Query 014502
Match_columns 423
No_of_seqs 489 out of 3107
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 12:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.8E-34 6E-39 272.9 25.4 200 97-297 13-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.2E-34 1.8E-38 269.7 25.5 207 125-334 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 7.2E-32 2.5E-36 264.0 37.4 370 35-419 82-544 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.4E-31 4.9E-36 261.9 34.6 371 34-420 147-579 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9.1E-25 3.1E-29 202.1 42.4 353 48-419 10-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-23 1.3E-27 191.3 42.3 355 35-406 30-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.1E-22 2.1E-26 186.7 37.4 312 70-398 25-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 184.8 34.8 312 97-420 15-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.8E-21 1.3E-25 184.3 35.1 360 45-420 14-478 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.8E-23 158.8 37.6 317 71-403 3-352 (359)
11 2gw1_A Mitochondrial precursor 99.9 1.2E-19 4E-24 173.9 32.1 323 81-419 17-443 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.5E-18 5E-23 158.0 36.5 303 107-420 2-335 (359)
13 3hym_B Cell division cycle pro 99.9 7.9E-19 2.7E-23 158.0 32.2 293 69-375 20-323 (330)
14 3hym_B Cell division cycle pro 99.9 1.6E-18 5.3E-23 156.0 31.5 294 104-408 18-322 (330)
15 3fp2_A TPR repeat-containing p 99.9 1.1E-18 3.6E-23 168.2 32.1 359 43-419 31-490 (537)
16 3spa_A Mtrpol, DNA-directed RN 99.8 9.9E-21 3.4E-25 184.5 11.5 152 142-298 126-286 (1134)
17 3fp2_A TPR repeat-containing p 99.8 1.8E-17 6.2E-22 159.6 32.5 335 71-419 25-456 (537)
18 3spa_A Mtrpol, DNA-directed RN 99.8 2.5E-20 8.6E-25 181.7 10.4 120 178-297 126-249 (1134)
19 1fch_A Peroxisomal targeting s 99.8 3.5E-18 1.2E-22 156.4 24.1 278 109-415 65-354 (368)
20 1fch_A Peroxisomal targeting s 99.8 6.2E-18 2.1E-22 154.7 24.3 274 70-375 63-348 (368)
21 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.7E-22 152.4 26.1 229 74-312 68-309 (365)
22 4eqf_A PEX5-related protein; a 99.8 2E-17 7E-22 151.3 23.3 277 107-415 64-351 (365)
23 3cv0_A Peroxisome targeting si 99.8 9.8E-17 3.4E-21 144.0 27.0 265 71-347 21-312 (327)
24 1b89_A Protein (clathrin heavy 99.8 6.6E-18 2.2E-22 153.0 16.6 282 82-414 15-305 (449)
25 3mkr_A Coatomer subunit epsilo 99.8 1.7E-16 5.7E-21 140.2 24.1 223 110-349 36-263 (291)
26 3cv0_A Peroxisome targeting si 99.8 1.5E-16 5.2E-21 142.8 24.3 277 107-416 20-311 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 8.8E-16 3E-20 135.5 27.5 274 115-413 6-287 (291)
28 2xm6_A Protein corresponding t 99.7 9.3E-13 3.2E-17 125.3 46.0 331 54-421 61-433 (490)
29 2ooe_A Cleavage stimulation fa 99.7 7.2E-14 2.5E-18 134.4 38.5 368 36-419 12-491 (530)
30 2xm6_A Protein corresponding t 99.7 1.2E-12 4.2E-17 124.5 46.1 318 70-421 38-397 (490)
31 1b89_A Protein (clathrin heavy 99.7 6.7E-16 2.3E-20 139.9 18.9 276 52-377 19-303 (449)
32 3uq3_A Heat shock protein STI1 99.7 6.7E-15 2.3E-19 127.2 23.1 225 109-349 6-235 (258)
33 4g1t_A Interferon-induced prot 99.7 2.1E-13 7.1E-18 129.1 32.1 343 70-421 50-460 (472)
34 3u4t_A TPR repeat-containing p 99.7 3.8E-14 1.3E-18 123.7 24.7 253 108-367 3-265 (272)
35 3uq3_A Heat shock protein STI1 99.7 4.4E-14 1.5E-18 122.0 24.0 225 142-384 4-235 (258)
36 2pl2_A Hypothetical conserved 99.6 3.2E-14 1.1E-18 119.9 21.7 197 142-347 4-211 (217)
37 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.9E-17 113.8 32.6 225 106-351 4-252 (273)
38 2pl2_A Hypothetical conserved 99.6 4E-14 1.4E-18 119.3 21.4 199 106-311 3-212 (217)
39 2ooe_A Cleavage stimulation fa 99.6 1.3E-12 4.3E-17 125.7 34.6 339 70-420 12-454 (530)
40 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-13 9.1E-18 116.9 26.5 197 146-349 40-237 (252)
41 2ho1_A Type 4 fimbrial biogene 99.6 3.5E-13 1.2E-17 116.1 26.4 201 108-313 37-238 (252)
42 2vq2_A PILW, putative fimbrial 99.6 4.7E-13 1.6E-17 112.9 26.6 199 144-349 9-210 (225)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-14 8E-19 125.1 18.7 219 83-312 18-243 (275)
44 2q7f_A YRRB protein; TPR, prot 99.6 6.8E-14 2.3E-18 119.8 21.0 196 146-349 26-221 (243)
45 2vq2_A PILW, putative fimbrial 99.6 5.6E-13 1.9E-17 112.4 26.2 208 107-320 7-216 (225)
46 2h6f_A Protein farnesyltransfe 99.6 2.6E-13 8.9E-18 123.9 25.3 251 107-369 96-365 (382)
47 3u4t_A TPR repeat-containing p 99.6 9.2E-13 3.1E-17 114.8 27.0 228 185-419 9-249 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-13 5.7E-18 117.3 20.7 203 106-314 21-223 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5E-18 120.0 20.3 242 118-373 15-262 (275)
50 1ouv_A Conserved hypothetical 99.6 1E-11 3.6E-16 108.4 31.8 223 142-386 5-252 (273)
51 4g1t_A Interferon-induced prot 99.6 7.8E-12 2.7E-16 118.2 33.1 352 37-394 51-469 (472)
52 2h6f_A Protein farnesyltransfe 99.6 1.3E-12 4.4E-17 119.3 26.1 247 72-332 98-364 (382)
53 1xi4_A Clathrin heavy chain; a 99.6 8E-12 2.7E-16 126.5 33.5 253 113-417 1054-1306(1630)
54 1xi4_A Clathrin heavy chain; a 99.5 1.5E-11 5.1E-16 124.5 32.7 265 107-413 1104-1377(1630)
55 3sf4_A G-protein-signaling mod 99.5 4.3E-13 1.5E-17 124.0 20.4 289 81-373 20-363 (406)
56 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.5E-16 109.8 28.4 217 87-312 33-269 (308)
57 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5E-16 109.5 28.4 220 125-350 33-270 (308)
58 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.9E-17 121.6 20.1 238 111-349 51-331 (411)
59 3ro2_A PINS homolog, G-protein 99.5 1.7E-12 6E-17 116.3 20.6 266 81-350 16-332 (338)
60 3sf4_A G-protein-signaling mod 99.5 2.3E-12 7.9E-17 119.0 21.1 304 106-410 7-366 (406)
61 4a1s_A PINS, partner of inscut 99.5 1.4E-12 4.9E-17 120.9 19.0 266 81-350 59-372 (411)
62 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-12 5.3E-17 115.5 17.5 237 181-419 29-306 (311)
63 3ro2_A PINS homolog, G-protein 99.5 3.5E-12 1.2E-16 114.3 19.9 278 110-419 7-331 (338)
64 4abn_A Tetratricopeptide repea 99.5 4.1E-12 1.4E-16 120.1 21.2 206 97-309 91-317 (474)
65 3nf1_A KLC 1, kinesin light ch 99.5 8.7E-13 3E-17 117.2 15.3 240 107-349 26-306 (311)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.7E-11 5.7E-16 100.1 21.7 165 108-277 5-169 (184)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-11 5.2E-16 100.4 21.0 165 179-349 5-169 (184)
68 3ulq_A Response regulator aspa 99.4 4.4E-11 1.5E-15 109.9 24.1 161 151-311 111-291 (383)
69 4abn_A Tetratricopeptide repea 99.4 9.9E-12 3.4E-16 117.4 19.8 215 123-346 83-317 (474)
70 3ulq_A Response regulator aspa 99.4 1E-10 3.5E-15 107.4 26.1 231 185-419 109-367 (383)
71 1hz4_A MALT regulatory protein 99.4 1.6E-09 5.4E-14 99.0 30.2 272 112-383 18-320 (373)
72 3e4b_A ALGK; tetratricopeptide 99.3 3.3E-10 1.1E-14 106.3 24.8 48 107-157 68-120 (452)
73 3edt_B KLC 2, kinesin light ch 99.3 1E-10 3.6E-15 102.0 19.6 169 251-420 87-281 (283)
74 3e4b_A ALGK; tetratricopeptide 99.3 8.6E-11 3E-15 110.3 20.2 308 81-421 14-388 (452)
75 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.3E-15 92.5 20.7 163 145-312 10-172 (186)
76 4i17_A Hypothetical protein; T 99.3 4.6E-10 1.6E-14 95.0 22.8 207 141-364 5-221 (228)
77 3q15_A PSP28, response regulat 99.3 2.7E-09 9.1E-14 97.8 29.3 231 81-312 23-289 (378)
78 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.2E-15 92.8 19.3 163 110-277 10-172 (186)
79 3q15_A PSP28, response regulat 99.3 1E-09 3.5E-14 100.6 24.5 234 111-349 104-364 (378)
80 3edt_B KLC 2, kinesin light ch 99.3 8.2E-11 2.8E-15 102.6 15.5 158 83-240 14-195 (283)
81 4gyw_A UDP-N-acetylglucosamine 99.3 2.9E-10 9.9E-15 112.0 20.7 164 143-312 9-173 (723)
82 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-10 1.1E-14 111.8 20.4 165 107-277 8-173 (723)
83 1hz4_A MALT regulatory protein 99.3 2.1E-09 7.3E-14 98.1 24.4 265 81-349 25-321 (373)
84 4i17_A Hypothetical protein; T 99.2 1.9E-09 6.5E-14 91.1 21.7 200 106-321 5-215 (228)
85 4e6h_A MRNA 3'-END-processing 99.2 1.6E-07 5.6E-12 91.5 36.1 146 56-206 52-221 (679)
86 4e6h_A MRNA 3'-END-processing 99.2 4.1E-07 1.4E-11 88.7 36.1 373 34-419 63-569 (679)
87 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 92.3 18.2 162 116-277 45-227 (292)
88 2fo7_A Synthetic consensus TPR 99.1 9.1E-09 3.1E-13 78.4 17.2 21 149-169 7-27 (136)
89 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.2E-13 87.6 20.7 188 162-360 85-290 (310)
90 3qky_A Outer membrane assembly 99.1 1.2E-08 4.1E-13 88.1 19.7 187 141-350 13-224 (261)
91 3mv2_B Coatomer subunit epsilo 99.1 8.6E-08 3E-12 83.3 24.4 244 116-385 21-282 (310)
92 1qqe_A Vesicular transport pro 99.1 1.1E-08 3.8E-13 90.0 18.9 209 123-348 32-267 (292)
93 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.6E-13 77.4 17.1 129 110-242 3-131 (136)
94 3qky_A Outer membrane assembly 99.0 2E-08 6.7E-13 86.8 19.0 190 105-314 12-225 (261)
95 3urz_A Uncharacterized protein 99.0 3.2E-08 1.1E-12 82.3 17.6 122 149-277 60-185 (208)
96 3urz_A Uncharacterized protein 99.0 5.9E-08 2E-12 80.6 18.2 124 185-312 60-185 (208)
97 3rjv_A Putative SEL1 repeat pr 99.0 1.6E-07 5.6E-12 78.2 20.7 175 127-314 5-198 (212)
98 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.4E-07 4.7E-12 79.4 20.3 190 142-351 3-214 (225)
99 2pzi_A Probable serine/threoni 98.9 4.1E-08 1.4E-12 96.9 19.5 174 190-372 402-583 (681)
100 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.9E-13 100.9 14.8 200 100-310 386-602 (681)
101 4ga2_A E3 SUMO-protein ligase 98.9 4.9E-09 1.7E-13 82.2 9.3 80 289-373 36-115 (150)
102 4ga2_A E3 SUMO-protein ligase 98.9 9.6E-09 3.3E-13 80.6 10.8 145 220-372 3-149 (150)
103 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-07 3.7E-12 84.3 18.6 201 82-311 3-222 (307)
104 3dra_A Protein farnesyltransfe 98.9 1.9E-06 6.6E-11 75.5 26.0 216 196-419 50-286 (306)
105 2r5s_A Uncharacterized protein 98.9 2.3E-08 7.7E-13 80.8 12.6 157 113-274 11-169 (176)
106 3u3w_A Transcriptional activat 98.9 5.5E-07 1.9E-11 79.1 22.5 163 149-311 81-264 (293)
107 3dra_A Protein farnesyltransfe 98.9 4.2E-06 1.5E-10 73.3 27.6 231 125-363 50-299 (306)
108 2vsy_A XCC0866; transferase, g 98.9 7E-08 2.4E-12 93.4 17.5 154 156-314 2-158 (568)
109 3qou_A Protein YBBN; thioredox 98.9 9.7E-08 3.3E-12 83.7 16.8 164 107-275 116-281 (287)
110 2r5s_A Uncharacterized protein 98.9 4.9E-08 1.7E-12 78.8 13.8 154 81-242 17-172 (176)
111 3rjv_A Putative SEL1 repeat pr 98.9 3.7E-07 1.3E-11 76.0 19.4 165 106-280 16-199 (212)
112 3qou_A Protein YBBN; thioredox 98.9 1.2E-07 4.1E-12 83.1 17.0 160 182-347 120-281 (287)
113 2vsy_A XCC0866; transferase, g 98.9 7.7E-08 2.6E-12 93.1 17.1 154 83-244 2-158 (568)
114 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.2E-07 1.8E-11 75.9 19.7 184 213-421 3-214 (225)
115 3u3w_A Transcriptional activat 98.8 1.4E-06 4.8E-11 76.5 22.9 167 111-277 78-265 (293)
116 2uy1_A Cleavage stimulation fa 98.8 2.8E-05 9.5E-10 73.4 30.9 356 40-419 18-412 (493)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 2.7E-06 9.2E-11 74.6 22.3 168 144-311 76-264 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.1E-07 3.1E-11 73.4 18.1 125 148-278 11-150 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.6E-11 71.8 19.3 129 181-314 8-151 (213)
120 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-06 3.5E-11 78.0 17.8 200 83-305 29-253 (307)
121 3q7a_A Farnesyltransferase alp 98.7 1.8E-05 6.2E-10 70.2 24.8 113 302-419 185-330 (349)
122 2qfc_A PLCR protein; TPR, HTH, 98.6 4.5E-06 1.5E-10 73.2 20.4 167 110-276 77-264 (293)
123 3gw4_A Uncharacterized protein 98.6 8.4E-07 2.9E-11 72.9 14.9 63 287-349 110-175 (203)
124 1a17_A Serine/threonine protei 98.6 1.8E-06 6.2E-11 68.2 15.9 128 109-240 14-143 (166)
125 4gco_A Protein STI-1; structur 98.6 1.2E-06 4.2E-11 66.0 14.0 106 252-363 16-121 (126)
126 1a17_A Serine/threonine protei 98.6 2.6E-06 9E-11 67.3 16.4 90 185-276 19-108 (166)
127 1na0_A Designed protein CTPR3; 98.6 2.5E-06 8.5E-11 63.5 15.1 94 145-241 11-104 (125)
128 1na0_A Designed protein CTPR3; 98.6 3.2E-06 1.1E-10 62.9 15.7 96 180-277 10-105 (125)
129 2c2l_A CHIP, carboxy terminus 98.6 2.1E-07 7.1E-12 81.3 10.1 194 142-349 3-198 (281)
130 3gw4_A Uncharacterized protein 98.6 8.7E-07 3E-11 72.8 12.8 156 155-312 4-175 (203)
131 3q7a_A Farnesyltransferase alp 98.6 6.4E-05 2.2E-09 66.6 25.0 172 83-263 67-256 (349)
132 2uy1_A Cleavage stimulation fa 98.6 0.00016 5.6E-09 68.1 29.4 324 72-417 16-380 (493)
133 4gco_A Protein STI-1; structur 98.5 3.7E-06 1.3E-10 63.4 14.6 92 146-240 16-107 (126)
134 4f3v_A ESX-1 secretion system 98.5 3.4E-06 1.2E-10 72.3 15.8 126 221-349 109-236 (282)
135 2lni_A Stress-induced-phosphop 98.5 2.9E-06 1E-10 64.1 14.0 25 145-169 18-42 (133)
136 2vyi_A SGTA protein; chaperone 98.5 4E-06 1.4E-10 63.0 14.7 24 146-169 15-38 (131)
137 2vyi_A SGTA protein; chaperone 98.5 3.8E-06 1.3E-10 63.1 14.5 119 107-229 11-129 (131)
138 2c2l_A CHIP, carboxy terminus 98.5 7.4E-07 2.5E-11 77.8 11.8 195 107-313 3-199 (281)
139 2lni_A Stress-induced-phosphop 98.5 3.3E-06 1.1E-10 63.8 14.1 119 106-228 14-132 (133)
140 3gyz_A Chaperone protein IPGC; 98.5 3.4E-06 1.2E-10 65.7 13.7 95 145-242 38-132 (151)
141 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.7E-11 68.6 10.6 102 105-209 33-134 (151)
142 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4E-11 70.5 11.2 118 192-312 23-143 (177)
143 2e2e_A Formate-dependent nitri 98.5 2.2E-06 7.5E-11 68.9 12.5 119 120-242 22-143 (177)
144 1p5q_A FKBP52, FK506-binding p 98.4 4.9E-06 1.7E-10 74.6 15.3 124 107-233 146-283 (336)
145 1p5q_A FKBP52, FK506-binding p 98.4 4.4E-06 1.5E-10 74.9 14.9 138 142-303 146-283 (336)
146 3dss_A Geranylgeranyl transfer 98.4 0.00023 7.8E-09 62.8 24.8 138 82-227 41-192 (331)
147 4b4t_Q 26S proteasome regulato 98.4 2.1E-05 7.2E-10 72.9 19.5 197 116-312 12-244 (434)
148 2vgx_A Chaperone SYCD; alterna 98.4 1.9E-06 6.5E-11 67.1 10.3 94 252-349 24-117 (148)
149 4f3v_A ESX-1 secretion system 98.4 1.1E-05 3.7E-10 69.2 15.5 125 149-277 108-236 (282)
150 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-05 4.3E-10 62.4 14.3 108 98-208 11-118 (148)
151 3upv_A Heat shock protein STI1 98.4 1.7E-05 5.9E-10 59.5 14.4 92 146-240 7-98 (126)
152 1elw_A TPR1-domain of HOP; HOP 98.4 3E-05 1E-09 56.8 15.4 24 146-169 7-30 (118)
153 4b4t_Q 26S proteasome regulato 98.3 0.00024 8.3E-09 65.7 24.9 193 81-277 15-244 (434)
154 1elw_A TPR1-domain of HOP; HOP 98.3 3E-05 1E-09 56.9 15.2 95 110-207 6-100 (118)
155 2fbn_A 70 kDa peptidylprolyl i 98.3 9.2E-07 3.2E-11 72.6 7.4 27 145-171 40-66 (198)
156 3dss_A Geranylgeranyl transfer 98.3 0.00054 1.8E-08 60.4 25.4 232 119-363 40-315 (331)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-06 3.9E-11 72.1 8.0 27 216-242 40-66 (198)
