHGne 710 (835)
T KOG2047|consen 702 EFEVRHGNE 710 (835)
T ss_pred HHHHhcCCH
Confidence 666677773
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.55 E-value=0.00012 Score=69.69 Aligned_cols=283 Identities=11% Similarity=0.002 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014502 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166 (423)
Q Consensus 87 ~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 166 (423)
.++++. +++-.+.+..|+.+.-.+.--|+..++++.|.+...+..+.+-.-+...|..+...+...+++.+|+.+.
T Consensus 461 ~kslqa----le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 461 KKSLQA----LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHH----HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 345555 5666666676777767777788889999999999999998866678999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC--CC-----CHHHHH
Q 014502 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA---------------------GF--SV-----NVQTYE 218 (423)
Q Consensus 167 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~--~~-----~~~~~~ 218 (423)
+......| -|......-+..-...++.++++.....+... |+ .+ ...++.
T Consensus 537 d~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 537 DAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred HHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence 98776332 22211112222222345555554443333211 00 00 112222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSLGII--PS------IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 290 (423)
.+..-....+ +.+..- ..|...-+. |+ ...|......+.+.+..++|...+.+.... .+.....|...
T Consensus 615 ~ls~l~a~~~--~~~~se-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~ 690 (799)
T KOG4162|consen 615 YLSSLVASQL--KSAGSE-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLR 690 (799)
T ss_pred HHHHHHHhhh--hhcccc-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHh
Confidence 2211111000 000000 002221122 22 123556667788889999999888888775 34456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY--SVGRMGKQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~l~~~~~ 368 (423)
...+...|..++|.+.|..... +.|+.... ..++...+.+.|+..-|.. ++.++.+ +.|.++..|-.+...+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s-~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA--LDPDHVPS-MTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFK 765 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh--cCCCCcHH-HHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence 7888889999999999998887 56776654 7899999999999888888 9999988 56788999999999999
Q ss_pred hccccc-hHHHHHHHHh
Q 014502 369 RCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 369 ~~~~~~-~~~~~~~~~~ 384 (423)
+.|+.+ +++-|....+
T Consensus 766 ~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQ 782 (799)
T ss_pred HccchHHHHHHHHHHHh
Confidence 999996 5666655443
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.1e-05 Score=71.22 Aligned_cols=256 Identities=10% Similarity=-0.013 Sum_probs=174.8
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDA 184 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ 184 (423)
||++- ...-+.+.|++.+|.-.|+........ +...|--|......+++-..|+..+++..+ +.| |....-.
T Consensus 286 pdPf~---eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLma 358 (579)
T KOG1125|consen 286 PDPFK---EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMA 358 (579)
T ss_pred CChHH---HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHH
Confidence 55543 233456788899998888888776422 566888888888888888888888888876 345 4556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSV--------NVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKV 255 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l 255 (423)
|.-.|...|.-.+|++.++.-....++- +...-+. ..+.......+..++|-++. ..+..+|......|
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 7778888888888888888765443110 0000000 12233344555566666554 44545677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 335 (423)
--.|.-.|+++.|.+.|+.++... +-|..+||.|...++...+.++|+..|++..+ +.|.-+-.=|| |.-.|...|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG 512 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLG 512 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhh
Confidence 777888899999999999888853 34667899999999999999999999998888 55664433244 555788889
Q ss_pred ChhHHHHHHHHHH---hC-----CCCCCChHhHHHHHHHHhhccccc
Q 014502 336 RLDDVEYSVGRMG---KQ-----GLSFKSAEDVEMVICSYFRCAAYD 374 (423)
Q Consensus 336 ~~~~a~~~~~~m~---~~-----~~~~~~~~~~~~l~~~~~~~~~~~ 374 (423)
.+++|.+.|-..+ +. +....+...|.+|-.++.-.++.|
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9988887775543 21 122224678888877777766666
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00033 Score=73.04 Aligned_cols=302 Identities=8% Similarity=-0.036 Sum_probs=180.9
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CCCH--HhHHHHHHHHH
Q 014502 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-----KPNS--KTYDAFISGFS 190 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~~--~~~~~li~~~~ 190 (423)
....|+++.+...++.+.......+..........+...|++++|...+.+......- .+.. .....+-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777666532211112333344555667789999999999887542110 1111 11222334566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCC--HHHHHHHHHHHHh
Q 014502 191 SLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDFDSVDRFYEEMMSL--GI-IPS--IPILEKVLEGLCA 261 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~--~~~~~~li~~~~~ 261 (423)
..|++++|...+++....-...+. ...+.+...+...|++++|...+++.... .. .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987763212121 34455666778899999999999887642 11 111 2345556667788
Q ss_pred cCCHHHHHHHHHHHHhC----CCc--c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHH
Q 014502 262 RRKLDRVKSFLKFLLGG----GWK--I-NENMAQKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGIIRLYA 332 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~~~ 332 (423)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887552 221 1 22334455666777899999999988875421 112222333566777888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCChHhH-----HHHHHHHhhccccchHHHHHHHHhCCCccc----HHHHHHHHHHHHh
Q 014502 333 LSDRLDDVEYSVGRMGKQGLSFKSAEDV-----EMVICSYFRCAAYDRLDLFLDHIKGSYKLR----RATYDFLVAGYRR 403 (423)
Q Consensus 333 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 403 (423)
..|+.++|.+.+.+.............+ ...+..+...|+.+.+..+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 9999999999988875421110001111 112234445666655443332222111111 1124567788899
Q ss_pred cCChhHHHHHHHHHHh
Q 014502 404 AGLSGKLDSVINEMKF 419 (423)
Q Consensus 404 ~g~~~~a~~~~~~m~~ 419 (423)
.|++++|...+++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00016 Score=61.33 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=123.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 199 (423)
..+++..+..+.++....| +..+.+.......+.|+++.|++-|+...+..|..|- ..||.-+ ++.+.++.+.|+
T Consensus 124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHH
Confidence 4566666666666665432 4445555555566889999999999999886676665 4677655 566789999999
Q ss_pred HHHHHHHHCCCCC-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 014502 200 KWYAANIAAGFSV-------------NV---------------QTYESLIHGSLKARDFDSVDRFYEEMMS-LGIIPSIP 250 (423)
Q Consensus 200 ~~~~~m~~~~~~~-------------~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~ 250 (423)
+...++.+.|+.- |+ ..+|.=...+.+.|+++.|.+-+-+|.- ..-..|+.
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 9999998877521 11 1223333345678999999998888843 22345667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
|...+.-. -..+++....+-+.-+.... +....||..++-.||+..-++.|-+++.+-
T Consensus 279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 279 TLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 76655322 12345555555566666653 345678888999999999999998888653
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00042 Score=57.88 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----R 262 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 262 (423)
..|+..+++++|++..+... +......=...+.+..+++.|.+.+++|.+ .-+..|.+-+..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccc
Confidence 44555666666666555411 222222223334555556666666666654 2234444444444432 2
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
+++..|.-+|++|-++ .+|+.-+.+-...++...|++++|..++++...+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4455566666665543 3455555555555555566666666666655543
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=0.001 Score=61.11 Aligned_cols=353 Identities=12% Similarity=0.024 Sum_probs=170.6
Q ss_pred hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHH
Q 014502 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (423)
Q Consensus 54 ~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (423)
.+...|.+.....+. +.+.|+.=..+ .+.|++.+|++- -.+-.+..+.-...|+....++.-.|++++|+.-|.
T Consensus 20 ~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~d----a~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 20 TAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKD----ATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred HHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHH----HHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 345566665544433 56666666666 677888888776 444445544456778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHHHhcC--CCCCCHHhHHHHHHHHHhcC-------CHHHHHH
Q 014502 133 SMEAQGIKPDSAVFNSLICACLCSGDVVTA---LSLFEIMVSSE--EYKPNSKTYDAFISGFSSLG-------NVDAMNK 200 (423)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~-------~~~~a~~ 200 (423)
+-.+.. +-+...++-+..++.......+. -.++....... ........|..++...-+.- +.+...+
T Consensus 95 ~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 95 EGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 777652 22445666666655211000000 00000000000 00000001111111111000 0000000
Q ss_pred HHHHHH--------HCC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 201 WYAANI--------AAG-------FSV----------------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 201 ~~~~m~--------~~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 243 (423)
....+. ..| ..| -..-...+.++..+..+++.|++-+....+.
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 000000 000 000 0012334455555555666666655555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 014502 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-------KLVKCYCELGRVDELEEQLETLTKCNQS 316 (423)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~~g~~~~a~~~~~~~~~~~~~ 316 (423)
. -+..-++..-.+|...|.+.+....-....+.|.. ...-|+ .+..+|.+.++++.+...|++.......
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 2 22333344444455555555544444444443321 111111 1222444445555555555554432222
Q ss_pred CchHH------------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502 317 PEVLL------------------------HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 317 p~~~~------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (423)
|+... . ...--..+.+.|++..|+.-+.+++... |+|+..|..-.-+|.+.|.
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhh
Confidence 22211 1 1112445667788888888888877744 7778888888888888877
Q ss_pred c-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 373 Y-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 373 ~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+ .++.-....++. -++....|..=..++.-..+|++|.+.|++-.+
T Consensus 408 ~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 408 YPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 355544444433 133355566666667777777777777776543
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.0001 Score=72.59 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=124.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217 (423)
Q Consensus 139 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (423)
...++..+-.|.......|.+++|..+++...+ ..|+. .....+...+.+.+++++|....++....... +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 345688888999999999999999999999987 35654 56677788999999999999999999988644 66777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (423)
Q Consensus 218 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 297 (423)
+.+..++.+.|++++|..+|++....+ .-+..++..+..++-..|+.++|...|+...+. ..+....|+..+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~----- 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH-----
Confidence 778888999999999999999998743 334778888999999999999999999998876 2345555555432
Q ss_pred CCHHHHHHHHHHHH
Q 014502 298 GRVDELEEQLETLT 311 (423)
Q Consensus 298 g~~~~a~~~~~~~~ 311 (423)
++..-...++.+.
T Consensus 231 -~~~~~~~~~~~~~ 243 (694)
T PRK15179 231 -DLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHcC
Confidence 2333344555543
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=0.00014 Score=72.43 Aligned_cols=154 Identities=10% Similarity=0.126 Sum_probs=91.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE 257 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 257 (423)
+...+-.+..+|-+.|+.++|..+|+++.+.... |..+.|.+...|... +.++|.+++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 3346666777777778888888888887777633 677777777777777 777777777666542
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL 337 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 337 (423)
+...+++..+.++|.++..... .+...+..+.+.....-....+ ..++--+-..|-..+++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~-----------------~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRL-----------------VGLLEDLYEPYKALEDW 239 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchh-----------------HHHHHHHHHHHhhhhhh
Confidence 4455566666777776666421 1222222222211111001111 11134445567777778
Q ss_pred hHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 338 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 368 (423)
+++..+++.+.+ ..|.+.....-++.+|.
T Consensus 240 ~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 888888888776 34445555566666665
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=9.1e-05 Score=61.42 Aligned_cols=118 Identities=7% Similarity=-0.044 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH-HhcCC--HHHH
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY-CELGR--VDEL 303 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~--~~~a 303 (423)
.++.+++...++...+.. +.|...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344444444444444332 3344455555555555555555555555555542 22344444444432 34444 3555
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 304 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+++++..+.+ |+.... +..+...+...|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~d--P~~~~a-l~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD--ANEVTA-LMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC--CCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555532 333222 44555555555555555555555554
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=0.00015 Score=60.46 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (423)
.+-..+...|+-+....+........ ..|....+..+....+.|++..|+..+++..... ++|..+|+.+--+|-+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 34445555555555555555443322 2244444445566666666666666666655443 455666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343 (423)
Q Consensus 264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~ 343 (423)
++++|..-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++......+...... -..+.......|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v---~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV---RQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH---HHHHHHHHhhcCChHHHHhh
Confidence 6666666666666542 1234455555556666666666666666655543222111 34455555666666666665
Q ss_pred HHH
Q 014502 344 VGR 346 (423)
Q Consensus 344 ~~~ 346 (423)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=4.4e-05 Score=59.82 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=65.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
.+|++..+. ++..+......+...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++....
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 2333444556666667777777777666651 1335556666666666777777777777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 243 (423)
.. .+...+..+..++.+.|++++|+..|+...+.
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42 25666666666666677777777777666553
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=0.00027 Score=69.67 Aligned_cols=145 Identities=7% Similarity=-0.002 Sum_probs=107.2
Q ss_pred CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHh
Q 014502 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKT 181 (423)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~ 181 (423)
...+...+-.|..+..+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++.... .|+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHH
Confidence 3456888888888888888888888888888876 454 446777788888888888888888888762 354 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (423)
...+-.++.+.|++++|+.+|++....+. -+..++..+...+-+.|+.++|...|+...+.. .|....|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 56666778888888888888888887432 247778888888888888888888888876542 3444444433
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=6.1e-05 Score=71.25 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=89.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
+......|.+|+.+++.+...+. -.--|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666666665432 2233555666777777777777776432 124455667777777777
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
|.++-.+... .......|-+-..-+-+.|++.+|++++-.+.. |+. .|..|-+.|..++.+++.++-
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-------aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-------AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-------HHHHHHhhCcchHHHHHHHHh
Confidence 7776555432 233344555555555666677666666654432 432 245566666666666665543
Q ss_pred HhCCCCCCChHhHHHHHHHHhhccccch
Q 014502 348 GKQGLSFKSAEDVEMVICSYFRCAAYDR 375 (423)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 375 (423)
.-..+ .++...+..-+...|+..+
T Consensus 877 h~d~l----~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 877 HGDHL----HDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred Chhhh----hHHHHHHHHHHHhccChhH
Confidence 22111 3444555555666666543
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=5.3e-07 Score=51.44 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 248 (423)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.002 Score=59.86 Aligned_cols=321 Identities=14% Similarity=0.096 Sum_probs=175.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-------------------
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP------------------- 141 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p------------------- 141 (423)
++.+..++|+..+ + .....|..+...-...+-+.+++++|.++|+.+.+.+.+-
T Consensus 90 Yrlnk~Dealk~~----~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTL----K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHcccHHHHHHHH----h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 6999999999883 3 2233456677777888899999999999999996543210
Q ss_pred --------CHHHHHHH---HHHHHccCCHHHHHHHHHHHHh----c---C-----CCCCCHHh-HHHHHHHHHhcCCHHH
Q 014502 142 --------DSAVFNSL---ICACLCSGDVVTALSLFEIMVS----S---E-----EYKPNSKT-YDAFISGFSSLGNVDA 197 (423)
Q Consensus 142 --------~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~----~---~-----~~~p~~~~-~~~li~~~~~~~~~~~ 197 (423)
...+|..+ ...++..|++.+|+++++...+ . . ++.....+ --.|.-.+-..|+-++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01133333 3345678999999999999922 0 0 01111111 1234455667899999
Q ss_pred HHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH----------------HHH-----------------------
Q 014502 198 MNKWYAANIAAGFSVNVQ----TYESLIHGSLKARDFD----------------SVD----------------------- 234 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~----------------~a~----------------------- 234 (423)
|.+++....+.... |.. .-|.|+..-....-++ ...
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998887532 321 1122211100000000 000
Q ss_pred ---HHHHHHHH-CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502 235 ---RFYEEMMS-LGIIPSIPILEKVLEGLCA--RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308 (423)
Q Consensus 235 ---~~~~~m~~-~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (423)
++.+.... -+..| ...+.+++..+.+ ......+.+++...-+..-.-...+.-..+......|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000001 01122 2344455544432 22456666666666554322223445555666677788888888877
Q ss_pred --------HHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---C--CCCChHhHHHHHHHHhhccccc-
Q 014502 309 --------TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG---L--SFKSAEDVEMVICSYFRCAAYD- 374 (423)
Q Consensus 309 --------~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~--~~~~~~~~~~l~~~~~~~~~~~- 374 (423)
.+.+.+..|..+ ..++..|.+.++.+.|..++++....- . .+.-...+.-+...-.+.|..+
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V----~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTV----GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHhhhhhhhhhhhccChhHH----HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 666666666553 356666777777666666666554310 0 0111222233333344456653
Q ss_pred hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
+...+.+..+. .++|..+...++.+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 45555555542 356677777777777654 45555555443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=4.8e-05 Score=63.11 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH-HhcCC--HHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF-SSLGN--VDA 197 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~-~~~~~--~~~ 197 (423)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455556666665555543 3356667777777777777777777777666521 22444555555543 45555 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 244 (423)
|.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777776666533 55666666666667777777777777766543
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=3.2e-05 Score=60.58 Aligned_cols=100 Identities=7% Similarity=-0.139 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
....+...|++++|...|+...... +.+...+..+..++...|++++|...|+..... .|+.... +..+..++...
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a-~~~lg~~l~~~ 105 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEP-VYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHH-HHHHHHHHHHc
Confidence 3444455555555555555555432 224445555555555555555555555555552 2322221 44455555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHhH
Q 014502 335 DRLDDVEYSVGRMGKQGLSFKSAEDV 360 (423)
Q Consensus 335 g~~~~a~~~~~~m~~~~~~~~~~~~~ 360 (423)
|+.++|...|+...+ ..|+++..+
T Consensus 106 g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHH
Confidence 555555555555554 334444444
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9.2e-07 Score=50.06 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 247 (423)
.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00098 Score=60.58 Aligned_cols=234 Identities=10% Similarity=0.012 Sum_probs=153.6
Q ss_pred HHHhcCC-chhH-HHHHHHhh---hccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHH
Q 014502 45 SRLLQVP-VSQI-KTTLDSVD---IFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLI 115 (423)
Q Consensus 45 ~~l~~~~-~~~~-~~~~~~m~---~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~ 115 (423)
..+.+.| ++.. .+.|+.+. ..|-+|.. .+++- +...+..++... -+++...+. |+...+...+
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~----yl~THPlp~~RIa~lr~r----a~q~p~~~~~d~~~~~~~~~r~ 281 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPE----YLLTHPLPEERIADLRNR----AEQSPPYNKLDSPDFQLARARI 281 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCCh----HHhcCCCchhHHHHHHHH----HHhCCCCCCCCCccHHHHHHHH
Confidence 3445555 3332 55555554 44444443 23333 455555565555 455554444 5666666666
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCC
Q 014502 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGN 194 (423)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~ 194 (423)
........-..+-.++.+..+. -....+.-....+...|++++|+..++.+... .|+. .-.......+.+.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk 355 (484)
T COG4783 282 RAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANK 355 (484)
T ss_pred HHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence 6555444434444444333331 12333333344456689999999999998862 4554 445555688999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|+..+++..... +-|...|..+..+|...|+..++..-..
T Consensus 356 ~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 356 AKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred hHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 99999999999887 444 5666777889999999999999998887654 6678899999999999998888766543
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
+.|...|++++|...+....+.
T Consensus 433 ------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 ------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 3455678888888877777664
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00048 Score=68.80 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=142.2
Q ss_pred cCCcC-hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHH-------------
Q 014502 66 AFNSS-QFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV------------- 130 (423)
Q Consensus 66 g~~p~-~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------- 130 (423)
.+.|+ ...|..|+..+ ..+++++|.++. +.-....+.....|-.+...+.+.++.+.+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDIC----EEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence 34443 56777888885 888999999984 444444443444444444466666666655544
Q ss_pred -----HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 131 -----FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205 (423)
Q Consensus 131 -----~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 205 (423)
.+.|... .-+...+-.+..+|-+.|+.++|..+|+++.+ .. +-|..+.|.+.-.|... ++++|.+++.+.
T Consensus 101 ~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 101 IVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2222221 11235677788899999999999999999998 33 55778899999999999 999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccCH
Q 014502 206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINE 284 (423)
Q Consensus 206 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~ 284 (423)
... +...+++.++.+++.++.... |+.. +....+.+.+... |..--.
T Consensus 176 V~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 176 IYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHH---------------HHhhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhccchhH
Confidence 754 666778888888888887653 3221 2222222333222 222334
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 014502 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA 332 (423)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~ 332 (423)
.++..+...|-+.++++++..+++.+.+.. |+..-. ..-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a-~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKA-REELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--Ccchhh-HHHHHHHHH
Confidence 455556666777777777777777777633 332211 444555554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00052 Score=62.31 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 014502 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSL 149 (423)
Q Consensus 71 ~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 149 (423)
..-|..-+..+..+.+++|+.. ++.+....+.|+.........+.+.++.++|.+.++.+... .|+ ...+-.+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~----l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKL----LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 3444455555555555555555 33444444444454555555555555555555555555544 333 3344445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 201 (423)
..+|.+.|++.+|+.+++.... ..+-|...|..|-.+|...|+..++..-
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 5555555555555555555543 2234445555555555555555544443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00057 Score=57.16 Aligned_cols=197 Identities=14% Similarity=0.080 Sum_probs=130.4
Q ss_pred CCHhHHHHHHHHHhcCCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAM-HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 184 (423)
|.......+.......++.+.-+ ++.+.+.......+......-...|++.|++++|++...... +......
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al 142 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAAL 142 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHH
Confidence 34444444444444444433333 334444443333333444445567889999999999887622 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
=+..+.+..+++.|.+.+++|.+.. +..|.+-|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++.
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 4556678889999999999998753 55666656555554 46789999999999654 4789999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-DELEEQLETLTKCN 314 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 314 (423)
..|++++|..++++.+..... ++.+...++.+-...|.. +-..+.+.+++...
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 999999999999999987543 555555555544455554 45567777777643
No 126
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=1.9e-05 Score=72.22 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=77.1
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 183 (423)
.+......+++.+....+++.+..++-+.... ....-..|..++|+.|.+.|..++++.+++.=.. .|+.||..++|
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHH
Confidence 35555666666666666677777766666654 1111223445777777777777777777766666 67777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 227 (423)
.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777666665555666666555555554
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.7e-06 Score=49.28 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (423)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554444
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0026 Score=55.47 Aligned_cols=146 Identities=10% Similarity=0.105 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHH
Q 014502 266 DRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~ 344 (423)
.-|.+.|+-.-.++..-|.. --.++..++.-..++++....++.+...-...|... + .+..+++..|++.+|+++|
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn--~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN--L-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh--h-HHHHHHHHhcChHHHHHHH
Confidence 34555554444444433322 233444455555666777777766665433333332 3 3677888888888888888
Q ss_pred HHHHhCCCCCCChHhH-HHHHHHHhhccccc-hHHHHHHHHhCCCcccH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 345 GRMGKQGLSFKSAEDV-EMVICSYFRCAAYD-RLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 345 ~~m~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
-++....+. +..+| ..|..+|.+++.++ +.+.+..+ .-+.+. .....+..-|.+++.+--|-+.|+++..
T Consensus 417 ~~is~~~ik--n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 417 IRISGPEIK--NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hhhcChhhh--hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 776543332 45556 45567778888776 45444332 212222 2234555677788888777777776643
No 129
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.24 E-value=1.7e-05 Score=72.47 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=105.0
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014502 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ 215 (423)
Q Consensus 137 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 215 (423)
.+.+.+......+++.+....+++++..++.+.+... ....-..|.+++++.|.+.|..+.+++++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456678888888998888889999999999888732 121224466799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (423)
++|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998888777788888777777665
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.007 Score=59.99 Aligned_cols=203 Identities=11% Similarity=0.083 Sum_probs=99.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG--IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 184 (423)
|+.-....+.++...+-+.+-.++++++.-.. +.-+...-|.+|....+.. .....+..+++-. .. .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdn-yD-a~~------ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDN-YD-APD------ 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhcc-CC-chh------
Confidence 56666677777787888888888887775421 1222334455555554443 3344455555533 11 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
+...+...+-+++|..+|+..- .+....+.||. .-+..|.|.++-++.. .+..|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 2233444555666666665542 23444444443 2234444444433321 12445555555555555
Q ss_pred HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (423)
Q Consensus 265 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~ 342 (423)
+.+|.+-|-+ ..|+..|..+++...+.|.+++-.+.+...+++...|...+ .||-+|++.++..+.++
T Consensus 1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~----eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS----ELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH----HHHHHHHHhchHHHHHH
Confidence 5555443321 12344455555555555555555555555555444444432 45555555555544443
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=6.4e-05 Score=68.44 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+. .+.|......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 444555555566666666666666552 22 3334555555566666666666666541 22344444444455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.++.+.|+++.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666666654211 33466666666666666666666665553
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=3e-06 Score=47.91 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 212 (423)
+|+.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.19 E-value=0.0034 Score=54.56 Aligned_cols=299 Identities=8% Similarity=0.025 Sum_probs=209.1
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH-
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL---ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD- 183 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~- 183 (423)
+.-.--+...+.-.|++..|+.-|....+- |+..|-++ ...|...|+...|+.=+....+ .+||-..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARi 110 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHH
Confidence 333444566677788999999999888775 44455444 4578888999999988888876 468853322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH----------H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQT----------Y--ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 249 (423)
.-...+.+.|.+++|..=|+...+....-+ ... | ...+..+.-.|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 123567899999999999999998743111 111 1 223445667899999999999998864 4567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH--HHHHH
Q 014502 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGI 327 (423)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~~~l 327 (423)
..|..=..+|...|++..|+.=++...+..- .+..++-.+-..+...|+.+.+....++..+ ..|+...+ .|..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence 7777788899999999999988887776643 3555666677888899999999999999888 45765542 12211
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHhCCCCCC--ChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCccc-HHHH
Q 014502 328 ---------IRLYALSDRLDDVEYSVGRMGKQGLSFK--SAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLR-RATY 394 (423)
Q Consensus 328 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~-~~~~ 394 (423)
+......++|.++.+..+...+.....+ ....+..+-.++...+++ +++....+.+. +.|| ..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHH
Confidence 2334566778888887777766432211 123344556666667777 67777766665 3454 8888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 395 DFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.-=.++|.-...++.|+.=|+.-.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 8888899888899999888877654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=0.00011 Score=56.94 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=56.9
Q ss_pred hCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHh
Q 014502 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT 181 (423)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 181 (423)
...+.+......+...+.+.|++++|.+.|+.....+ +.+...|..+..++...|++++|...+++..+ . .+.+..+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~ 87 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-L-DPDDPRP 87 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCChHH
Confidence 3333344445555555566666666666666655543 22455555666666666666666666665554 1 1333444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
+..+...+...|++++|.+.|+...+.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555566666666666666555554
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0027 Score=52.87 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=115.7
Q ss_pred CCChhHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH
Q 014502 121 VQNVPFAMHVFTSMEAQ---G-IKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 195 (423)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++..+ ++-+..+-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 34566666666666532 3 344443 4566666777778888888888887763 222222222222233446778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (423)
++|+++++.+.+.+.. |..+|-.=+-..-..|+.-+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888777633 5666665555556667777777766666554 3567778888888888888888888888887
Q ss_pred HhCCCccCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 014502 276 LGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLTK 312 (423)
Q Consensus 276 ~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 312 (423)
.-.. |.+...+..+.+.+...| +++.|.+.+....+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7642 233444445555444433 35567777777776
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.00017 Score=55.97 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
+...+.+.|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3333444444444444444443322 1223333344444444444444444444443332 2223333334444444444
Q ss_pred HHHHHHHHHHHHh
Q 014502 300 VDELEEQLETLTK 312 (423)
Q Consensus 300 ~~~a~~~~~~~~~ 312 (423)
+++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.16 E-value=4e-05 Score=55.05 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=34.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKAR--------DFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (423)
-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333555555555555555554 445555555554444321 122334455555555555555555555544
Q ss_pred H
Q 014502 259 L 259 (423)
Q Consensus 259 ~ 259 (423)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 4
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00023 Score=56.00 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
..+...|++++|...|+.... ....|+. ...-.|...+...|++++|+..++...... .....+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence 444445555555555555544 2211111 122223444455555555555554432221 12333444445555555
Q ss_pred CHHHHHHHHH
Q 014502 229 DFDSVDRFYE 238 (423)
Q Consensus 229 ~~~~a~~~~~ 238 (423)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555554
No 139
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.12 E-value=0.0019 Score=57.57 Aligned_cols=110 Identities=11% Similarity=0.176 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 295 (423)
+.+..|.-+...|+...|.++-.+.+ .||...|...+.+++..++|++..++... . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45555777788888888888766654 58888899999999999999987776432 1 13366888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
+.|+..+|..+...+ + +..-+..|.++|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~------~------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC------C------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999988888772 2 334577789999999988775553
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.12 E-value=3e-06 Score=46.71 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 422 (423)
.+|+.++++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999999986
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00029 Score=64.30 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=54.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
++..+...++++.|..+|+++.+. .|+. ...+.+.+...++-.+|.+++++..+... -+......-...|.+.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 333444445555555555555541 1332 22244444444555555555555443321 13333333344444555
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 229 DFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFL 275 (423)
Q Consensus 229 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (423)
+++.|+++.+++.+. .|+. .+|..|..+|...|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555554443 2332 24555555555555555555444433
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=0.0018 Score=63.75 Aligned_cols=156 Identities=8% Similarity=-0.011 Sum_probs=90.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+-+.+...|+..| .. -.+....=...|..|...|+...+-..|.+.|+..-+..- .+...+....+.|++..+++
T Consensus 469 ~~rK~~~~al~al---i~-alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 469 CMRKNSALALHAL---IR-ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HhhhhHHHHHHHH---HH-HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHH
Confidence 3344455555553 22 2223333355688888888877777788888887776532 25567777788888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.|..+.-..-+......-...|....-.|.+.++...|+..|+...+..+. |...|..+..+|.+.|.+..|.++|.+.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 887773332221100111122333334455566666666666666655433 5666666666666666666666666555
Q ss_pred HH
Q 014502 241 MS 242 (423)
Q Consensus 241 ~~ 242 (423)
..