158 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.6E-10 60.3 13.2 58 182-240 11-68 (127)
159 3upv_A Heat shock protein STI1 98.3 1.4E-05 4.8E-10 60.0 12.9 91 255-349 10-100 (126)
160 2kck_A TPR repeat; tetratricop 98.3 1.6E-05 5.4E-10 57.8 12.8 56 185-241 12-67 (112)
161 2dba_A Smooth muscle cell asso 98.3 3.3E-05 1.1E-09 59.4 15.3 96 249-349 28-127 (148)
162 2xcb_A PCRH, regulatory protei 98.3 7.8E-06 2.7E-10 63.0 11.2 99 107-208 17-115 (142)
163 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.7E-10 60.6 11.7 60 145-206 6-65 (131)
164 2kck_A TPR repeat; tetratricop 98.3 1.3E-05 4.4E-10 58.3 11.8 98 108-208 6-106 (112)
165 2dba_A Smooth muscle cell asso 98.3 5.2E-05 1.8E-09 58.3 15.9 95 144-242 29-127 (148)
166 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.3E-10 60.5 11.5 59 111-170 11-69 (127)
167 2xcb_A PCRH, regulatory protei 98.3 1.8E-05 6E-10 60.9 12.5 88 187-276 26-113 (142)
168 3q49_B STIP1 homology and U bo 98.2 3.6E-05 1.2E-09 58.5 14.1 19 186-204 16-34 (137)
169 3sz7_A HSC70 cochaperone (SGT) 98.2 3.3E-05 1.1E-09 61.0 14.0 95 181-277 13-107 (164)
170 3sz7_A HSC70 cochaperone (SGT) 98.2 1.8E-05 6E-10 62.6 12.4 98 213-312 10-107 (164)
171 3q49_B STIP1 homology and U bo 98.2 3.9E-05 1.3E-09 58.2 13.9 97 142-241 8-104 (137)
172 1elr_A TPR2A-domain of HOP; HO 98.2 2.3E-05 8E-10 58.7 12.1 26 287-312 82-107 (131)
173 3ro3_A PINS homolog, G-protein 98.2 2.3E-05 8E-10 61.1 11.9 99 251-349 51-157 (164)
174 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.2E-10 61.8 10.7 131 110-240 11-155 (164)
175 1hxi_A PEX5, peroxisome target 98.1 4.8E-05 1.7E-09 56.7 11.4 59 181-240 53-111 (121)
176 1hxi_A PEX5, peroxisome target 98.0 6.1E-05 2.1E-09 56.1 11.2 94 111-207 20-113 (121)
177 2xev_A YBGF; tetratricopeptide 98.0 0.00017 5.9E-09 53.9 13.7 90 221-312 9-104 (129)
178 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.4E-10 59.4 6.7 85 262-349 3-89 (117)
179 2xev_A YBGF; tetratricopeptide 98.0 0.00037 1.3E-08 52.0 14.8 89 150-242 9-104 (129)
180 1wao_1 Serine/threonine protei 98.0 3.2E-05 1.1E-09 72.7 10.4 123 112-238 10-134 (477)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00014 4.9E-09 67.9 14.7 89 214-304 317-405 (457)
182 1wao_1 Serine/threonine protei 98.0 3.6E-05 1.2E-09 72.4 10.5 118 188-308 15-134 (477)
183 3rkv_A Putative peptidylprolyl 97.9 0.00019 6.6E-09 56.3 12.6 62 215-277 64-125 (162)
184 1ihg_A Cyclophilin 40; ppiase 97.9 0.00016 5.4E-09 65.5 13.6 119 182-302 226-359 (370)
185 3k9i_A BH0479 protein; putativ 97.9 1.8E-05 6.2E-10 58.5 6.1 84 122-207 4-89 (117)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00021 7.2E-09 66.8 14.6 124 214-341 268-405 (457)
187 3rkv_A Putative peptidylprolyl 97.9 0.00017 6E-09 56.6 11.5 97 215-312 12-125 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.8 0.00028 9.4E-09 63.9 13.6 85 284-373 273-357 (370)
189 1dce_A Protein (RAB geranylger 97.8 0.002 6.8E-08 61.8 20.0 171 195-373 45-242 (567)
190 3n71_A Histone lysine methyltr 97.8 0.00033 1.1E-08 65.6 14.1 91 258-349 318-421 (490)
191 3n71_A Histone lysine methyltr 97.8 0.00024 8.1E-09 66.6 12.9 127 223-349 318-463 (490)
192 2hr2_A Hypothetical protein; a 97.8 0.00037 1.3E-08 53.9 11.6 94 145-241 13-129 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00012 4.1E-09 65.5 9.9 148 108-278 179-328 (338)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 0.0001 3.6E-09 65.9 9.2 149 143-313 179-328 (338)
195 2hr2_A Hypothetical protein; a 97.7 0.00065 2.2E-08 52.6 12.3 63 286-349 59-130 (159)
196 1klx_A Cysteine rich protein B 97.7 0.0014 4.7E-08 49.9 14.1 15 193-207 75-89 (138)
197 1klx_A Cysteine rich protein B 97.6 0.003 1E-07 48.0 15.1 112 84-210 9-128 (138)
198 2l6j_A TPR repeat-containing p 97.6 8.6E-05 2.9E-09 53.9 5.6 61 216-277 6-66 (111)
199 1dce_A Protein (RAB geranylger 97.6 0.0047 1.6E-07 59.2 18.5 171 85-264 44-241 (567)
200 2kat_A Uncharacterized protein 97.6 0.0003 1E-08 51.5 7.9 74 97-171 8-81 (115)
201 1na3_A Designed protein CTPR2; 97.5 0.001 3.5E-08 45.9 9.5 79 285-368 10-88 (91)
202 2l6j_A TPR repeat-containing p 97.5 0.00071 2.4E-08 48.8 8.8 63 143-207 4-66 (111)
203 1na3_A Designed protein CTPR2; 97.4 0.0023 8E-08 44.0 10.7 25 146-170 12-36 (91)
204 2kat_A Uncharacterized protein 97.4 0.0017 6E-08 47.3 10.3 62 179-241 19-80 (115)
205 3ma5_A Tetratricopeptide repea 97.3 0.0006 2.1E-08 48.5 6.9 64 107-171 6-69 (100)
206 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.4E-08 46.7 7.8 64 283-349 6-69 (100)
207 1zu2_A Mitochondrial import re 97.2 0.001 3.5E-08 51.4 7.2 14 264-277 106-119 (158)
208 1zu2_A Mitochondrial import re 97.2 0.00078 2.7E-08 52.0 6.4 98 82-187 14-132 (158)
209 3mkq_A Coatomer beta'-subunit; 97.1 0.031 1.1E-06 56.0 19.2 125 119-277 610-735 (814)
210 3ly7_A Transcriptional activat 97.0 0.05 1.7E-06 48.3 16.6 74 176-253 274-347 (372)
211 3ly7_A Transcriptional activat 97.0 0.021 7.1E-07 50.7 14.2 74 211-288 274-347 (372)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.025 8.4E-07 56.8 15.3 154 152-347 608-762 (814)
213 3qww_A SET and MYND domain-con 96.7 0.011 3.7E-07 54.4 10.6 88 83-170 311-409 (433)
214 3qwp_A SET and MYND domain-con 96.7 0.024 8.2E-07 52.2 12.9 94 255-349 293-399 (429)
215 3qww_A SET and MYND domain-con 96.6 0.011 3.7E-07 54.4 10.3 88 261-349 310-410 (433)
216 3mkq_B Coatomer subunit alpha; 96.6 0.13 4.3E-06 40.3 14.4 103 187-310 13-115 (177)
217 3qwp_A SET and MYND domain-con 96.4 0.027 9.2E-07 51.8 11.7 93 220-312 293-399 (429)
218 3mkq_B Coatomer subunit alpha; 96.3 0.27 9.1E-06 38.5 16.8 100 224-346 15-114 (177)
219 2kc7_A BFR218_protein; tetratr 96.3 0.015 5.2E-07 40.7 7.3 51 190-241 11-62 (99)
220 1wy6_A Hypothetical protein ST 96.2 0.25 8.4E-06 36.5 15.3 138 261-422 19-156 (172)
221 2kc7_A BFR218_protein; tetratr 96.2 0.036 1.2E-06 38.6 8.9 55 293-349 9-63 (99)
222 4b4t_P 26S proteasome regulato 96.1 0.75 2.6E-05 42.4 19.7 97 253-349 141-246 (445)
223 3bee_A Putative YFRE protein; 95.9 0.087 3E-06 36.5 9.6 46 196-242 26-71 (93)
224 1pc2_A Mitochondria fission pr 95.9 0.12 4E-06 39.4 10.8 80 231-312 15-99 (152)
225 2v5f_A Prolyl 4-hydroxylase su 95.7 0.11 3.8E-06 36.8 9.8 26 324-349 49-74 (104)
226 1wy6_A Hypothetical protein ST 95.7 0.41 1.4E-05 35.4 14.0 65 250-315 92-156 (172)
227 1pc2_A Mitochondria fission pr 95.7 0.2 6.7E-06 38.2 11.3 69 102-171 26-99 (152)
228 3bee_A Putative YFRE protein; 95.6 0.27 9.3E-06 34.0 11.1 47 124-171 25-71 (93)
229 2v5f_A Prolyl 4-hydroxylase su 95.5 0.13 4.5E-06 36.4 9.5 70 249-320 5-80 (104)
230 3u64_A Protein TP_0956; tetrat 94.5 0.38 1.3E-05 41.0 10.7 110 143-255 154-283 (301)
231 3u64_A Protein TP_0956; tetrat 94.3 0.87 3E-05 38.8 12.4 107 195-311 179-296 (301)
232 4fhn_B Nucleoporin NUP120; pro 94.0 1.6 5.3E-05 45.7 16.5 210 185-404 818-1079(1139)
233 4b4t_P 26S proteasome regulato 93.9 3.8 0.00013 37.6 22.6 192 81-277 27-246 (445)
234 4fhn_B Nucleoporin NUP120; pro 93.6 1.9 6.4E-05 45.1 16.3 81 217-299 902-986 (1139)
235 4gns_B Protein CSD3, chitin bi 93.4 1.3 4.5E-05 43.5 13.5 53 257-310 345-397 (754)
236 1nzn_A CGI-135 protein, fissio 93.3 1.4 4.7E-05 32.2 10.4 23 327-349 80-102 (126)
237 3lvg_A Clathrin heavy chain 1; 93.0 0.00018 6E-09 65.3 -12.6 265 106-411 52-324 (624)
238 1nzn_A CGI-135 protein, fissio 92.9 0.81 2.8E-05 33.5 8.7 90 228-320 15-108 (126)
239 2ff4_A Probable regulatory pro 92.8 2 6.7E-05 38.8 13.3 58 147-206 175-232 (388)
240 4h7y_A Dual specificity protei 92.8 1 3.4E-05 34.0 9.1 104 106-212 11-127 (161)
241 1v54_E Cytochrome C oxidase po 92.1 0.85 2.9E-05 31.6 7.3 47 231-277 27-73 (109)
242 4h7y_A Dual specificity protei 91.9 2.1 7.3E-05 32.3 9.9 52 228-280 74-125 (161)
243 4ady_A RPN2, 26S proteasome re 91.9 12 0.0004 37.8 19.7 259 152-418 383-656 (963)
244 2ff4_A Probable regulatory pro 91.8 0.92 3.1E-05 40.9 9.8 67 183-250 175-246 (388)
245 1v54_E Cytochrome C oxidase po 91.3 2.6 8.9E-05 29.2 9.7 69 258-329 18-87 (109)
246 4gns_B Protein CSD3, chitin bi 90.8 1.5 5E-05 43.1 10.5 128 111-241 251-398 (754)
247 3lvg_A Clathrin heavy chain 1; 90.4 1.3E-05 4.4E-10 72.6 -22.9 223 142-404 53-276 (624)
248 2y69_E Cytochrome C oxidase su 89.2 1.9 6.5E-05 31.7 7.3 60 231-291 70-129 (152)
249 4b4t_R RPN7, 26S proteasome re 88.5 3.4 0.00012 37.8 10.7 99 251-349 133-236 (429)
250 4ady_A RPN2, 26S proteasome re 88.4 23 0.00078 35.8 24.0 252 81-349 385-657 (963)
251 2y69_E Cytochrome C oxidase su 88.3 6.1 0.00021 29.1 9.7 63 264-329 68-130 (152)
252 1wdy_A 2-5A-dependent ribonucl 87.3 2 6.9E-05 36.2 8.1 22 332-353 190-211 (285)
253 1qsa_A Protein (soluble lytic 85.1 28 0.00095 33.4 29.4 77 112-195 76-152 (618)
254 2p58_C Putative type III secre 83.2 7.4 0.00025 26.9 7.3 18 191-208 81-98 (116)
255 3ffl_A Anaphase-promoting comp 83.0 5.3 0.00018 30.7 7.5 69 65-135 12-90 (167)
256 1wdy_A 2-5A-dependent ribonucl 82.8 3.9 0.00013 34.4 7.7 48 261-308 191-240 (285)
257 2uwj_G Type III export protein 82.2 7 0.00024 27.0 6.9 50 153-209 49-98 (115)
258 3txn_A 26S proteasome regulato 81.6 29 0.001 31.1 19.7 168 143-311 19-208 (394)
259 4b4t_R RPN7, 26S proteasome re 81.3 14 0.00046 33.8 11.1 119 195-313 110-237 (429)
260 2p58_C Putative type III secre 81.1 11 0.00039 26.0 8.1 78 194-279 22-99 (116)
261 2uwj_G Type III export protein 80.5 11 0.00037 26.1 7.3 78 194-279 21-98 (115)
262 3lpz_A GET4 (YOR164C homolog); 79.9 30 0.001 30.1 20.0 42 213-258 135-176 (336)
263 3ffl_A Anaphase-promoting comp 79.4 8.7 0.0003 29.5 7.5 123 182-317 23-155 (167)
264 2wpv_A GET4, UPF0363 protein Y 78.0 33 0.0011 29.6 20.6 115 216-345 35-158 (312)
265 3o48_A Mitochondria fission 1 77.2 19 0.00065 26.4 9.3 48 124-171 59-106 (134)
266 2wpv_A GET4, UPF0363 protein Y 77.0 35 0.0012 29.4 19.6 128 76-237 19-157 (312)
267 3esl_A Checkpoint serine/threo 76.5 25 0.00085 28.0 9.6 53 265-317 95-148 (202)
268 3lpz_A GET4 (YOR164C homolog); 76.3 38 0.0013 29.4 20.7 21 324-344 139-159 (336)
269 1zbp_A Hypothetical protein VP 76.1 16 0.00054 30.6 8.8 53 259-312 7-59 (273)
270 1n11_A Ankyrin; clathrin, BAND 74.0 5.9 0.0002 36.0 6.5 44 46-92 20-66 (437)
271 1y8m_A FIS1; mitochondria, unk 73.5 26 0.00088 26.1 11.2 21 222-242 85-105 (144)
272 3o48_A Mitochondria fission 1 72.1 27 0.00091 25.7 11.7 66 282-349 38-106 (134)
273 3eiq_C Programmed cell death p 71.3 47 0.0016 29.2 11.2 64 286-353 219-285 (358)
274 3eu9_A Huntingtin-interacting 69.1 6.1 0.00021 32.1 5.0 55 364-421 181-237 (240)
275 1k1a_A B-cell lymphoma 3-encod 68.9 14 0.00047 30.0 7.1 86 185-274 12-101 (241)
276 3eu9_A Huntingtin-interacting 68.4 5.4 0.00019 32.4 4.5 17 76-92 12-28 (240)
277 4g8k_A 2-5A-dependent ribonucl 68.3 30 0.001 29.8 9.6 49 41-92 26-78 (337)
278 1y8m_A FIS1; mitochondria, unk 66.3 38 0.0013 25.2 12.2 23 290-312 83-105 (144)
279 3hra_A Ankyrin repeat family p 66.3 6.4 0.00022 31.0 4.4 18 75-92 7-24 (201)
280 1zbp_A Hypothetical protein VP 64.3 23 0.00079 29.7 7.3 55 152-208 6-60 (273)
281 1k1a_A B-cell lymphoma 3-encod 64.1 13 0.00043 30.2 6.0 184 220-415 12-204 (241)
282 2d2s_A Exocyst complex compone 64.0 36 0.0012 27.9 8.4 87 221-310 25-117 (235)
283 4g8k_A 2-5A-dependent ribonucl 63.6 20 0.0007 30.9 7.5 19 74-92 26-44 (337)
284 3esl_A Checkpoint serine/threo 63.1 55 0.0019 26.0 9.8 56 228-283 93-149 (202)
285 3b7b_A Euchromatic histone-lys 62.6 5.3 0.00018 32.5 3.3 54 364-420 181-236 (237)
286 3kea_A K1L; tropism, ANK repea 62.2 13 0.00043 31.5 5.7 209 70-309 28-243 (285)
287 3t8k_A Uncharacterized protein 59.6 35 0.0012 26.5 7.6 97 74-179 7-109 (186)
288 2ion_A PDCD4, programmed cell 59.3 46 0.0016 25.1 7.7 22 184-205 14-35 (152)
289 3aji_A 26S proteasome non-ATPa 58.6 16 0.00053 29.5 5.5 184 185-390 9-199 (231)
290 2nsz_A Programmed cell death p 58.5 50 0.0017 24.0 9.1 22 148-169 12-33 (129)
291 3utm_A Tankyrase-1; tankyrase, 58.3 75 0.0026 27.1 10.4 117 114-248 27-151 (351)
292 2d2s_A Exocyst complex compone 58.3 76 0.0026 26.0 9.9 88 150-240 25-117 (235)
293 3t8k_A Uncharacterized protein 57.9 36 0.0012 26.5 7.3 26 258-283 44-69 (186)
294 4a1g_A Mitotic checkpoint seri 57.8 58 0.002 24.5 9.0 52 301-353 82-133 (152)
295 1n11_A Ankyrin; clathrin, BAND 57.5 53 0.0018 29.5 9.4 173 43-237 50-232 (437)
296 3ltj_A Alpharep-4; protein eng 57.5 66 0.0022 25.0 17.8 18 177-194 88-105 (201)
297 3hra_A Ankyrin repeat family p 57.4 38 0.0013 26.3 7.6 58 70-132 36-93 (201)
298 1qsa_A Protein (soluble lytic 57.3 1.4E+02 0.0047 28.7 24.9 247 81-349 83-347 (618)
299 2rfa_A Transient receptor pote 56.8 58 0.002 25.9 8.8 20 73-92 37-56 (232)
300 2wvi_A Mitotic checkpoint seri 55.9 36 0.0012 26.1 6.6 50 233-282 79-129 (164)
301 3ygs_P Procaspase 9; apoptosis 55.5 32 0.0011 23.5 5.8 39 336-379 52-90 (97)
302 3ltm_A Alpha-REP4; protein eng 55.4 73 0.0025 25.0 18.6 28 357-384 157-184 (211)
303 1bd8_A P19INK4D CDK4/6 inhibit 55.0 7.2 0.00025 29.2 2.7 13 402-414 141-153 (156)
304 3mv2_A Coatomer subunit alpha; 54.9 1E+02 0.0035 26.5 12.0 53 300-352 186-238 (325)
305 2nsz_A Programmed cell death p 53.6 61 0.0021 23.5 8.1 24 218-241 11-34 (129)
306 3jxi_A Vanilloid receptor-rela 51.9 5.3 0.00018 33.2 1.5 19 331-349 232-250 (260)
307 2ion_A PDCD4, programmed cell 49.7 56 0.0019 24.6 6.8 66 217-283 12-79 (152)
308 2wvi_A Mitotic checkpoint seri 49.6 85 0.0029 24.0 9.2 53 301-354 77-129 (164)
309 2zu6_B Programmed cell death p 49.0 1.3E+02 0.0044 25.8 9.8 63 287-353 169-234 (307)
310 2r9g_A AAA ATPase, central reg 48.5 1E+02 0.0034 24.5 9.5 18 227-244 27-44 (204)
311 2zu6_B Programmed cell death p 47.9 17 0.00057 31.4 4.0 63 324-389 169-235 (307)
312 4aez_C MAD3, mitotic spindle c 47.3 40 0.0014 27.3 5.8 52 301-353 131-182 (223)
313 3ygs_P Procaspase 9; apoptosis 45.9 61 0.0021 22.1 6.0 36 123-162 52-87 (97)
314 3ljn_A Hypothetical protein; a 45.6 14 0.00049 32.4 3.4 15 402-416 252-266 (364)
315 3ljn_A Hypothetical protein; a 45.4 42 0.0014 29.3 6.5 24 69-92 16-39 (364)
316 3ltm_A Alpha-REP4; protein eng 45.3 1.1E+02 0.0037 23.9 18.7 80 212-299 93-172 (211)
317 4ets_A Ferric uptake regulatio 45.0 43 0.0015 25.5 5.6 57 207-264 26-84 (162)
318 3kea_A K1L; tropism, ANK repea 45.0 1.3E+02 0.0046 24.9 9.6 192 106-321 27-225 (285)
319 3d9h_A CDNA FLJ77766, highly s 44.1 30 0.001 29.1 5.1 22 111-132 15-36 (285)
320 4ets_A Ferric uptake regulatio 42.8 74 0.0025 24.2 6.6 46 112-157 36-83 (162)
321 3d5l_A Regulatory protein RECX 42.6 1.3E+02 0.0045 24.2 9.4 50 267-317 94-143 (221)
322 2fe3_A Peroxide operon regulat 42.1 83 0.0028 23.3 6.7 38 156-194 34-71 (145)
323 2xig_A Ferric uptake regulatio 41.9 88 0.003 23.3 6.9 45 113-157 31-75 (150)