T Consensus 623 s~ 624 (1238)
T KOG1127|consen 623 SL 624 (1238)
T ss_pred Hh
Confidence 43
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.09 E-value=0.0014 Score=60.30 Aligned_cols=153 Identities=8% Similarity=0.065 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
.+...+.+++++..-..--+.+|...|+.-.+..-+..|..+|.+..+.+..+ +++.+++++.-+| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45566666666654222234568888888888888999999999999988777 7888888888776 578889999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
--++. +..++..-...++.+...++-..|..+|+.....+..|+....+|..+++.-..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 76654 3345555567888889999999999999999998888888878899999999999999999998887765
No 144
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0025 Score=58.62 Aligned_cols=319 Identities=11% Similarity=0.071 Sum_probs=197.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS-AVFNSLICACLCSGDV 159 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 159 (423)
++.|+++.|+..| ..-....++|...|..-..+|++.|++++|.+=-.+-.+ +.|+- -.|.....++.-.|++
T Consensus 13 ~s~~d~~~ai~~~----t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 13 FSSGDFETAIRLF----TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccccHHHHHHHH----HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 7899999999994 555566677889999999999999999998876655554 46664 4899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHhc------
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM---NKWYAANIAA---GFSVNVQTYESLIHGSLKA------ 227 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~---~~~~~~~~~~~li~~~~~~------ 227 (423)
++|+.-|.+-.+. -+-|...++-+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999988762 133455666677666111000000 0111111100 0001122333343333221
Q ss_pred -CC---HHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 014502 228 -RD---FDSVDRFYEE-----MMSLG-------IIP------------S----------IPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 228 -g~---~~~a~~~~~~-----m~~~~-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~ 269 (423)
.+ ...+.-++.. +...| ..| | ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01 1111111100 00001 111 0 112445667777788899999
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH----HHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL----LHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
+-+....+.. -+..-++..-.+|...|.+.+....-+...+.|...-.. ...+..+-.+|.+.++.+.++..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 9998888754 455666777788999999888877777766655322111 1112223346667788889999888
Q ss_pred HHHhCCCCCCChHhHHH---------------------------HHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHH
Q 014502 346 RMGKQGLSFKSAEDVEM---------------------------VICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFL 397 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~---------------------------l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l 397 (423)
+....... |+..+. =...+.+.|++ .++..|.+++... +-|...|.--
T Consensus 323 kaLte~Rt---~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 323 KALTEHRT---PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHhhhhcC---HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 87765443 333221 13445566777 5788888888765 4468889999
Q ss_pred HHHHHhcCChhHHHHH
Q 014502 398 VAGYRRAGLSGKLDSV 413 (423)
Q Consensus 398 ~~~~~~~g~~~~a~~~ 413 (423)
.-+|.+.|.+..|++=
T Consensus 399 Aac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999999988873
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=7.6e-05 Score=53.67 Aligned_cols=81 Identities=21% Similarity=0.398 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCccCHHh
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARR--------KLDRVKSFLKFLLGGGWKINENM 286 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~ 286 (423)
|-...|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777778999999999999999999 899999999999887653 34467888888888889999999
Q ss_pred HHHHHHHHHh
Q 014502 287 AQKLVKCYCE 296 (423)
Q Consensus 287 ~~~li~~~~~ 296 (423)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.08 E-value=4.5e-06 Score=45.98 Aligned_cols=29 Identities=38% Similarity=0.597 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 244 (423)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 147
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0045 Score=59.97 Aligned_cols=24 Identities=4% Similarity=-0.047 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVIN 415 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~ 415 (423)
.....+.+.|.++|.+..|.+-|-
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHh
Confidence 456677888888888887766553
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.08 E-value=0.00083 Score=63.92 Aligned_cols=112 Identities=7% Similarity=0.148 Sum_probs=81.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
|.+-....+|.+|+.+++.++.+.. -..-|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3445566778888888887776542 23457788889999999999998885432 255578889999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
++|.++-++... |......|-+-..-+-+.|++.+|++++-.+
T Consensus 808 ~da~kla~e~~~----~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 808 EDAFKLAEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHHhcC----chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 999888776643 5555555777777778888888888877543
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.014 Score=57.11 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=36.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD 196 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 196 (423)
+.|+.++|..+++.....+.. |..|...+-.+|...|+.++|..+|++..+. .|+......+..+|.+.+++.
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444333 4445555555555555555555555555431 344444444445555555443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00093 Score=52.50 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 014502 223 GSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~ 242 (423)
.+...|++++|...|+....
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444444443
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.92 E-value=0.028 Score=55.23 Aligned_cols=224 Identities=9% Similarity=0.004 Sum_probs=140.0
Q ss_pred HHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC
Q 014502 45 SRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV 121 (423)
Q Consensus 45 ~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~ 121 (423)
+.+-+.....+......+.+. .|+ ..|..++.+ .+.|+.++|..+ ++........|..+...+-..|.+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~----Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKL----LEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHH----HhhhccCCCCchHHHHHHHHHHHHH
Confidence 333333444455555555332 232 345666666 588999999987 5665555556899999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC-------
Q 014502 122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN------- 194 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~------- 194 (423)
++.++|..+|++..+. .|+......+..+|++.+.+.+-.+.=-+|-+ .++-+...|=++++.....-.
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCccccc
Confidence 9999999999998876 67777888888889988887765555444443 223344455555554443211
Q ss_pred ---HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 195 ---VDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFY-EEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 195 ---~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (423)
..-|.+.++.+.+.+ -.-+..-...-...+-..|++++|.+++ ....+.-..-+...-+--+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234666666666654 2112222222334455677788888887 33333333334444455566666777777777
Q ss_pred HHHHHHHhCC
Q 014502 270 SFLKFLLGGG 279 (423)
Q Consensus 270 ~~~~~~~~~g 279 (423)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 7777777665
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00038 Score=61.25 Aligned_cols=130 Identities=7% Similarity=0.112 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (423)
Q Consensus 180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (423)
.+|..+++..-+.+..+.|.++|.+.++.+. .+...|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3556666666666666666666666664321 122223222222 22234555566666666543 23445556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+.+.|+.+.|..+|++.... +.++. ..|...++.=.+.|+++.+..+.+.+.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654 22222 3566666666666666666666666655
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.83 E-value=0.00071 Score=55.15 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 142 DSAVFNSLICACLC-----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216 (423)
Q Consensus 142 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (423)
|..+|..+++.|.+ .|.++-....+..|.+ .|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 66666666666653 3667777777777777 7777777777777776654 2221 01111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
... .-.+-+-|++++++|...|+.||..|+..+++.|++.+.
T Consensus 112 ----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 112345566777777777777777777777777665544
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00018 Score=58.50 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014502 176 KPNSKTYDAFISGFSSL-----GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP 250 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 250 (423)
..|..+|..++..|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 46777888888777654 5667777777888888888888888888876654 2221 2211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
...... -.-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 108 fQ~~F~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111 1124567789999999999999999999999999988766
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0014 Score=49.25 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 289 KLVKCYCELGRVDELEEQLETLTKCNQSPE--VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+..++.+.|++++|...++.+........ ... +..+...+...|+.++|...++++.+
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA--LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH--HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344444444444444444444443221100 111 33344444444555555555544444
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00093 Score=47.45 Aligned_cols=11 Identities=45% Similarity=0.682 Sum_probs=4.0
Q ss_pred CCHHHHHHHHH
Q 014502 157 GDVVTALSLFE 167 (423)
Q Consensus 157 g~~~~A~~~~~ 167 (423)
|++++|...++
T Consensus 14 ~~~~~A~~~~~ 24 (100)
T cd00189 14 GDYDEALEYYE 24 (100)
T ss_pred hcHHHHHHHHH
Confidence 33333333333
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00095 Score=47.40 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
.+...+...+++++|.+.++...+.. +.+..++..+...+...|+.++|...++..
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444444433322 112223333334444444444444444433
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.002 Score=48.49 Aligned_cols=97 Identities=14% Similarity=0.020 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCCHHhHHHHHHH
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISG 188 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~ 188 (423)
..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|.+.|+.......- +.....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33344444444444444444444432110 00223333444444444444444444444331100 0012233333344
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 014502 189 FSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~ 208 (423)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444444444444444443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.014 Score=51.60 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHhc-CCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHHHHHH
Q 014502 258 GLCAR-RKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV----LLHFFSGI 327 (423)
Q Consensus 258 ~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~~~l 327 (423)
.|-.. |++++|.+.|++..+. |.+. -..++..+...+.+.|++++|..+|+++.......+. .-..|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 33344 5666666666655432 2110 1224455566666777777777777766553221110 00112233
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 014502 328 IRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 328 i~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
+-++...|++..|.+.+++..+.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33455566777777777766543
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.037 Score=49.59 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=121.6
Q ss_pred CCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 177 PNSKTYDAFI-SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG--SLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 177 p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
|...+|..+- .++.-.|+.++|.++-...++.. ....+...+++ +.-.++.+.|...|++-...+ ||-..-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4455665553 56677899999988877777653 22334444443 345678888888888776543 4433211
Q ss_pred H---H----------HHHHHhcCCHHHHHHHHHHHHhCC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 254 K---V----------LEGLCARRKLDRVKSFLKFLLGGG---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 254 ~---l----------i~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
. . -+-..+.|++..|.+.|.+.+... ..|+...|-.......+.|+.++|..--+...+ +.|
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~ 318 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDS 318 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCH
Confidence 1 1 123467899999999999988742 334555666666777889999999999888877 334
Q ss_pred chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (423)
.-.- .|..-..++...++|++|++-|++..+..-.+..-.++.....++-+..+
T Consensus 319 syik-all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 319 SYIK-ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 3221 14444566677789999999998887755444445555555555554443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.002 Score=52.06 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
.|..+...+...|++++|+..|++.......+ ...+|..+...+.+.|++++|++.++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555555444332111 122444444555555555555555554443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0056 Score=49.66 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555554443322111 23444444555555555555555555444
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0014 Score=57.73 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
+|..+++...+.+.++.|..+|.+..+.+. .+..+|-..... |...++.+.|.++|+...+. ++.+...|...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 455555555555566666666666654321 122333332222 22234455566666665542 34445555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
+.+.|+.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665544 2222 3566666555566666666666665554
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.031 Score=46.81 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=140.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhC-CCCCH-hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKG-NESCL-DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (423)
+...++++.++++..+...+..+ -.++. ..|..++-+....|+.+.|...++++..+- +-+..+-..-.--+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 66778888888877766666555 22554 457778888889999999999999988763 2232222222223445789
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
+++|.++|+...+. . +-|..++..=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.--++
T Consensus 102 ~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999973 2 556777877777777778877888888887776 34599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 014502 239 EMMSLGIIPSIPILEKVLEGLCA---RRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 278 (423)
++.-.. +.+..-|..+.+.+.- ..+.+.+.++|.+.++.
T Consensus 179 E~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 998753 2334445555555433 34567788889888875
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00015 Score=50.84 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=6.5
Q ss_pred HHHHHccCCHHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLF 166 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~ 166 (423)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00021 Score=50.13 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 014502 255 VLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~ 274 (423)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444433
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.048 Score=48.20 Aligned_cols=134 Identities=12% Similarity=0.161 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHH
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMS----LGIIPS--IPILEKV 255 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l 255 (423)
...+..|...|++..|-+++.++- ..|-+. |++++|++.|++..+ .| .+. ...+..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~ 161 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHH
Confidence 333445556666665555544433 344455 778888887776643 23 222 2346677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCc-----cCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHH
Q 014502 256 LEGLCARRKLDRVKSFLKFLLGGGWK-----INEN-MAQKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGI 327 (423)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~l 327 (423)
...+.+.|++++|.++|++....... .+.. .+-..+-++...|+...|.+.++...... +..+....+...|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 77788889999999999888765322 1221 23333446667889999999999887643 2222222224455
Q ss_pred HHHHH
Q 014502 328 IRLYA 332 (423)
Q Consensus 328 i~~~~ 332 (423)
+.+|-
T Consensus 242 ~~A~~ 246 (282)
T PF14938_consen 242 LEAYE 246 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0027 Score=51.31 Aligned_cols=80 Identities=5% Similarity=-0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 366 (423)
+..+...+...|++++|...|+........|.....+|..+...|...|++++|+..+++..+ +.|..+..+..+...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i 115 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 344444444455555555555554432212211111244445555555555555555555444 223334444444444
Q ss_pred Hh
Q 014502 367 YF 368 (423)
Q Consensus 367 ~~ 368 (423)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.53 E-value=0.013 Score=47.50 Aligned_cols=91 Identities=9% Similarity=0.000 Sum_probs=61.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 184 (423)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+. .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 445577777778888888888888888776533222 356777788888888888888888887762 1223455666
Q ss_pred HHHHHHhcCCHHHHH
Q 014502 185 FISGFSSLGNVDAMN 199 (423)
Q Consensus 185 li~~~~~~~~~~~a~ 199 (423)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666777766654443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0038 Score=57.09 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=76.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 229 (423)
...+...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|+..+++....... +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 45566788999999999888862 2345667777788888899999999999888877533 67778888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILEKVL 256 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (423)
+++|...|++..+. .|+.......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999998888775 35544444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.055 Score=46.49 Aligned_cols=179 Identities=13% Similarity=0.009 Sum_probs=85.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
.|..-......|++++|.+.| ++.....+.+... .-.+..++-+.+++++|...|++..+.-..-...-|...
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f----~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQL----EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444444446777777777774 3443333322222 234556667777777777777777665222111223333
Q ss_pred HHHHHc--cC---------------C---HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 150 ICACLC--SG---------------D---VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 150 i~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 209 (423)
+.+.+. .+ + ..+|+..|+++.+ -|=...-..+|.+.+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH-
Confidence 333221 00 1 1122233333332 222222334444333333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (423)
Q Consensus 210 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (423)
.-.. --.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+
T Consensus 174 --la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0000 113345566667777777666666653 22333445556666666666666666655544
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.077 Score=47.44 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS 366 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 366 (423)
.+..+.-+...|+...|.++-.+. -.|+..- |-.-+.+|+..++|++..++.+. .. +|..|..++.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrf--w~lki~aLa~~~~w~eL~~fa~s----kK---sPIGyepFv~~ 246 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRF--WWLKIKALAENKDWDELEKFAKS----KK---SPIGYEPFVEA 246 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHH--HHHHHHHHHhcCCHHHHHHHHhC----CC---CCCChHHHHHH
Confidence 333444455566665555554433 1255444 66666666666666665554322 11 25566666666
Q ss_pred HhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502 367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI 414 (423)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (423)
|.+.|....+..|... ..+..-+..|.+.|++.+|.+.-
T Consensus 247 ~~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHH
Confidence 6666655333333222 11234445555555555555443
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.45 E-value=0.0051 Score=56.23 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=73.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..+++++|++. +++.....+.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 13 ~~~~~~~~Ai~~----~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 13 FVDDDFALAVDL----YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 678888888888 556666666778888888888888888888888888888763 225667888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+|+..|++..+ +.|+.......+
T Consensus 88 eA~~~~~~al~---l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGAS---LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHH
Confidence 88888888876 245554444444
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.021 Score=54.70 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=40.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 243 (423)
+...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.|++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555555555555677777777777766653 46666666677777777777777777666543
No 175
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.43 E-value=0.091 Score=47.85 Aligned_cols=369 Identities=11% Similarity=0.048 Sum_probs=179.2
Q ss_pred cHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCC--CH------
Q 014502 40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNES--CL------ 108 (423)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~--~~------ 108 (423)
.+.+|+++--.+.......+.+..+.-+ ...|-.+..+ ++.+.+++|++.+..+.++......| |.
T Consensus 49 ~grilnAffl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~ 125 (549)
T PF07079_consen 49 GGRILNAFFLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF 125 (549)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence 3455666655555444555555543322 2334455555 68899999999987656664443332 22
Q ss_pred ---hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccC---------------CHHHHHHHH
Q 014502 109 ---DEYACLIALSGKVQNVPFAMHVFTSMEAQGIK----PDSAVFNSLICACLCSG---------------DVVTALSLF 166 (423)
Q Consensus 109 ---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g---------------~~~~A~~~~ 166 (423)
.-=+..++.+.+.|++.++..+++++..+=++ =+..+||.++-.+.++= .++-+.-..
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 22356677888999999999999998765333 47788888666665431 122222222
Q ss_pred HHHHhc-----CCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 167 EIMVSS-----EEYKPNSKTYDAFISGFSSLG--NVDAMNKWYAANIAAGFSVNV-QTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 167 ~~m~~~-----~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
.+|... ..+.|.......++....-.. +..--.++++.-...-+.|+- -+...++..+.+ +.+++..+-+
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 333221 012233333333332222111 111111222222222233331 111222222222 3444444433
Q ss_pred HHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh----------------------------
Q 014502 239 EMMSLGIIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM---------------------------- 286 (423)
Q Consensus 239 ~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~---------------------------- 286 (423)
.+....+.+ =..+|..++....+.++...|.+.+.-+... +|+...
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 332221111 1234555555556666666665555544331 121111
Q ss_pred -----------------HHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHH----HHHHHhc---CChh
Q 014502 287 -----------------AQKLV---KCYCELGR-VDELEEQLETLTKCNQSPEVLLHFFSGI----IRLYALS---DRLD 338 (423)
Q Consensus 287 -----------------~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~l----i~~~~~~---g~~~ 338 (423)
-..|+ .-+-+.|. -++|.++++.+.+ +.|....+ -|.+ =..|... ..+.
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec-~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIEC-ENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHH-HHHHHHHHHHHHHHHHhhhhHH
Confidence 01111 11222333 5566666666666 33333221 1111 1122111 2233
Q ss_pred HHHHHHHHHHhCCCCCCC---hHhHHHHH--HHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHH
Q 014502 339 DVEYSVGRMGKQGLSFKS---AEDVEMVI--CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 339 ~a~~~~~~m~~~~~~~~~---~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
+-..+-+-+.+.|+.|.+ ...-|.|. .-+..+|+......+..-+. .+.|++.+|..+.-++....++++|+.+
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~-~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT-KIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344444455665432 12223332 33445666655444444443 3578999999999999999999999999
Q ss_pred HHHHHh
Q 014502 414 INEMKF 419 (423)
Q Consensus 414 ~~~m~~ 419 (423)
+.+++-
T Consensus 518 l~~LP~ 523 (549)
T PF07079_consen 518 LQKLPP 523 (549)
T ss_pred HHhCCC
Confidence 988753
No 176
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.098 Score=50.57 Aligned_cols=241 Identities=12% Similarity=0.123 Sum_probs=131.2
Q ss_pred hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCC---CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 014502 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146 (423)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 146 (423)
..+|..+-+- +..|+++.|..+++ ++.-....+| +..-+...+.-+.+.|+.+....++-.|... .+...+
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle--~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLE--LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHh--cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 4566666555 89999999999864 3322222222 5556677788888889988888888777653 122222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc---------------------------------CCCCCCHHhHHHHHHHHHhcC
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVSS---------------------------------EEYKPNSKTYDAFISGFSSLG 193 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------~~~~p~~~~~~~li~~~~~~~ 193 (423)
...++ +.-.|..+|.+..+. .+..|+ ....-+.+.+..
T Consensus 582 ~~~l~------~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk 652 (829)
T KOG2280|consen 582 FMTLR------NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSK 652 (829)
T ss_pred HHHHH------hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhh
Confidence 22221 111222222222210 111222 222333333333
Q ss_pred CHHH----------HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 194 NVDA----------MNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 194 ~~~~----------a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (423)
...- -+++.+.+... |..-...+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh
Confidence 3111 11122222211 222233334445555666777777777665554 57777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~ 342 (423)
+++++-+++-+.... +.-|..++.+|.+.|+.++|...+..... +.-...+|.+.|++.+|.+
T Consensus 729 ~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHH
Confidence 777776665443331 23466677777788888877777765432 2235666777777777766
Q ss_pred HHHH
Q 014502 343 SVGR 346 (423)
Q Consensus 343 ~~~~ 346 (423)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 6544
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.026 Score=44.00 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 303 (423)
+...|++++|.++|+-+...+ .-+..-|-.+.-.+-..|++++|+..|........ .|+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 344455555555555444332 11222233333344444555555555555544432 2344444444555555555555
Q ss_pred HHHHHHHHh
Q 014502 304 EEQLETLTK 312 (423)
Q Consensus 304 ~~~~~~~~~ 312 (423)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.082 Score=45.44 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=86.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTY---DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
....+...|++++|.+.|+++... -|+. ..- -.+..++.+.+++++|...+++..+.-+.-...-|...+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 344445577777777777777652 2332 221 234466677777777777777777653322222333333333
Q ss_pred Hh--cC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH
Q 014502 225 LK--AR---------------DF---DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE 284 (423)
Q Consensus 225 ~~--~g---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 284 (423)
+. .+ |. .+|++.|+++.+ -|=...-..+|...+..+... .-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HHH
Confidence 21 10 11 122233333322 222222333444333333221 000
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
. --.+.+.|.+.|.+..|..-++.+.+.-............++.+|...|..++|.++...+
T Consensus 177 ~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 Y-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred H-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1134555667777777777777766543222222223456667777777777776665544
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.01 Score=46.23 Aligned_cols=88 Identities=8% Similarity=-0.032 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
.+...|++++|.++|+-+....+. +..-|-.|.-++-..|++++|+..|......+ +-|...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 334444444444444444443322 33334444444444444455544444444433 1233344444444444444444
Q ss_pred HHHHHHHHHh
Q 014502 268 VKSFLKFLLG 277 (423)
Q Consensus 268 a~~~~~~~~~ 277 (423)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.018 Score=43.07 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 335 (423)
++-..|+.++|..+|++....|.... ...+-.+...|...|++++|..++++.......++....+...+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33445555555555555555554332 1233344455555555555555555554432110000000112223445555
Q ss_pred ChhHHHHHHHHH
Q 014502 336 RLDDVEYSVGRM 347 (423)
Q Consensus 336 ~~~~a~~~~~~m 347 (423)
+.++|++.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 555555555443
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0041 Score=53.19 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=58.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCHHH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~ 302 (423)
..+.++|++|+..|.+..+.. +-|..-|..=..+|.+.|.++.|++=.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 556677777777777766643 233444555566677777777776666665553 233 3466777777777777777
Q ss_pred HHHHHHHHHhCCCCCchHH
Q 014502 303 LEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 303 a~~~~~~~~~~~~~p~~~~ 321 (423)
|.+.|++..+ +.|+..+
T Consensus 168 A~~aykKaLe--ldP~Ne~ 184 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNES 184 (304)
T ss_pred HHHHHHhhhc--cCCCcHH
Confidence 7777776666 5566554
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.032 Score=53.57 Aligned_cols=144 Identities=15% Similarity=0.031 Sum_probs=100.1
Q ss_pred CCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhc--------CCHHHHHHHH
Q 014502 137 QGIKPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSL--------GNVDAMNKWY 202 (423)
Q Consensus 137 ~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------~~~~~a~~~~ 202 (423)
.+.+.+...|...+++.... ++...|.++|++..+. .|+- ..|..+..++... .++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456888888888875543 2367889999988873 5663 3444333322221 1244555555
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 014502 203 AANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281 (423)
Q Consensus 203 ~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 281 (423)
.+.... ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++.... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 554443 123355778877666677899999999999998875 78889999999999999999999999999875 3
Q ss_pred cCHHhH
Q 014502 282 INENMA 287 (423)
Q Consensus 282 ~~~~~~ 287 (423)
|...+|
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444443
No 183
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.29 E-value=0.0044 Score=46.86 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=51.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEA---------------QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
|..++..++.++++.|+++....+.+..-. ....|+..+..+++.+|+.+|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456677778888888887777777755421 12345566666666666666666666666666655
Q ss_pred cCCCCCCHHhHHHHHHHHH
Q 014502 172 SEEYKPNSKTYDAFISGFS 190 (423)
Q Consensus 172 ~~~~~p~~~~~~~li~~~~ 190 (423)
..+++-+..+|..|++-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 5555555566666654433
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.025 Score=42.34 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHh-HHHHHHH
Q 014502 115 IALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKT-YDAFISG 188 (423)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~-~~~li~~ 188 (423)
..++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|+.++++.... .|+ ... ...+--+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence 3455566777777777777777665543 234455566666777777777777776652 133 111 1122235
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
+...|+.++|++++-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5666777777777665542 23334444444443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0014 Score=43.71 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.|++++|+++|+++...... +...+..+..+|.+.|++++|.++++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444433222 33333334444444444444444444433
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.12 E-value=0.14 Score=46.58 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
=+.+|...|+...+..-.+.|..+|-+..+.| +.++++.++++|..++ .|+...|.++|+--... ++.+...-+..+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 35667778888888888888888888888877 6678888888887665 57778888888865553 333333335566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 371 (423)
..+...++-+.|..+|+...++- ..+....+|..+|+.-..-|+...+..+=++|.+ ..|. ..+......-|.-..
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQ-en~~evF~Sry~ik~ 549 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQ-ENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCc-HhHHHHHHHHHhhhc
Confidence 77778888888888888554421 1122222388888888888888888877777766 2222 444444444444433
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0016 Score=43.39 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=35.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
+.|++++|.++|+++...... +...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 456666666666666554222 5556666666666666666666666666652 3554444433
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.11 E-value=0.0033 Score=41.43 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=27.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
..+.+.|++++|.+.|+.+.+.. |+.... +..+...+...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a-~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEA-WYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555533 332221 45555555555555555555555544
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.15 Score=43.15 Aligned_cols=132 Identities=10% Similarity=0.044 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH---
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI--- 186 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li--- 186 (423)
+-+.++..+.-.|.+.-...++.+..+...+-++.....+.+.-.+.||.+.|...|++..+ ..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHhh
Confidence 34555555556666666666666666655444555666666666666666666666665554 22233333333332
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 187 --SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 187 --~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 243 (423)
..|.-.+++.+|...+.+....+.. |...-|.=.-+..-.|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455566666666666555322 4444443333334456666666666666554
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.039 Score=43.25 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN 205 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 205 (423)
...++..+...|++++|.++.+.+... -+-|...|..+|.+|...|+..+|.++|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444555555555555555441 1234445555555555555555555555443
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.25 Score=44.25 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=145.0
Q ss_pred ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHH
Q 014502 70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAV 145 (423)
Q Consensus 70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 145 (423)
|..-.-.++.+ .-.|++++|.+- |+.|......-.--...|.----+.|+.+.|.+.-++.-+. -|. .-.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~k----feAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA 190 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKK----FEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWA 190 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHH----HHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchH
Confidence 33333344444 456666666666 45554221111122333333344556666666666555443 222 345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHH--h-cCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFS--S-LGNVDAMNKWYAANIAAGFSVNVQTYE-S 219 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~--~-~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ 219 (423)
+.+.+...+..|+++.|+++++.-+...-+.++..- -..|+.+-. . ..+...|...-.+..+ +.||..--. .
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 666677777777777777777666553334444321 122222211 1 1223344433333332 355543322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccC-HHhHHHHHHHHHhc
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKIN-ENMAQKLVKCYCEL 297 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~~ 297 (423)
-..++.+.|+..++-.+++.+-+....|++. .. ..+.+.|+.- ..-+++..+. .++|| ......+..+-...
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA--LL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH--HH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 3467899999999999999998876555532 22 2234555543 2223322211 13343 44555667777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCC
Q 014502 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~ 353 (423)
|++..|..--+.... ..|.... |..|.+.-... |+-.++...+-+.......
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~--~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESA--YLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhH--HHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 888887776666655 4576666 77777666544 8999999888887765443
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.97 E-value=0.11 Score=52.08 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
..++...+..-|+...+.. +-|...|..+..+|..+|++..|.++|.++..
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3344444444444444332 12334444444444444444444444444443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.13 Score=42.94 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 014502 71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ 137 (423)
Q Consensus 71 ~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 137 (423)
...|..-...+..|++.+|.+.|+. +....+ --..+.-.++.++-+.|+++.|...+++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~----l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEK----LIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHH----HHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH----HHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555777777777777443 333322 12344556667777777777777777776654
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.42 Score=46.46 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
-+.+--+..+...|+-.+|.++-.+.+ .|+... |-.=+.+++..++|++.+++-+.++. |.-|.-..
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~--~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFV 751 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL--WWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFV 751 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh--HHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHH
Confidence 344455566677888888888777664 377766 77778889999999988887766542 66777888
Q ss_pred HHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 365 CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
.+|.+.|+.+.+..|.-+.. + +.-.+.+|.+.|++.+|.++--+
T Consensus 752 e~c~~~~n~~EA~KYiprv~-----~---l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG-----G---LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccC-----C---hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999998865555544332 1 11577888888888888876544
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0055 Score=40.35 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=18.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.+.|++++|.+.|++..+.... +...+..+..++...|++++|...|++.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444443333211 3333333333333444444444443333
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.22 Score=47.90 Aligned_cols=235 Identities=12% Similarity=0.102 Sum_probs=139.2
Q ss_pred CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKP--------DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175 (423)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 175 (423)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=|.+ --|++++|.++|-+|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~dr---- 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADR---- 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccch----
Confidence 488888988888877777888888877655432 2211 11111122222 24788999998888765
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (423)
.| ..|..+.+.|++-.+.++++. .|-..| ...|+.+.+.+.....|++|.+.|..-..
T Consensus 763 -rD-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 763 -RD-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred -hh-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 12 346677777887665555432 221212 45788888888888888888888765422
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~ 331 (423)
-...+.++.+..++++...+...+ +.+....-.+.+++...|.-++|.+.+-+-. .| .+.+..|
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-------kaAv~tC 888 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-------KAAVHTC 888 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-------HHHHHHH
Confidence 113455666666666655554443 3344455667777788888787776664321 13 2335567
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCChHhH--------------HHHHHHHhhcccc-chHHHHHHHHh
Q 014502 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDV--------------EMVICSYFRCAAY-DRLDLFLDHIK 384 (423)
Q Consensus 332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--------------~~l~~~~~~~~~~-~~~~~~~~~~~ 384 (423)
...++|.+|.++-++..-.. ..+. ---|..+.+.|.. ++++++.+|.+
T Consensus 889 v~LnQW~~avelaq~~~l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77777777777765532111 1111 0124445555655 67777777764
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.017 Score=49.53 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=46.0
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 232 (423)
+.+.+++.+|+..|.+..+. .+-|.+-|..=-.+|++.|.++.|++=.+.....+.. ...+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 44455555555555555541 1223333444445555555555555555554443211 34455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 014502 233 VDRFYEEMMSLGIIPSIPIL 252 (423)
Q Consensus 233 a~~~~~~m~~~~~~p~~~~~ 252 (423)
|++.|++..+ +.|+..+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 5555554443 23444443
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.15 Score=43.12 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 237 (423)
..+..++.+++-.. .+.+.++.++.-.+.+.-....+.+..+...+.++.....|.+.-.+.||.+.|...|
T Consensus 164 ~~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 164 AEESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred chhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33555555554433 3455666666667777777777777777665566777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 238 EEMMSLGIIPSIPILEKVL-----EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 238 ~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
++..+..-+.|..+++.++ ..|.-.+++..|...+.++.... +-|...-|.-.-+..-.|+..+|.+.++.|.+
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665443344444444333 23445567777777777776653 23444444444444556778888888888877
Q ss_pred CC
Q 014502 313 CN 314 (423)
Q Consensus 313 ~~ 314 (423)
..
T Consensus 315 ~~ 316 (366)
T KOG2796|consen 315 QD 316 (366)
T ss_pred cC
Confidence 44
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.0098 Score=46.72 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPI 251 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 251 (423)
+...++..+...|++++|.++.+.+....+. |...|..+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455666666777777777777777766533 666777777777777777777777766632 366666554
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.82 E-value=0.0082 Score=40.03 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMV 170 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~ 170 (423)
+|..+...+...|++++|+..|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.026 Score=42.74 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
|..++..+|.++++.|+.+....+++.. .|+.++...-. +. --......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc---------cCCCCCCCCCHHHHHHHH
Confidence 4567788888888888888888887654 33333221000 00 111234566666667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMS-LGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~ 260 (423)
.+|+..|++..|+++.+...+ -+++.+..+|..|++-+.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777767777777776666644 355555666666665443
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.79 E-value=0.39 Score=43.60 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
.+-+. +..++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd--~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWD--VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHH--HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 44555 677888888888998888888888864
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.3 Score=46.66 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+...+..-+.+...+..|.++|.+|-. ...+++.....++|.+|..+-++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 444444444556667778888887754 44567777888888888888776544
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.21 Score=39.92 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CccCHHhH
Q 014502 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG---WKINENMA 287 (423)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~ 287 (423)
.|++..--.|..+..+.|++.+|...|++....-..-|....-.+.++....+++..|...++.+.+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 455555556666666777777777777666554444555666666666666677777777666665542 22332 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
-.+...|...|++.+|+..|+.....-..|..... |.. .+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~-Y~e---~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY-YAE---MLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH-HHH---HHHHhcchhHHH
Confidence 33556666677777777777766664333332221 322 344555554443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.0088 Score=39.88 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
|..+...+...|++++|+..|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333344444444444443333
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.46 Score=43.16 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=56.1
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCCCHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG---IKPDSAVFNSLICACLC---SGDVVTALSLFEIMVSSEEYKPNSK 180 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 180 (423)
+..+...++-.|....+++...++.+.+.... +.-+..+--...-++-+ .|+.++|++++..+.. ..-.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence 45556667777888899999999999988752 11123333344455566 7899999999988554 44567777
Q ss_pred hHHHHHHHH
Q 014502 181 TYDAFISGF 189 (423)
Q Consensus 181 ~~~~li~~~ 189 (423)
+|..+.+.|
T Consensus 219 ~~gL~GRIy 227 (374)
T PF13281_consen 219 TLGLLGRIY 227 (374)
T ss_pred HHHHHHHHH
Confidence 887776654
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.67 E-value=0.045 Score=47.50 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CccCHHhHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKL 290 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l 290 (423)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4443433344555666666565555432 221 344455555555666666666666555431 01112233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 014502 291 VKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~ 312 (423)
..++...|+.++|..+++.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666666555
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.23 Score=43.01 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCccCHHhHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---RKLDRVKSFLKFLLGGGWKINENMAQK 289 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g~~~~~~~~~~ 289 (423)
|...|-.|...|...|+++.|..-|....+.. .++...+..+..++... ....++.++++++++.. +-|..+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 56666666667777777777766666665432 23333444444433222 23445666666666643 234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 290 LVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 556666666666666666666664
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.11 Score=44.85 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=40.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCChHh
Q 014502 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS---DRLDDVEYSVGRMGKQGLSFKSAED 359 (423)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~ 359 (423)
|...|-.|...|...|+++.|...|.+..+ +.|+.... +..+..++... ....++.++|+++.. .+|.++.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~-~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEI-LLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 455555555555555555555555555544 22222111 22232222211 123455555555554 33444555
Q ss_pred HHHHHHHHhhcccc
Q 014502 360 VEMVICSYFRCAAY 373 (423)
Q Consensus 360 ~~~l~~~~~~~~~~ 373 (423)
...|...+...|++
T Consensus 230 l~lLA~~afe~g~~ 243 (287)
T COG4235 230 LSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHHHHHHcccH
Confidence 55555555555555
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.068 Score=46.38 Aligned_cols=99 Identities=7% Similarity=-0.035 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS 325 (423)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 325 (423)
..|...+..+.+.|++++|...|+.+.+.- |+ ...+..+..+|...|++++|...|+.+.+...........+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 446666655567789999999999988753 33 246667888899999999999999998864322111222244
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
.+...+...|+.++|..+|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777889999999999988874
No 211
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.53 E-value=0.21 Score=38.72 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 226 (423)
.++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444455555555555544432 344444555555544
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.45 E-value=0.35 Score=38.74 Aligned_cols=146 Identities=15% Similarity=0.103 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 298 (423)
.+..+..+.=+++...+-..+ +-...|+...-..+..+....|+..+|...|++....-+..|..+.-.+..+....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~--~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATE--ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHH--HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 444555555566655443222 234578888888899999999999999999999998767788889989999999999
Q ss_pred CHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc
Q 014502 299 RVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 299 ~~~~a~~~~~~~~~~~---~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 373 (423)
+...|...++++.+.+ -.|+. .-.+...|...|+..+|+.-|+...+.- | ++.........+.++|+.
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~----~Ll~aR~laa~g~~a~Aesafe~a~~~y--p-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDG----HLLFARTLAAQGKYADAESAFEVAISYY--P-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCc----hHHHHHHHHhcCCchhHHHHHHHHHHhC--C-CHHHHHHHHHHHHHhcch
Confidence 9999999999988754 23443 4467788999999999999999998742 2 255555555566666644
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.44 E-value=0.031 Score=47.49 Aligned_cols=105 Identities=11% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502 140 KPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214 (423)
Q Consensus 140 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (423)
+.|..+|-..+..+... +.++-....++.|.+ .|+..|..+|+.||+.+-+..-. |.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfi----------------P~- 125 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFI----------------PQ- 125 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccc----------------cH-
Confidence 34677777777776643 556666677777777 78888888888877766443221 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
..+....-.|-+ +-+-+++++++|...|+.||-.+-..++++|++.+-
T Consensus 126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111111 223355666666666666666666666666665554
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.35 E-value=0.068 Score=47.98 Aligned_cols=274 Identities=13% Similarity=0.048 Sum_probs=156.2
Q ss_pred ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCH----hHHHHHHHHHhcCCChhHHHHHHHHHH--HC--C
Q 014502 70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSME--AQ--G 138 (423)
Q Consensus 70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~--~~--g 138 (423)
+...+...+.+ |+.|+....+.. |+...+.|..|. .+|..|.++|.-.+++++|.++...=. .+ |
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~f----f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDF----FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHH----HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 34456666666 788888888888 566666666553 447777778888889999988753211 10 0
Q ss_pred CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH----Hhc-CCCCCCHHhHHHHHHHHHhcCC------------------
Q 014502 139 IK-PDSAVFNSLICACLCSGDVVTALSLFEIM----VSS-EEYKPNSKTYDAFISGFSSLGN------------------ 194 (423)
Q Consensus 139 ~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-~~~~p~~~~~~~li~~~~~~~~------------------ 194 (423)
-+ -...+...+.+.+--.|.+++|+-...+- ++. ..+. ....+-.|.+.|...|+
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 00 01122223334444456666665432211 110 0111 12233345555554443
Q ss_pred --HHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhc
Q 014502 195 --VDAMNKWYAANIA----AGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMM----SLGIIP-SIPILEKVLEGLCAR 262 (423)
Q Consensus 195 --~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~ 262 (423)
++.|.++|.+=.+ .|- ..--..|..|-+.|.-.|+++.|+..-+.-. +-|-.. ....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 2344555543221 110 0123456677777777899999987654432 223221 234677888888889
Q ss_pred CCHHHHHHHHHHHHhC----CC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CchHHHHHHHHHHHHH
Q 014502 263 RKLDRVKSFLKFLLGG----GW-KINENMAQKLVKCYCELGRVDELEEQLETLTK----CNQS-PEVLLHFFSGIIRLYA 332 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-p~~~~~~~~~li~~~~ 332 (423)
|+++.|.+.|+.-... |- ........+|...|.-..+++.|+.++..-.. .+-. -.... +=+|-.+|.
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra--cwSLgna~~ 326 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA--CWSLGNAFN 326 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 9999999888875432 21 12344556688888888888888888776432 1111 11222 456788888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 014502 333 LSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 333 ~~g~~~~a~~~~~~m~~~ 350 (423)
..|..++|+.+.+.-.+.
T Consensus 327 alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 888888888877665543
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.34 E-value=0.37 Score=37.94 Aligned_cols=88 Identities=5% Similarity=-0.001 Sum_probs=61.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 302 (423)
-+...|++++|..+|+-+...+ .-+..-|..|...+-..+++++|...|......+. -|+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456788888888888876654 23344455566666677888888888887766543 344444456778888888888
Q ss_pred HHHHHHHHHh
Q 014502 303 LEEQLETLTK 312 (423)
Q Consensus 303 a~~~~~~~~~ 312 (423)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888888776
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.34 E-value=0.035 Score=37.41 Aligned_cols=52 Identities=2% Similarity=0.002 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
|.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444443322 33333334444444444444444444443
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.17 E-value=0.045 Score=36.82 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
.|.+.+++++|.++++.+.... +.+...+.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555555432 22333444444455555555555555555544
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.14 E-value=0.7 Score=39.19 Aligned_cols=184 Identities=15% Similarity=0.028 Sum_probs=98.1
Q ss_pred CcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC---CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 014502 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144 (423)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 144 (423)
.|-...|+..+..++.|++++|.+. |+.+....+- ...+--.++.++-+.++++.|+..+++....-......
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~----fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKY----FEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3456678888888888888888888 5566555542 45556667777778888888888888877653222223
Q ss_pred HHHHHHHHHHcc-------CCHHHHH---HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502 145 VFNSLICACLCS-------GDVVTAL---SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214 (423)
Q Consensus 145 ~~~~li~~~~~~-------g~~~~A~---~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (423)
.|-..|.+++.- .+...+. .-|++..++ -||+ .-...|..-...+... .
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~d~-----L 166 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLNDA-----L 166 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHHHH-----H
Confidence 444445544421 2222222 222222221 1222 1111111111111110 0
Q ss_pred HHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 215 QTY-ESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 215 ~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
.-+ -.+.+-|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+..
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 001 12345667777777777777777665 1111 23345556666666776666666555544
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.11 E-value=0.058 Score=45.95 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV-----QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (423)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (423)
++.+++-.++..|+.. +.+..|..+|-..+..+... +.++-.-..+..|.+.|+..|..+|+.|++.+-+.
T Consensus 45 ~pTK~Lv~~e~~F~aa-~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg--- 120 (406)
T KOG3941|consen 45 EPTKSLVHVEKQFEAA-EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG--- 120 (406)
T ss_pred Cccccccchhhhhhcc-CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc---
Confidence 3344444444335543 33346888999988888643 56777777888999999999999999888765432
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYE 238 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~ 238 (423)
.+.|.. .+....-.|-+ +-+=++.++++|...|+.||-.+-..|++++.+.+..- +..++.-
T Consensus 121 --------------kfiP~n-vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~y 183 (406)
T KOG3941|consen 121 --------------KFIPQN-VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLY 183 (406)
T ss_pred --------------ccccHH-HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHH
Confidence 222322 22222222222 22347889999999999999999999999999887653 3444444
Q ss_pred HHH
Q 014502 239 EMM 241 (423)
Q Consensus 239 ~m~ 241 (423)
.|.
T Consensus 184 WmP 186 (406)
T KOG3941|consen 184 WMP 186 (406)
T ss_pred hhh
Confidence 443
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.10 E-value=0.43 Score=45.48 Aligned_cols=165 Identities=14% Similarity=0.077 Sum_probs=104.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-----HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-----KTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQ 215 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 215 (423)
....++...+-.|+-+.+++.+.+-.+..++.-.. .+|+..+..++. ..+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34456666667788888888888877644443332 235555544443 34677888888888876 56766
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH-
Q 014502 216 TYESLI-HGSLKARDFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL- 290 (423)
Q Consensus 216 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l- 290 (423)
.|...- +.+...|++++|++.|++...... +.....+--+.-.+....++++|.+.+..+.+..- -...+|.-+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 665443 456677899999999987653111 11223344455567778899999999998887532 223333332
Q ss_pred HHHHHhcCCH-------HHHHHHHHHHHh
Q 014502 291 VKCYCELGRV-------DELEEQLETLTK 312 (423)
Q Consensus 291 i~~~~~~g~~-------~~a~~~~~~~~~ 312 (423)
..++...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2344556777 777777777643
No 221
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.08 E-value=0.41 Score=45.03 Aligned_cols=156 Identities=8% Similarity=0.042 Sum_probs=82.5
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
.-.++++++.++.+.-.-...++ ..-.+.++..+-+.|..+.|+++..+ .. .-.+...+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHH
Confidence 34566666665554111101122 33466677777777777777766332 21 122334566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
.++.++ ..+...|..|.+...+.|+++.|.+.+.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 664322 23566777777777777777777777665433 445555666677776666666666554
Q ss_pred CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
|. +|....++...|+.++..+++.+
T Consensus 403 ~~--------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD--------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 45555566666777777666655
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=0.7 Score=38.56 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
..+...|++++|.+.|+.+.....-.|- ....-.+..++.+.|++++|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556666666666666542111111 122333445555666666666666665554
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.38 Score=42.22 Aligned_cols=118 Identities=8% Similarity=0.039 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH----hHHHHHHHHHhcCCHH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN----MAQKLVKCYCELGRVD 301 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~ 301 (423)
-.|+.-+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..+|.. +-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666776777777654 3556667777777778888887777777777654 233432 2233344556678888
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
+|++.-++..+.+. .|.+. -.+....+-..|+..++.++..+-.
T Consensus 193 dAEk~A~ralqiN~-~D~Wa--~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWA--SHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCC-cchHH--HHHHHHHHHhcchhhhHHHHHHhcc
Confidence 88887777766331 23343 4566666777788888877766543
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.01 E-value=0.45 Score=35.77 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a 340 (423)
-.|.+++..++..+...+. +..-+|.+|--....-+-+-..++++.+-+ ..|. ..+|++...
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi------------s~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI------------SKCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G------------GG-S-THHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc------------hhhcchHHH
Confidence 3566677777777666542 333344444333333333334444444432 1111 113333333
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
...+-. .|. ....+...+.....+|..+.++.+..-+.+.-.+++...-.+..+|.+.|+..++.+++++.-++
T Consensus 76 i~C~~~---~n~---~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAK---RNK---LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHH---TT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHH---hcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333322 112 14445555666666666666554444443344677777777888888888888888888888777
Q ss_pred CC
Q 014502 421 EY 422 (423)
Q Consensus 421 g~ 422 (423)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 75
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.046 Score=37.40 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
+++.+...|...|++++|...|++..+. |........++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444321 1100011122444555555555555555555443
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.98 E-value=0.46 Score=35.68 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (423)
+...++.+...|+-++..+++.++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-++|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334444455555555555555554322 34444444555555555555555555555554443
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.95 E-value=1.2 Score=40.17 Aligned_cols=279 Identities=15% Similarity=0.115 Sum_probs=150.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHHhcCCHH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA--CLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFSSLGNVD 196 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~ 196 (423)
.|+-..|.++-.+-.+. +.-|....-.++.+ -.-.|+++.|.+-|+.|.. .|.... ..-|.-.--+.|+.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHH
Confidence 45666666555443321 12233333333332 2345777788888877775 244332 222333334567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH--HHHHHHHHH---hcCCHHHHHH
Q 014502 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPI--LEKVLEGLC---ARRKLDRVKS 270 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~--~~~li~~~~---~~g~~~~a~~ 270 (423)
.|.++-++.-..-.. -...+...+...|..|+++.|+++.+.-++. -+.++..- -..++.+-. -.-+...|..
T Consensus 172 aAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 777776666554322 3455667777777888888888877765442 33444322 222332211 1234455555
Q ss_pred HHHHHHhCCCccCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 271 FLKFLLGGGWKINENM-AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 271 ~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.-.+..+ +.||..- -..-..++.+.|+..++-.+++.+=+....|+... +..+.+.|+ .+.+-+++...
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~------lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL------LYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH------HHHHhcCCC--cHHHHHHHHHH
Confidence 5444444 4555432 22234677888888888888888877654444322 222344444 34444443332
Q ss_pred -CCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 014502 350 -QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA-GLSGKLDSVINE 416 (423)
Q Consensus 350 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 416 (423)
..+.|++..+--.+..+-...|++..+..--+... ...|....|..|.+.-.-. |+-.++...+-+
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~-r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA-REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh-hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 23566667777777777777777753322222221 1356667777777665444 777776665544
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.94 E-value=1.1 Score=39.72 Aligned_cols=130 Identities=12% Similarity=0.216 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCC-
Q 014502 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLC--SG----DVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGN- 194 (423)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~- 194 (423)
+++...+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++...+ .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666666666555554442222222 11 234566666666663222 1233344444433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-C--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 195 ---VDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKAR-D--FDSVDRFYEEMMSLGIIPSIPILEKV 255 (423)
Q Consensus 195 ---~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g-~--~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (423)
.+.++++|+.+.+.|+..+-. -+.+-+-++.... + ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244556666666655544322 1122222222111 1 33455566666666666655555443
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.89 E-value=0.19 Score=45.30 Aligned_cols=284 Identities=12% Similarity=-0.006 Sum_probs=128.0
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH--h-cCCCC-CCHHhHHHHHHH
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMV--S-SEEYK-PNSKTYDAFISG 188 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~~~~~-p~~~~~~~li~~ 188 (423)
-+++.|+......+|+...+.|.. | ..+|..+.++|.-.+++++|+++-..=. . ..|-+ -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467888888888888888887743 3 3356666777777777888776543110 0 00000 111223334444
Q ss_pred HHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 189 FSSLGNVDAMNKWYAANI----AAGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (423)
+--.|.+++|.-+-.+-. +.|- ......+..+.+.|...|+.-.... -.+.|-.++..+ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence 445566666654433221 1111 0122333445555554442110000 000011111110 0
Q ss_pred CHHHHHHHHHHH----HhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCchHHHHHHHHHHHHHhc
Q 014502 264 KLDRVKSFLKFL----LGGGWK-INENMAQKLVKCYCELGRVDELEEQLETL----TKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 264 ~~~~a~~~~~~~----~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
.++.|.++|.+= .+.|-. .-...|..|...|.-.|+++.|+...+.= .+.|-.....- .+..+-.++.-.