324 3txn_A 26S proteasome regulato 41.7 1.9E+02 0.0065 25.8 25.9 297 108-423 19-346 (394)
325 3pvs_A Replication-associated 41.7 2E+02 0.007 26.1 14.2 29 177-207 192-220 (447)
326 1mzb_A Ferric uptake regulatio 41.3 78 0.0027 23.1 6.4 35 158-193 33-67 (136)
327 4gq2_M Nucleoporin NUP120; bet 41.3 1.8E+02 0.006 29.7 10.9 48 216-263 899-950 (950)
328 3b7b_A Euchromatic histone-lys 41.2 38 0.0013 27.2 5.2 17 295-311 218-234 (237)
329 2rg8_A Programmed cell death p 40.8 1.1E+02 0.0038 23.3 7.3 60 286-349 12-73 (165)
330 1ug3_A EIF4GI, eukaryotic prot 40.6 1.1E+02 0.0036 26.7 8.1 23 112-134 15-37 (339)
331 3ltj_A Alpharep-4; protein eng 40.1 1.3E+02 0.0043 23.3 20.0 139 247-403 57-195 (201)
332 2xig_A Ferric uptake regulatio 39.9 1.1E+02 0.0039 22.7 7.6 39 261-299 38-76 (150)
333 3aji_A 26S proteasome non-ATPa 39.8 22 0.00075 28.5 3.5 184 148-354 8-198 (231)
334 3bge_A Predicted ATPase; struc 38.7 1.4E+02 0.0049 23.5 9.5 22 227-248 20-41 (201)
335 2w57_A Ferric uptake regulatio 38.7 88 0.003 23.3 6.4 44 114-157 22-66 (150)
336 2fe3_A Peroxide operon regulat 38.4 1.2E+02 0.004 22.4 8.0 38 310-350 13-50 (145)
337 4aez_C MAD3, mitotic spindle c 37.8 1.5E+02 0.0051 24.0 7.8 52 231-282 131-183 (223)
338 4b93_B Ankyrin repeat domain-c 37.7 43 0.0015 27.9 5.0 25 68-92 6-30 (269)
339 3eyy_A Putative iron uptake re 37.6 1.1E+02 0.0039 22.5 6.9 14 301-314 34-47 (145)
340 2rfa_A Transient receptor pote 36.3 1E+02 0.0035 24.4 7.1 20 295-314 162-181 (232)
341 3kae_A CDC27, possible protein 34.8 1.6E+02 0.0054 22.8 7.5 22 399-420 216-237 (242)
342 2w57_A Ferric uptake regulatio 34.7 1.4E+02 0.0048 22.2 7.0 14 301-314 34-47 (150)
343 4b4t_S RPN3, 26S proteasome re 34.6 2.9E+02 0.0098 25.8 12.0 199 67-274 130-366 (523)
344 1mzb_A Ferric uptake regulatio 34.2 1.2E+02 0.0041 22.0 6.4 37 264-300 33-69 (136)
345 3jxi_A Vanilloid receptor-rela 34.1 23 0.00078 29.2 2.7 19 399-417 230-248 (260)
346 3mwm_A ZUR, putative metal upt 33.7 65 0.0022 23.7 4.9 48 112-159 17-64 (139)
347 1oyz_A Hypothetical protein YI 33.4 2E+02 0.0068 23.6 24.6 22 363-384 241-262 (280)
348 2keb_A DNA polymerase subunit 32.6 1.2E+02 0.0041 20.8 6.9 31 198-228 28-58 (101)
349 3eyy_A Putative iron uptake re 32.5 93 0.0032 23.0 5.6 35 159-194 33-67 (145)
350 2p1h_A APAF-1, apoptotic prote 32.0 1.1E+02 0.0039 20.4 6.4 35 121-159 49-83 (94)
351 3e3v_A Regulatory protein RECX 31.5 1.8E+02 0.006 22.4 7.2 50 267-317 51-100 (177)
352 2qx5_A Nucleoporin NIC96; mRNA 31.4 3.6E+02 0.012 26.0 13.0 28 390-417 532-564 (661)
353 2o03_A Probable zinc uptake re 31.3 76 0.0026 23.0 4.9 45 114-158 16-60 (131)
354 4gq2_M Nucleoporin NUP120; bet 31.3 4.1E+02 0.014 27.0 11.7 110 220-335 816-950 (950)
355 4b4t_O 26S proteasome regulato 31.3 2.8E+02 0.0096 24.6 10.7 57 220-276 82-154 (393)
356 2fu4_A Ferric uptake regulatio 31.1 1.1E+02 0.0036 19.7 6.3 34 159-193 33-66 (83)
357 3ctd_A Putative ATPase, AAA fa 31.1 2E+02 0.0069 22.9 9.4 62 219-280 37-106 (213)
358 4a1g_A Mitotic checkpoint seri 30.8 1.7E+02 0.0058 22.0 10.9 50 127-177 84-134 (152)
359 1oai_A Nuclear RNA export fact 30.5 38 0.0013 20.7 2.5 14 158-171 35-48 (59)
360 2pnn_A Transient receptor pote 30.4 38 0.0013 28.1 3.5 20 73-92 13-32 (273)
361 2r9g_A AAA ATPase, central reg 29.5 2.1E+02 0.0072 22.6 9.6 66 254-321 16-89 (204)
362 2ijq_A Hypothetical protein; s 29.4 1.9E+02 0.0064 22.0 8.3 51 156-207 45-103 (161)
363 2y1l_E Darpin-8.4; hydrolase-i 28.3 1.8E+02 0.0062 21.5 7.0 25 68-92 9-33 (169)
364 2xai_A ASB-9, ankyrin repeat a 27.9 84 0.0029 25.7 5.2 140 150-308 7-155 (261)
365 3bu8_A Telomeric repeat-bindin 27.5 2.4E+02 0.0082 22.7 10.9 34 111-144 20-55 (235)
366 1ug3_A EIF4GI, eukaryotic prot 27.3 3E+02 0.01 23.8 9.2 25 217-241 14-38 (339)
367 3eiq_C Programmed cell death p 26.9 3.2E+02 0.011 23.9 14.0 68 251-319 219-288 (358)
368 3hzj_A Rabgap1L, RAB GTPase-ac 26.6 91 0.0031 26.6 5.3 45 236-280 176-220 (310)
369 2o03_A Probable zinc uptake re 26.5 1.1E+02 0.0037 22.1 5.0 35 265-299 26-60 (131)
370 2f6m_A Suppressor protein STP2 26.4 1.1E+02 0.0037 19.1 4.0 44 182-226 5-48 (65)
371 2dzn_A Probable 26S proteasome 26.3 1.3E+02 0.0043 23.7 6.0 16 153-168 9-24 (228)
372 2yru_A Steroid receptor RNA ac 26.3 1.1E+02 0.0038 21.8 4.7 19 259-277 71-89 (118)
373 3kae_A CDC27, possible protein 25.9 2.3E+02 0.0079 21.9 10.8 110 69-207 30-142 (242)
374 3twr_A Tankyrase-2; ankyrin re 25.8 1E+02 0.0035 22.8 5.0 21 72-92 7-27 (165)
375 2b7e_A PRE-mRNA processing pro 25.7 46 0.0016 20.3 2.2 8 198-205 5-12 (59)
376 3mwm_A ZUR, putative metal upt 25.4 78 0.0027 23.2 4.0 45 220-264 19-63 (139)
377 2dzn_A Probable 26S proteasome 25.0 50 0.0017 26.2 3.2 47 186-233 6-52 (228)
378 3utm_A Tankyrase-1; tankyrase, 24.7 3.1E+02 0.011 23.0 10.7 75 235-318 228-307 (351)
379 3bge_A Predicted ATPase; struc 24.5 2.6E+02 0.0089 22.1 8.7 62 254-315 9-78 (201)
380 3twr_A Tankyrase-2; ankyrin re 24.5 1E+02 0.0036 22.7 4.9 13 154-166 16-28 (165)
381 2rg8_A Programmed cell death p 23.1 1.5E+02 0.0052 22.5 5.3 23 254-276 15-37 (165)
382 2f8y_A Notch homolog 1, transl 23.0 71 0.0024 25.1 3.8 7 295-301 133-139 (223)
383 3l6a_A Eukaryotic translation 23.0 3.8E+02 0.013 23.5 10.5 64 145-214 14-83 (364)
384 2yru_A Steroid receptor RNA ac 22.6 1.9E+02 0.0066 20.5 5.4 13 122-134 75-87 (118)
385 3qil_A Clathrin heavy chain 1; 22.4 85 0.0029 22.5 3.4 52 111-165 35-86 (125)
386 1bd8_A P19INK4D CDK4/6 inhibit 22.4 1.1E+02 0.0039 22.1 4.6 18 75-92 4-21 (156)
387 2dod_A Transcription elongatio 22.4 1.1E+02 0.0037 20.2 3.7 31 159-190 16-46 (82)
388 3pvs_A Replication-associated 22.3 4.4E+02 0.015 23.8 12.9 81 219-299 257-345 (447)
389 2etb_A Transient receptor pote 21.4 89 0.0031 25.3 4.2 24 117-140 8-31 (256)
390 4fke_A Aminopeptidase N; zinc 21.3 6.4E+02 0.022 25.4 19.2 91 183-278 690-787 (909)
391 2etb_A Transient receptor pote 21.2 1.3E+02 0.0045 24.2 5.2 21 260-280 10-30 (256)
392 2ijq_A Hypothetical protein; s 20.7 2.8E+02 0.0096 21.0 8.2 53 225-277 43-103 (161)
393 3v30_A DNA-binding protein rfx 20.3 1.3E+02 0.0045 22.3 4.7 14 224-237 9-22 (172)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-34 Score=272.89 Aligned_cols=200 Identities=15% Similarity=0.175 Sum_probs=181.6
Q ss_pred HHHHhhCCC-C-CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------HHHHHHH
Q 014502 97 LDKMLKGNE-S-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD---------VVTALSL 165 (423)
Q Consensus 97 ~~~m~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~ 165 (423)
.+++.+.+. + ....++.+|++|++.|++++|.++|++|.+.|++||..+||++|.+|++.+. +++|.++
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~l 92 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHH
Confidence 455555554 2 2456889999999999999999999999999999999999999999987664 6889999
Q ss_pred HHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014502 166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245 (423)
Q Consensus 166 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 245 (423)
|++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+
T Consensus 93 f~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 93 FKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (423)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 297 (423)
.||..||+++|.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.2e-34 Score=269.70 Aligned_cols=207 Identities=14% Similarity=0.172 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC---------
Q 014502 125 PFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN--------- 194 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--------- 194 (423)
..+..+.+++.+++..+.+. .++.+|++|++.|++++|+++|++|.+ .|++||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 44667778888888766654 689999999999999999999999999 8999999999999999997765
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+++|.++|++|...|+.||..|||++|++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.+..|+..| |+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T--~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST--FDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH--HHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH--HHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999 99999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-32 Score=264.04 Aligned_cols=370 Identities=8% Similarity=-0.085 Sum_probs=256.7
Q ss_pred CCccccHHHHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHH
Q 014502 35 TSVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112 (423)
Q Consensus 35 ~~~~~~~~ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~ 112 (423)
+++..++.++..+.+.+. .++..+++.|.+ ..|+..+|..+... +..|++++|..+ ++++... .+|..+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL----LTKEDLY-NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH----HHHTCGG-GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH----HHHHhcc-ccchhHHH
Confidence 445567888888888884 456888888874 45677888888888 688999999999 4555322 46888899
Q ss_pred HHHHHHhcCCChhHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---
Q 014502 113 CLIALSGKVQNVPFAMHVFTSME-AQ--------------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--- 174 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~-~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--- 174 (423)
.++.+|.+.|++++|.++|+++. .. |.+++..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999998432 21 2334578899999999999999999998888865211
Q ss_pred ------------------------------------------------------------------CCCCHHhHHHHHHH
Q 014502 175 ------------------------------------------------------------------YKPNSKTYDAFISG 188 (423)
Q Consensus 175 ------------------------------------------------------------------~~p~~~~~~~li~~ 188 (423)
.+++..+++.++.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 12566677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (423)
|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 88888888888888888766533 55666666666666666666666666665432 34566677777777777777777
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+ |+.++.+|.+.|++++|.++|+++.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLP--YLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHH--HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776642 23456677777777777777777777777766432 12333 6667777777777777777777776
Q ss_pred hCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC----CCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 349 KQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG----SYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+. .|.++.+|+.++..|.+.|+.+ +.+.+.+++.. +..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 53 3445677777777777777763 55666665544 44555 56677777777777777777777776654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-31 Score=261.91 Aligned_cols=371 Identities=10% Similarity=0.008 Sum_probs=310.2
Q ss_pred CCCccccHHHHHHHhcCCc-hhHHHHHHHh-hhc--------------cCCcChhhHHHHHHH-HhcCCHHHHHHHHHHH
Q 014502 34 STSVSSSNPLISRLLQVPV-SQIKTTLDSV-DIF--------------AFNSSQFSWDALITS-LQSSSPKKAQLVLEWR 96 (423)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~~-~~~~~~~~~m-~~~--------------g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~ 96 (423)
.+++.+++.+...+.+.+. .++.++|+++ ... |.+++..+|+.++.+ .+.|++++|.+.
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---- 222 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC---- 222 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH----
Confidence 4566677888888888874 4557777743 222 334568889998888 788999999999
Q ss_pred HHHHhhCCCCCHhHHHHH--------------------------------------HHHHhcCCChhHHHHHHHHHHHCC
Q 014502 97 LDKMLKGNESCLDEYACL--------------------------------------IALSGKVQNVPFAMHVFTSMEAQG 138 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~g 138 (423)
|+++.+.++.+...+..+ +..|.+.|++++|.++|+++.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 566665555454444433 55666788899999999988775
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE 218 (423)
Q Consensus 139 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 218 (423)
+++..+|+.++.+|.+.|++++|.++|+++.+. + +.+..+++.++.++.+.|++++|.++++++.+.. ..+..+|+
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 579999999999999999999999999999873 2 4477899999999999999999999999998765 44789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 298 (423)
.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 99999999999999999999998754 3467899999999999999999999999999874 457889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCC-hHhHHHHHHHHhhccc
Q 014502 299 RVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ----GLSFKS-AEDVEMVICSYFRCAA 372 (423)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~~l~~~~~~~~~ 372 (423)
++++|.++|+++.+.. |+ ..+ |+.++..|.+.|++++|.++|+++.+. +..|.+ ..+|..++.+|.+.|+
T Consensus 456 ~~~~A~~~~~~~~~~~--~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 456 NILLANEYLQSSYALF--QYDPLL--LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp CHHHHHHHHHHHHHHC--CCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC--CCChHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999998854 43 334 999999999999999999999999875 555554 6789999999999999
Q ss_pred cc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 373 YD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 373 ~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
.+ +.+.+.+++..+ +.+..+|..+..+|.+.|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 95 677777777653 457899999999999999999999999998754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.1e-25 Score=202.08 Aligned_cols=353 Identities=11% Similarity=0.043 Sum_probs=292.6
Q ss_pred hcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh
Q 014502 48 LQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV 124 (423)
Q Consensus 48 ~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~ 124 (423)
.+.+ ...+.+.+..+.+. .|+......++.. ...|++++|... ++...+..+.+..+|..+...+.+.|++
T Consensus 10 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~----~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHF----STLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3344 34556777766543 4554444445544 688999999998 5566666777899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYA 203 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~ 203 (423)
++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.|+
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998863 235668999999999999999999999999873 354 4567778888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502 204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283 (423)