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRR-A~sNlgN~hifl 248 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERR-AHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcccchhhhhh
Confidence 011222222211 111100 11223444555555556666665544331 22222111111 155566666666
Q ss_pred CChhHHHHHHHHHHh----CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC-----CCcccHHHHHHHHHHHHhc
Q 014502 335 DRLDDVEYSVGRMGK----QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG-----SYKLRRATYDFLVAGYRRA 404 (423)
Q Consensus 335 g~~~~a~~~~~~m~~----~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~ 404 (423)
|+++.|.+.|+.... -|-......+--+|...|.-..+++ ++....+.+.- ...-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 666666666654332 1211111333344445554444443 23333222210 0111356788888888888
Q ss_pred CChhHHHHHHHHH
Q 014502 405 GLSGKLDSVINEM 417 (423)
Q Consensus 405 g~~~~a~~~~~~m 417 (423)
|..++|+.+.+.-
T Consensus 329 g~h~kAl~fae~h 341 (639)
T KOG1130|consen 329 GEHRKALYFAELH 341 (639)
T ss_pred hhHHHHHHHHHHH
Confidence 8888888877654
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.86 E-value=2.5 Score=43.69 Aligned_cols=91 Identities=10% Similarity=0.042 Sum_probs=58.2
Q ss_pred ccCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 014502 281 KINENM----AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356 (423)
Q Consensus 281 ~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 356 (423)
.|+... |.+..+-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.+|+.+..++....-. -
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de--~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKALKAYKECGDWREALSLAAQLSEGKDE--L 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH--H
Confidence 355544 44444555567788888877776543 345678888899999999988887642110 0
Q ss_pred hHhHHHHHHHHhhcccc-chHHHHHHHHh
Q 014502 357 AEDVEMVICSYFRCAAY-DRLDLFLDHIK 384 (423)
Q Consensus 357 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 384 (423)
...-..|+.-+...++. ||+++..+...
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 11115566777777776 77777776654
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.32 Score=44.92 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=33.3
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555555543 2332 2355555555555555555555555554
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.04 Score=37.74 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAA 204 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~ 204 (423)
+..+..++...|++++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
No 233
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.73 E-value=2 Score=41.45 Aligned_cols=121 Identities=11% Similarity=0.014 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYE------EMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~------~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
...+...|+.++|..+.- .+.+-+- ..+..+...+..-+.+...+..|-++|..|-+. ..++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 344555677777765531 1111111 122334444444455566677777777766442 2456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHH---------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 292 KCYCELGRVDELEEQLETLTKCNQSPEVLLH---------FFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~---------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
......+++++|.++-+...+ ..|+.... -|...-.+|.+.|+-.+|.++++++....+
T Consensus 781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 667778888888888877665 23333211 034455778888999999999988876544
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.21 Score=46.04 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
.+...|+.+..+|...|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566888888888888888888888888776 24664 34777888888888888888888888764
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.67 E-value=0.73 Score=35.68 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
..++..+.+.+.+.....+++.+...+. .+...+|.++..|++.+ ..+..+.+.. . .+......+++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 3444555555555556666655555542 35555566666665442 2222233221 1 222333345555556
Q ss_pred cCCHHHHHHHHHHH
Q 014502 192 LGNVDAMNKWYAAN 205 (423)
Q Consensus 192 ~~~~~~a~~~~~~m 205 (423)
.+.++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666665554
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.33 Score=43.81 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSL-----GI---------IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA 287 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~-----~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 287 (423)
+.|.+.|++..|..-|++..+. +. ..-..++..+.-++.+.+++..|++.-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4466677777777766664321 11 1112334444455555566666655555555543 2333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
-.=..+|...|+++.|+..|+++.+ ..|+..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nk 325 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNK 325 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcH
Confidence 3445555555666666666666555 334443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=2.3 Score=39.74 Aligned_cols=166 Identities=9% Similarity=0.054 Sum_probs=86.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 229 (423)
|.-.-+..+...-++.-.+..+ +.||..+.-.+ -+--....+.+++++|++..+.|-. ..--.... ...|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe---i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~---~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE---INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEA--SLGKSQFL---QHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH---hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHH--hhchhhhh---hcccc
Confidence 3333444555555555555544 23554332222 2333455678888888877654310 00000000 01111
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLE 308 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (423)
.++........|-..+=..+..++-+.|+.++|.+.+++|.+.--. ....+...|+.++...+.+.++..++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1122222222333333344556666778888888888888764211 234466778888888888888888888
Q ss_pred HHHhCCCCCchHHHHHHHHHHHH
Q 014502 309 TLTKCNQSPEVLLHFFSGIIRLY 331 (423)
Q Consensus 309 ~~~~~~~~p~~~~~~~~~li~~~ 331 (423)
+-.+.. -|...+..|+..+-.+
T Consensus 320 kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 320 KYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred Hhcccc-CCchHHHHHHHHHHHH
Confidence 764322 3444554577655433
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.36 E-value=3 Score=40.66 Aligned_cols=240 Identities=14% Similarity=0.102 Sum_probs=143.7
Q ss_pred CcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH----------HhcCCChhHHHHHHHHHHH
Q 014502 68 NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL----------SGKVQNVPFAMHVFTSMEA 136 (423)
Q Consensus 68 ~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~m~~ 136 (423)
.|.+..|..+... +..-.++-|...| .+- ..-+-......|-.. -+-.|++++|+++|-+|.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AF---Vrc---~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAF---VRC---GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhh---hhh---ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 5777889888777 6777788887775 221 111222222222221 2234889999999988876
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216 (423)
Q Consensus 137 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (423)
+ | ..|..+.+.|++-...++++.--....-.--...|+.+...+.....|++|.+.|..-.. .
T Consensus 763 r----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~-- 825 (1189)
T KOG2041|consen 763 R----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T-- 825 (1189)
T ss_pred h----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence 5 2 345667778888777766653211000011135788888888888899999988876432 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 296 (423)
...+.++.+..++++-..+-+.+ +.|....-.+.+++.+.|.-++|.+.+-+ .+. |. +.+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHHHHHH
Confidence 23566677766666666555444 33445566677788888888887766533 221 22 24556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHH------------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 297 LGRVDELEEQLETLTKCNQSPEVLLHF------------FSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+++.+|.++-+...- |...+.+ ..--|..+.+.|+.-+|-+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7777777666554221 1111100 12235667777877777777777764
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=1.7 Score=37.74 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=55.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
.....|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 344555566666666655554322 3334444555666666666666666555432211111111122233333333333
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333321 22444444555556666666666555555444
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.34 E-value=0.36 Score=37.05 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=59.0
Q ss_pred CcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 014502 68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144 (423)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 144 (423)
.|....|+.-...++.|++.+|.+. |+.+....+ -...+--.|+.+|.+.+++++|...+++..+........
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~----le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQ----LEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3445667777777899999999999 455554444 245667788899999999999999999998864332223
Q ss_pred HHHHHHHHHHc
Q 014502 145 VFNSLICACLC 155 (423)
Q Consensus 145 ~~~~li~~~~~ 155 (423)
-|...+.+++.
T Consensus 84 dYa~Y~~gL~~ 94 (142)
T PF13512_consen 84 DYAYYMRGLSY 94 (142)
T ss_pred cHHHHHHHHHH
Confidence 45555555544
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=1.7 Score=37.69 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=109.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 78 ITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 78 i~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
+.++....++..++-| +++.... +....+ .-.......+++.+|..+|......... +...--.+..+|...|
T Consensus 110 VdgF~G~qPesqlr~~---ld~~~~~--~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g 182 (304)
T COG3118 110 VDGFQGAQPESQLRQF---LDKVLPA--EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAG 182 (304)
T ss_pred ccccCCCCcHHHHHHH---HHHhcCh--HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcC
Confidence 3445666777776665 5554322 222222 2334556788888888888888776322 4566777888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRF 236 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 236 (423)
+++.|..++..+..+ --.........-|..+.+.....+...+-.+.-. .| |...-..+...+...|+.+.|.+.
T Consensus 183 ~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 183 DVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred ChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998887652 1111122222334455555555554455444443 34 666666777888888999988886
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 237 YEEMMSL-GIIPSIPILEKVLEGLCARRKLDRV 268 (423)
Q Consensus 237 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a 268 (423)
+-.+... --.-|...=..++..+.-.|.-+.+
T Consensus 259 Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 259 LLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 6555443 2234555666677777666644433
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.21 E-value=0.64 Score=43.76 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=25.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 244 (423)
+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 334455555555555555555555444321 3333334444444444444444444433
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=95.16 E-value=0.64 Score=36.67 Aligned_cols=86 Identities=12% Similarity=-0.069 Sum_probs=41.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..|++++|..+|+ -+.-.+.-|..-+..|..++-..+++++|...|...-..+. -|+..+-....++...|+.+
T Consensus 48 y~~Gk~~eA~~~F~----~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 48 YNQGRLDEAETFFR----FLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHCCCHHHHHHHHH----HHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 45555555555533 22222333444445555555555555555555554443332 13333444445555555555
Q ss_pred HHHHHHHHHHh
Q 014502 161 TALSLFEIMVS 171 (423)
Q Consensus 161 ~A~~~~~~m~~ 171 (423)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.65 Score=39.76 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFI 186 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 186 (423)
.|+.-+..+ +.|++..|.+.|....+.... -....+--|..++...|++++|..+|..+.+..+-.|- ...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 234455555555555543211 01223333445555555555555555555442221111 13333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555555555555555544
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.13 E-value=0.08 Score=31.51 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
|..+...|...|++++|+++|++..+ ..|+++..+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 56677777777777777777777776 3456666665543
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.05 E-value=2.8 Score=38.64 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
+|...+..-.+..-++.|..+|-+..+.+ ..++... +++++..++ .|+...|..+|+--... -|+++...+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi--~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYI--YCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceee--eHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34455555566666777888888887777 3444444 777777554 45667777777654432 234444446666
Q ss_pred HHHhhccccchHHHHHHHHhCCCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 365 CSYFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
.-+...++.+.++.+++.....+..+ ...|..+|+--..-|+...+..+=+.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 66666666655554444332222333 4567777777777788777766666554
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=2.5 Score=40.34 Aligned_cols=163 Identities=12% Similarity=0.138 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPD-----SAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNS 179 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~ 179 (423)
.+..++...+=.||-+.+++.+.+-.+.+ +.-. .-.|+.++..++. ....+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 35667777788899999999998866532 2111 1235555554444 45788999999999874 5887
Q ss_pred HhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 180 KTYDAFI-SGFSSLGNVDAMNKWYAANIAAGF---SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255 (423)
Q Consensus 180 ~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (423)
..|...- +.+...|++++|++.|++...... +.....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 7765443 667788999999999997653211 1122233334455777899999999999998754 3333444433
Q ss_pred HHH-HHhcCCH-------HHHHHHHHHHH
Q 014502 256 LEG-LCARRKL-------DRVKSFLKFLL 276 (423)
Q Consensus 256 i~~-~~~~g~~-------~~a~~~~~~~~ 276 (423)
..+ +...|+. ++|.+++.+..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 333 3456777 77888877764
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.97 E-value=0.67 Score=37.62 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+..+.+.|.+.|+.+.|.+.+.++.+....+.....++-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5566777777777777777777777776666666665566777777777777777766666554
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.96 E-value=1.9 Score=38.47 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=144.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHc
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS----MEAQG-IKPDSAVFNSLICACLC 155 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g-~~p~~~~~~~li~~~~~ 155 (423)
+.+.+.++|+..+...+++.... ..--.+|..+..+.++.|.+++++..--. ..+.. -..--..|-.+.+++-+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~-~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDL-MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHH-HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888865444443211 12345678888888888888876543211 11110 00112355566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 014502 156 SGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVNVQTYESLIHGSLKA 227 (423)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~ 227 (423)
.-++.+++.+-..-....|..|. -...-++-.++...+.++++++.|+...+. +......+|-.|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 67777777776655544444442 123445667888888899999999876653 1222456788999999999
Q ss_pred CCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHh----CCCccC-HHhHHHHHHH
Q 014502 228 RDFDSVDRFYEEMMS----LGIIPSIPILEK-----VLEGLCARRKLDRVKSFLKFLLG----GGWKIN-ENMAQKLVKC 293 (423)
Q Consensus 228 g~~~~a~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~----~g~~~~-~~~~~~li~~ 293 (423)
.|+++|.-+..+..+ -++.--..-|.. +.-++...|....|.+.-++..+ .|-.+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999877655532 233222223333 33456677888888777777644 343222 2344567888
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 014502 294 YCELGRVDELEEQLETLT 311 (423)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~ 311 (423)
|...|+.|.|+.-++...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999998888754
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.86 E-value=0.5 Score=40.44 Aligned_cols=60 Identities=8% Similarity=-0.029 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|..++...|++++|..+|..+.+.-.........+--|.....+.|+.++|..+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444555555554444444432211111111133344444444555555555555443
No 251
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=3.2 Score=37.87 Aligned_cols=252 Identities=10% Similarity=0.014 Sum_probs=138.4
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCH
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNV 195 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~ 195 (423)
.+.+..++..|+..+....+.+.. +..-|..-...+...|++++|+--.++-.+ ++|. .....-.-+++...++.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhHHH
Confidence 344455566666666666655322 344444455555556666666555544433 1121 11222333333334444
Q ss_pred HHHHHHHH---------------HHHHCC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 196 DAMNKWYA---------------ANIAAG-FSVNVQTYESLI-HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (423)
Q Consensus 196 ~~a~~~~~---------------~m~~~~-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (423)
.+|.+.++ ...... -+|...+|-.+- .++.-.|++++|.+.--..++.+ + ...+..++++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcc
Confidence 44443333 111111 124445554443 35566789999888766665432 1 2344445554
Q ss_pred H--HhcCCHHHHHHHHHHHHhCCCccCHHhHHH-------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCchH---
Q 014502 259 L--CARRKLDRVKSFLKFLLGGGWKINENMAQK-------------LVKCYCELGRVDELEEQLETLTKCNQSPEVL--- 320 (423)
Q Consensus 259 ~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 320 (423)
. --.++.+.+...|++.+..+ |+...--. =..-..+.|++..|.+.+.+.+. +.|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~n 286 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTN 286 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchh
Confidence 3 34678899999999888754 55432211 12234678999999999999887 334322
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH-HHH--HHHHhhccccc-hHHHHHHHHh
Q 014502 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMV--ICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~l--~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
..+|........+.|+.++|+.--++..+ +. +... ..+ ..++...++++ +++-+...++
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~--iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALK--ID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhh--cC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12367777788899999999988888766 32 3222 222 34444455663 5555555544
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=1 Score=39.74 Aligned_cols=154 Identities=9% Similarity=-0.049 Sum_probs=102.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g 157 (423)
..+|++.+|... ++++++..+.|.-+++.-=++|.-.|+.+.-...++++.-. +++-.+..-....-++...|
T Consensus 114 ~~~g~~h~a~~~----wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIE----WDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHH----HHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 456777777777 67777777778888888888888888888888888887654 22222333344445566788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS---VNVQTYESLIHGSLKARDFDSVD 234 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 234 (423)
-+++|++.-++..+- .+-|...-.++...+-..|++.++.++..+-...--. .-.+-|=-..-.+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999888887762 2456677777888888888998888886553321000 00111111223355668899999
Q ss_pred HHHHHH
Q 014502 235 RFYEEM 240 (423)
Q Consensus 235 ~~~~~m 240 (423)
++|+.=
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 998743
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.62 E-value=1.8 Score=34.43 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 128 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
.++...+.+.|++|+...+..+|+.+.+.|++..-.. +.+ .++-+|+......+-.+. +....+.++=-+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq-~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQ-YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHh-hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4555666677888888888888888888888655444 334 556666665554443332 233445555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
. =...+..+++.+...|++-+|+++.+...... ...-..++.+..+.+|...-..+++-...
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 01135566777888888888888776643221 11224456666666666666666655544
No 254
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.41 E-value=3.4 Score=36.66 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH-
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLK--AR----DFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKL- 265 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~- 265 (423)
++...+++.|.+.|+..+..+|-+..-.... .. ...+|..+|+.|++.-. .++...+..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556677777777777666665543322222 22 23467777888876531 3455566666544 33333
Q ss_pred ---HHHHHHHHHHHhCCCccCHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchHH
Q 014502 266 ---DRVKSFLKFLLGGGWKINEN--MAQKLVKCYCELGR--VDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 266 ---~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.++++....
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 45666777777767655433 22333322222111 3466777777777777666554
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=0.98 Score=44.69 Aligned_cols=149 Identities=16% Similarity=0.252 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL----IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL 256 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 256 (423)
+...-|..+.+...++-|+.+-+.- +. +..+-..+ .+.+.+.|++++|..-|-+-... +.| ..+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 3455667777777777777764432 22 23232333 34455678888888777654321 122 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcC
Q 014502 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g 335 (423)
.-|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-. .|... + ....+..+.+.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd-----~e~al~Ilr~sn 477 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD-----VETALEILRKSN 477 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee-----HHHHHHHHHHhC
Confidence 5666677777777888888888765 44445567888888888887776666554 22221 2 334566677777
Q ss_pred ChhHHHHHHHHH
Q 014502 336 RLDDVEYSVGRM 347 (423)
Q Consensus 336 ~~~~a~~~~~~m 347 (423)
-.++|..+-.+.
T Consensus 478 yl~~a~~LA~k~ 489 (933)
T KOG2114|consen 478 YLDEAELLATKF 489 (933)
T ss_pred hHHHHHHHHHHh
Confidence 777777766554
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.23 E-value=0.8 Score=39.81 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 014502 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPILEK 254 (423)
Q Consensus 180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 254 (423)
.++..++..+...|+.+.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35667777777788888888888888777533 777788888888888888888888877754 466666655554
Q ss_pred HHHH
Q 014502 255 VLEG 258 (423)
Q Consensus 255 li~~ 258 (423)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=1.8 Score=42.95 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (423)
Q Consensus 155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 234 (423)
+.|++++|..-|-+-.. -+.|+. +|.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.
T Consensus 380 ~Kgdf~~A~~qYI~tI~--~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIG--FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHcc--cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 45556655555544432 122221 344444555555555555555555544 4444455556666666555555
Q ss_pred HHHHH
Q 014502 235 RFYEE 239 (423)
Q Consensus 235 ~~~~~ 239 (423)
++.+.
T Consensus 452 efI~~ 456 (933)
T KOG2114|consen 452 EFISK 456 (933)
T ss_pred HHHhc
Confidence 54443
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.5 Score=39.68 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=80.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAA-----GF---------SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 252 (423)
+.|.+.|++..|..-|++.... +. ..-..+++.+.-+|.+.+++..|++.-+.....+ +++....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455666666666665553321 11 1123467778888899999999999888888776 5667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh-HHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM-AQKLVKCYCELGRVDE-LEEQLETLTK 312 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~-a~~~~~~~~~ 312 (423)
-.=-.++...|+++.|...|+++++. .|+... -+.++.+--+.....+ ..++|..|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67778888899999999999999884 555444 4444444444333333 3556666643
No 259
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.95 E-value=0.78 Score=37.47 Aligned_cols=78 Identities=8% Similarity=-0.043 Sum_probs=46.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcc
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDSAVFNSLICACLCS 156 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~ 156 (423)
..+.+-..|.+.| -++...+. .|+.....|...|. ..+.+++.+++.+..+. +-.+|+..+.+|+..+-+.
T Consensus 117 Wsr~~d~~A~~~f----L~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRRF----LQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHHH----HHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4454456666663 34433333 45555555555555 55677777777666543 2255677777777777777
Q ss_pred CCHHHHH
Q 014502 157 GDVVTAL 163 (423)
Q Consensus 157 g~~~~A~ 163 (423)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 7777663
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=2.7 Score=33.46 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=60.4
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH-hHHHHHH--HHHhcCC
Q 014502 119 GKVQNVPFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TYDAFIS--GFSSLGN 194 (423)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~--~~~~~~~ 194 (423)
++.++.++|+.-|..+.+.|..--+. .--.+.......|+...|...|++.-.. .-.|-.. -...|=. .+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 34455566666666666554432111 1111223344556666666666666542 2122111 1111111 2344566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 247 (423)
++....-.+.+-..+-+.-...-..|--+-.+.|++.+|.+.|..+.+....|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 66666555555544433333334445555556666666666666655543333
No 261
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=3 Score=34.95 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=8.9
Q ss_pred HhcCCHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEM 240 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m 240 (423)
.-.+.+++|.++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3345666666666543
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.70 E-value=5.8 Score=36.74 Aligned_cols=137 Identities=7% Similarity=0.002 Sum_probs=67.5
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH--HH
Q 014502 119 GKVQNVPFAMHVFTSMEAQGIKPD------SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG--FS 190 (423)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~ 190 (423)
-+.+++.+|..+|.++.+..- .+ ...-+.++++|.. ++.+.....+...++.. | ...|-.|..+ +.
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence 355666666666666554311 11 1122344555543 34555555555555422 2 2223333322 23
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 014502 191 SLGNVDAMNKWYAANIAA--GFSV------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPSIPIL 252 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~ 252 (423)
+.+++++|.+.+..-.+. +-.| |-..=+..++++.+.|.+.++..++++|... ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 456666666655544433 2111 2222245566677777777777777776543 233666677
Q ss_pred HHHHHHHHh
Q 014502 253 EKVLEGLCA 261 (423)
Q Consensus 253 ~~li~~~~~ 261 (423)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 765555443
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.68 E-value=0.0017 Score=50.81 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=18.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (423)
.+.+.++....+++.+...+...+....+.++..|++.++.+...+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333444444444444443332333344444444444444334433333
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.64 E-value=3.6 Score=34.19 Aligned_cols=202 Identities=16% Similarity=0.093 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (423)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 222 (423)
...+......+...+.+..+...+...............+......+...++...+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444555555555555555555555544200112333344444455555555555555555555433222 111111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 223 -GSLKARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 223 -~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666533111 012223333333345566666666666666654211134555556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 300 VDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 300 ~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
++.|...+....... |+ ... +..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEA--LYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHH--HhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777666666532 32 111 22333333355566666666666655
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=93.54 E-value=6.4 Score=36.75 Aligned_cols=166 Identities=7% Similarity=0.079 Sum_probs=104.5
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 014502 215 QTY--ESLIHGSLKA-----RDFDSVDRFYEEMMS-LGIIPSI-PILEKVLEGLCA---------RRKLDRVKSFLKFLL 276 (423)
Q Consensus 215 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~-~~~~p~~-~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 276 (423)
..| ...+.+.... -..+.|+.+|.+... +.+.|+- ..|..+..++.. ..+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5566655542 234567888888873 2345653 334444333221 234556777777777
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 014502 277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS 356 (423)
Q Consensus 277 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 356 (423)
+.+ +.|......+..++...++++.|...|+.... ..|+.... |....-...-+|+.++|.+.+++..+.......
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~-~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASL-YYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 765 45777777777777888889999999999888 44765543 444555567789999999999986653211111
Q ss_pred hHhHHHHHHHHhhccccchHHHHHHHHh
Q 014502 357 AEDVEMVICSYFRCAAYDRLDLFLDHIK 384 (423)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 384 (423)
.......+..|+..+-.++..++.+..+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 2222334557888887788877766543
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.35 E-value=8.7 Score=37.69 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAMNKWYAANIA-------AGFSVNVQTYESLIHGSLKAR-- 228 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-- 228 (423)
...|.++++...+...+.+-...=.....+ +....+.+.|+.+|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777776621111111111112223 4456778888888887766 44 2334455556665532
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH--hcCCHHH
Q 014502 229 ---DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC--ELGRVDE 302 (423)
Q Consensus 229 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~ 302 (423)
+.+.|..+|.+.-+.| .|+....-..+.-... ..+...|.++|...-+.|.. +...+.+++.... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 5677888888877777 4665555444443333 35677888888888887743 2222222221111 2345777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 303 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
|..++.+..+.|....... ...+..+.. ++++.+.-.+..+.+.|.
T Consensus 383 A~~~~k~aA~~g~~~A~~~---~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYL---LGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHccChhhHHH---HHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 8888888877773222222 122333333 666666666555555444
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.34 E-value=5.8 Score=35.62 Aligned_cols=227 Identities=11% Similarity=0.064 Sum_probs=122.4
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHC-CCC---CCHHHHHHHHHHHHhcC
Q 014502 155 CSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAA-NIAA-GFS---VNVQTYESLIHGSLKAR 228 (423)
Q Consensus 155 ~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~-~~~---~~~~~~~~li~~~~~~g 228 (423)
...+.++|+..+.+-..+. ...---.+|..+..+.++.|.+++++..--. |.-. ... .-...|-.+-.++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555444310 0111223566666677777776665543211 1100 001 11234555556666666
Q ss_pred CHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----cCHHhHHHHHHHHHhcCC
Q 014502 229 DFDSVDRFYEEMMS-LGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-----INENMAQKLVKCYCELGR 299 (423)
Q Consensus 229 ~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~g~ 299 (423)
++.+++.+-..-.. .|..| ......++-.++...+.++++++.|+...+.... ....++..|-..|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 66666665544332 13223 1233444666777778888888888877653211 234578888889999999
Q ss_pred HHHHHHHHHHHHh--CCCCCchHHHHHH-----HHHHHHHhcCChhHHHHHHHHHH----hCCCCCCChHhHHHHHHHHh
Q 014502 300 VDELEEQLETLTK--CNQSPEVLLHFFS-----GIIRLYALSDRLDDVEYSVGRMG----KQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 300 ~~~a~~~~~~~~~--~~~~p~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~~l~~~~~ 368 (423)
+++|.-+..+..+ +....+.+..-|. .|.-++...|++.+|.+.-++.. +.|-.+........+...|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9988766665443 1111122111132 34456677787777777666544 34443333445566778888
Q ss_pred hccccch-HHHHHH
Q 014502 369 RCAAYDR-LDLFLD 381 (423)
Q Consensus 369 ~~~~~~~-~~~~~~ 381 (423)
..|+.|+ ..-|.+
T Consensus 258 ~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQ 271 (518)
T ss_pred hcccHhHHHHHHHH
Confidence 8888864 444443
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.25 E-value=1.3 Score=38.63 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-----AGFSVNVQTYE 218 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~ 218 (423)
.++..++..+...|+++.+.+.++++... -+-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35556666666667777777777666652 244566677777777777777777766666554 46677666666
Q ss_pred HHHHH
Q 014502 219 SLIHG 223 (423)
Q Consensus 219 ~li~~ 223 (423)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.15 E-value=1.9 Score=40.30 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=74.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151 (423)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 151 (423)
.....+-.+.+..++..-++.-+ +.++..+.-...|..|. --....+.+|+++|++..+.|- ..+.