Q Consensus 204 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 283 (423)
++.+.... +..+|+.+...+.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..... +.+
T Consensus 160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 99987533 67899999999999999999999999998864 3456788999999999999999999999998853 335
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
..++..+...|.+.|++++|...++++.+.+ |+.... |..+...|.+.|++++|.+.|+++.+. .|+++.++..+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 311 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDA-YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHH-HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 7889999999999999999999999999854 554332 889999999999999999999999984 47789999999
Q ss_pred HHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 364 ICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 364 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
...+.+.|+.+ +...+.+.+.. .+.+..++..+..++.+.|++++|.+.++++.+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999995 56677666653 344688899999999999999999999999875
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.7e-23 Score=191.29 Aligned_cols=355 Identities=11% Similarity=0.004 Sum_probs=288.3
Q ss_pred CCccccHHHHHH-HhcCCch-hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHH
Q 014502 35 TSVSSSNPLISR-LLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEY 111 (423)
Q Consensus 35 ~~~~~~~~ll~~-l~~~~~~-~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~ 111 (423)
|+......++.. +.+.+.. .+...+....+ ..+.+...|..+... ...|++++|.+. ++++....+.+..+|
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~ 104 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEAIEH----YRHALRLKPDFIDGY 104 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHCCCHHHHHHH----HHHHHHcCcchHHHH
Confidence 333333334433 3444533 44555555544 334567788888888 799999999999 566666666778899
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++.+. .+.+..+|..+...+.+
T Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 105 INLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998642 24567888899999999999999999999873 23457789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (423)
.|++++|.+.|+++.+.+.. +...|..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.
T Consensus 182 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987643 67889999999999999999999999987754 33578899999999999999999999
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 272 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
++++.+.. +.+..++..+...+.+.|++++|...++++.+.. |+.... |..+...+...|++++|.+.++++.+
T Consensus 260 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~-- 333 (388)
T 1w3b_A 260 YRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS-LNNLANIKREQGNIEEAVRLYRKALE-- 333 (388)
T ss_dssp HHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHTTTCHHHHHHHHHHHTT--
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 99999864 3457789999999999999999999999998853 543322 88999999999999999999999987
Q ss_pred CCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCC
Q 014502 352 LSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL 406 (423)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 406 (423)
..|+++.++..+...+.+.|+.+ +...+.+.+.. .+.+...|..+...+.+.|+
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHccC
Confidence 45777999999999999999995 67777777653 23357788888888777653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.1e-22 Score=186.69 Aligned_cols=312 Identities=10% Similarity=-0.001 Sum_probs=224.1
Q ss_pred ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (423)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (423)
+...|..+... +..|++++|... ++++....+.+..+|..+..++...|++++|...|+++.+.+ +.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 45566666666 678888888888 455555566678888888888888888888888888887764 235678888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSV 212 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~ 212 (423)
+..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+.+.|++++|.++|+++.+... .
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~ 175 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-W 175 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 888888888888888888888762 3443 444444 3347788888888888888877643 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH--
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL-- 290 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-- 290 (423)
+..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...++++.... +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 67778888888888888888888888876653 3456778888888888888888888888887642 2234444444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502 291 ----------VKCYCELGRVDELEEQLETLTKCNQSPEVL---LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357 (423)
Q Consensus 291 ----------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 357 (423)
...|.+.|++++|...|+++.+.. |+.. ..+|..+...+.+.|++++|...++++.+. .|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 329 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccH
Confidence 677888888888888888887733 4421 123777788888888888888888887763 45567
Q ss_pred HhHHHHHHHHhhccccc-hHHHHHHHHhCCCcc-cHHHHHHHH
Q 014502 358 EDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKL-RRATYDFLV 398 (423)
Q Consensus 358 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~l~ 398 (423)
..|..+..+|...|+.+ +...+.+.+.. .| +...+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 88888888888888885 55666555552 34 355555555
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-21 Score=184.84 Aligned_cols=312 Identities=11% Similarity=0.012 Sum_probs=256.5
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK 176 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 176 (423)
+.......+.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+. -+
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 91 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KM 91 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 344445556688899999999999999999999999998763 347889999999999999999999999999873 24
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHH
Q 014502 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV---QTYESLI------------HGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~ 241 (423)
.+..++..+..+|.+.|++++|.+.|+++.+.... +. ..+..+. ..+.+.|++++|++.|+++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778999999999999999999999999986432 33 5665554 44889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
+.. +.+...+..+...|...|++++|.++++++.+.. +.+..++..+...|...|++++|...|+++.+. .|+...
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 764 4567889999999999999999999999998763 456889999999999999999999999999874 455443
Q ss_pred HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCChH----hHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502 322 HFFSGI------------IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE----DVEMVICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 322 ~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
. +..+ ...|...|++++|...|+++.+. .|.++. .+..+...+.+.|+.+ +...+.+.+.
T Consensus 247 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 247 C-FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 4444 78899999999999999999884 455543 6788899999999995 6777777765
Q ss_pred CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
. .+.+...|..+..+|.+.|++++|...+++..+.
T Consensus 324 ~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 324 M-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4 2446889999999999999999999999998653
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-21 Score=184.27 Aligned_cols=360 Identities=8% Similarity=-0.094 Sum_probs=290.0
Q ss_pred HHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC
Q 014502 45 SRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ 122 (423)
Q Consensus 45 ~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~ 122 (423)
..+.+.+ ...+...+..+.+.. |+...|..+..+ ...|++++|.+. +++..+..+.+..+|..+..++.+.|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEM----STKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHH----HHHHhccChHHHHHHHHHHHHHHHHh
Confidence 3445555 456688888887665 688888888888 799999999999 56666667778899999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-------------------------------------------------------------
Q 014502 123 NVPFAMHVFTSMEAQGIKP------------------------------------------------------------- 141 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p------------------------------------------------------------- 141 (423)
++++|...|+++...+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 9999999999997764210
Q ss_pred -----------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----cCCC-------CCCHHhHHHHHHHH
Q 014502 142 -----------------DSAVFNSLICACLC---SGDVVTALSLFEIMVS-----SEEY-------KPNSKTYDAFISGF 189 (423)
Q Consensus 142 -----------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~~~~~li~~~ 189 (423)
+...+......+.. .|++++|...|+++.+ ..+. +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 13333444444444 8999999999999876 2111 22356788888999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (423)
...|++++|.+.++++.+.... ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999987544 8889999999999999999999999998764 345678999999999999999999
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
..++++.+.. +.+...+..+...|...|++++|...++++.+.. |+... +|..+...|...|++++|...++++.+
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPE-VPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999864 3356788889999999999999999999998753 43222 288899999999999999999999887
Q ss_pred CCCCCCCh------HhHHHHHHHHhh---ccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 350 QGLSFKSA------EDVEMVICSYFR---CAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 350 ~~~~~~~~------~~~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.. |.++ ..+..+...+.. .|+.+ +...+.+.+... +.+..++..+..++.+.|++++|...+++..+
T Consensus 401 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 401 LE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43 3333 388999999999 99995 677777766542 44678899999999999999999999998765
Q ss_pred c
Q 014502 420 A 420 (423)
Q Consensus 420 ~ 420 (423)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.1e-18 Score=158.78 Aligned_cols=317 Identities=11% Similarity=-0.015 Sum_probs=247.4
Q ss_pred hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
+..|..+-.. ...|++++|... +++..+..+.+..++..+...+...|++++|...|++..+.. +.+...|..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 3445555555 789999999999 556666666788999999999999999999999999998863 2367889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKP----NSKTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSVN 213 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~ 213 (423)
..++...|++++|...|++..+. .| +...+..+ ...+...|++++|.++++++.+... .+
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 153 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WD 153 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-Cc
Confidence 99999999999999999999862 45 33444444 5788899999999999999988753 37
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-----
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ----- 288 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~----- 288 (423)
...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 7888899999999999999999999988764 4567888999999999999999999999998753 22333333
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502 289 -------KLVKCYCELGRVDELEEQLETLTKCNQSPEVLL---HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE 358 (423)
Q Consensus 289 -------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 358 (423)
.+...+.+.|++++|...++++.+.. |+... ..+..+...|...|++++|.+.+++..+. .|+++.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 307 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHH
Confidence 23666889999999999999988744 43321 22556778899999999999999999884 466789
Q ss_pred hHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh
Q 014502 359 DVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR 403 (423)
Q Consensus 359 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 403 (423)
.+..+...+...|+.+ +...+.+.+.. .+-+...+..+..+...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH-NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHH
Confidence 9999999999999995 56666666653 23345666666665543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-19 Score=173.87 Aligned_cols=323 Identities=11% Similarity=-0.039 Sum_probs=263.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
+..|++++|+..| +++.... ||..+|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..++...|+++
T Consensus 17 ~~~g~~~~A~~~~----~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 17 FRNKKYDDAIKYY----NWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHTSCHHHHHHHH----HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhccHHHHHHHH----HHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 7899999999995 5555544 689999999999999999999999999999875 336789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC--------------------------------------------------------------
Q 014502 161 TALSLFEIMVSSEEYKPN-------------------------------------------------------------- 178 (423)
Q Consensus 161 ~A~~~~~~m~~~~~~~p~-------------------------------------------------------------- 178 (423)
+|...|+++.+. + +++
T Consensus 91 ~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 91 DAMFDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999998762 2 111
Q ss_pred -----------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHH
Q 014502 179 -----------------SKTYDAFISGFSS---LGNVDAMNKWYAANIA-----AGF--------SVNVQTYESLIHGSL 225 (423)
Q Consensus 179 -----------------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~ 225 (423)
...+......+.. .|++++|..+|+++.+ ..- ..+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 2222333333333 8999999999999987 311 224567888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
..|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998765 447889999999999999999999999999864 3467788899999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK 384 (423)
Q Consensus 306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 384 (423)
.++++.+.. |+... .+..+...|...|++++|...++++.+. .|.++..+..+...+...|+.+ +...+.+.+.