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~----eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg---- 235 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAK----EALEINPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLG---- 235 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH----HHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhc----
Confidence 44566666788888877777742 32222222223333322 2235567889998888776431 1110
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDF 230 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~ 230 (423)
+....+..-..++.... ....|-..+=..+-.++-+.|+.++|++.+.+|.+.... -+......|+.++...+.+
T Consensus 236 ---~s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 236 ---KSQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ---hhhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 00000000011111111 111222222233555555667777777777666654221 1233555666667777777
Q ss_pred HHHHHHHHHHH
Q 014502 231 DSVDRFYEEMM 241 (423)
Q Consensus 231 ~~a~~~~~~m~ 241 (423)
.++..++.+-.
T Consensus 312 ad~q~lL~kYd 322 (539)
T PF04184_consen 312 ADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhc
Confidence 77766666653
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.14 E-value=3.2 Score=32.02 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCc---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 261 ARRKLDRVKSFLKFLLGGGWK---INENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+.|++++|.+.|+.+... .+ -...+.-.++.+|.+.+++++|...++..++
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555443 11 1122333445555555555555555555544
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.12 E-value=2.9 Score=31.54 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=52.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHhcCC
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDR 336 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~g~ 336 (423)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+=+++..+. |.........|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566777777777666654 2335566666666666677777776666665552 21111111123333334556667
Q ss_pred hhHHHHHHHHHHhCC
Q 014502 337 LDDVEYSVGRMGKQG 351 (423)
Q Consensus 337 ~~~a~~~~~~m~~~~ 351 (423)
.+.|..-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777676666554
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.02 E-value=0.38 Score=28.50 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHC
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQ 137 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 137 (423)
+..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555443
No 273
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.01 E-value=5 Score=34.95 Aligned_cols=148 Identities=10% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS-LG-NVDAMNKWYAANIAA-GFSVNVQTYESLIH 222 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~ 222 (423)
|..++. ++..+.+|+++|+....+..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 3455678888888443212356677777777777665 22 223333444444433 44667777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCccCHHhHHHHHHHHHh
Q 014502 223 GSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKF-----LLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~~~ 296 (423)
.+++.+++.+-.++++..... +..-|...|..+|+.....|+..-..++.++ +.+.++..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 899999999888888877654 5566778888888888889988877777765 3455677777666665555443
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.94 E-value=2.4 Score=34.43 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
..+..+.+.|++.|+.+.|++.|.++.+....+.. ..+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556666777777777777777776665433332 3455666666666777776666665543
No 275
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.84 Score=39.80 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=75.6
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN 213 (423)
Q Consensus 136 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (423)
..|.+.+..+...++..-....+++.++..+-+++.+.+ ..|+. +-.+.++.+.+ -+.++++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 345566667777777777777888999888888876311 11222 22334444433 456688888888888899999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 244 (423)
..+++.+|+.+.+.+++.+|.++.-.|..+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877776543
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.70 E-value=4.3 Score=32.39 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=68.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 200 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 279 (423)
+++..+.+.++.|+...|..+++.+.+.|++....+ +...++-+|.......+-.+.. ....+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 455555566677777777777777777776554433 3445556665555544433322 223333333333332
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.. ..+..+++.+...|++-+|.++.+.....+..| ...++++-.+.++...-..+|+-..+
T Consensus 88 L~---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~------~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LG---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP------ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 124445566666777777777666543322112 23345555555555444444444433
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.37 E-value=7.4 Score=34.31 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
-+..+.+.++.+++.+++.+|...
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHHHh
Confidence 344444455555555555555544
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.20 E-value=0.39 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEE 239 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~ 239 (423)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 279
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.18 E-value=7.4 Score=33.93 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLK-ARD-FDSVDRFYEEMMS-LGIIPSIPILEKVLE 257 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~~-~~~~p~~~~~~~li~ 257 (423)
|..|+. ....+.+|+++|+..-- ..+--|..+...+++.... .+. ...-.++.+-+.. .|-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 554443 23345667777773222 2344577777788877776 222 2222334444433 245788899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCchHH
Q 014502 258 GLCARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLET-----LTKCNQSPEVLL 321 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~~~ 321 (423)
.++..+++....++++..... +..-|...|..+|+...+.|+..-...+.++ +++.++..+...
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L 280 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDEL 280 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHH
Confidence 999999999999999988776 5667888999999999999999888777765 445555555443
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.13 E-value=7.9 Score=34.12 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 216 TYESLIHGSLKARDFD---SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
+...++.+|...+..+ +|.++++.+.+.. .-....+..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444455555554433 3334444443321 111233334444444456666666666666554
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=2.6 Score=36.91 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=75.7
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG---IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 183 (423)
...+...++..-....+++.+...+-.++... ..|+.. -.++++.+. .-+.++++.++..=.+ .|+.||-.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHH
Confidence 45556677777777889999999988887641 122211 122333333 4567799999998888 99999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~ 209 (423)
.+|+.+.+.+++.+|.++.-.|....
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.11 E-value=0.38 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 393 TYDFLVAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 418 (423)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999843
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.02 E-value=4.2 Score=30.71 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=59.0
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH---hHHHHHHHHHhcC
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK---TYDAFISGFSSLG 193 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~ 193 (423)
+++..|+++.|++.|.+....- +-....||.-..++--.|+.++|++=+++..+..|-+ +.. .|..-...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 5567788888888887776642 3366778888888888888888887777776633322 222 2322334455667
Q ss_pred CHHHHHHHHHHHHHCC
Q 014502 194 NVDAMNKWYAANIAAG 209 (423)
Q Consensus 194 ~~~~a~~~~~~m~~~~ 209 (423)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666555
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.97 E-value=5.1 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.116 Sum_probs=24.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
+.++.+++..++..+.- ..|..... -..-.-.+...|+|.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~-~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPEL-DLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHH-HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34555666666665554 22332221 111122245566666666666665543
No 285
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.49 E-value=7.3 Score=32.39 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 322 HFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+|--+.+.|...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3466677777777777777777777665
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.48 E-value=8.4 Score=33.11 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=125.7
Q ss_pred hhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---
Q 014502 63 DIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ--- 137 (423)
Q Consensus 63 ~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 137 (423)
...+-.||+-.=|..-.+ ++...+++|+..|..+++.=-+.+.---.+...++..+.+.+++++....+.+|..-
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 344667887776666666 677889999999765444322222234566788899999999999999888887632
Q ss_pred CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 014502 138 GI--KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGF- 210 (423)
Q Consensus 138 g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 210 (423)
.+ .-+....|++++....+.+.+.-..+|+.-.+.-.-..+. .|-+-|...|...+.+....++++++...--
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 1244567788877666666655555544322100000111 1334566777788888888888887764311
Q ss_pred ---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 014502 211 ---SV-------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGL-----CARRKLDRVKS 270 (423)
Q Consensus 211 ---~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~~~a~~ 270 (423)
.- =...|..=|..|....+-.+...+|++.... .-.|.+.... +|.-| .+.|++++|..
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 11 1345777777888877777777788766432 2235444443 33333 35677777644
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.41 E-value=2 Score=30.35 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (423)
.++.+-++.+...++.|++....+.+++|.+.+++..|.++++-..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555555555555555666655666666665555544
No 288
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.02 E-value=18 Score=36.16 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch
Q 014502 297 LGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR 375 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~-~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 375 (423)
..+.+.|...+..... ....+.....++..+.......+...++...++....... +......-+..-...++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~---~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ---STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC---CcHHHHHHHHHHHHccCHHH
Confidence 3445667777776533 2233333333344444333333324455555554332211 23334444444446666654
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
+..+...+.....-...-..-+..++...|+.++|..+|++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333222211222333445666666677777777777765
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.98 E-value=0.31 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=21.1
Q ss_pred HHHhhCCCCCHhHHHHHHHHHhcCCChhHHH
Q 014502 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAM 128 (423)
Q Consensus 98 ~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (423)
++..+..+.|..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344445567777777777777777777765
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.59 E-value=1.6 Score=30.78 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+ +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45555666666666677777777777777777777777777766531 222334555444
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.41 E-value=7.5 Score=30.67 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=22.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAV-FNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+.++.+.+..+++-+... .|.... -..-...+...|++.+|.++|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555443 222211 11112233455555555555555544
No 292
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=18 Score=37.22 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=14.0
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 014502 330 LYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 330 ~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+.+.|+.++|+.++-....
T Consensus 693 ll~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 693 LLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHhhhhhHHHHHHHHHHHhc
Confidence 34478888888888766553
No 293
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.80 E-value=2 Score=30.69 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (423)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (423)
+-++.+...++.|++....+.+.+|.+.+++..|.++++-+.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444443
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.14 E-value=26 Score=35.00 Aligned_cols=66 Identities=6% Similarity=0.021 Sum_probs=41.9
Q ss_pred cChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-------hhHHHHHHHHHHHCC
Q 014502 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-------VPFAMHVFTSMEAQG 138 (423)
Q Consensus 69 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~g 138 (423)
.+.-.|-.+--.++.|..++|.++ ..............+...+..|....+ -++...-|++.....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~----~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEV----ANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHH----HHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CCCccHHHHHHHHhcCCHHHHHHH----HHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345567777667899999999999 544444555666778888888876533 234555566555443
No 295
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.94 E-value=18 Score=32.95 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=28.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA 136 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 136 (423)
.+.|+++...+. .... ....++...|..+... +.++++++....+....
T Consensus 9 Wrl~~Wd~l~~~----~~~~-~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 9 WRLGDWDLLEEY----LSQS-NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HhcCChhhHHHH----Hhhc-cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 577777774444 2222 2222455555555554 77788887777777654
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.81 E-value=9.5 Score=29.63 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 297 LGRVDELEEQLETLTKCNQSPEVLLH-FFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~p~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
.++.+++..+++.|.- ..|+.... ++.. -.+...|+|++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 5556666666665554 22322210 0222 22455666666666666665544
No 297
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.58 E-value=13 Score=30.76 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=139.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 156 SGDVVTALSLFEIMVSSEEYK-PNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
.+....+...+..... .... .....+......+...+.+..+...+...... ........+......+...+++..+
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALE-LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHh-cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 4666677777776665 2111 13567777788888888888888888877652 2244566677777777888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--ccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 234 DRFYEEMMSLGIIPSIPILEKVLE-GLCARRKLDRVKSFLKFLLGGGW--KINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
.+.+.........+. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 888888776543331 22222222 67788888888888888855221 123334444445566778888888888888
Q ss_pred HhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 311 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
........... +..+...+...++.+++...+....... |.....+..+...+...+..+ +...+.....
T Consensus 194 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEA--LLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHH--HHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77432211233 6677777888888888888888877633 222344444444444444443 3444444433
No 298
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.04 E-value=16 Score=31.29 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=24.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 155 CSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 155 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
+.|++++|.+.|+.+..+....| ...+--.++-++.+.+++++|+...++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44555555555555544221111 1223333444455555555555555555443
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.00 E-value=0.76 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a 233 (423)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444455555555555555444
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.53 E-value=8.6 Score=27.61 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 329 (423)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+.-.. ... |..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~-~~~--Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK-KEI--YPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTH--HHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh-HHH--HHHHHH
Confidence 566777777888889999999999999999999999999999987653322 223 666654
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.11 E-value=20 Score=31.37 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
++.....|...|.+.+|.++.+..+... +.+...+-.|+..++..|+--.|..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445566667777777777777766653 445666666777777777755555555544
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.96 E-value=2 Score=23.42 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+|..+..++...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5788999999999999999999998765
No 303
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.94 E-value=13 Score=28.92 Aligned_cols=96 Identities=9% Similarity=0.008 Sum_probs=46.5
Q ss_pred HHhhhccCCcChh--hHHHHHHH-HhcCCHHHHHHHHHHHHHHHhh---CCCCCHhHHHHHHHHHhcCCC-hhHHHHHHH
Q 014502 60 DSVDIFAFNSSQF--SWDALITS-LQSSSPKKAQLVLEWRLDKMLK---GNESCLDEYACLIALSGKVQN-VPFAMHVFT 132 (423)
Q Consensus 60 ~~m~~~g~~p~~~--~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 132 (423)
+.|.+.+..++.. ..|.++.- ...+++...+.+++.+ ..... .+..|..+|+.++.+.++... --.+..+|+
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l-~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL-HFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 3334444444432 23555555 4445555555553221 00000 011345556666666655444 334555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc
Q 014502 133 SMEAQGIKPDSAVFNSLICACLCS 156 (423)
Q Consensus 133 ~m~~~g~~p~~~~~~~li~~~~~~ 156 (423)
.|++.+.++++.-|..+|.++.+.
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 666655566666666666655544
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.79 E-value=0.37 Score=37.54 Aligned_cols=84 Identities=7% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 193 (423)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. .. .-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhcc
Confidence 45666677777777777777776655556777778888888777666666666521 11 22334566666667
Q ss_pred CHHHHHHHHHHH
Q 014502 194 NVDAMNKWYAAN 205 (423)
Q Consensus 194 ~~~~a~~~~~~m 205 (423)
.++++.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666665554
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.54 E-value=1.9 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 391 RATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788899999999999999999988653
No 306
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.46 E-value=8 Score=27.45 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCC-----HhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-----LDEYACLIALSGKVQNVPFAMHVFTSMEA 136 (423)
Q Consensus 76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 136 (423)
..+.+++.+++..|.+.+.+.|+.....+.+. ....-.+.......|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455788888888888777777666555543 22233344555667777777777776653
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.24 E-value=16 Score=29.33 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP-ILEKV 255 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l 255 (423)
+...|..-++ +.+.+..++|+.-|.++.+.|..--.. .--.........|+...|...|++.-...-.|-.. -...+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555443 345566677777777777665431111 11112233456677777777777776554344332 22222
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 256 LEG--LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 256 i~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
=.+ +...|.++.+....+.+-..|-+.-...-.+|.-+-.+.|++.+|...|+.+......|...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 222 34567777777766666655544344444556666667777777777777776654445433
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.14 E-value=2.1 Score=23.34 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 014502 290 LVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~ 310 (423)
+..+|...|++++|...|++.
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHH
Confidence 333333334444444333333
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.09 E-value=13 Score=35.99 Aligned_cols=133 Identities=9% Similarity=-0.005 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
...-+.+.+.+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+.. +..-|..|..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHH
Confidence 344566666666666666665442 12211 1122345677777776665542 3445777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
+..+.+++..|.+.|..... |..|+-.+...|+-+....+-...++.| +-+... .+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF-----~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF-----LAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH-----HHHHHcCCHHH
Confidence 77777777777777766542 3455555666666665555555555555 333222 23445677777
Q ss_pred HHHHHHH
Q 014502 268 VKSFLKF 274 (423)
Q Consensus 268 a~~~~~~ 274 (423)
+.+++.+
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 6666544
No 310
>PRK09687 putative lyase; Provisional
Probab=85.95 E-value=24 Score=31.15 Aligned_cols=18 Identities=6% Similarity=-0.258 Sum_probs=8.4
Q ss_pred CCHhHHHHHHHHHhcCCC
Q 014502 106 SCLDEYACLIALSGKVQN 123 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~ 123 (423)
+|..+....+..+...|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~ 52 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG 52 (280)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 344444444445544443
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=30 Score=33.61 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
.-+.+...+.+.|..++|+++ .+|... -.....+.|+++.|.++..+. -+..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344555666666666666554 222221 112334667777777765443 34566778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a 340 (423)
..+++..|.+.+.+..+ |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--------cchHHHHHHHcCCHHHH
Confidence 88888888887776554 33455566667776655555555555543 33444457777888888
Q ss_pred HHHHHH
Q 014502 341 EYSVGR 346 (423)
Q Consensus 341 ~~~~~~ 346 (423)
.+++.+
T Consensus 741 ~~lLi~ 746 (794)
T KOG0276|consen 741 LELLIS 746 (794)
T ss_pred HHHHHh
Confidence 777655
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.74 E-value=3.1 Score=28.16 Aligned_cols=48 Identities=4% Similarity=-0.063 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~ 343 (423)
...+.++|...+....+....|.....+...++.+|+..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665554444443333455666666666666555544
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.67 E-value=11 Score=31.02 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=42.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---GIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.+.|+ ++|.+.|-++...+.--++.....|.. |.-..+.+++.+++....+. +-.+|+..+.+|.+.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 556666666665554434443333333 33356666666666655442 22456666666666666666666
Q ss_pred HHH
Q 014502 267 RVK 269 (423)
Q Consensus 267 ~a~ 269 (423)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 654
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.57 E-value=2.4 Score=24.27 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555666666665555543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.48 E-value=2.6 Score=22.80 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..|..+..++.+.|++++|.+.+++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677889999999999999999998764
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.00 E-value=36 Score=32.39 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 292 (423)
|....-+++..+..+..+.-...+..+|..-| .+-..|..++..|... ..++...+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555566666666666666666666666644 3445566666666655 455566666666665432 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014502 293 CYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~ 312 (423)
.|-+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 555555555555544
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.32 E-value=26 Score=30.24 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=134.8
Q ss_pred CCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 014502 137 QGIKPDSAVFNSLICAC-LCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSSLGNVDAMNKWYAANIAA---GF 210 (423)
Q Consensus 137 ~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~ 210 (423)
.+-.||+..=|..-.+- .+..++++|+.-|++..+..|-+.+ -.....+|....+.+++++..+.|.+|... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566766544433222 2445899999999999874443332 234567789999999999999999988742 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-
Q 014502 211 --SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----L-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI- 282 (423)
Q Consensus 211 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~- 282 (423)
.-+..+.|++++.-....+.+...++|+.-.+ . +-..-..|-+-+...|...+++....++++++..+.-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 23566778888877777777777776654322 1 112223455567778888899999999999987653222
Q ss_pred ---CH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHH-----HhcCChhHHH-HHHH
Q 014502 283 ---NE-------NMAQKLVKCYCELGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLY-----ALSDRLDDVE-YSVG 345 (423)
Q Consensus 283 ---~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~~~li~~~-----~~~g~~~~a~-~~~~ 345 (423)
|. .+|..-|.+|....+-.....++++... +...|.+.. ...|.-| .+.|++++|. ++|+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI---mGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI---MGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH---HhHHHHcCCccccccchHHHHHhHHHH
Confidence 22 3566677788888887888888887654 334455543 3445444 3567777775 3444
Q ss_pred HHH
Q 014502 346 RMG 348 (423)
Q Consensus 346 ~m~ 348 (423)
..+
T Consensus 257 AFK 259 (440)
T KOG1464|consen 257 AFK 259 (440)
T ss_pred HHh
Confidence 443
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.63 E-value=3.1 Score=22.46 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 014502 290 LVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~ 311 (423)
+...+...|++++|.+.+++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3333444444444444444433
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.02 E-value=19 Score=31.26 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m 240 (423)
|-.|.|.|++..+.++-...
T Consensus 125 ILLysKv~Ep~amlev~~~W 144 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAW 144 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 33344444444444444433
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.92 E-value=2 Score=21.94 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 014502 393 TYDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
....+..++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 455778899999999999988763
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.72 E-value=60 Score=33.19 Aligned_cols=201 Identities=9% Similarity=0.050 Sum_probs=109.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCH-------HhHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNS-------KTYDAFI-SGFSSLGNVDAMNKWYAANIAA----GFSVNVQTYE 218 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~ 218 (423)
.......++++|..+..+..... -.|+. ..++.|- ......|++++|..+-+..... -..+....+.
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 34456789999999998887622 22221 2344443 2334568888888887766543 2233556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCCH--HHHHHHHHHHHhC-----CC-ccCHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---LEKVLE--GLCARRKL--DRVKSFLKFLLGG-----GW-KINEN 285 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~--~~~~~g~~--~~a~~~~~~~~~~-----g~-~~~~~ 285 (423)
.+..+..-.|++++|..+..+..+..-.-+... |..+.. .+...|+. .+....+...... .. .+-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 777788888999999988876654322233333 333322 23445632 2222333322221 10 11223
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 286 MAQKLVKCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 286 ~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
++..+..++.+. +...++..-++--......|-.....+..|+..+...|+.++|....+++.....
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 445555555551 1122222222222222222322222234678888999999999999988876443
No 322
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.71 E-value=8.5 Score=36.17 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=107.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ--TYESLIHGSLK 226 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~ 226 (423)
...+..|+.+-+..++ + .|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...++
T Consensus 7 ~~A~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 3445567776554444 4 566666432 344556666778875 445556667666533 12345566677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCHH
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIP---ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVD 301 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~ 301 (423)
.|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 888877655553 33222111 1123334445566664 5555566676655331 122344555678776
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH--HHHHHHHhhccccchHHHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV--EMVICSYFRCAAYDRLDLF 379 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~ 379 (423)
-+..++ +.|..++.....-...+...+..|+.+ +.+.+.+.|..++..... ..++...+..|..+.++.+
T Consensus 150 ~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L 221 (413)
T PHA02875 150 GIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221 (413)
T ss_pred HHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence 554444 444433321100112233345566654 444455666654322221 3455544556665554444
Q ss_pred HHHHhCCCcccH
Q 014502 380 LDHIKGSYKLRR 391 (423)
Q Consensus 380 ~~~~~~~~~p~~ 391 (423)
+..|..++.
T Consensus 222 ---l~~gad~n~ 230 (413)
T PHA02875 222 ---IKRGADCNI 230 (413)
T ss_pred ---HHCCcCcch
Confidence 456666653
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.42 E-value=2.6 Score=24.97 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 396 FLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
-+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999887654
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.30 E-value=2.3 Score=22.82 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 394 YDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
+-.+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888999999999999988753
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.93 E-value=47 Score=31.37 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=62.8
Q ss_pred CChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 122 QNVPFA-MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200 (423)
Q Consensus 122 ~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 200 (423)
|++..| .++|+-+....-.|+....-+.| ....|+++.+...+..... -+.....+...+++...+.|++++|..
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 443333 34555555443344444333333 3456677777666665543 223444566666777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 201 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
.-+-|....++ +...........-..|-+|++...|++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 77666665554 443333333334445666666666666544
No 326
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.81 E-value=14 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
+..+.++.+..-++.|++.....-+.+|.+.+|+..|.++++-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444555555566666666666666666666666666666665543
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.71 E-value=65 Score=32.22 Aligned_cols=375 Identities=15% Similarity=0.085 Sum_probs=179.8
Q ss_pred HHHH-HhcCCchhHHHHHHHhhhc----cCCcChhhHHHH-HHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 014502 43 LISR-LLQVPVSQIKTTLDSVDIF----AFNSSQFSWDAL-ITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI 115 (423)
Q Consensus 43 ll~~-l~~~~~~~~~~~~~~m~~~----g~~p~~~~~~~l-i~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~ 115 (423)
++.. +.+.+...+...+++..+. +..+-...|.-+ +..+ ..+++..|.+.++.+...-...+.|-..++..++
T Consensus 105 ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 105 LLARIYFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 4433 4444544466666655222 222323333333 2222 3469999999976655544344556667776666
Q ss_pred HHHh--cCCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhc------CC-C
Q 014502 116 ALSG--KVQNVPFAMHVFTSMEAQG---------IKPDSAVFNSLICACL--CSGDVVTALSLFEIMVSS------EE-Y 175 (423)
Q Consensus 116 ~~~~--~~~~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~------~~-~ 175 (423)
.+.. +.+..+.+.+..+++.... -.|...+|..+++.++ ..|+++.+.+.++++.+. .. .
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 6655 5566777777777764322 1345667777776554 567777777666555331 10 0
Q ss_pred ---C-------------------CCHHh---------HHHHHHH--HHhcCCHHHHHHHH-------HHHH-HCCCCCC-
Q 014502 176 ---K-------------------PNSKT---------YDAFISG--FSSLGNVDAMNKWY-------AANI-AAGFSVN- 213 (423)
Q Consensus 176 ---~-------------------p~~~~---------~~~li~~--~~~~~~~~~a~~~~-------~~m~-~~~~~~~- 213 (423)
. |.... ..-++.+ .+..+..+.|.+++ ++.. .....++
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 0 11111 1112222 22334443554444 4444 1111111
Q ss_pred -------HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHhcCCHHHHH
Q 014502 214 -------VQTYESLIHG---------SLKARDFDSVDRFYEEMMSLGI-IPS-----IPILEKVLEG--LCARRKLDRVK 269 (423)
Q Consensus 214 -------~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~~li~~--~~~~g~~~~a~ 269 (423)
...|...+.. .+-.+++..|.+.++.|....- .|+ ...+...+.+ +...|+.+.|.
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~ 424 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL 424 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence 1222222222 2346889999999998875311 121 2233333433 34569999999
Q ss_pred HHHH--------HHHhCCCccCHHhHHHH--HHHHHhcC--CHHH--HHHHHHHHHhC-CCCCchHHHHHHHH-HHHHHh
Q 014502 270 SFLK--------FLLGGGWKINENMAQKL--VKCYCELG--RVDE--LEEQLETLTKC-NQSPEVLLHFFSGI-IRLYAL 333 (423)
Q Consensus 270 ~~~~--------~~~~~g~~~~~~~~~~l--i~~~~~~g--~~~~--a~~~~~~~~~~-~~~p~~~~~~~~~l-i~~~~~ 333 (423)
..|. .....+...+..++..+ +-.+...+ ..++ +.++++.+... ...|+....++..+ +.++..
T Consensus 425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~ 504 (608)
T PF10345_consen 425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNT 504 (608)
T ss_pred HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhh
Confidence 9997 45555555555555432 11222222 2223 67777766552 22333322224444 333332
Q ss_pred cCCh--hHHHHHHHHHH-----hCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH---HHhCCCcccHHHH-----HHH
Q 014502 334 SDRL--DDVEYSVGRMG-----KQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD---HIKGSYKLRRATY-----DFL 397 (423)
Q Consensus 334 ~g~~--~~a~~~~~~m~-----~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~---~~~~~~~p~~~~~-----~~l 397 (423)
.... .++...+.+-. ..+...--..+++.|..-+. .|+. |..+.... +..+...-....| ..+
T Consensus 505 ~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l 583 (608)
T PF10345_consen 505 FEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGML 583 (608)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 2221 23333332221 11111100222343434443 4555 33333222 2222111123345 344
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 014502 398 VAGYRRAGLSGKLDSVINEMK 418 (423)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~m~ 418 (423)
...+...|+.++|.....+..