T Consensus 326 ~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 326 DFDKAKELD--PENIF-PYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHTC--SSCSH-HHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--hhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998854 43322 2888999999999999999999999874 4667899999999999999995 6777776664
Q ss_pred CCC-ccc----HHHHHHHHHHHHh---cCChhHHHHHHHHHHh
Q 014502 385 GSY-KLR----RATYDFLVAGYRR---AGLSGKLDSVINEMKF 419 (423)
Q Consensus 385 ~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 419 (423)
..- .++ ...|..+..++.+ .|++++|...+++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 311 111 3389999999999 9999999999998765
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.5e-18 Score=158.02 Aligned_cols=303 Identities=11% Similarity=0.004 Sum_probs=250.1
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
|+..+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|++..+. .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence 45678888999999999999999999998864 336889999999999999999999999999873 233667899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFS--VNVQTYESL------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 252 (423)
..+...|++++|.+.|++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999886430 144555544 578899999999999999998764 4567889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH-------
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS------- 325 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~------- 325 (423)
..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++..+.. |+.... +.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~~~~~~~ 233 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRC-FAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHH-HHHHHHHHH
Confidence 999999999999999999999999874 4578899999999999999999999999998854 443321 22
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh----HHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHH
Q 014502 326 -----GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED----VEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYD 395 (423)
Q Consensus 326 -----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~ 395 (423)
.+...+...|++++|...+++..+.. |.++.. +..+...+.+.|+.+ +...+.+.+.. .+.+..+|.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHH
Confidence 23667899999999999999998844 444533 456788999999995 67777777664 244688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 396 FLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
.+..++.+.|++++|...+++..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998653
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=7.9e-19 Score=157.97 Aligned_cols=293 Identities=10% Similarity=-0.022 Sum_probs=216.0
Q ss_pred cChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 014502 69 SSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147 (423)
Q Consensus 69 p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 147 (423)
.+...+..+... +..|++++|.+. ++++.+..+.+...+..++..+.+.|++++|..+++++.+.. +.+...|.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKL----TSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 344444555555 677888888888 455556666677777778888888888888888888888753 23567788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 148 SLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (423)
Q Consensus 148 ~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 226 (423)
.+...+...| ++++|.+.|++..+. .+.+...|..+...+...|++++|.+.+++..+.... +...+..+...|..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 8888888888 888888888888762 2335667888888888888888888888888876533 45667778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CccCHHhHHHHHHHHHhcC
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQKLVKCYCELG 298 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--------~~~~~~~~~~li~~~~~~g 298 (423)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..+|...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887654 4456778888888888888888888888876531 1233567778888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHH-hhccccch
Q 014502 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDR 375 (423)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 375 (423)
++++|...+++..+.. |+.... |..+...|...|++++|.+.|++..+ +.|+++..+..+..++ ...|+.++
T Consensus 251 ~~~~A~~~~~~a~~~~--~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 251 KYAEALDYHRQALVLI--PQNAST-YSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp CHHHHHHHHHHHHHHS--TTCSHH-HHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC---
T ss_pred CHHHHHHHHHHHHhhC--ccchHH-HHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchhc
Confidence 8888888888887743 332222 77788888888888888888888776 4566777777777777 45555443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-18 Score=156.04 Aligned_cols=294 Identities=9% Similarity=-0.040 Sum_probs=241.2
Q ss_pred CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183 (423)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 183 (423)
...+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+. .+.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHH
Confidence 34577788899999999999999999999998864 335667778889999999999999999999873 234677888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 184 AFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR 262 (423)
Q Consensus 184 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 262 (423)
.+...+...| ++++|.+.|++..+.... +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 8999999999 999999999999987533 67889999999999999999999999998764 33456677789999999
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCchHHHHHHHHHHHHHhc
Q 014502 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ--------SPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~p~~~~~~~~~li~~~~~~ 334 (423)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... ...... |..+...|...
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~ 249 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL--LNNLGHVCRKL 249 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH--HHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH--HHHHHHHHHHh
Confidence 99999999999999874 45678899999999999999999999999876321 111233 88999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHH-HhcCChh
Q 014502 335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGY-RRAGLSG 408 (423)
Q Consensus 335 g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 408 (423)
|++++|...+++..+. .|.++..+..+...+.+.|+.+ +.+.+.+.+.. .+.+...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999884 4667999999999999999996 56666555543 244677888888888 4556544
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.1e-18 Score=168.25 Aligned_cols=359 Identities=8% Similarity=-0.042 Sum_probs=271.3
Q ss_pred HHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc
Q 014502 43 LISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120 (423)
Q Consensus 43 ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~ 120 (423)
+-..+.+.+ ...+...+..+.+..+ .+...|..+... ...|++++|.+. +++.....+.+..++..+..++..
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEF----TTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCchHHHHHHHHHHHHH
Confidence 334555566 4456888888866543 356677777777 799999999999 566666677789999999999999
Q ss_pred CCChhHHHHHHHHHHHCCC------------------------------------CCCHH--------------------
Q 014502 121 VQNVPFAMHVFTSMEAQGI------------------------------------KPDSA-------------------- 144 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~-------------------- 144 (423)
.|++++|...|+.+....- .|+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999964421110 01111
Q ss_pred ----------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCCC--------HHhHHHHHHHHHhcCCHHHH
Q 014502 145 ----------VFNSLICACLC--------SGDVVTALSLFEIMVSSEEYKPN--------SKTYDAFISGFSSLGNVDAM 198 (423)
Q Consensus 145 ----------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~--------~~~~~~li~~~~~~~~~~~a 198 (423)
....+...+.. .|++++|..+|+++.+. .|+ ..++..+...+...|++++|
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111111111 14788999999999862 344 23567777888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 199 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
.+.+++..+. .|+..+|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999987 4558889999999999999999999999998764 345788999999999999999999999999886
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh-
Q 014502 279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA- 357 (423)
Q Consensus 279 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~- 357 (423)
. +.+...+..+...|...|++++|...++++.+.. |+.... +..+...|...|++++|...|+++.+.. |.++
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 413 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEV-PTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEK 413 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchh
Confidence 4 3356788889999999999999999999998854 443322 8889999999999999999999987633 1112
Q ss_pred -----HhHHHHHHHHhhc----------cccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 358 -----EDVEMVICSYFRC----------AAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 358 -----~~~~~l~~~~~~~----------~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..+......+... |+.+ +...+.+.+.. .+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2234445677777 8885 67777766654 244678899999999999999999999998765
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=184.54 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSS--EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (423)
-..+||++|++|++.|++++|.++|++|.+. .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999887641 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC------HHhHHHHHH
Q 014502 220 LIHGSLKARDF-DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN------ENMAQKLVK 292 (423)
Q Consensus 220 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~ 292 (423)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+++.++++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999884 78899999999999999999999888765543 344444444 3345444 445555667
Q ss_pred HHHhcC
Q 014502 293 CYCELG 298 (423)
Q Consensus 293 ~~~~~g 298 (423)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.8e-17 Score=159.60 Aligned_cols=335 Identities=9% Similarity=-0.019 Sum_probs=255.6
Q ss_pred hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
...|..+-.. +..|++++|.+. +++.....+.+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 99 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKY----YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHH----HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHH
Confidence 3444444444 799999999999 566667777789999999999999999999999999998874 3368899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC-----------------------------------CCCCHH--------------
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEE-----------------------------------YKPNSK-------------- 180 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~-----------------------------------~~p~~~-------------- 180 (423)
..++...|++++|...|+.+..... ..|+..
T Consensus 100 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999999964422000 001111
Q ss_pred ----------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCC
Q 014502 181 ----------------TYDAFISGFSS--------LGNVDAMNKWYAANIAAGFSVN-------VQTYESLIHGSLKARD 229 (423)
Q Consensus 181 ----------------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~ 229 (423)
....+...+.. .|++++|.++++++.+.... + ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhccc
Confidence 11111111111 14788999999998876432 2 2356677788889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (423)
+++|.+.|++..+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999875 4667888899999999999999999999998864 34678899999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCC-
Q 014502 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSY- 387 (423)
Q Consensus 310 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~- 387 (423)
+.+.. |+.... |..+...|...|++++|...++++.+. .|.++..+..+...+...|+.+ +...+.+.+...-
T Consensus 336 a~~~~--~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 336 AQSLN--PENVYP-YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHC--TTCSHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 98854 443222 888999999999999999999999884 4667899999999999999995 6777776654321
Q ss_pred ----cccHHHHHHHHHHHHhc----------CChhHHHHHHHHHHh
Q 014502 388 ----KLRRATYDFLVAGYRRA----------GLSGKLDSVINEMKF 419 (423)
Q Consensus 388 ----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~ 419 (423)
......+.....++.+. |++++|...+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 11223345566778888 999999999998765
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=181.73 Aligned_cols=120 Identities=10% Similarity=0.117 Sum_probs=112.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIA---AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 254 (423)
-..|||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502 255 VLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297 (423)
Q Consensus 255 li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 297 (423)
+|+++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999985 78999999999999999999999998766554
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3.5e-18 Score=156.38 Aligned_cols=278 Identities=11% Similarity=0.007 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
..+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+. .+.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 344555555555555555555555555442 224445555555555555555555555555441 12234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (423)
+...|++++|.+.++++...... +...+..+... . ....+ ...+. .+..+...|++++|
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-----------~~~~~-~~~~~-~~~~~~~~~~~~~A 200 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-----------GGAGL-GPSKR-ILGSLLSDSLFLEV 200 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------C-TTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-----------hhhcc-cHHHH-HHHHHhhcccHHHH
Confidence 55555555555555555544322 11111110000 0 00000 00000 12222245555555
Q ss_pred HHHHHHHHhCCCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 269 KSFLKFLLGGGWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 269 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
...++++.+..... +..++..+...|.+.|++++|...++++.+.. |+... +|..+...|...|++++|...|++.
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL-LWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555432110 24455555555555555555555555555422 32211 1555555555555555555555555
Q ss_pred HhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC----------CcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 348 GKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS----------YKLRRATYDFLVAGYRRAGLSGKLDSVIN 415 (423)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (423)
.+. .|.++..+..+...|.+.|+.+ +...+.+.+... .+....+|..+..++.+.|++++|..+++
T Consensus 278 l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 278 LEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 542 2344555555555555555553 344444333211 01125778888888889999988888765
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.2e-18 Score=154.73 Aligned_cols=274 Identities=8% Similarity=-0.036 Sum_probs=163.6
Q ss_pred ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148 (423)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 148 (423)
+...|..+-.. ...|++++|... +++..+..+.+..++..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 137 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLL----FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA 137 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHH----HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34556666666 799999999999 677777777889999999999999999999999999998874 347889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 227 (423)
+..++...|++++|.+.|+++.+. .|+. ..+..+... .. ...+. ..+.. +..+...
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~-------~~-----------~~~~~-~~~~~-~~~~~~~ 194 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRY---TPAYAHLVTPAEEG-------AG-----------GAGLG-PSKRI-LGSLLSD 194 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT---STTTGGGCC----------------------------------CT-THHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHH-------hh-----------hhccc-HHHHH-HHHHhhc
Confidence 999999999999999999999873 2432 222211000 00 00000 01111 1112244
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 228 RDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 306 (423)
|++++|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555443211 134455555555555555555555555555432 22344555555555556666666666
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCCChHhHHHHHHHHhhccccch
Q 014502 307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL---------SFKSAEDVEMVICSYFRCAAYDR 375 (423)
Q Consensus 307 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~ 375 (423)
++++.+.. |+.... +..+...|...|++++|...|++..+... .+..+..|..+..+|...|+.+.
T Consensus 274 ~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 274 YRRALELQ--PGYIRS-RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHhC--CCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 55555422 332211 55555566666666666666655554210 01115666666777777666653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.4e-17 Score=152.40 Aligned_cols=229 Identities=8% Similarity=-0.012 Sum_probs=119.7
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (423)
Q Consensus 74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (423)
|..+... +..|++++|... +++.....+.+..+|..+...+.+.|++++|...|++..+.. +.+..+|..+..+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILF----MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH----HHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4444333 466666666666 344444444555666666666666666666666666665542 2245566666666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCCH-----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPNS-----------KTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESL 220 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 220 (423)
|...|++++|...|+++.+. .|+. ..+..+...+...|++++|.++++++.+.... ++..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 66666666666666665541 1221 11222345555556666666666665554321 135555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
...|.+.|++++|++.|++..+.. +.+..+|..+...|...|++++|...++++.+.. +.+..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 566666666666666666555432 2334555555555666666666666666555532 22345555555556666666
Q ss_pred HHHHHHHHHHHh
Q 014502 301 DELEEQLETLTK 312 (423)
Q Consensus 301 ~~a~~~~~~~~~ 312 (423)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555544
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2e-17 Score=151.28 Aligned_cols=277 Identities=8% Similarity=-0.060 Sum_probs=164.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|++..+. .+.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 44557777777777777777777777777653 235667777777777777777777777777652 133466777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES----------LIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKV 255 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l 255 (423)
.+|...|++++|.+.|+++.+.... +...+.. +...+.+.|++++|.+.|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 7777777777777777777764311 2222222 255666667777777777666654311 145666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502 256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 335 (423)
...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++++.+. .|+.... |..+...|...|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRS-RYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHH-HHHHHHHHHHCC
Confidence 666666667777766666666542 334556666666666666666666666666653 2432221 566666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN 415 (423)
Q Consensus 336 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (423)
++++|...|++..+......++ + .......+...|..+..++...|+.+.+.++.+
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~----------------~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQ----------------Q--------QVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------------------------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCC----------------c--------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6666666666665421100000 0 000001135677888888888888887776654
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=9.8e-17 Score=144.00 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=198.6
Q ss_pred hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
...|-.+... ...|++++|... +++..+..+.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALA----FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 3344444444 688999999998 556666666688888899999999999999999999988763 3367788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF--------------IS-GFSSLGNVDAMNKWYAANIAAGFSVNV 214 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~ 214 (423)
...+...|++++|.+.+++..+.. +.+...+..+ .. .+...|++++|.+.++++.+.... +.
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 172 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DA 172 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CH
Confidence 999999999999999999888721 2222333333 22 366778888899988888876533 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 294 (423)
..+..+...|.+.|++++|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 788888888888899999999888887654 3456778888888888888988888888887753 34567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCch-----------HHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 295 CELGRVDELEEQLETLTKCNQSPEV-----------LLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~~~p~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
.+.|++++|...++++.+.. |+. ....|..+...+...|+.++|..++++.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888877643 330 2223788888888888888888877643
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.6e-18 Score=153.03 Aligned_cols=282 Identities=9% Similarity=0.065 Sum_probs=117.6
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 161 (423)
..|+.++|.+. ++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++
T Consensus 15 ~~~~ld~A~~f----ae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEF----AERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHH----HHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 44557777777 3443 33457888888888888888888888542 466788888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 162 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
|+.+++..++ . .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark-~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 80 LVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHH-h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 8886666655 2 4556777788888888888888777774 356678888888888888888888888765
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502 242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|+.