T Consensus 584 ~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 584 ADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHcCcHHHHHHHHHHHH
Confidence 556788899999999888764
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.53 E-value=5.4 Score=21.54 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.+|..+...|...|++++|.+.|++-.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678889999999999999999988654
No 329
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=36 Score=29.09 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 390 RRATYDFLVAGYRRAGLSGKLDSVIN 415 (423)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (423)
+..+...|+.+| ..|+.+++.+++.
T Consensus 227 d~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 227 DSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 466788888887 4688888777653
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.40 E-value=31 Score=28.31 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=51.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF-----ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
...+...|++++|+.-++.... .|....+..+ -+.....|.+|+|...++.....+.. ......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 3455666777777777766654 1333333333 34455667777777777666644322 22233334566
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 014502 225 LKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~ 244 (423)
...|+-++|..-|+...+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 77777777777777766654
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.09 E-value=47 Score=30.20 Aligned_cols=174 Identities=11% Similarity=0.041 Sum_probs=86.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154 (423)
Q Consensus 76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 154 (423)
..+.++..++++++...++.....+...-. ....+|........+...+.+..++.+-..... .+
T Consensus 35 ~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~------------ 100 (352)
T PF02259_consen 35 RALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QN------------ 100 (352)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--cc------------
Confidence 334445888999888886554443332222 233344444444444444444444443332210 01
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (423)
Q Consensus 155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 234 (423)
..+.....+.+++=. ....++..++..++..-.- ++..+ ........+|..+...+.+.|.++.|.
T Consensus 101 -~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~---------~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~ 166 (352)
T PF02259_consen 101 -PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRL---------VLSLI--LLPEELAETWLKFAKLARKAGNFQLAL 166 (352)
T ss_pred -HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHH---------HHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHH
Confidence 111222233333222 1335555566555532110 11100 112334556777777778888888888
Q ss_pred HHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 235 RFYEEMMSLGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 235 ~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
..+..+...+... +......-....-..|+..+|...+++..+
T Consensus 167 ~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 167 SALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777776533111 233444445556667777777777777766
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.11 E-value=22 Score=29.70 Aligned_cols=75 Identities=8% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CccCHHhHHHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKLVK 292 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 292 (423)
.+..++.+.+.+...+|+...++-.+.+ +.|.-+-..+++.+|-.|++++|..-++-.-... ..+...+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566667777777777666555443 2334445566677777777777766555444321 2233445555554
No 333
>PRK09687 putative lyase; Provisional
Probab=78.98 E-value=45 Score=29.41 Aligned_cols=234 Identities=13% Similarity=-0.048 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHH
Q 014502 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV----DAMNKWYAANIAAGFSVNVQT 216 (423)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~ 216 (423)
+|.......+.++...|.. ++...+..+.+ .+|...=...+.++.+.|+. +++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4777777777777777653 34444444544 24555555566666666653 4566666666433 445555
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 217 YESLIHGSLKARDF-----DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 217 ~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
-...+.++...+.. ..+...+..... .++..+=...+.++++.++. .+...+-.+.+. +|..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 55555655554321 223333333332 33555555666677766663 455555555542 3444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhc
Q 014502 292 KCYCELG-RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370 (423)
Q Consensus 292 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 370 (423)
.++++.+ +-..+...+..+.. .++..+ -...+.++.+.|+. .|+..+-+..+.+. .....+.++...
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~V--R~~A~~aLg~~~~~-~av~~Li~~L~~~~------~~~~a~~ALg~i 248 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEI--RIEAIIGLALRKDK-RVLSVLIKELKKGT------VGDLIIEAAGEL 248 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHH--HHHHHHHHHccCCh-hHHHHHHHHHcCCc------hHHHHHHHHHhc
Confidence 5666543 13345555555542 233333 45666777777764 44444444444321 234566777777
Q ss_pred cccchHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 014502 371 AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYR 402 (423)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 402 (423)
|+.++...+.++... .||...-...++++.
T Consensus 249 g~~~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDKTLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CCHhHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777677777666653 346555555555543
No 334
>PRK11906 transcriptional regulator; Provisional
Probab=78.92 E-value=59 Score=30.69 Aligned_cols=163 Identities=7% Similarity=-0.019 Sum_probs=104.7
Q ss_pred HhH--HHHHHHHHhcC-----CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 014502 180 KTY--DAFISGFSSLG-----NVDAMNKWYAANIAA-GFSVN-VQTYESLIHGSL---------KARDFDSVDRFYEEMM 241 (423)
Q Consensus 180 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~~-~~~~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 241 (423)
..| ...+++..... ..+.|..+|.+.... .+.|+ ...|..+-.++. ...+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666665532 346788899988832 34444 333433332222 1234556777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
+.+ .-|......+..+....++++.|..+|++.... .||. .+|....-.+.-.|+.++|.+.+++..+ ..|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhh
Confidence 766 567777777777778888899999999999885 4553 3454455556678999999999999777 346544
Q ss_pred HHH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 321 LHF-FSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 321 ~~~-~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
... ....++.|+.. ..++|+.++.+-.
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 321 23334466654 4677777775543
No 335
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.89 E-value=31 Score=28.45 Aligned_cols=86 Identities=8% Similarity=0.040 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502 260 CARRKLDRVKSFLKFLLGGGWKINE-----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
...|++++|..-|.+.+... ++.. ..|..-..++.+.+.++.|..-..+.++.+ |+..-. ..--..+|.+.
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kA-l~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKA-LERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHH-HHHHHHHHHhh
Confidence 34555555555555555431 1111 123333334455555555555555555422 322110 11123345555
Q ss_pred CChhHHHHHHHHHHh
Q 014502 335 DRLDDVEYSVGRMGK 349 (423)
Q Consensus 335 g~~~~a~~~~~~m~~ 349 (423)
..+++|++-|+++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666666665555
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.04 E-value=31 Score=26.93 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=9.4
Q ss_pred HccCCHHHHHHHHHHHHh
Q 014502 154 LCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 154 ~~~g~~~~A~~~~~~m~~ 171 (423)
...|++++|.++|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 445555555555555544
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.88 E-value=23 Score=29.62 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIH 222 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~ 222 (423)
+.+..++.+.+.+...+|+...++-.+. -+.|..+-..+++.++-.|++++|..-++-.-... ..+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455667777788888888877766652 13345556667788888888888877666555432 2334455666654
No 338
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.34 E-value=79 Score=31.32 Aligned_cols=63 Identities=3% Similarity=-0.004 Sum_probs=38.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 245 (423)
....|..|++.+. .=+.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3445666665543 4445666677777653 1 1 56777778888888876666666665555544
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.24 E-value=6.5 Score=23.30 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 014502 290 LVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 340
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=76.95 E-value=53 Score=29.07 Aligned_cols=171 Identities=8% Similarity=0.021 Sum_probs=91.1
Q ss_pred CCCccccHHHH-HHHhcCCch--hHHHHHHHhhhccCCcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhH
Q 014502 34 STSVSSSNPLI-SRLLQVPVS--QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE 110 (423)
Q Consensus 34 ~~~~~~~~~ll-~~l~~~~~~--~~~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~ 110 (423)
.|+...+++|+ ..|.+.|.. -+.++|.+... ....|.+|++++.|..+.-+.-| .+|+..+
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~------Ek~i~~lis~Lrkg~md~rLmef----------fPpnkrs 225 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV------EKDINDLISSLRKGKMDDRLMEF----------FPPNKRS 225 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh------hccHHHHHHHHHhcChHhHHHHh----------cCCcchh
Confidence 44445555555 557777732 34777777642 33458889999888877644332 3667666
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHhcCCCCCCHH----hHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFE-IMVSSEEYKPNSK----TYDAF 185 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~p~~~----~~~~l 185 (423)
-......+...|--+...-.-.++-.- .-...-..+..-..+...+++...... +|++ .++ |+.. .|..+
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~nl-Pe~eVi~ivWs~i 300 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NNL-PETEVIGIVWSGI 300 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cCC-CCceEEeeeHhhh
Confidence 666666665555322222111111100 011222333444445556667665554 4554 444 5443 56666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 186 ISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (423)
Q Consensus 186 i~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 234 (423)
+++---..+- --|.+.++. .-+|.-|+.+++..|+.+-.+
T Consensus 301 MsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 301 MSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 6543222111 123333333 446888999999999987654
No 341
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.90 E-value=22 Score=24.72 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| |+- |..++.++...|+-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~a----F~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EGW----FSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcH----HHHHHHHHHHcCchhhhh
Confidence 4556666666664 244444444333335577777777777776 44 322 666777777666655443
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.11 E-value=9 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555543
No 343
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.02 E-value=18 Score=27.16 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 127 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
..+.++.+....+.|++.+....+++|-+.+++..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444555566666666666666666666666666666553
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.86 E-value=44 Score=29.13 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh-cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVS-SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
..=|.+++..|++.+++...-+--+ -.+++|. ....-|-.|.+.+....+.++-..-....-.-+...|.+++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3446777777777777765544332 1223333 344445567778887777777766665433334455776666554
Q ss_pred h-----cCCHHHHHHHH
Q 014502 226 K-----ARDFDSVDRFY 237 (423)
Q Consensus 226 ~-----~g~~~~a~~~~ 237 (423)
. .|.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 47788877765
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.59 E-value=36 Score=26.47 Aligned_cols=81 Identities=4% Similarity=-0.032 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGF-----SVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKV 255 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (423)
.|.++.-....+++....++++.+..... ..+..+|.+++.+..+..- ---+..+|+-|++.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555555432100 1234455556655544433 23345555555555555666666666
Q ss_pred HHHHHhc
Q 014502 256 LEGLCAR 262 (423)
Q Consensus 256 i~~~~~~ 262 (423)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6555444
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.46 E-value=27 Score=25.06 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=5.4
Q ss_pred ccCCHHHHHHHHH
Q 014502 155 CSGDVVTALSLFE 167 (423)
Q Consensus 155 ~~g~~~~A~~~~~ 167 (423)
..|++++|..+.+
T Consensus 51 NrG~Yq~Al~l~~ 63 (115)
T TIGR02508 51 NRGDYQSALQLGN 63 (115)
T ss_pred ccchHHHHHHhcC
Confidence 3444444444433
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.01 E-value=85 Score=30.53 Aligned_cols=87 Identities=8% Similarity=0.132 Sum_probs=62.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh-cCCChhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHccC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG-KVQNVPFAMHVFTSMEAQ-GIK-PDSAVFNSLICACLCSG 157 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g 157 (423)
.+-|..+.+.++ |++-..+.+-+...|......+. ..|+.+...+.|+..... |.. -+...|...|.--...+
T Consensus 90 ~klg~~~~s~~V----fergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk 165 (577)
T KOG1258|consen 90 YKLGNAENSVKV----FERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK 165 (577)
T ss_pred HHhhhHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc
Confidence 677888888888 45555555556666666655554 567888888888887764 321 24557888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 014502 158 DVVTALSLFEIMVS 171 (423)
Q Consensus 158 ~~~~A~~~~~~m~~ 171 (423)
++.....+|++..+
T Consensus 166 s~k~v~~iyeRile 179 (577)
T KOG1258|consen 166 SWKRVANIYERILE 179 (577)
T ss_pred cHHHHHHHHHHHHh
Confidence 88888889988887
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.52 E-value=1.1e+02 Score=31.50 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=121.7
Q ss_pred chhHHHHHHHhhhccCCcCh-------hhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcC
Q 014502 52 VSQIKTTLDSVDIFAFNSSQ-------FSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKV 121 (423)
Q Consensus 52 ~~~~~~~~~~m~~~g~~p~~-------~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~ 121 (423)
..++..++.+....-..|+. ..|+.+=.. ...++++.+.++-+....+..+.-. +....+..+..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Confidence 34455566555443333322 255555444 5889999999997766665544433 6778888899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHccCCH--HHHHHHHHHHHhcCC-CCC----CHHhHHHHHHHH
Q 014502 122 QNVPFAMHVFTSMEAQGIKPDSAVF---NSLI--CACLCSGDV--VTALSLFEIMVSSEE-YKP----NSKTYDAFISGF 189 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p~~~~~---~~li--~~~~~~g~~--~~A~~~~~~m~~~~~-~~p----~~~~~~~li~~~ 189 (423)
|++++|..+..+..+.--.-+...+ ..+. ..+...|+. .+....|........ -+| -..++..+..++
T Consensus 511 G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~ 590 (894)
T COG2909 511 GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW 590 (894)
T ss_pred chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 9999999888776654222233333 2222 234456633 333444444433111 111 223455555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHH--HH
Q 014502 190 SSL-GNVDAMNKWYAANIAAGFSVNVQTY--ESLIHGSLKARDFDSVDRFYEEMMSLGII----PSIPILEKVLEG--LC 260 (423)
Q Consensus 190 ~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~--~~ 260 (423)
.+. +...++..-++--......|-...+ ..|+......|+.++|...++++...... ++..+-...++. -.
T Consensus 591 ~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl 670 (894)
T COG2909 591 LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWL 670 (894)
T ss_pred HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhc
Confidence 552 1122222333332222222222222 36678888899999999999888753222 222222233332 23
Q ss_pred hcCCHHHHHHHHHH
Q 014502 261 ARRKLDRVKSFLKF 274 (423)
Q Consensus 261 ~~g~~~~a~~~~~~ 274 (423)
..|+.+.+.....+
T Consensus 671 ~qg~~~~a~~~l~~ 684 (894)
T COG2909 671 AQGDKELAAEWLLK 684 (894)
T ss_pred ccCCHHHHHHHHHh
Confidence 56787777766555
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.29 E-value=61 Score=28.53 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (423)
.....|..+|.+.+|.++-++..... +.+...+-.++..+...||--.+.+-++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33455666666666666666555443 344555566666666666655555554444
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.32 E-value=28 Score=28.12 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
++|.+.|++... ..|+..+|+.-+.... +|-+++.++.+.
T Consensus 97 ~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 97 EKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 344444444443 2466666665555442 244444444444
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.77 E-value=83 Score=29.51 Aligned_cols=207 Identities=8% Similarity=0.031 Sum_probs=100.1
Q ss_pred HhcCCchhHHHHHHHhhhccCCcChhh---HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHh--HHHHHHHHHhcC
Q 014502 47 LLQVPVSQIKTTLDSVDIFAFNSSQFS---WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKV 121 (423)
Q Consensus 47 l~~~~~~~~~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~--~~~~l~~~~~~~ 121 (423)
-++.|.. ++++.+.+.|..|+... ++.|-.++..|+.+-...+ ++. +..|+.. ...+.+...++.
T Consensus 9 A~~~g~~---~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~~---ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 9 AILFGEL---DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLL----MKH---GAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHhCCH---HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----HhC---CCCccccCCCcccHHHHHHHC
Confidence 3444554 45556666788887543 3344444666665433332 332 1123211 122345556677
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHHhcCCHH
Q 014502 122 QNVPFAMHVFTSMEAQGIKPDSA---VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFSSLGNVD 196 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~ 196 (423)
|+.+.+..+++ .|...+.. .-.+.+...+..|+.+- ++.+.+ .|..|+... -.+.+...+..|+.+
T Consensus 79 g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~i----v~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 79 GDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDI----MKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHH----HHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 88776655554 33222111 11234444555666643 333444 455554321 123444555677765
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHH
Q 014502 197 AMNKWYAANIAAGFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---LEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~ 270 (423)
-+ +.+.+.|..++ ...++. +...+..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+
T Consensus 150 ~v----~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GI----ELLIDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HH----HHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 43 33444554443 223333 33344556654 3444566666665432 123444445566654
Q ss_pred HHHHHHhCCCccCHH
Q 014502 271 FLKFLLGGGWKINEN 285 (423)
Q Consensus 271 ~~~~~~~~g~~~~~~ 285 (423)
+.+.+.+.|..++..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 455666678777643
No 352
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=71.50 E-value=55 Score=26.80 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=12.3
Q ss_pred HhcCChhHHHHHHHHHHh
Q 014502 402 RRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 402 ~~~g~~~~a~~~~~~m~~ 419 (423)
.+.|++++|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456777777777777653
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.35 E-value=16 Score=24.82 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHHHHHHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQ 306 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 306 (423)
..++.++|+..|...++.-..+. ..++..++.+|+..|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766533322 12556667777777777765543
No 354
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.34 E-value=23 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=16.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555443
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.32 E-value=16 Score=22.07 Aligned_cols=33 Identities=3% Similarity=0.164 Sum_probs=17.9
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151 (423)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 151 (423)
.+.|-++++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555555666655555555555554443
No 356
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.13 E-value=32 Score=23.95 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=27.9
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 162 (423)
++...+.++.+..-...+-.+-...|+.+.|.++++.+. + .+..|...+.++-..|.-+-|
T Consensus 25 ~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 25 CDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 344444444444444444433334455555555555555 3 223444555555544444333
No 357
>PHA03100 ankyrin repeat protein; Provisional
Probab=70.84 E-value=58 Score=31.24 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=2.9
Q ss_pred HhcCCCh
Q 014502 118 SGKVQNV 124 (423)
Q Consensus 118 ~~~~~~~ 124 (423)
.++.|+.
T Consensus 42 A~~~~~~ 48 (480)
T PHA03100 42 AKEARNI 48 (480)
T ss_pred hhccCCH
Confidence 3444443
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.62 E-value=37 Score=24.43 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 279 (423)
..+...|+|++|..+.+.+ ..||...|..+.. .+.|..+.+..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455556666665554443 2455555544432 24455555554455555444
No 359
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=69.93 E-value=97 Score=28.97 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=46.0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH--------HHhcCCHHHHHHHHHHHHh
Q 014502 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC--------YCELGRVDELEEQLETLTK 312 (423)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~ 312 (423)
...+.||.++.+.+.+.++..-..+-...+|+--.+.+- |-...+-++|-. -.+...-+++.++++.|..
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 356789999888888888877778888888888777653 333333333221 1234446778888887754
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.57 E-value=70 Score=27.24 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH
Q 014502 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285 (423)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 285 (423)
.|.+.....++..|. .+++++|.+++.++-+.|+.|...
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 466666666665543 567788888888887777766543
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.04 E-value=2.3e+02 Score=32.98 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=87.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 113 CLIALSGKVQNVPFAMHVFTSM----EAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
.+..+-.+++.+.+|...++.- ++. ......|-.+...|+.-+++|....+...-.. .|+ .+. -|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s--l~~-qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS--LYQ-QILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc--HHH-HHHH
Confidence 4555666788888888888873 221 11223444555588888888888777764222 233 233 4446
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK-VLEGLCARRKLDR 267 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~ 267 (423)
....|+++.|...|+.+.+.+. +...+++.++......|.++.++...+...... .+....+++ =+.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 6678999999999999887752 246677777777777777777666444443321 122222222 2333345555555
Q ss_pred HHHH
Q 014502 268 VKSF 271 (423)
Q Consensus 268 a~~~ 271 (423)
....
T Consensus 1537 ~e~~ 1540 (2382)
T KOG0890|consen 1537 LESY 1540 (2382)
T ss_pred hhhh
Confidence 4444
No 362
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.93 E-value=1.1e+02 Score=29.12 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=83.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCC--CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC 153 (423)
Q Consensus 76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 153 (423)
++-.++..|+...|-+.. ++.+ +..+ |+.... ........|+++.+.+.+...... +-....+...+++..
T Consensus 295 si~k~~~~gd~~aas~~~---~~~l-r~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 295 SITKQLADGDIIAASQQL---FAAL-RNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHhhccCHHHHHHHH---HHHH-HhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 334447889988887764 3333 3333 554433 344566789999999988776543 233566788889999
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 209 (423)
.+.|++++|...-.-|.. ..+ .+......-....-..|-+|++.-.|+++....
T Consensus 368 ~~l~r~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLS-NEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhc-ccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999998886 333 233333333333445677899999999987654
No 363
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.39 E-value=19 Score=23.22 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m 240 (423)
.+|.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 364
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.37 E-value=91 Score=28.09 Aligned_cols=67 Identities=21% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh-----CCCccCHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSL---GIIPSIPILE--KVLEGLCARRKLDRVKSFLKFLLG-----GGWKINEN 285 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~ 285 (423)
.++...-+.++.++|+++++++.+. --.|+...|. .+...+...||..++.+++++..+ .|++|+..
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555566777777777777542 1245555443 334445566777777777777665 45555433
No 365
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.29 E-value=5.9 Score=30.01 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCch
Q 014502 297 LGRVDELEEQLETLTKCNQSPEV 319 (423)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~~p~~ 319 (423)
-|.-.+|..+|.+|.+.|..|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc
Confidence 34455566666666666666655
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.50 E-value=15 Score=32.27 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 281 (423)
|+..|....+.||+++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.20 E-value=70 Score=26.33 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=53.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCccCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502 257 EGLCARRKLDRVKSFLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
..+...|++++|..-++........-+. .+--.|.......|.+|+|...++.....+..+.. ...--+.+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~----~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIV----AELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHH----HHHhhhHHHHc
Confidence 4456677777777777766653211111 11122445566677788887777776664432211 22334667777
Q ss_pred CChhHHHHHHHHHHhCC
Q 014502 335 DRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 335 g~~~~a~~~~~~m~~~~ 351 (423)
|+-++|..-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888887777655
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.04 E-value=16 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=12.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 014502 148 SLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
.+|.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555555555555543
No 369
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=66.50 E-value=78 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.033 Sum_probs=34.6
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
-+.+||.|.-.+...|+++.|.+.|+...+....-+-...|.-|. +--.|++..|.+=|.+.-+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 345666666666677777777777777666532212222222222 2234666666665555544
No 370
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.46 E-value=84 Score=26.97 Aligned_cols=199 Identities=12% Similarity=0.087 Sum_probs=87.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
.|.....+|-...++++|...+.+..+ +..-+...|++ ...++.|.-+.+++.+. .--+..|+.....|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 344445566666777777766666553 22233322221 12234444455554432 11233455555666
Q ss_pred HhcCCHHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 225 LKARDFDSVDRFYEEMMS--LGIIPSIP--ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~--~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
..+|.++.|-..+++.-+ .++.|+.. .|..-+...-..++...|.+ .+...-..+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHh
Confidence 666666665555544422 12333321 12222222222222222222 233333444555555
Q ss_pred HHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCChHhHHHHHHHHhhc
Q 014502 301 DELEEQLETLTK----CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG--LSFKSAEDVEMVICSYFRC 370 (423)
Q Consensus 301 ~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~~l~~~~~~~ 370 (423)
++|-..+.+-.. ....++.- ..|-..|-.|....++..|...++.-.+.+ ..+.+..+...|+.+|-..
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~-k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQC-KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG 241 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHH-HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence 555444433211 11111111 114445555666667777777776643322 1223345556666666543
No 371
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.20 E-value=84 Score=26.86 Aligned_cols=103 Identities=10% Similarity=0.020 Sum_probs=67.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR 336 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 336 (423)
-|.....++.|...+.+.+. +.|+.. .|+.=+.++.+..+++.+..--....+ +.|+..-. .-.+-........
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~-h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKA-HYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHH-HHHHHHHHHhhcc
Confidence 45666778888887766666 567764 455567788888888888777776666 55766554 3345566677778
Q ss_pred hhHHHHHHHHHHh----CCCCCCChHhHHHHHHH
Q 014502 337 LDDVEYSVGRMGK----QGLSFKSAEDVEMVICS 366 (423)
Q Consensus 337 ~~~a~~~~~~m~~----~~~~~~~~~~~~~l~~~ 366 (423)
+++|+..+.+..+ ..+. +..+....|..+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~-~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFT-FGDDIPKALRDA 126 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHH
Confidence 8888888877643 2222 224555555544
No 372
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.18 E-value=94 Score=28.02 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCccCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchHH
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLLGG---GWKINENMA--QKLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLL 321 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 321 (423)
.++...-+.++.++|.++++++.+. --.|+...| .....++...|+.+++.+.+++..+ .++.|+..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3444445566788888888877643 223555544 3455666777888888888887776 455554443
No 373
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.17 E-value=49 Score=24.15 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 014502 191 SLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~ 208 (423)
+.|.-+++...+.++...
T Consensus 81 klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 81 KLGLASALESRLTRLASS 98 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-
T ss_pred hhccHHHHHHHHHHHHhC
Confidence 444444444444444433
No 374
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.00 E-value=76 Score=26.31 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHH
Q 014502 223 GSLKARDFDSVDRFYEEMMSLGIIPSI------PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYC 295 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 295 (423)
-+.+.|++++|..-|.+..+. .|.. ..|..-..++.+.+.++.|++--.+.++.+ |+ ......-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 356677777777777776653 2221 223333445566777777776666666543 22 222223345677
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 014502 296 ELGRVDELEEQLETLTKC 313 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~ 313 (423)
+..++++|..=+.++.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 778888888888888773
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.00 E-value=50 Score=24.20 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.49 E-value=37 Score=27.87 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
.|+..+|..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777777777777777777666654
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.02 E-value=28 Score=21.01 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=4.7
Q ss_pred HHHHHHHHHHCCC
Q 014502 233 VDRFYEEMMSLGI 245 (423)
Q Consensus 233 a~~~~~~m~~~~~ 245 (423)
+..++++|.+.|+
T Consensus 21 ~~~~l~~l~~~g~ 33 (48)
T PF11848_consen 21 VKPLLDRLQQAGF 33 (48)
T ss_pred HHHHHHHHHHcCc
Confidence 3333333333333
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.36 E-value=63 Score=31.43 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=87.4
Q ss_pred hhccCCcChhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 014502 63 DIFAFNSSQFSWDALITSLQS---SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139 (423)
Q Consensus 63 ~~~g~~p~~~~~~~li~~~~~---~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 139 (423)
....--|+..+..+++.-+.. ...+-+..+ +..|.+..-|--.+.|...-...-.|+...|...+........
T Consensus 563 d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~----~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p 638 (886)
T KOG4507|consen 563 DLKAKMPDDHARKILLSRINNYTIPEEEIGSFL----FHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAP 638 (886)
T ss_pred cccccCchHHHHHHHHHHHhcccCcHHHHHHHH----HHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccCh
Confidence 333444555555555554322 122223333 4455544445444444444444556788888887776654322
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (423)
Q Consensus 140 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (423)
.-.-+..-.+.....+.|...+|..++.+...- . .....++-.+.+++....+++.|++.|++..+.... +...-+.