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~-- 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE-- 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--
Confidence 36778888888888888888888877 266788888888888888888855544322 33433
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc---chHHHHHHHHhCCCcc------cHH
Q 014502 322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY---DRLDLFLDHIKGSYKL------RRA 392 (423)
Q Consensus 322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~p------~~~ 392 (423)
...++..|.+.|++++|..+++.... ..+.....|+-+...|++-+-- +.++.|...+ .++| +..
T Consensus 210 --l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~ 283 (449)
T 1b89_A 210 --LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAH 283 (449)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTT
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 33577788888888888888888764 4455677777777777765322 2344333221 2233 355
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 014502 393 TYDFLVAGYRRAGLSGKLDSVI 414 (423)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~ 414 (423)
.|.-++-.|.+.++++.|....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 6888888888888888776643
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.7e-16 Score=140.17 Aligned_cols=223 Identities=9% Similarity=0.005 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISG 188 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~ 188 (423)
....+.++|...|+++.|...++. .-+|+..++..+...+...|+.++|++.++++.. .+..| +...+..+...
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHH
Confidence 334445555566666555554432 1234444555555555555566666666665554 33223 23333444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL---EKVLEGLCARRKL 265 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~ 265 (423)
+...|++++|++.+++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++
T Consensus 111 ~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence 5556666666655554 2345555555555566666666666665555432 332111 1122222333555
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH-HHHHH
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD-VEYSV 344 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~-a~~~~ 344 (423)
++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+.. |+.... +..++..+...|+.++ +.+++
T Consensus 183 ~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~-l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 183 QDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET-LINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 5555555555554 23445555555555555555555555555555422 332221 4445555555555543 34555
Q ss_pred HHHHh
Q 014502 345 GRMGK 349 (423)
Q Consensus 345 ~~m~~ 349 (423)
+++.+
T Consensus 259 ~~~~~ 263 (291)
T 3mkr_A 259 SQLKD 263 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.5e-16 Score=142.77 Aligned_cols=277 Identities=10% Similarity=-0.032 Sum_probs=159.9
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.|+++.+. .+.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 44556777777888888888888888877753 236677777888888888888888888887762 234566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL--------------IH-GSLKARDFDSVDRFYEEMMSLGIIPSIPI 251 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (423)
..+...|++++|.+.+++..+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 8888888888888888887766422 23333332 11 2445555555555555554432 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~ 331 (423)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. |+.... |..+...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~l~~~~ 250 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRV-MYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH-HHHHHHHH
Confidence 5555555555555555555555555432 2234445555555555555555555555554422 222111 44555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHH
Q 014502 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD 411 (423)
Q Consensus 332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 411 (423)
...|++++|.+.+++..+......++. + ......+...|..+..++.+.|++++|.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~------------~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPT------------G------------EASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----------------------------CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCcccccc------------c------------cchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 555555555555555443211000000 0 0000114677888889999999999988
Q ss_pred HHHHH
Q 014502 412 SVINE 416 (423)
Q Consensus 412 ~~~~~ 416 (423)
.++++
T Consensus 307 ~~~~~ 311 (327)
T 3cv0_A 307 LTYAQ 311 (327)
T ss_dssp HHTTC
T ss_pred HHHHH
Confidence 88764
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.8e-16 Score=135.53 Aligned_cols=274 Identities=10% Similarity=0.008 Sum_probs=206.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502 115 IALSGKVQNVPFAMHVFTSMEAQGIKPDS--AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192 (423)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 192 (423)
++.....|+++.|+..++..... .|+. .....+.++|...|++++|+..++.. -+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 34455679999999988876543 3433 45566788999999999998766442 356778888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502 193 GNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271 (423)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 271 (423)
++.++|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998876555 455666777889999999999999887 46778888999999999999999999
Q ss_pred HHHHHhCCCccCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502 272 LKFLLGGGWKINENMA---QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG 348 (423)
Q Consensus 272 ~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 348 (423)
++++.+.. |+.... ..++..+...|++++|..+|+++.+.. |+... +|+.+..++...|++++|...|++..
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLL-LLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998863 553211 223344455689999999999998853 44332 28889999999999999999999988
Q ss_pred hCCCCCCChHhHHHHHHHHhhccccc-hH-HHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHH
Q 014502 349 KQGLSFKSAEDVEMVICSYFRCAAYD-RL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
+ ..|+++.++..++..+...|+.+ ++ +.+.+.+.. .|+... +.+...+.+.++++..-
T Consensus 228 ~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 D--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHH
Confidence 8 45778999999999999999884 44 455555543 444322 33455666677766543
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=9.3e-13 Score=125.33 Aligned_cols=331 Identities=10% Similarity=-0.032 Sum_probs=250.1
Q ss_pred hHHHHHHHhhhccCCcChhhHHHHHHH-Hh----cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc----CCCh
Q 014502 54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQ----SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNV 124 (423)
Q Consensus 54 ~~~~~~~~m~~~g~~p~~~~~~~li~~-~~----~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~ 124 (423)
.+...+....+.| +...+..|-.. .. .+++++|.+.| ++....+ +...+..|...|.. .+++
T Consensus 61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~----~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY----KKAALKG--LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH----HHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH----HHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 4455566555443 33444444444 34 67888888885 4443333 66777778888877 7899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHH
Q 014502 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVD 196 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~ 196 (423)
++|.+.|++..+.| +...+..+...|.. .+++++|++.|++..+ . .+...+..|...|.. .++.+
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q---GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 99999999988875 67778888888877 7889999999998887 3 367778888888887 78999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 014502 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRV 268 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 268 (423)
+|.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|
T Consensus 205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A 278 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKA 278 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 9999999888765 56677777777776 789999999999887764 34566666666766 7899999
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC---ChhHH
Q 014502 269 KSFLKFLLGGGWKINENMAQKLVKCYCEL-----GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD---RLDDV 340 (423)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---~~~~a 340 (423)
..++++..+.| +...+..+...|... +++++|...+++..+.+. ... +..+...|...| +.++|
T Consensus 279 ~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a--~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 279 LEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATA--QANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHH--HHHHHHHHHhCCCcccHHHH
Confidence 99999988765 455677777888877 899999999999888642 222 566677777656 78899
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHHHHhh----ccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHH
Q 014502 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFR----CAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLD 411 (423)
Q Consensus 341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 411 (423)
.+.|++..+.| ++..+..+...|.. .++.+ +...+.+....+ ++..+..+...|.+ .++.++|.
T Consensus 351 ~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 351 VEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999988864 48888888888887 66664 677777777654 56778888888888 89999999
Q ss_pred HHHHHHHhcC
Q 014502 412 SVINEMKFAE 421 (423)
Q Consensus 412 ~~~~~m~~~g 421 (423)
..|++-.+.|
T Consensus 424 ~~~~~A~~~~ 433 (490)
T 2xm6_A 424 AWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9998876654
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=7.2e-14 Score=134.39 Aligned_cols=368 Identities=11% Similarity=0.017 Sum_probs=240.0
Q ss_pred CccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHH
Q 014502 36 SVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113 (423)
Q Consensus 36 ~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~ 113 (423)
+...|..++. +.+.+ ..++..+++.+.+. .+.+...|...+.. .+.|++++|..+ |++..... |+...|..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~----~~ral~~~-p~~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKL----FQRCLMKV-LHIDLWKC 84 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHTTTC-CCHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcC-CChHHHHH
Confidence 3446666665 35555 55668899998753 23346678888888 688999999999 56666554 68778877
Q ss_pred HHHHH-hcCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCC
Q 014502 114 LIALS-GKVQNVPFAMH----VFTSMEAQ-GIKP-DSAVFNSLICACLC---------SGDVVTALSLFEIMVSSEEYKP 177 (423)
Q Consensus 114 l~~~~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~p 177 (423)
.+... ...|+++.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++..+ ....+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhh
Confidence 77533 45677777665 77766543 5444 56788888887665 6899999999999986 21111
Q ss_pred CHHhHHHHHHHH-------------HhcCCHHH-----------------------------------------------
Q 014502 178 NSKTYDAFISGF-------------SSLGNVDA----------------------------------------------- 197 (423)
Q Consensus 178 ~~~~~~~li~~~-------------~~~~~~~~----------------------------------------------- 197 (423)
....|....... .+.++++.
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 122332221110 01112222
Q ss_pred -------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHH
Q 014502 198 -------------MNKWYAANIAAGFSVNVQTYESLIHGSLK-------ARDFD-------SVDRFYEEMMSLGIIPSIP 250 (423)
Q Consensus 198 -------------a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~ 250 (423)
+..+|++..... +-+...|......+.+ .|+++ +|.++|++..+.-.+-+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 333444444332 1245556666665554 67876 7888888876522233467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-H-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-E-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII 328 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 328 (423)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. |..... |....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~-~~~~a 397 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV-YVTAA 397 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH-HHHHH
Confidence 7888888888888888888888888874 343 2 477778888888888888888888887743 332111 22211
Q ss_pred -HHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC-Cccc--HHHHHHHHHHHHh
Q 014502 329 -RLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS-YKLR--RATYDFLVAGYRR 403 (423)
Q Consensus 329 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~ 403 (423)
..+...|+.++|..+|++..+. .|+++..|..++..+.+.|+.+ +...+.+.+... ..|+ ...|...+....+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 1233578888888888888773 3667888888888888888885 556666666542 2232 4467777888888
Q ss_pred cCChhHHHHHHHHHHh
Q 014502 404 AGLSGKLDSVINEMKF 419 (423)
Q Consensus 404 ~g~~~~a~~~~~~m~~ 419 (423)
.|+.+.+.++.+++.+
T Consensus 476 ~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 476 IGDLASILKVEKRRFT 491 (530)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877653
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.2e-12 Score=124.51 Aligned_cols=318 Identities=11% Similarity=0.005 Sum_probs=258.3
Q ss_pred ChhhHHHHHHH-Hh----cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCC
Q 014502 70 SQFSWDALITS-LQ----SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIK 140 (423)
Q Consensus 70 ~~~~~~~li~~-~~----~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~ 140 (423)
++..+..+-.. .. .+++++|.+.| ++..+. .+..++..|...|.. .+++++|.+.|++..+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~----~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWF----RRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHH----HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHH----HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 44454444444 34 68999999995 444333 467788889999988 899999999999999875
Q ss_pred CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 014502 141 PDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSV 212 (423)
Q Consensus 141 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~ 212 (423)
+...+..+...|.. .+++++|+..|++..+ . -+...+..|...|.. .++.++|+++|++..+.|
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--- 181 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-Q---GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--- 181 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 77888888888988 8899999999999987 3 366778888888887 789999999999998875
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCH
Q 014502 213 NVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINE 284 (423)
Q Consensus 213 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~ 284 (423)
+...+..+...|.+ .+++++|.+.|++..+.| +...+..+...|.. .+++++|..++++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 67888888888988 899999999999998865 56677777777776 899999999999999875 45
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCC
Q 014502 285 NMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-----DRLDDVEYSVGRMGKQGLSFK 355 (423)
Q Consensus 285 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~ 355 (423)
..+..+...|.. .++.++|...|++..+.+. ... +..+...|... ++.++|...|++..+.|
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~---~~a--~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---- 326 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN---SDG--QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---- 326 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC---HHH--HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC---HHH--HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----
Confidence 667777788887 8999999999999987642 222 66677778777 89999999999998865
Q ss_pred ChHhHHHHHHHHhhcc---cc-chHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 014502 356 SAEDVEMVICSYFRCA---AY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 356 ~~~~~~~l~~~~~~~~---~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 421 (423)
++..+..+...|...| +. ++.+.+.+..+. .++..+..+...|.. .+++++|.+.|++..+.|
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 3788888888888765 44 367777777765 367788899999998 899999999999987765
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=6.7e-16 Score=139.95 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=128.7
Q ss_pred chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHH
Q 014502 52 VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130 (423)
Q Consensus 52 ~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (423)
..++.+.++.+ +++..|..+..+ ++.|++.+|.+.| .+ .+|...|..++..+...|++++|+.+
T Consensus 19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsf----ik-----a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY----IK-----ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHH----Hc-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34556666665 233589999999 8999999999995 22 36888999999999999999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014502 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF 210 (423)
Q Consensus 131 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 210 (423)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 8877764 4567889999999999999999988773 377789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290 (423)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 290 (423)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|+ -...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHH
Confidence 37999999999999999999999988 378999999999999999999966554422 2333 35568
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC-----CChHhHHHH
Q 014502 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS--DRLDDVEYSVGRMGKQGLSF-----KSAEDVEMV 363 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~-----~~~~~~~~l 363 (423)
+..|.+.|++++|..+++...... +.. ..+|+.|...|++- ++..+.++.|.. .-++.| .++..|..+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le--~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE--RAH-MGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST--TCC-HHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc--HHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 332 22377777777655 334444444432 122333 346778888
Q ss_pred HHHHhhccccc-hHH
Q 014502 364 ICSYFRCAAYD-RLD 377 (423)
Q Consensus 364 ~~~~~~~~~~~-~~~ 377 (423)
...|.+.++++ |+.
T Consensus 289 ~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 289 VFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhhchHHHHHH
Confidence 88888888886 444
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.7e-15 Score=127.19 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCC----HHhHH
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPN----SKTYD 183 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~----~~~~~ 183 (423)
..|..+...+...|++++|...|++..+.. .+...|..+..++...|++++|.+.+++..+.. ...++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666666667777777777777766655 466666777777777777777777776665411 00111 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (423)
.+...+...|++++|.+.|++..+.. |+. ..+.+.|++++|.+.++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66667777777777777777666642 332 23455566777777776666542 223445666666666777
Q ss_pred CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343 (423)
Q Consensus 264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~ 343 (423)
++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+.. |+.... |..+...|...|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRA-YIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHH-HHHHHHHHHHHhhHHHHHHH
Confidence 7777777777766643 2345666666777777777777777777766633 332221 66666677777777777777
Q ss_pred HHHHHh
Q 014502 344 VGRMGK 349 (423)
Q Consensus 344 ~~~m~~ 349 (423)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766655
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-13 Score=129.07 Aligned_cols=343 Identities=11% Similarity=0.009 Sum_probs=216.1
Q ss_pred ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhC-----CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-----C
Q 014502 70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKG-----NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----G 138 (423)
Q Consensus 70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g 138 (423)
....||.+-.. ...|++++|++.|+..++-.... .+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34556666555 68899999999976655433322 1234678999999999999999999999887642 1
Q ss_pred -CC-CCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 014502 139 -IK-PDSAVFNSLICACLCS--GDVVTALSLFEIMVSSEEYKPN-SKTYDAFISG---FSSLGNVDAMNKWYAANIAAGF 210 (423)
Q Consensus 139 -~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~ 210 (423)
.. ....+++....++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 11 1345666666666554 5789999999998873 354 3444444433 4456777888888888877653
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh
Q 014502 211 SVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM 286 (423)
Q Consensus 211 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 286 (423)
. +..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3 56666666555544 467788999998887654 4556778888899999999999999999988753 334556
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 287 AQKLVKCYCEL-------------------GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 287 ~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
+..+..+|... +..+.|...+++..+.+ |+.... +..+...|...|++++|++.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRV-CSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCC-HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cchhhh-hhhHHHHHHHhccHHHHHHHHHHH
Confidence 66665555332 23566777777776643 332222 777888899999999999999988
Q ss_pred HhCCCCCCChH-hHHHHHH-HHhhccccc-hHHHHHHHHhCC-----------------------CcccHHHHHHHHHHH
Q 014502 348 GKQGLSFKSAE-DVEMVIC-SYFRCAAYD-RLDLFLDHIKGS-----------------------YKLRRATYDFLVAGY 401 (423)
Q Consensus 348 ~~~~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~-----------------------~~p~~~~~~~l~~~~ 401 (423)
.+....+.+.. .+..+.. ...+.|+.+ ++..+.+.+.-. .+.++.+|..+..+|
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 87543211111 1222222 223445553 455555443321 134578899999999
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 014502 402 RRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 402 ~~~g~~~~a~~~~~~m~~~g 421 (423)
...|++++|.+.|++-.+.|
T Consensus 441 ~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHCC-------------
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999876643
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=3.8e-14 Score=123.66 Aligned_cols=253 Identities=11% Similarity=0.016 Sum_probs=185.0
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAF 185 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~l 185 (423)
...+......+...|++++|...|++..+... .+...+..+..++...|++++|++.+++..+ .+-.|+ ...|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 34556667788888999999999998887632 2455888888888999999999999998886 332222 2347788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
...+...|++++|++.|++..+.... +..+|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999988886533 66788888899999999999999998887653 34456666666344455699
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCch----HHHHHHHHHHHHHhcCCh
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR---VDELEEQLETLTKCN-QSPEV----LLHFFSGIIRLYALSDRL 337 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~----~~~~~~~li~~~~~~g~~ 337 (423)
++|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+. ...+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999988753 3346677778888888888 777888888876532 11221 112377888889999999
Q ss_pred hHHHHHHHHHHhCCCCCCChHhHHHHHHHH
Q 014502 338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSY 367 (423)
Q Consensus 338 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 367 (423)
++|.+.|++..+ +.|+++..+..+....