T Consensus 639 ~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~ 715 (886)
T KOG4507|consen 639 LQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENS 715 (886)
T ss_pred hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 112233445556666677777888887776652 1 233446667778888888888888888887766432 4444455
Q ss_pred HHHHH
Q 014502 220 LIHGS 224 (423)
Q Consensus 220 li~~~ 224 (423)
|...-
T Consensus 716 l~~i~ 720 (886)
T KOG4507|consen 716 LKLIR 720 (886)
T ss_pred HHHHH
Confidence 54433
No 379
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.83 E-value=1.2e+02 Score=27.61 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH----HHHHhcCCHHHHHHHHHHHHhCC
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLV----KCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
+.+.++..-+......+-+..+.-=..+|.+|- ....+.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 445677788888888777766665556666543 22335566777776666666543
No 380
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.41 E-value=84 Score=25.58 Aligned_cols=21 Identities=5% Similarity=-0.038 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~ 207 (423)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555443
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.16 E-value=9.3 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHH
Q 014502 331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367 (423)
Q Consensus 331 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 367 (423)
.-..|.-.+|..+|++|.+.|-. |+.|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~p---PddW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNP---PDDWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCC---CccHHHHHHHh
Confidence 44456677899999999999975 77888887654
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.89 E-value=14 Score=18.58 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 392 ATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..|..+...+...|++++|...+++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788888889999999988887654
No 383
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.80 E-value=87 Score=27.83 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=33.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
++....+..+.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455555556666666666554 334445566777788888888888877654
No 384
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=61.11 E-value=86 Score=28.31 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAA 204 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 204 (423)
+-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 345555666666666655443 223 555555555555555555544443333
No 385
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.84 E-value=1.8e+02 Score=28.85 Aligned_cols=64 Identities=8% Similarity=0.118 Sum_probs=39.3
Q ss_pred cChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 014502 69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139 (423)
Q Consensus 69 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 139 (423)
+....|..|+..++.-+.++-.++ ++++.. . + ...+..++++....|-.+...-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l----~~~~~~-~-~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQL----WRQLYE-K-K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHH----HHHHHh-C-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455566777777777676666666 444432 1 1 45667777777777776666666666555443
No 386
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.14 E-value=92 Score=25.29 Aligned_cols=90 Identities=10% Similarity=0.012 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhH-------HHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc--c--hHHHHHHHHh------CC
Q 014502 324 FSGIIRLYALSDRLDD-------VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY--D--RLDLFLDHIK------GS 386 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~-------a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~--~--~~~~~~~~~~------~~ 386 (423)
|...+.-+++..+..+ |+.-|++... +.|+..+++..+..+|...+.. + .++.+++... ..
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 5555555555544434 4444444444 6677778887787777776542 1 1222222111 12
Q ss_pred CcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
..|+..+|+.-++... +|-++..++..+|
T Consensus 109 ~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4688888888877764 3556666665554
No 387
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.70 E-value=27 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAAGFS 211 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 211 (423)
+.-|....+.||+++|++++++.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555555555555555555555555543
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.34 E-value=1.7e+02 Score=28.16 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=78.4
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
.|-...-+++..++.+.+.+-++.+-.+|..-| -+...|-.++.+|..+ ..+.-..+++++.+ . .-|......-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve-~--dfnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE-Y--DFNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-h--cchhHHHHHH
Confidence 355555666666666666666666666666543 2455666666666665 44445566665554 2 1222233322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSV-----NVQTYESLIHGSLKARDFDSVDRFYEEMMS-LGIIPSIPILEKVLEGL 259 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~ 259 (423)
+.-+...++...+..+|......-++. =...|.-++..- ..+.|..+.+..+... .|...-...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 223333355555555555554432110 012333333211 2344444444444432 23333334444444555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 014502 260 CARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~ 278 (423)
....++++|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 5555555555555555544
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.30 E-value=1.3e+02 Score=26.58 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=21.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccCHH-------hHHHHHHHHHhcCCHHHHH
Q 014502 260 CARRKLDRVKSFLKFLLGGGWKINEN-------MAQKLVKCYCELGRVDELE 304 (423)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~~~~~g~~~~a~ 304 (423)
.+.+++++|...+.++...|...|.. +...+...|...|+...-.
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 34445555555555555554443332 2333455555555554433
No 390
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.68 E-value=92 Score=27.68 Aligned_cols=24 Identities=17% Similarity=-0.118 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 246 IPSIPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~ 269 (423)
.-|+..|..++.+|...|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 356666777777776666655543
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.59 E-value=75 Score=24.76 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 308 ETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 308 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
+.+.+.|.+++.. -..+++.+...++.-.|.++++++.+.+
T Consensus 10 ~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 10 ERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3344444444443 2344555555555555555555555543
No 392
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.93 E-value=1.4e+02 Score=26.79 Aligned_cols=175 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 122 QNVPFAMHVFTSMEAQGIKP-------------DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
++.+....+++.+++.+.-| |...+++|.. .+..++++-.+..++..+..|-..-...+-.....
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 014502 189 FSSLGNVDAMNKWYAANIAA----GFSVNVQTYESLIH-GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG--LCA 261 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~ 261 (423)
|++-|+.+.|++.+..-.+. |...|+.-+.+-+. .|....-+.+-++..+.+.+.|...+-..---.-.+ |..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 298 (423)
..++.+|-.+|-+....=-......|..++.--.-.|
T Consensus 194 vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 393
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.89 E-value=80 Score=31.26 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCchH
Q 014502 298 GRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
|+..+|.+.+-.+.+....|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 55555555555555555555443
No 394
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.87 E-value=1.1e+02 Score=27.76 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
+-|.+.|.+++|+..|..-... .| |.++|..-..+|.+...+..|..=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 4455566666666666554443 23 55555555556666655555544333
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.19 E-value=2.2e+02 Score=28.74 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 157 GDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD 234 (423)
Q Consensus 157 g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 234 (423)
.+.+.|..++.......+..+.. ..+..+.......+..+++..+++...... .|......-+..-.+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666654322222221 122233222222222444555555433221 12333333344444566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCc--------cCH-H-----hHH
Q 014502 235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG------------GWK--------INE-N-----MAQ 288 (423)
Q Consensus 235 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------g~~--------~~~-~-----~~~ 288 (423)
..+..|.... .-...-.-.+..++...|+.++|..+|+.+... |.+ |.. . --.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 411 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEM 411 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHH
Confidence 6666653322 122333344455545556666666666654211 111 000 0 011
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
.-+..+...|....|...+..+... ..+. . ...+.......|..+.++....
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~--~--~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS-RSKT--E--QAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-CCHH--H--HHHHHHHHHHCCCHHHHHHHHh
Confidence 1233455667777777777766653 2222 1 3344444556666666655544
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.67 E-value=79 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~ 244 (423)
++..+.+.++.-.|.++|+++.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3334444444444444444444443
No 397
>PHA03100 ankyrin repeat protein; Provisional
Probab=56.65 E-value=1.9e+02 Score=27.75 Aligned_cols=27 Identities=0% Similarity=-0.264 Sum_probs=14.0
Q ss_pred HHHHHhcCCchhHHHHHHHhhhccCCcChh
Q 014502 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQF 72 (423)
Q Consensus 43 ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~ 72 (423)
.++.-++.+.. ++++.+.+.|..|+..
T Consensus 38 ~L~~A~~~~~~---~ivk~Ll~~g~~~~~~ 64 (480)
T PHA03100 38 PLYLAKEARNI---DVVKILLDNGADINSS 64 (480)
T ss_pred hhhhhhccCCH---HHHHHHHHcCCCCCCc
Confidence 34444444554 4455555567766543
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.05 E-value=1.3e+02 Score=25.75 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 014502 327 IIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 327 li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
-+-.|-..|+.++|.++.++..+
T Consensus 175 svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 175 SVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455667888888877766554
No 399
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=55.72 E-value=2.3e+02 Score=28.42 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=60.2
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 175 YKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 175 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
+.++. ..|..|+..+ +.=+.++-.++++++...- .....+..+++++...|-...+.-+.+.+....+ ++...-.
T Consensus 341 ~~~~~~~~f~~Lv~~l-r~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~-~~~ea~~ 416 (618)
T PF01347_consen 341 VSKETLSKFSRLVRLL-RTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL-TDDEAAQ 416 (618)
T ss_dssp --TTHHHHHHHHHHHH-TTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S--HHHHHH
T ss_pred cchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 34443 3466666554 4556777888888886432 3578899999999999987766666665555443 3333333
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhC-CCccCHH-------hHHHHHHHHHhc
Q 014502 254 KVLEGLCAR-RKLDRVKSFLKFLLGG-GWKINEN-------MAQKLVKCYCEL 297 (423)
Q Consensus 254 ~li~~~~~~-g~~~~a~~~~~~~~~~-g~~~~~~-------~~~~li~~~~~~ 297 (423)
.+....... .=..+..+.+..|.+. ....+.. ++..++.-++..
T Consensus 417 ~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 417 LLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 333333333 2223444444445443 2223332 344555555554
No 400
>PHA02798 ankyrin-like protein; Provisional
Probab=55.53 E-value=1.2e+02 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCccCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 014502 268 VKSFLKFLLGGGWKINEN---MAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 318 (423)
-.++.+.+.+.|..++.. -.+.|. ..+..+.. .-.++.+.+.+.|..++
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh-~a~~~~~~-~~~~iv~~Ll~~Gadvn 139 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLY-CLLSNGYI-NNLEILLFMIENGADTT 139 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHH-HHHHcCCc-ChHHHHHHHHHcCCCcc
Confidence 356666666666655433 222332 23333322 22344555555565554
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.50 E-value=1.1e+02 Score=24.97 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVN--VQTY-----ESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
++.|+.+|+.+.+.-..|. ...- -..+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666655432221 1111 1234467888888888888888766
No 402
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.33 E-value=1.2e+02 Score=25.00 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
-|.....+.+.|..+.|..++++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHhc
Confidence 56666666667777777666663
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.13 E-value=2.3e+02 Score=28.36 Aligned_cols=168 Identities=14% Similarity=0.046 Sum_probs=91.0
Q ss_pred CHhHHHHHHHHHh-cCCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CCC
Q 014502 107 CLDEYACLIALSG-KVQNVPFAMHVFTSMEAQGIKPDSA-----VFNSLICACLCSGDVVTALSLFEIMVSSEE---YKP 177 (423)
Q Consensus 107 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p 177 (423)
+..++-.+...+. ...+++.|+..+++.....-+++.. ....++..+.+.+... |...+++..+... ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4555666666666 5677888888887664432222211 1234455566665555 7777777654211 112
Q ss_pred CHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC-------
Q 014502 178 NSKTYDAF-ISGFSSLGNVDAMNKWYAANIAAG---FSVNVQTYESLIHGSL--KARDFDSVDRFYEEMMSLG------- 244 (423)
Q Consensus 178 ~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~------- 244 (423)
-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+..+++....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22333333 333333468888888877665432 2444555555555443 3455666777776663321
Q ss_pred --CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 014502 245 --IIPSIPILEKVLEGLC--ARRKLDRVKSFLKFL 275 (423)
Q Consensus 245 --~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 275 (423)
-.|-..+|..+++.++ ..|+++.+...++++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234556666666554 456666666555554
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.52 E-value=1.6e+02 Score=26.34 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 196 DAMNKWYAANIAAGF----SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (423)
+.|.+.|++....+. ..+...-..++....+.|..+.-..+++.... .++...-..++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 344455555444211 22333333444444444444433333333332 23444455555555555555555555
Q ss_pred HHHHHhC
Q 014502 272 LKFLLGG 278 (423)
Q Consensus 272 ~~~~~~~ 278 (423)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.44 E-value=87 Score=30.99 Aligned_cols=61 Identities=10% Similarity=-0.063 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL 275 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 275 (423)
+...-..++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+.+.|+...+..+.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444445555555555555555544422211 1123334444444444444444443333
No 406
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.01 E-value=2e+02 Score=29.15 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
++....+....+..|+..+......++... .|++..++.+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 444455554444456666666666555543 4777777777766554
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.03 E-value=1.1e+02 Score=30.28 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=57.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcC-CCCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVD------AMNKWYAANIAAGFSVNVQTYESL 220 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 220 (423)
++..+|..+|++..+.++++...... |-+.=...||..|+-..+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887521 11222456788888888888764 3444444443 45578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m 240 (423)
+.+-...-+-....-++.++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHhhcChHhHHhccHHHHHH
Confidence 77665533333333333333
No 408
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.26 E-value=72 Score=23.28 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m 240 (423)
.++..|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455566666666666665554
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.13 E-value=1.4e+02 Score=24.60 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcC
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAG 405 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 405 (423)
+++..|.+.-+|.+..++++.|.+..+..+ .+.++... .+..+--..-|.....+.+.|
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft-------~LKGL~g~--------------e~~asrCqivn~AaEiFL~sg 195 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFT-------SLKGLTGP--------------EKLASRCQIVNIAAEIFLKSG 195 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hccCccCc--------------cccCchhhhHHHHHHHHHHcC
Confidence 455667777777777777777776444321 01111100 011223345566777778888
Q ss_pred ChhHHHHHHHH
Q 014502 406 LSGKLDSVINE 416 (423)
Q Consensus 406 ~~~~a~~~~~~ 416 (423)
..|.|..++++
T Consensus 196 sidGA~~vLre 206 (233)
T PF14669_consen 196 SIDGALWVLRE 206 (233)
T ss_pred CchHHHHHHhc
Confidence 88888877764
No 410
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.13 E-value=1.8e+02 Score=25.98 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGI----IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
.+.|.+.|+.....+. ..+...-..++....+.|+.+....+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567788888776422 345566666777777888877766666666653 366777888899999999998899
Q ss_pred HHHHHHhCC-CCCchHHHHHHHHHHHHHhcCCh--hHHHHHHH----HHHhCCCCCCChHhHHHHHHHHhhcccc-chHH
Q 014502 306 QLETLTKCN-QSPEVLLHFFSGIIRLYALSDRL--DDVEYSVG----RMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLD 377 (423)
Q Consensus 306 ~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~--~~a~~~~~----~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 377 (423)
+++.+...+ +.+.. . ..++.++...+.. +.+.+.+. .+.+. .... ......++..+...-.. +.++
T Consensus 223 ~l~~~l~~~~v~~~d-~---~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~-~~~~~~~~~~~~~~~~t~~~~~ 296 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I---RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTN-SSALSRVIKSFAGNFSTEEQLD 296 (324)
T ss_dssp HHHHHHCTSTS-TTT-H---HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TT-SHCCHHHHHCCCTT--SHHHHH
T ss_pred HHHHHcCCcccccHH-H---HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCC-ChHHHHHHHHHhccCCCHHHHH
Confidence 999888854 44333 2 3444455534433 55555543 34332 2111 22455566555443322 3344
Q ss_pred HHHHHH
Q 014502 378 LFLDHI 383 (423)
Q Consensus 378 ~~~~~~ 383 (423)
.+.+..
T Consensus 297 ~~~~f~ 302 (324)
T PF11838_consen 297 ELEEFF 302 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.92 E-value=70 Score=27.60 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAA----G-FSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+-=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666666666666666655321 1 2233445555566666666666666554443
No 412
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.93 E-value=88 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=11.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 014502 148 SLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m 169 (423)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444455555666655555554
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.65 E-value=1.9e+02 Score=25.61 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCC-CHHHHHHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQ-------TYESLIHGSLKARDFDSVDRFYEEMMS---LGIIP-SIPILEKVL 256 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p-~~~~~~~li 256 (423)
-..+.+++++|+..+.++...|+..+.. +...+...|...|++..-.++.....+ .--+| ......+++
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3444555555555555555555444332 223344555555555544433322111 11112 122344444
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhCCCccC-----HHhHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCchHHHHHHH
Q 014502 257 EGLCA-RRKLDRVKSFLKFLLGGGWKIN-----ENMAQKLVKCYCELGRVDELEEQLET----LTKCNQSPEVLLHFFSG 326 (423)
Q Consensus 257 ~~~~~-~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~~~~~~ 326 (423)
.-+-. ...++....+.....+....-. ...-..++..+.+.|.+.+|..+.+. +++.+-.|+..+. +-.
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v-hll 170 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV-HLL 170 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh-hhh
Confidence 44432 2334444444444333211111 11223467778888888888766554 4444545554432 222
Q ss_pred HHHHHHhcCChhHHHHHH
Q 014502 327 IIRLYALSDRLDDVEYSV 344 (423)
Q Consensus 327 li~~~~~~g~~~~a~~~~ 344 (423)
=-..|....++.++..-+
T Consensus 171 ESKvyh~irnv~KskaSL 188 (421)
T COG5159 171 ESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hHHHHHHHHhhhhhhhHH
Confidence 223444444444444333
No 414
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.57 E-value=3.2e+02 Score=28.34 Aligned_cols=58 Identities=7% Similarity=-0.121 Sum_probs=29.8
Q ss_pred CChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHH
Q 014502 355 KSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
.+|..+|.++..|++..+.+....+......+-. ...-....++.|.+.+...-+..+
T Consensus 626 ~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l 683 (911)
T KOG2034|consen 626 TNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFL 683 (911)
T ss_pred cCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeH
Confidence 3588888888888887666543333322221111 122223455566655554433333
No 415
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.11 E-value=2.6e+02 Score=27.25 Aligned_cols=85 Identities=7% Similarity=0.003 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHHHHHHhc
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS------------VNVQTYESLIHGSLKA 227 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------~~~~~~~~li~~~~~~ 227 (423)
++..+.+.+..+..|+..+......++... .|++..+...++.+...+-. +.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 344444544433356655555555554433 36666666666665443211 1122233344444 44
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 014502 228 RDFDSVDRFYEEMMSLGIIP 247 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p 247 (423)
++.++|+.+++++...|..|
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 77888888888887777444
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.90 E-value=1e+02 Score=22.52 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88999999999999999999998877
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.89 E-value=94 Score=30.35 Aligned_cols=102 Identities=15% Similarity=-0.018 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
.|+...|.+.+.........-..+....|.....+.|...+|..++.+..... .....+ +-.+-.+|....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~--~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLT--FLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchH--HHhcchhHHHHhhhHHHH
Confidence 46777777777766543211122233445566667777888888887776644 333444 667788888899999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502 342 YSVGRMGKQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 342 ~~~~~m~~~~~~~~~~~~~~~l~~~~~ 368 (423)
+-|++..+ ..|+++..-+.|...-|
T Consensus 697 ~~~~~a~~--~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALK--LTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHh--cCCCChhhHHHHHHHHH
Confidence 99998877 44556777666654443
No 418
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.80 E-value=2.7e+02 Score=27.21 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcCC
Q 014502 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------------SVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 163 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~~g~ 229 (423)
.+.+....+..|+..+......++... .|++..|..++++....|- .++......+++++. .|+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCC
Confidence 333333333255555555555444332 4666666666665543320 112223333444443 377
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 014502 230 FDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~ 248 (423)
.+.+++++++|...|..|.
T Consensus 261 ~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 7777777777777776554
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.48 E-value=1.2e+02 Score=22.98 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014502 126 FAMHVFTSMEAQGIKP-DSAVFNSLICACLCSGDVVTALSLFEI 168 (423)
Q Consensus 126 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 168 (423)
.+.++|..|...|+-. -+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888776643 455777777888888888888888764
No 420
>PRK09857 putative transposase; Provisional
Probab=48.14 E-value=1.8e+02 Score=25.92 Aligned_cols=16 Identities=0% Similarity=-0.045 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhCCCC
Q 014502 301 DELEEQLETLTKCNQS 316 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~ 316 (423)
+++.++..+|...|..
T Consensus 257 e~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 257 SKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3344444444444443
No 421
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.92 E-value=2.6e+02 Score=26.88 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=62.0
Q ss_pred CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhc---cccchHHHHHHHHhCCCcccHHH
Q 014502 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC---AAYDRLDLFLDHIKGSYKLRRAT 393 (423)
Q Consensus 317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 393 (423)
|+..+. -+..++.+.+.|-..+|..++..+.. .+|.+...|.-++..-... |....-+.|..+.. .+..|+..
T Consensus 457 ~~~~tl-~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~-~fg~d~~l 532 (568)
T KOG2396|consen 457 ADSVTL-KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR-EFGADSDL 532 (568)
T ss_pred Cceeeh-hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH-HhCCChHH
Confidence 444432 56778888888999999999999877 5566677777776543332 21123444444443 23477777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 014502 394 YDFLVAGYRRAGLSGKLDSVINE 416 (423)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~ 416 (423)
|.-.+.--...|..+.+-.++..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHH
Confidence 77777776778887776665543
No 422
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.92 E-value=1.3e+02 Score=26.79 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE 296 (423)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 296 (423)
.++++.|.+.++.|.-++|..+.-.+.+.=.+..+..+|+.+.... .-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHH
Confidence 4577777788888888887777777777777788888888877632 225555555553
No 423
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.65 E-value=57 Score=21.30 Aligned_cols=47 Identities=4% Similarity=0.106 Sum_probs=19.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
|....++.++...++-.-++.++..+.+..+.|. .+..+|-.-++.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3334444444444444444444444444444442 2334443333333
No 424
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.63 E-value=2.8e+02 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
..++.-|.+.+++++|..++..|. .+..+.. .+.+.+.+.+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn--W~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN--WNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--ccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346667888888888888888875 2222111 23344455555555445555555555543
No 425
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.87 E-value=3.7e+02 Score=28.23 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHccCCH--HHHHHHHHHHHhcCCCCCCHHhHH
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQG--IKP-DSAVFNSLICACLCSGDV--VTALSLFEIMVSSEEYKPNSKTYD 183 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~p~~~~~~ 183 (423)
.-|..|+..|...|+.++|+++|.+..... ..+ -..-+..+++-+.+.+.. +.++++-....+. ........+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift 583 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFT 583 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeee
Confidence 347888999999999999999998887631 000 112233355544444443 4444443333321 0000000111
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 184 ------------AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (423)
Q Consensus 184 ------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 226 (423)
.-+-.|.+....+-+..+++.+....-.++..-.+.++..|++
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223455666677777888877766556677777777777764
No 426
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=46.87 E-value=1.5e+02 Score=23.91 Aligned_cols=73 Identities=11% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
...++..+.+.|...|...-...+..-.+.| ..-.++..++...|+.++.. ...+..+......+.|..++.+
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi~~~~I----e~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGIDDEII----EEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCCCHHHH----HHHHhccchHHHHHHHHHHHHH
Confidence 3444455555555545444444444444444 22345555666666443332 2333334444444444444443
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.52 E-value=43 Score=21.89 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (423)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (423)
|+...++-++..+++..-.++++..+.+....|. .+..+|.--+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666553 445555555554443
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.52 E-value=1.9e+02 Score=28.77 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCC--HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESC--LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
..||..-+.++..++..+.+.|+.-+.-.......+ ......|--+|....++|.|.+++++..+...+ ++.+---+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHH
Confidence 345554444677788888888643222222111122 233566667778889999999999999886321 44444556
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 014502 150 ICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~ 171 (423)
..+.+..|.-++|+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHh
Confidence 6677788888999888776654
No 429
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.32 E-value=42 Score=17.28 Aligned_cols=28 Identities=14% Similarity=-0.123 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 335 g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
|+.+.|..+|+++.... |.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHH
Confidence 34566666666666532 23455554443
No 430
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.04 E-value=3.3e+02 Score=27.41 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=14.4
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHh
Q 014502 324 FSGIIRLYAL---SDRLDDVEYSVGRMGK 349 (423)
Q Consensus 324 ~~~li~~~~~---~g~~~~a~~~~~~m~~ 349 (423)
+..||..|.+ ..++.+|.+.+--+..
T Consensus 327 ~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 327 FARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5566666654 3455666666655544
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.88 E-value=4.2e+02 Score=28.65 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQ--SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
.|...++.+-+.+..+.+.++-...++.-. .|... .+++.+.+.....|.+-+|...+-+-...... -+...-+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a-~~~t~vFnhhldlgh~~qAy~ai~~npdserr---rdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVA-LISTTVFNHHLDLGHWFQAYKAILRNPDSERR---RDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHH-HHHHHHHHhhhchhhHHHHHHHHHcCCcHHHH---HHHHHHH
Confidence 455666666666666666666655554211 12221 12566666666666666665544332221111 3444555
Q ss_pred HHHHhhccccc
Q 014502 364 ICSYFRCAAYD 374 (423)
Q Consensus 364 ~~~~~~~~~~~ 374 (423)
+..+..+|.++
T Consensus 1061 vivLfecg~l~ 1071 (1480)
T KOG4521|consen 1061 VIVLFECGELE 1071 (1480)
T ss_pred HHHHHhccchH
Confidence 55555555544
No 432
>PRK10941 hypothetical protein; Provisional
Probab=45.03 E-value=2.2e+02 Score=25.05 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=32.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
.+-.+|.+.++++.|+++.+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 444556666666666666666654 1233 333443444566666666666666655543
No 433
>PHA02989 ankyrin repeat protein; Provisional
Probab=44.88 E-value=3e+02 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=11.0
Q ss_pred HHHHHHhhhccCCcChh
Q 014502 56 KTTLDSVDIFAFNSSQF 72 (423)
Q Consensus 56 ~~~~~~m~~~g~~p~~~ 72 (423)
.++.+.+.+.|..++..