T Consensus 238 ~~A~~~~~~al~--~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 238 VKADAAWKNILA--LDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHC---
T ss_pred HHHHHHHHHHHh--cCccHHHHHHHhhhhh
Confidence 999999999988 4466676666554433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-14 Score=122.02 Aligned_cols=225 Identities=8% Similarity=-0.031 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS--VN----VQ 215 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~ 215 (423)
....|..+...+...|++++|+..|++..+ .. .+..+|..+..++...|++++|.+.+++..+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 356788889999999999999999999987 33 77788889999999999999999999988775321 12 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC 295 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 295 (423)
+|..+...|.+.|++++|.+.|++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 8888889999999999999999988874 3553 34566788899999999988853 335567788888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-
Q 014502 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD- 374 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~- 374 (423)
..|++++|...++++.+.. |+... +|..+...|...|++++|...+++..+. .|+++..+..+...+.+.|+.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA--PEDAR-GYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cccHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999988744 44322 2788888899999999999999998874 4566888888888888888885
Q ss_pred hHHHHHHHHh
Q 014502 375 RLDLFLDHIK 384 (423)
Q Consensus 375 ~~~~~~~~~~ 384 (423)
+...+.+.+.
T Consensus 226 A~~~~~~a~~ 235 (258)
T 3uq3_A 226 ALETLDAART 235 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666655554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3.2e-14 Score=119.93 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
+...+..+...+...|++++|...|++..+. -+.+...+..+...+.+.|++++|+..+++..+..+. +...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4445555555555555555555555555431 1223444555555555555555555555555554322 444555555
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502 222 HGSLKA-----------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290 (423)
Q Consensus 222 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 290 (423)
..+.+. |++++|+..|++..+.. +-+...+..+...+...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 56666666665555432 1234455555555556666666666666655544 455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
..+|...|++++|...+++..+. .|+.... +..+...+...|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~-~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDL-RVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHH-HHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHH-HHHHHHHHHHccCHHHHHHHHHHH
Confidence 56666666666666666665552 2333222 455555556666666665555543
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.4e-12 Score=113.84 Aligned_cols=225 Identities=12% Similarity=-0.030 Sum_probs=181.2
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHh
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKT 181 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~ 181 (423)
.+..++..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+ .+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 356777888888888889999999998888743 56778888888888 8899999999988887 33 6777
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 182 YDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 182 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
+..+...|.. .+++++|++.|++..+.+ +...+..+...|.+ .+++++|++.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888888 889999999998888765 67778888888888 899999999998888765 456677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502 254 KVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFS 325 (423)
Q Consensus 254 ~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 325 (423)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ | ... +.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a--~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGG--CF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHH--HH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHH--HH
Confidence 77777777 889999999999888764 45677778888888 889999999999888754 3 222 66
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCC
Q 014502 326 GIIRLYAL----SDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 326 ~li~~~~~----~g~~~~a~~~~~~m~~~~ 351 (423)
.+...|.. .+++++|.+.|++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77778887 888999999998888765
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=4e-14 Score=119.28 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=125.6
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 455566667777777777777777777766653 2256667777777777777777777777766521 2344566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 186 ISGFSSL-----------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK 254 (423)
Q Consensus 186 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 254 (423)
...+.+. |++++|++.|++..+..+. +...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6677777 7777777777777766433 56667777777777777777777777776655 56677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (423)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777642 3355667777777777777777777776653
No 39
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.3e-12 Score=125.70 Aligned_cols=339 Identities=9% Similarity=0.048 Sum_probs=237.3
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
+...|..++...+.|++++|..+ ++++....+.+...|...+..+.+.|++++|..+|++.... .|+...|...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~----~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKT----YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHH----HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 57788888887788999999999 67787777778999999999999999999999999999986 4688888888
Q ss_pred HHHH-HccCCHHHHHH----HHHHHHhcCCCCC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 014502 150 ICAC-LCSGDVVTALS----LFEIMVSSEEYKP-NSKTYDAFISGFSS---------LGNVDAMNKWYAANIAAGFSVNV 214 (423)
Q Consensus 150 i~~~-~~~g~~~~A~~----~~~~m~~~~~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~ 214 (423)
+... ...|++++|.+ +|+......|..| +...|...+....+ .|+++.|.++|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677777665 7777765445554 45677777776654 68899999999999873211112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHH----------------------------------------------
Q 014502 215 QTYESLIHGS-------------LKARDFDSVDR---------------------------------------------- 235 (423)
Q Consensus 215 ~~~~~li~~~-------------~~~g~~~~a~~---------------------------------------------- 235 (423)
..|....... .+.++++.|..
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3333221100 01223333333
Q ss_pred --------------HHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCccCHHhH
Q 014502 236 --------------FYEEMMSLGIIPSIPILEKVLEGLCA-------RRKLD-------RVKSFLKFLLGGGWKINENMA 287 (423)
Q Consensus 236 --------------~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~~~~ 287 (423)
+|++..... +-+...|......+.+ .|+++ +|..++++..+.-.+.+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 333333221 2234455555555554 68876 888999988863234467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH-
Q 014502 288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS- 366 (423)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~- 366 (423)
..++..+.+.|++++|..+|+++.+. .|+..+.+|...+..+.+.|++++|.++|++..+. .|.+...+......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 88888899999999999999998884 45543223888888888899999999999998874 23334444332222
Q ss_pred Hhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 367 YFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
+...|+.+ +...|.+.++. .+-++..|..++..+.+.|+.++|..+|++....
T Consensus 401 ~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 33567775 56666666653 2335788999999999999999999999988764
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.7e-13 Score=116.86 Aligned_cols=197 Identities=10% Similarity=0.028 Sum_probs=86.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
|..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|++++|.+.++++.+.... +...+..+...|.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 116 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence 333444444444444444444444331 1223334444444444444444444444444433211 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 304 (423)
..|++++|.+.|+++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 44455555444444443222222 2334444444445555555555555444432 123444445555555555555555
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 305 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
..++.+.+.. |+.... +..+...+...|+.++|.+.++++.+
T Consensus 196 ~~~~~~~~~~--~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG--GQNARS-LLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS--CCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--cCcHHH-HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554422 222111 44445555555555555555555544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=3.5e-13 Score=116.12 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=139.3
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+. .+.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 4556666777777777777777777776653 235667777777777777777777777777652 1335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.+...|++++|.++++++.+.+..| +...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776622233 45566677777777777777777777776643 334666777777777778888
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
+|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887777653 345666777777777788888888888877764
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=4.7e-13 Score=112.88 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 223 (423)
..|..+...+...|++++|.+.|++..+. .+.+...+..+...+...|++++|.+.+++..+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 34444445555555555555555544431 122334444455555555555555555555444321 134445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 224 SLKA-RDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 224 ~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555544222222 3344445555555555555555555554432 223445555555555555555
Q ss_pred HHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 302 ELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+|...++++.+.. | +.... +..+...+...|+.+++...++.+.+
T Consensus 165 ~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV--EVLQADD-LLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--CSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555432 2 11111 44445555555555555555555544
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.3e-14 Score=125.14 Aligned_cols=219 Identities=11% Similarity=-0.049 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCC----CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502 83 SSSPKKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (423)
.+++++|+..| +++..... .+..++..+...+...|++++|...|++..+.. +.+..+|..+...+...|+
T Consensus 18 ~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARM----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHH----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHH----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 35556666663 33333321 134556666666666666666666666665542 2245566666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
+++|.+.|++..+. .+.+..++..+..++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++
T Consensus 93 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666666666552 12234555566666666666666666666665542 333333333344445566666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 239 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+..... +++...+. ++..+...++.++|...+++........ +..++..+...|.+.|++++|...+++..+
T Consensus 169 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554432 22222222 4444555555556666655554432110 134455555555566666666666665555
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=6.8e-14 Score=119.75 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=81.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
|..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++..+... .+..++..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 333344444444444444444444331 122333444444444444444444444444443321 13344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444332 2233444444444444555555555555444431 2234445555555555555555555
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.++++.+.. |+... ++..+...|...|++++|.+.+++..+
T Consensus 181 ~~~~~~~~~--~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQD--PGHAD-AFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHC--TTCHH-HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC--cccHH-HHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555554432 22111 145555555555555555555555554
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=5.6e-13 Score=112.44 Aligned_cols=208 Identities=9% Similarity=-0.070 Sum_probs=154.6
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 56677778888888888888888888877653 235677888888888888888888888887762 234566777788
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 187 SGFSSL-GNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 187 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
..+... |++++|.+.++++.+.+..| +...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 888888 88888888888887732223 35677778888888888888888888877653 3346777888888888888
Q ss_pred HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 265 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.. |+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~ 216 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCH
Confidence 88888888888775321456667777777788888888888888877633 5443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.6e-13 Score=123.86 Aligned_cols=251 Identities=10% Similarity=0.020 Sum_probs=175.9
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
+..+|..+...+.+.|++++|++.|++..+... -+...|+.+..++...|+ +++|+..|++..+.. +-+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 355677777777788888888888888777532 256677888888888886 888888888877621 3356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRK 264 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~ 264 (423)
..++...|++++|+..|++..+.... +...|..+..++.+.|++++|++.|+++.+.. +-+...|+.+...+.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 78888888888888888888877544 67778888888888888888888888887754 3356677777777777 555
Q ss_pred HHHH-----HHHHHHHHhCCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC--
Q 014502 265 LDRV-----KSFLKFLLGGGWKINENMAQKLVKCYCELG--RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-- 335 (423)
Q Consensus 265 ~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-- 335 (423)
.++| ...+++.+... +-+...|..+...+.+.| ++++|.+.+.++ + ..|+.... +..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~a-l~~La~~~~~~~~~ 325 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYL-IAFLVDIYEDMLEN 325 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHH-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHH-HHHHHHHHHHHhcc
Confidence 4666 46777777642 234667777777777777 577788777776 3 33444322 667777777764
Q ss_pred -------ChhHHHHHHHHH-HhCCCCCCChHhHHHHHHHHhh
Q 014502 336 -------RLDDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFR 369 (423)
Q Consensus 336 -------~~~~a~~~~~~m-~~~~~~~~~~~~~~~l~~~~~~ 369 (423)
..++|.++++++ .+ +.|.....|..+...+..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 247788888887 55 445556777666655554
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=9.2e-13 Score=114.82 Aligned_cols=228 Identities=8% Similarity=-0.055 Sum_probs=116.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCAR 262 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~ 262 (423)
....+...|++++|++.|++..+.... +...+..+...|...|++++|++.+++..+....|+ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444455555555555554444221 233444444455555555555555555444221111 22344555555555
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502 263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (423)
Q Consensus 263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~ 342 (423)
|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+. .|+.... |..+...+...+++++|.+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~-~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKV-FYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHH-HHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55555555555555432 223345555556666666666666666655553 2333221 3344412223346666666
Q ss_pred HHHHHHhCCCCCCChHhHHHHHHHHhhccc---c-chHHHHHHHHhCC-Cccc------HHHHHHHHHHHHhcCChhHHH
Q 014502 343 SVGRMGKQGLSFKSAEDVEMVICSYFRCAA---Y-DRLDLFLDHIKGS-YKLR------RATYDFLVAGYRRAGLSGKLD 411 (423)
Q Consensus 343 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~ 411 (423)
.|++..+ ..|.++..+..+...+...|+ . ++...+.+.+... -.|+ ...|..+...|.+.|++++|.
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655 234445555555555555554 3 2344444443221 1122 256777888888888888888
Q ss_pred HHHHHHHh
Q 014502 412 SVINEMKF 419 (423)
Q Consensus 412 ~~~~~m~~ 419 (423)
+.+++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887754
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.7e-13 Score=117.28 Aligned_cols=203 Identities=10% Similarity=0.022 Sum_probs=145.3
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
.....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+. .+.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence 355667777888888888888888888887753 336778888888888888888888888888762 23456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 8888888899999888888887653 367778888888888899999999888887653 34577788888888889999
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999998887753 3457788888888999999999999999888743
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.5e-13 Score=120.01 Aligned_cols=242 Identities=10% Similarity=-0.059 Sum_probs=183.4
Q ss_pred HhcCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502 118 SGKVQNVPFAMHVFTSMEAQGIK---PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (423)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 194 (423)
+...|++++|...|+++.+.... .+..+|..+..++...|++++|...|++..+. .+.+..+|..+...+...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccC
Confidence 34568899999999999886421 24668889999999999999999999999873 23467889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
+++|.+.|++..+.... +..++..+...|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++
T Consensus 93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999887533 67889999999999999999999999998753 5544445555566777999999999988
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV---LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
..... +++...+ .++..+...++.++|...++...+.. |.. ...+|..+...|...|++++|...|++..+.
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 244 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 77653 3343344 36777788888889999998886633 321 1233788889999999999999999998874
Q ss_pred CCCCChHhHHHHHHHHhhcccc
Q 014502 352 LSFKSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~~~~ 373 (423)
.|.+. .....++...|+.
T Consensus 245 -~p~~~---~~~~~~~~~l~~~ 262 (275)
T 1xnf_A 245 -NVHNF---VEHRYALLELSLL 262 (275)
T ss_dssp -CCTTC---HHHHHHHHHHHHH
T ss_pred -CchhH---HHHHHHHHHHHHH
Confidence 33332 2334445555555
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1e-11 Score=108.35 Aligned_cols=223 Identities=8% Similarity=-0.003 Sum_probs=179.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTY 217 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 217 (423)
++.++..+...+...|++++|++.|++..+ +-+...+..+...|.. .+++++|.++|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 667888888889999999999999998887 2455677778888888 899999999999988875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHH
Q 014502 218 ESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQK 289 (423)
Q Consensus 218 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 289 (423)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 899999999999888765 67788888888888 899999999999988865 5567777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCChHhHH
Q 014502 290 LVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL----SDRLDDVEYSVGRMGKQGLSFKSAEDVE 361 (423)
Q Consensus 290 li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 361 (423)
+...|.. .+++++|...+++..+.+. ... +..+...|.. .+++++|...|++..+.+ ++..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~ 222 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG--CFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCF 222 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH--HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHH
Confidence 8888887 8899999999998887541 223 6677888888 889999999998888754 277777
Q ss_pred HHHHHHhh----ccccc-hHHHHHHHHhCC
Q 014502 362 MVICSYFR----CAAYD-RLDLFLDHIKGS 386 (423)
Q Consensus 362 ~l~~~~~~----~~~~~-~~~~~~~~~~~~ 386 (423)
.+...|.. .++.+ +.+.+.+.++.+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888877 77774 566666666543
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=7.8e-12 Score=118.20 Aligned_cols=352 Identities=8% Similarity=-0.121 Sum_probs=224.0
Q ss_pred ccccHHHHHHHhcCCc-hhHHHHHHHhhh----c---cCCc-ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-
Q 014502 37 VSSSNPLISRLLQVPV-SQIKTTLDSVDI----F---AFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE- 105 (423)
Q Consensus 37 ~~~~~~ll~~l~~~~~-~~~~~~~~~m~~----~---g~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~- 105 (423)
...||.+-......|. .++.+.+.+..+ . -..| ...+|+.+-.. ...|++++|...++...+-......