T Consensus 16 ~~~v~~LL~~GadvN~~ 32 (494)
T PHA02989 16 KNALEFLLRTGFDVNEE 32 (494)
T ss_pred HHHHHHHHHcCCCcccc
Confidence 45566666677777754
No 434
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.31 E-value=77 Score=19.68 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=9.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014502 293 CYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~ 312 (423)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555554
No 435
>PRK10941 hypothetical protein; Provisional
Probab=44.29 E-value=2.2e+02 Score=24.97 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+.+-.+|.+.++++.|.++.+.+.. +.|+.... +.----.|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e-~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYE-IRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34455556666666666666666665 33544322 22233346666666666666666554
No 436
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=44.03 E-value=2.7e+02 Score=25.86 Aligned_cols=27 Identities=4% Similarity=-0.111 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 393 TYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
-|+.++......+.+=.+-+.++..-+
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhc
Confidence 355666665566666666555555443
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.99 E-value=1.3e+02 Score=24.11 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
+.-.|.++++.+.+.+..++..|....+..+...|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344444444444443334333333333343333
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.98 E-value=2.7e+02 Score=25.90 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=38.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQ--TYESLIHGSL--KARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 243 (423)
.-+.+.+++..|.++++++... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998886 454444 3444445553 456778888888877654
No 439
>PHA02989 ankyrin repeat protein; Provisional
Probab=43.43 E-value=3.1e+02 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=5.6
Q ss_pred HHHHHHhCCCccC
Q 014502 271 FLKFLLGGGWKIN 283 (423)
Q Consensus 271 ~~~~~~~~g~~~~ 283 (423)
+.+.+.+.|..++
T Consensus 200 iv~~Ll~~Ga~vn 212 (494)
T PHA02989 200 VIKYLIKKGVNIE 212 (494)
T ss_pred HHHHHHhCCCCcc
Confidence 3344444454433
No 440
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.39 E-value=3.4e+02 Score=26.85 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=73.4
Q ss_pred HhcCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 118 SGKVQNVPFAMHVFTSMEA-------QGIKPDSAVFNSLICACLCSG-----DVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
++..++++.|...|+...+ .| .+...+-+..+|.+.. +.+.|+.++.+.-. .| .|+...+-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHH
Confidence 3355677777777777765 44 2334555555555532 45557777766655 33 2333322111
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 186 ISGFSS-LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS--LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 186 i~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (423)
+..... ..+...|.++|...-+.|.. ...-+-.++-.. .-..+.+.|...+.+..+.| .|-..--...+..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 111111 23456677777776666632 222221111111 12345666666666666665 2322222222233333
Q ss_pred CCHHHHHHHHHHHHhCC
Q 014502 263 RKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~g 279 (423)
+.++.+...+..+...|
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 55555555555555544
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.36 E-value=2.9e+02 Score=26.14 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=38.3
Q ss_pred HHHHHHHhhcccc-chHHHHHHHHhCCCc--ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502 361 EMVICSYFRCAAY-DRLDLFLDHIKGSYK--LRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM 423 (423)
Q Consensus 361 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 423 (423)
..|+.-|...|+. |+..-+.+. |++ -....+.+++.+.-+.|+....+.++++--..|++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 3566667667766 333333222 221 13456888888888888888888888877777654
No 442
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.66 E-value=4e+02 Score=27.45 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCc
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-----LDRVKSFLKFLLGGGWK 281 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~g~~ 281 (423)
+.++++.|+..+.+|.+.|..|....-..++.+.-..|. ...|...+.-....|++
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 346777777777777777765544333333333323332 22233444444455553
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.51 E-value=3e+02 Score=25.95 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 014502 228 RDFDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~ 248 (423)
++.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666666655554
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.47 E-value=1.8e+02 Score=29.03 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=19.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCC
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQG--IKPDSAVFNSLICACLCSGD 158 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~ 158 (423)
+|+.+|...|++-++.++++...... -+.=...||..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 44445555555555555444444321 11122344444444444443
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.96 E-value=71 Score=23.46 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=24.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (423)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (423)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 334444445555666666666665555555555555555555543
No 446
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=41.92 E-value=74 Score=23.56 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (423)
|++++....+-++.. |...|...+...+.++..
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~ 94 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLD 94 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 555555444433333 444455555555554443
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.26 E-value=3e+02 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=37.5
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc--cCCHHHHHHHHHHHHh
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIKPDSA--VFNSLICACLC--SGDVVTALSLFEIMVS 171 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 171 (423)
.+...+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444778888888888888886 555544 45555555543 5677888888887765
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.13 E-value=1.2e+02 Score=21.10 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
++|+-....|+..|..+|..+++.+.-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444555555555554444433333333333333333
No 449
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.19 E-value=1e+02 Score=19.88 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEMM 241 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~ 241 (423)
.+.|++-+|-++++++-
T Consensus 10 ~n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELW 26 (62)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HcCCCHHHhHHHHHHHH
Confidence 34555555555555554
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.13 E-value=2.5e+02 Score=24.44 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~ 237 (423)
|...+..+...|.+.|++.+|..-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666777778888888888777655
No 451
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=39.88 E-value=88 Score=22.80 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
++|.+.+.+++...|+.| |+..--++...+..-..+..+.. -...|++.|..||. |+++.....+-
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~----~~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADI----KLDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcccc----CCCCCeEEEeeeec---------CchHHHHHHHH
Confidence 456667777776667776 44443333333322221111000 00122233333332 66665555443
Q ss_pred HHH--HCCCCCCHHHHHHHHHHHHhc
Q 014502 239 EMM--SLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 239 ~m~--~~~~~p~~~~~~~li~~~~~~ 262 (423)
+.. ..+...|...+...+.++...
T Consensus 72 kq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 72 KQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 322 445566666666665555443
No 452
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=39.86 E-value=4e+02 Score=26.68 Aligned_cols=67 Identities=6% Similarity=0.069 Sum_probs=39.7
Q ss_pred cCCcCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 014502 66 AFNSSQ-FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ 137 (423)
Q Consensus 66 g~~p~~-~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 137 (423)
.+.++. ..|..|+..++.-+.++-.++ ++++.... .....+..++++....|--+.+.-+.+.+...
T Consensus 340 ~~~~~~~~~f~~Lv~~lr~l~~~~L~~l----~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~ 407 (618)
T PF01347_consen 340 PVSKETLSKFSRLVRLLRTLSYEDLEEL----YKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSK 407 (618)
T ss_dssp S--TTHHHHHHHHHHHHTTS-HHHHHHH----HHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 334443 357777777888888887777 44443222 35667788888888887776666666666554
No 453
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.73 E-value=1.3e+02 Score=21.11 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=13.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 014502 327 IIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 327 li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556666666666666554
No 454
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.72 E-value=3.7e+02 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m 240 (423)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4555666777777777766665
No 455
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.68 E-value=3.6e+02 Score=26.08 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 206 (423)
+..+.++...+..|+..+......+... ..|++..|+.++++..
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 3444455444435666666665544432 3477777777777654
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.15 E-value=5.4e+02 Score=27.94 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH----hHH
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLG--IIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN----MAQ 288 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~ 288 (423)
-|-.+++.+-+.+-.|.+.++-....+.- -.|. ..+++++.+.....|.+-+|...+-. .||.. ...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 35555666666666666666555544421 0122 23455666666666666665544321 13322 334
Q ss_pred HHHHHHHhcCCHH
Q 014502 289 KLVKCYCELGRVD 301 (423)
Q Consensus 289 ~li~~~~~~g~~~ 301 (423)
.++-.++.+|.++
T Consensus 1059 qlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1059 QLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhccchH
Confidence 4555555555543
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.87 E-value=1.9e+02 Score=23.24 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (423)
.++.-.|.++++.+.+.+..++..|....|..+...
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 333444444444444444444444333333333333
No 458
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.86 E-value=3.8e+02 Score=26.15 Aligned_cols=85 Identities=9% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------C----------CCCHHHHHHHHHHH
Q 014502 161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG------F----------SVNVQTYESLIHGS 224 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~----------~~~~~~~~~li~~~ 224 (423)
+..+.++...+..|+..+......+... ..|++..|...++++...+ + ..+....-.++++.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444444335555555555544442 3466666666666653321 1 11222223344443
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~ 248 (423)
. .|+.++|+.+++++...|..|.
T Consensus 269 ~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 269 I-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3 3777777777777777775543
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.35 E-value=1.7e+02 Score=22.05 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
++.++|+.|..+++-...... |......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~f-Y~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALF-YEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHH-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHH-HHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777777665444333 77777777777777777777764
No 460
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.07 E-value=4.6e+02 Score=26.87 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 115 IALSGKVQNVPFAMHVFTSMEAQGIKP---DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
++.+.+.+.+++|.+.-+.... ..| -...+...|..+.-.|++++|-...-.|.. -+..-|.--+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcc
Confidence 4455555566666655544332 222 233455566666666666666666555543 233444444444444
Q ss_pred cCCH
Q 014502 192 LGNV 195 (423)
Q Consensus 192 ~~~~ 195 (423)
.++.
T Consensus 436 ~~~l 439 (846)
T KOG2066|consen 436 LDQL 439 (846)
T ss_pred cccc
Confidence 4443
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.93 E-value=2.6e+02 Score=24.03 Aligned_cols=62 Identities=19% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc---CC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSS---EE-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 206 (423)
.--.+..-|.+.|++++|.++|+.+... .| ..+...+...+..++.+.|+.+..+.+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345666788888888888888877421 22 34556677778888888888888777665553
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.85 E-value=1.6e+02 Score=21.58 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
..++|..+.+.+...+-. ...+--+-+..+.+.|+|++|+.. ......||...|-++- -.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345555555555544321 122222223345555555555111 1112244444444332 234555555555555
Q ss_pred HHHhCC
Q 014502 274 FLLGGG 279 (423)
Q Consensus 274 ~~~~~g 279 (423)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554444
No 463
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.55 E-value=1.3e+02 Score=20.22 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 155 (423)
+.+.|..++..++... +.++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 3455666666655432 3366667776665544
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.07 E-value=2.4e+02 Score=25.25 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 014502 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----------RRKLDRV 268 (423)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 268 (423)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.... .-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4677888888888888887777777777777888888888876532 225555555543 4777776
Q ss_pred HHHHH
Q 014502 269 KSFLK 273 (423)
Q Consensus 269 ~~~~~ 273 (423)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66654
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.96 E-value=2.6e+02 Score=23.71 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT 216 (423)
Q Consensus 139 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 216 (423)
+.++..-+|.||--|.-...+.+|-+.|..-..-.. +.++...=..-|....+.|++++|++...++--.-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHH
Q 014502 217 YESLIH----GSLKARDFDSVDRFYEE 239 (423)
Q Consensus 217 ~~~li~----~~~~~g~~~~a~~~~~~ 239 (423)
+-.|.. -..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
No 466
>PRK09857 putative transposase; Provisional
Probab=36.68 E-value=2.9e+02 Score=24.63 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 014502 290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 353 (423)
++....+.++.++-.++++.+.+.. ...... ...+..-+.+.|.-+++.++.++|...|+.
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~--iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERS-PKHKES--LMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhC-ccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333334455444455555444431 111111 234455555556556677777777777775
No 467
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.08 E-value=5e+02 Score=26.66 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=83.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCC---CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++.+.+++|++. .+. ..+..| -.......|..+.-.|++++|-...-.|... +..-|.--+..+...+
T Consensus 367 l~~k~yeeAl~~----~k~-~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 367 LEKKKYEEALDA----AKA-SIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHhhHHHHHHHH----HHh-ccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 466777777777 232 223333 3566788888888999999999888888765 6667777777666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH---HHH------CCC-------CCCHHHHHHHH
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA---NIA------AGF-------SVNVQTYESLI 221 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~---m~~------~~~-------~~~~~~~~~li 221 (423)
+...... -+.. ..-.-+...|..++..+.. .+...-.++..+ +.- ... .-+...-..|.
T Consensus 438 ~l~~Ia~---~lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 438 QLTDIAP---YLPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred ccchhhc---cCCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 6544322 2332 1112244566666666655 222211111111 000 000 11222333477
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 014502 222 HGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~ 241 (423)
.-|...+++++|++++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77888888888887775554
No 468
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.07 E-value=5.2e+02 Score=26.86 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------------SVNVQTYESLIHGSL 225 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~ 225 (423)
.++..+.+++..+..|+.-+......+... ..|++..|+.++++....+- ..+......+++.+.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555554435555555555444433 35667777776665443210 112222333333332
Q ss_pred hcCCHHHHHHHHHHHHHCCC
Q 014502 226 KARDFDSVDRFYEEMMSLGI 245 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~ 245 (423)
.|+..+++.+++++...|.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSL 276 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCC
Confidence 2556666666666655554
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.56 E-value=93 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
.+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 13 ~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 13 SDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33334444555555444444444444444444444443
No 470
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.43 E-value=3e+02 Score=23.96 Aligned_cols=68 Identities=7% Similarity=-0.036 Sum_probs=30.4
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHH-HHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHhcCChhHHHHHH
Q 014502 277 GGGWKINENMAQKLVKCYCELGRVD-ELEEQLETLT---KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV 344 (423)
Q Consensus 277 ~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~---~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~ 344 (423)
+.+.++|......++..+...+.-+ +-.++.+.+. +.+..|.-...++..+...|.+.|++.+|+.-|
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444555544444554444433211 1122222222 333334444444777888888888888877655
No 471
>COG0819 TenA Putative transcription activator [Transcription]
Probab=35.22 E-value=2.8e+02 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=12.4
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 207 AAGFSVNVQTYESLIHGSLKARDFDS 232 (423)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~g~~~~ 232 (423)
+....|....|+..|...+..|++.+
T Consensus 102 ~~~~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 102 KTEPSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred hcCCCchHHHHHHHHHHHHhcCCHHH
Confidence 33344445555555555555554433
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.00 E-value=3.3e+02 Score=24.22 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 231 DSVDRFYEEMMSLG--------IIPSIPILEKVLEGLCARRKLDRV-KSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 231 ~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
....-+|.-+.+.| ++.|..-++.++.- +..++++. .++-+.=...|-.-....+..+.+.|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCChHhHHHH--HHHHhhccccchH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR---LDDVEYSVGRMGKQGLSFKSAEDVEMV--ICSYFRCAAYDRL 376 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~ 376 (423)
.+.+...+..+..........++-..+..-.--|+ +++.++..+.|.+.|-.-..-+-|... |......+-.+|+
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHhcC
Q 014502 377 DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405 (423)
Q Consensus 377 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 405 (423)
.++.+.+..=-.....+|...+.-..-.|
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHhh
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.58 E-value=2.9e+02 Score=26.12 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH---
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV--- 300 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--- 300 (423)
+...|++.+|+..|+.+. +...+.......+.+++.+++....+ |..-+..=...+.+
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE---------Yilgl~iEl~Rr~l~~~ 274 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE---------YILGLSIELERRELPKD 274 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHCTS-TT
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcccc
Q ss_pred -----HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502 301 -----DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA 371 (423)
Q Consensus 301 -----~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 371 (423)
+...++--.+...++.|.....+...-|..+.+.+++..|-.+-+++.+.+-.+.-..--..++..+-+..
T Consensus 275 ~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~ 350 (422)
T PF06957_consen 275 PVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNP 350 (422)
T ss_dssp THHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS-
T ss_pred chhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.55 E-value=3.4e+02 Score=25.54 Aligned_cols=99 Identities=10% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEE-----MMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLKFL----- 275 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~----- 275 (423)
+...--.++.++....++.+.++..+. ....+..... .+...+++..+-.||+..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred --HhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 276 --LGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 276 --~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (423)
...-..-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=34.47 E-value=4.5e+02 Score=25.72 Aligned_cols=208 Identities=14% Similarity=0.039 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF--SVNVQTYESLI 221 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li 221 (423)
..+.-.+.+++..+...+++.+.++... .|. .|-.+...+...+....|..++-+-.+.+- .-++.....+.
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~----~~~--~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~ 377 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAE----GPG--SYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLA 377 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhc----Ccc--cHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHH
Confidence 3566777888888888888888887765 233 577788888888888887776654443321 12455666778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHH------------HHhC-C-CccC-H
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL--EGLCARRKLDRVKSFLKF------------LLGG-G-WKIN-E 284 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~------------~~~~-g-~~~~-~ 284 (423)
..+...|+.-.|.++-+..-.. .|+...|--+= ..+...|+.+....+... |... | ..|+ .
T Consensus 378 el~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~~~~~~p~~~~~~~l~~~g~~~p~d~ 455 (587)
T COG4715 378 ELKEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREEREAALAYLEVGESPFAIWPGALPLTGLLWPADR 455 (587)
T ss_pred HHHHhhcchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHHHHHHHHHhccCchhhhhhhhhhcccCCcchh
Confidence 8888888888888876655443 35544444332 233344444433332222 1111 1 1122 1
Q ss_pred H-----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH---HHHhcCChhHHHHHHHHHHhCCCCCCC
Q 014502 285 N-----MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR---LYALSDRLDDVEYSVGRMGKQGLSFKS 356 (423)
Q Consensus 285 ~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~~~~ 356 (423)
. ....++..+........+.+.+.+....+..--... +.++++ .-.....++-|..++++.-+.-+...+
T Consensus 456 ~~li~~~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~--~~i~~n~i~~A~~~~~peia~~~~~r~Ae~li~~t~ 533 (587)
T COG4715 456 RTLITRLLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYA--LHIVENKIVNAVPEKYPEIALLIWKRVAERLISETK 533 (587)
T ss_pred hhHhhhhHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhH--HhHHHHHHHhhhhccCchHHHHHHHHHHHHHHhhhh
Confidence 1 223344455555555555555555444333222221 222222 122334466677776666554333333
Q ss_pred hHhHH
Q 014502 357 AEDVE 361 (423)
Q Consensus 357 ~~~~~ 361 (423)
..+|.
T Consensus 534 ~~~Y~ 538 (587)
T COG4715 534 VRAYA 538 (587)
T ss_pred hhHHH
Confidence 44443
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.42 E-value=3.9e+02 Score=25.01 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAG--FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243 (423)
Q Consensus 180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 243 (423)
..+.-+...|..+|+++.|++.|.+.+..- ..-....|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 467788888999999999999998865431 1223445666666677788999888888877653
No 477
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.41 E-value=2.9e+02 Score=23.46 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=48.5
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 197 (423)
+...+++++|.+.+-.- .+.|+ .-.-++.++...|+.+.|+.+++.+.- ...+......++.. ..++.+.+
T Consensus 88 ~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~E 158 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTE 158 (226)
T ss_pred HhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHH
Confidence 34556666666666221 11222 122466666667777777777766542 11122222333333 55577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 226 (423)
|+.+-+...+.. ....+..++..+..
T Consensus 159 Af~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 159 AFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 776655544311 13345555555553
No 478
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=4.7e+02 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
|-.+++++...++.+.|.++++++.+.+
T Consensus 211 yf~v~k~vv~LnDa~~a~~L~~kL~~en 238 (926)
T COG5116 211 YFYVIKAVVYLNDAEKAKALIEKLVKEN 238 (926)
T ss_pred EEEEeEEEEEeccHHHHHHHHHHHHhhh
Confidence 4445666666777777777777776643
No 479
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.95 E-value=2.8e+02 Score=23.07 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI-LEKVLEGLCARR 263 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g 263 (423)
...+.++..|.-.|+++.|-+.|--+.... ..|... |..=+..+.+.+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~ 90 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRG 90 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCC
Confidence 456677888888888888888888877643 344432 333333333333
No 480
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.93 E-value=68 Score=23.84 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=20.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++..+...+..-.|.++++.+.+.|...+..|.-.-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444555555555555555555444444444444444
No 481
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.91 E-value=85 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPI 251 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (423)
+...+..-.|.++++.+.+.+...+..|
T Consensus 17 l~~~~~~~ta~ei~~~l~~~~~~is~~T 44 (120)
T PF01475_consen 17 LKESPEHLTAEEIYDKLRKKGPRISLAT 44 (120)
T ss_dssp HHHHSSSEEHHHHHHHHHHTTTT--HHH
T ss_pred HHcCCCCCCHHHHHHHhhhccCCcCHHH
Confidence 3333333344444444444443333333
No 482
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.26 E-value=1.6e+02 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=17.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCC
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQG 138 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g 138 (423)
++++.+.++...++|+++.+.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35566666777777777777777766
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.83 E-value=2.8e+02 Score=22.88 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=9.7
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014502 296 ELGRVDELEEQLETLTK 312 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~ 312 (423)
+.|+++.|++.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44566666666655544
No 484
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.48 E-value=5.3e+02 Score=25.94 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHh
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------------SVNVQTYESLIHGSLK 226 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~li~~~~~ 226 (423)
++..+.+.+.....|+..+......++.. ..|++..++.++++....+- ..+......+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 33444444433335666666555555542 34667666666665443321 1122333344444443
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 014502 227 ARDFDSVDRFYEEMMSLGIIP 247 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p 247 (423)
|+...++++++++.+.|..|
T Consensus 264 -~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCH
Confidence 67777888888877777554
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.44 E-value=4.1e+02 Score=24.56 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=79.3
Q ss_pred hCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhcCCCCCC
Q 014502 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL---CSGDVVTALSLFEIMVSSEEYKPN 178 (423)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~ 178 (423)
+..+-.+.++-.+-..+...|+.+.|.+++++..-. =..++......+. ..|.. ++ . ....-|
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~--------rL-~-~~~~eN 99 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNC--------RL-D-YRRPEN 99 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCcc--------cc-C-Cccccc
Confidence 344557888888888899999988888888876532 0001111110000 00100 00 0 122334
Q ss_pred HHhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 014502 179 SKTYDAF---ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL-KARDFDSVDRFYEEMMS 242 (423)
Q Consensus 179 ~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 242 (423)
..-|-++ |..+.+.|.+..|.++.+-+...+..-|......+|+.|+ +.++++--+++++....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4445444 4677888999999999999988876657777777787764 67888888888877654
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.12 E-value=2e+02 Score=20.80 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhH
Q 014502 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182 (423)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 182 (423)
....++.+++....+....+-....+--.|.+.|+.+.|.+-|+.=+. ..|.+.+|
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa---lFPES~~f 108 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA---LFPESGVF 108 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh---hCccchhH
Confidence 333444555555544333333334455556666666666666665543 34555554
No 487
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.82 E-value=3.9e+02 Score=24.14 Aligned_cols=143 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCC------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQN------------VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 164 (423)
+++..+..+-|+.+|-.++..--+.-. .+.-+.++++..+. -+-+...+-.++..+.+..+.++..+
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHH
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHC--CCCCCH---------------HHHHHHHHHH
Q 014502 165 LFEIMVSSEEYKPNSKTYDAFISGFSS---LGNVDAMNKWYAANIAA--GFSVNV---------------QTYESLIHGS 224 (423)
Q Consensus 165 ~~~~m~~~~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~--~~~~~~---------------~~~~~li~~~ 224 (423)
-++++.. ..+-+...|...|..... .-.++.+..+|.+.... +..-+. ..+..+...+
T Consensus 87 ~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 87 KWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~ 242 (423)
..+|..+.|+.+++-+.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLE 182 (321)
T ss_pred HHCCchHHHHHHHHHHHH
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.76 E-value=5.8e+02 Score=26.18 Aligned_cols=119 Identities=9% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhc
Q 014502 161 TALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ----------TYESLIHGSLKA 227 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----------~~~~li~~~~~~ 227 (423)
+--.++.+|++ .--.|++ .+...++-.|-...+++..+++.+.++.. ||.. .|.-.++---+-
T Consensus 181 ~l~~~L~~mR~-RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 181 QLNDYLDKMRT-RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHh-hcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 34456677776 2223443 34455556666677778888888877753 3321 122223333345
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHHhcCCHHHHHHHHHHHHhCCCccCHH
Q 014502 228 RDFDSVDRFYEEMMSL--GIIPSIPI-----LEKV--LEGLCARRKLDRVKSFLKFLLGGGWKINEN 285 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~--~~~p~~~~-----~~~l--i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 285 (423)
|+-++|+.+.-.|.+. .+.||... |.-+ -+.|...+..+.|.++|++.-+ ..|...
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 7777787776666542 35566532 2211 1223445566778888887765 345443
No 489
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.23 E-value=4.2e+02 Score=24.39 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 289 KLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~ 310 (423)
.++..|...|-.+.|...|..+
T Consensus 222 lLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 222 LLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc
Confidence 3444444444444444444443
No 490
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.21 E-value=2.5e+02 Score=21.73 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 014502 292 KCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~ 312 (423)
-++.+.++++.+.++.+.+.+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 345555555555555555544
No 491
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=31.17 E-value=52 Score=21.35 Aligned_cols=14 Identities=36% Similarity=0.299 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHh
Q 014502 158 DVVTALSLFEIMVS 171 (423)
Q Consensus 158 ~~~~A~~~~~~m~~ 171 (423)
+++.|...|.++..
T Consensus 40 d~~~Al~~F~~lk~ 53 (63)
T smart00804 40 DYERALKNFTELKS 53 (63)
T ss_pred CHHHHHHHHHHHHh
Confidence 44445555544444
No 492
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.52 E-value=2.6e+02 Score=21.67 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
-++.+.++++.+.++.+.+.+.
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555666666555555544
No 493
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=30.44 E-value=2.3e+02 Score=21.05 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
.+..+++.+.+.|+-.|......++....+.+.. ....+-.++..+|+.+
T Consensus 10 ~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~ 59 (121)
T PF02631_consen 10 AIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDR 59 (121)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCCh
Confidence 3444555555555544444444444444432221 1234444555555443
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.13 E-value=1.9e+02 Score=20.15 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
++|+-....|+..|+..|..++..+..+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555556666666666666655555555555566655553
No 495
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.04 E-value=6.7e+02 Score=26.35 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 206 (423)
++..+++.+..+..|+..+...+..++... .|++..++..++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 344444444443355555555555444433 356666666666654
No 496
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=29.99 E-value=3e+02 Score=23.67 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
+.|..+++.-... ..+..+-..+--++...|+...+.++++.+.
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3444444443211 2244444444445555556666666666554
No 497
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.39 E-value=2.5e+02 Score=21.23 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
++..++|..|..+++-...... |......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~Alf-Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALF-YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 3356677777776664444332 6666666777777777777764
No 498
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.22 E-value=6.7e+02 Score=26.09 Aligned_cols=84 Identities=6% Similarity=0.056 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHh
Q 014502 196 DAMNKWYAANIA-AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---I----------IPSIPILEKVLEGLCA 261 (423)
Q Consensus 196 ~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~----------~p~~~~~~~li~~~~~ 261 (423)
++..+.+++..+ .|+..+......+.. ...|+..+|+.++++....+ + .+|...+..+++++ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 455556655443 466556655554443 33578888888776654321 0 23333344444443 3
Q ss_pred cCCHHHHHHHHHHHHhCCCcc
Q 014502 262 RRKLDRVKSFLKFLLGGGWKI 282 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~~ 282 (423)
.++...++.+++++...|..+
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 477777777777777777644
No 499
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.02 E-value=2.3e+02 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 288 QKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
..++..|...+++++|.+-+.++..
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCC
Confidence 3456667777777777777776643
No 500
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.98 E-value=2.3e+02 Score=20.59 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.++..|...+++++|.+-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 45556666667777766666654
Done!