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3467766556666664 445555554422 1 1123 35678777777 6899999999997654443322221
Q ss_pred ---CCHhHHHHHHHHHhc--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhcCCCCC
Q 014502 106 ---SCLDEYACLIALSGK--VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVSSEEYKP 177 (423)
Q Consensus 106 ---~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p 177 (423)
....++..+..++.+ .+++++|...|++..+... -++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Cc
Confidence 235667666555544 4579999999999988632 245555555544 445678889999999887621 33
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 178 NSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 178 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
+..++..+...+.. .+++++|.+++++...... .+..++..+...|.+.|++++|.+.|++..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45566656555544 4567899999999887753 377889999999999999999999999988754 23455666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 254 KVLEGLCAR-------------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 254 ~li~~~~~~-------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
.+...|... +..+.|...+++..+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 665554322 23567777888777653 3345678889999999999999999999998865
Q ss_pred CCCchHHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCC----------------------CCCCChHhHHHHHHHHhhcc
Q 014502 315 QSPEVLLHFFSGIIR-LYALSDRLDDVEYSVGRMGKQG----------------------LSFKSAEDVEMVICSYFRCA 371 (423)
Q Consensus 315 ~~p~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~----------------------~~~~~~~~~~~l~~~~~~~~ 371 (423)
..+.....++..+.. .+...|+.++|+..|++..+.. ..|+++.+|..+...|...|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 544433222333322 2356789999999888776532 23667889999999999999
Q ss_pred ccc-hHHHHHHHHhCC-CcccHHHH
Q 014502 372 AYD-RLDLFLDHIKGS-YKLRRATY 394 (423)
Q Consensus 372 ~~~-~~~~~~~~~~~~-~~p~~~~~ 394 (423)
+.+ |.+.|.+.++.+ ..|+..+|
T Consensus 445 ~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HCC----------------------
T ss_pred CHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 995 788888777654 23444433
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.3e-12 Score=119.25 Aligned_cols=247 Identities=13% Similarity=0.029 Sum_probs=200.7
Q ss_pred hhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAVFNSL 149 (423)
Q Consensus 72 ~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 149 (423)
..|+.+-.. ...|++++|++. +++.....+.+..+|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~----~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKL----TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHH----HHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 344444444 578999999999 567777777889999999999999997 99999999999987433 77899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-AR 228 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g 228 (423)
..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|++.|+++.+.... +...|+.+...+.+ .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999998732 446788999999999999999999999999998654 78999999999999 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC---
Q 014502 229 DFDSV-----DRFYEEMMSLGIIPSIPILEKVLEGLCARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG--- 298 (423)
Q Consensus 229 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--- 298 (423)
..++| ++.|++..+.. +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 48888887754 334678888888888888 689999999988 43 3456778889999998874
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHH
Q 014502 299 ------RVDELEEQLETL-TKCNQSPEVLLHFFSGIIRLYA 332 (423)
Q Consensus 299 ------~~~~a~~~~~~~-~~~~~~p~~~~~~~~~li~~~~ 332 (423)
..++|..+++++ .+ ..|..... |..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~-w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE--KDTIRKEY-WRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT--TCGGGHHH-HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH--hCchhHHH-HHHHHHHHH
Confidence 258999999998 66 45765543 666655443
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=8e-12 Score=126.46 Aligned_cols=253 Identities=10% Similarity=0.124 Sum_probs=192.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL 192 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 192 (423)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhC
Confidence 356677778888888888877531 2233344433 5677888888877552 356788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502 193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272 (423)
Q Consensus 193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 272 (423)
|++++|+..|.+. -|...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999998663 377788889999999999999999998776654 33333445888899998888644442
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 273 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
+ .++...+..+...|...|++++|..+|..+. . |..+...|.+.|++++|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------n--y~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------N--FGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------H--HHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 2 3455667778899999999999999999863 2 8999999999999999999998762
Q ss_pred CCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
++.+|..+..+|...|+++.+...... +..++..+..++..|.+.|.+++|+.+++.-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHh----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 388999999999988887644443321 3456777889999999999999999998765
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=1.5e-11 Score=124.51 Aligned_cols=265 Identities=9% Similarity=0.062 Sum_probs=156.1
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+..+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++ . .++....+.++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELI 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHH
Confidence 3445555555555555555555555332 1455555555555555555555555554443 1 12222222355
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 5555555555322221 1 234444555555555566666666655552 25555566666666666
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
+|.+.+++. .+..+|..+..+|...|++..|......+. ..|+ . +..++..|.+.|.+++|+.+++.
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii---v~~d--e--Leeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--E--LEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh---cCHH--H--HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555544 233555555555555666555555444321 1222 2 67889999999999999999988
Q ss_pred HHhCCCCCCChHhHHHHHHHHhhccc--c-chHHHHHHHHhCCCcc------cHHHHHHHHHHHHhcCChhHHHHH
Q 014502 347 MGKQGLSFKSAEDVEMVICSYFRCAA--Y-DRLDLFLDHIKGSYKL------RRATYDFLVAGYRRAGLSGKLDSV 413 (423)
Q Consensus 347 m~~~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~ 413 (423)
... ..+.+...|+-+...|++..- . |.++.|..... ++| +...|.-++-.|.+.|+++.|...
T Consensus 1306 aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1306 ALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred Hhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 765 556678888888888887642 2 45666665433 222 467899999999999999999843
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=4.3e-13 Score=123.96 Aligned_cols=289 Identities=9% Similarity=-0.036 Sum_probs=210.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCC----HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLIC 151 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 151 (423)
...|++++|...|+ +.....+.+ ..++..+...+...|++++|...|++.... +-.| ...++..+..
T Consensus 20 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 20 CKSGDCRAGVSFFE----AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHTTCHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHH----HHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 68999999999954 444444444 467889999999999999999999886542 2122 2457888899
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMNKWYAANIA 207 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~ 207 (423)
.|...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.+.+++...
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999887652111122 3478888899999999 9999999887654
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 208 A----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 208 ~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
. +..| ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 1111 245678888999999999999999988764210 122 23688888899999999999999998865
Q ss_pred C----CCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 278 G----GWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 278 ~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
. +..+. ..++..+...|...|++++|...+++..+... .+.....++..+...|...|++++|.+.+++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 11111 45778889999999999999999998765211 1112223378889999999999999999988765
Q ss_pred C----CCCCCChHhHHHHHHHHhhcccc
Q 014502 350 Q----GLSFKSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 350 ~----~~~~~~~~~~~~l~~~~~~~~~~ 373 (423)
. +..+....++..+...+...|+.
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 22222345566777778777766
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.3e-11 Score=109.82 Aligned_cols=217 Identities=6% Similarity=0.015 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh-------cCCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSG-------KVQNV-------PFAMHVFTSMEAQGIKPDSAVFNSLICA 152 (423)
Q Consensus 87 ~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~ 152 (423)
++|..+ |++.....+.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..
T Consensus 33 ~~a~~~----~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFA----YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455555 44444445556666766666654 24664 6677777666652112244566666666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCC-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPN-SK-TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL-KARD 229 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~ 229 (423)
+...|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|.++|++..+... .+...|........ ..|+
T Consensus 109 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 6666777777777776665 2343 22 566666666666666666666666665432 23333332222211 2466
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-Ccc--CHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-WKI--NENMAQKLVKCYCELGRVDELEEQ 306 (423)
Q Consensus 230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~ 306 (423)
+++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666655432 2234555555666666666666666666666542 233 244555555666666666666666
Q ss_pred HHHHHh
Q 014502 307 LETLTK 312 (423)
Q Consensus 307 ~~~~~~ 312 (423)
++.+.+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=1.5e-11 Score=109.51 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHhcCCCCC-CHHhHHHHHHHH
Q 014502 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------SGDV-------VTALSLFEIMVSSEEYKP-NSKTYDAFISGF 189 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~ 189 (423)
++|..+|++..... +-++..|..++..+.. .|++ ++|..+|++..+ .+.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHH
Confidence 67889999988753 3477889888887763 5886 899999999986 2345 456899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDR 267 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~ 267 (423)
.+.|++++|.++|++..+.... +.. .|..+...+.+.|++++|.++|++..+.. +++...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999985322 333 89999999999999999999999998764 334445544433322 3699999
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
|.++|++..+. .+.+...|..++..+.+.|++++|..+|++..... ..|+....+|..++..+...|+.++|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999875 23467889999999999999999999999999863 45653444489999999999999999999999
Q ss_pred HHhC
Q 014502 347 MGKQ 350 (423)
Q Consensus 347 m~~~ 350 (423)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=1.1e-12 Score=121.56 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=140.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCC-CCCHHhH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEY-KPNSKTY 182 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~~~ 182 (423)
+..+...+...|++++|...|++..+.+.. +. ..|..+...|...|++++|...+++..+. .+- +....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 444555566666666666666666654221 22 35666666666667777776666655431 010 1123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAA----G-FSVNVQTYESLIHGSLKARD-----------------FDSVDRFYEEM 240 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m 240 (423)
..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66666777777777777777665543 1 01123456666677777777 77777776665
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 241 MSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-IN----ENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 241 ~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
.+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 331 1111 1235666667777777777777777776553110 11 225666777788888888888887776
Q ss_pred HhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 311 TKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 311 ~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+... .+.....++..+...|...|++++|...+++..+
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54211 1111122366777778888888888888777654
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.7e-12 Score=116.30 Aligned_cols=266 Identities=9% Similarity=-0.010 Sum_probs=188.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCC----HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLIC 151 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 151 (423)
...|++++|...|+ +.....+.+ ..++..+...+...|++++|.+.+++..+. +-.| ...++..+..
T Consensus 16 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 16 CKSGDCRAGVSFFE----AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHTTCHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHH----HHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 58899999999954 444444434 467888899999999999999999886542 2111 2457888888
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMNKWYAANIA 207 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~ 207 (423)
.+...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998886542111122 3377788888888898 8888888887654
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 208 A----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 208 ~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
. +..+ ...++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1111 2446777888889999999999998887542 1111 123677788888889999999999888765
Q ss_pred CC----Ccc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 278 GG----WKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 278 ~g----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.. ..+ ...++..+...|...|++++|...+++..+.. ..+.....++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 31 111 14567778888889999999999888876521 11222222377788888999999999999988876
Q ss_pred C
Q 014502 350 Q 350 (423)
Q Consensus 350 ~ 350 (423)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 3
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=2.3e-12 Score=119.04 Aligned_cols=304 Identities=14% Similarity=0.013 Sum_probs=200.5
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCC-
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKP- 177 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p- 177 (423)
+....+......+...|++++|...|++..+.+.. + ..+|..+...+...|++++|...+++.... .+-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45566777888888999999999999998876322 3 357888888899999999999998886541 11122
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVN----VQTYESLIHGSLKARD--------------------FDS 232 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~ 232 (423)
...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244677788888899999999999887765311 011 4477778888888888 888
Q ss_pred HHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccC----HHhHHHHHHHHHhcCCHHH
Q 014502 233 VDRFYEEMMS----LGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KIN----ENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 233 a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~ 302 (423)
|.+.+++..+ .+..|. ..++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 8888877643 221121 24577777788888888888888888765311 011 2367777788888888888
Q ss_pred HHHHHHHHHhCCCCC---chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCChHhHHHHHHHHhhccccc-
Q 014502 303 LEEQLETLTKCNQSP---EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL----SFKSAEDVEMVICSYFRCAAYD- 374 (423)
Q Consensus 303 a~~~~~~~~~~~~~p---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~l~~~~~~~~~~~- 374 (423)
|...+++..+..... .....++..+...|...|++++|...+++..+... .+..+..+..+...|...|+.+
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 888888887732111 11122367778888888888888888887765311 1111345566677777777774
Q ss_pred hHHHHHHHHhCCCccc-----HHHHHHHHHHHHhcCChhHH
Q 014502 375 RLDLFLDHIKGSYKLR-----RATYDFLVAGYRRAGLSGKL 410 (423)
Q Consensus 375 ~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a 410 (423)
+...+.+.+...-... ..++..+...+...|+....
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 4555555554322222 23455555556555555443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.4e-12 Score=120.89 Aligned_cols=266 Identities=9% Similarity=-0.034 Sum_probs=201.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCH----hHHHHHHHHHhcCCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI-KPDSAVFNSLIC 151 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~ 151 (423)
...|++++|...| ++.....+.+. .+|..+...|...|++++|...|++..+. +- +.....+..+..
T Consensus 59 ~~~g~~~~A~~~~----~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 59 CNAGDCRAGVAFF----QAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHTTCHHHHHHHH----HHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHH----HHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 6899999999995 44444444444 57889999999999999999999987653 11 223467888999
Q ss_pred HHHccCCHHHHHHHHHHHHhcC---C-CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC--
Q 014502 152 ACLCSGDVVTALSLFEIMVSSE---E-YKPNSKTYDAFISGFSSLGN-----------------VDAMNKWYAANIAA-- 208 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~---~-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~-- 208 (423)
.|...|++++|...+++..+.. + .+....++..+...|...|+ +++|++.+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876521 1 11224578888899999999 99999999876542
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 209 --GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (423)
Q Consensus 209 --~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 280 (423)
+-.+ ...++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1111 235788888999999999999999998865210 112 23688888999999999999999998875321
Q ss_pred c-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 281 K-----INENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 281 ~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
. ....++..+...|...|++++|...+++..+... .+.....++..+...|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1245778889999999999999999998765211 11122223788999999999999999999998874
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.6e-12 Score=115.54 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=116.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAA-------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL------GIIP 247 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p 247 (423)
++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+. +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555544444444431 11112334444445555555555555555444331 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 014502 248 -SIPILEKVLEGLCARRKLDRVKSFLKFLLGG------GW-KINENMAQKLVKCYCELGRVDELEEQLETLTKC------ 313 (423)
Q Consensus 248 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 313 (423)
...++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|...++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1234455555555555555555555555432 11 122335556666666677777777776666553
Q ss_pred CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCChHhHHHH------HHHHhhccccc-hHHHH
Q 014502 314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ-------GLSFKSAEDVEMV------ICSYFRCAAYD-RLDLF 379 (423)
Q Consensus 314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~l------~~~~~~~~~~~-~~~~~ 379 (423)
+..|... .++..+...|...|++++|.+.+++..+. ...+.....+..+ ...+...+... +...+
T Consensus 189 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 189 PDDPNVA-KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp TTCHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122222 22666777777777777777777776642 1111112222222 22222223332 22333
Q ss_pred HHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 380 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..... ..+.+..++..+..+|.+.|++++|.+++++..+
T Consensus 268 ~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33222 2234577899999999999999999999998754
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=3.5e-12 Score=114.35 Aligned_cols=278 Identities=14% Similarity=0.051 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCC-CHHh
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKP-NSKT 181 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~ 181 (423)
.+......+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++..+. .+..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455566666677777666666654211 2 245566666666666666666666665431 01011 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGF-SVN----VQTYESLIHGSLKARD--------------------FDSVDRF 236 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 236 (423)
+..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55555666666666666666665443210 011 2245555555555555 5555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 014502 237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCN- 314 (423)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 314 (423)
+++..+.. ...+.. ....++..+...+...|++++|...+++..+..
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 54432210 000000 011233444444444455555544444433210
Q ss_pred --CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC--
Q 014502 315 --QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG----LSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG-- 385 (423)
Q Consensus 315 --~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-- 385 (423)
..+.....++..+...|...|++++|...+++..+.. ..+.....+..+...+...|+.+ +...+.+.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0011111124444555555555555555555443211 00001233344455555555553 33333333221
Q ss_pred --CCc-ccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 386 --SYK-LRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 386 --~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+.. ....++..+...|.+.|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 111 1245778889999999999999999988765
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.1e-12 Score=120.06 Aligned_cols=206 Identities=10% Similarity=-0.032 Sum_probs=142.1
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQNV-PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY 175 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 175 (423)
++........+...+..+...+...|++ ++|.+.|++..+.. +-+...|..+..+|...|++++|.+.|++..+ .
T Consensus 91 l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~ 166 (474)
T 4abn_A 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---H 166 (474)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---T
T ss_pred HHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h
Confidence 4444444445677777777888888888 88888887777653 22466777778888888888888888887776 2
Q ss_pred CCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHH
Q 014502 176 KPNSKTYDAFISGFSSL---------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA--------RDFDSVDRFYE 238 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~ 238 (423)
.|+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |++++|++.|+
T Consensus 167 ~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 46667777777777777 7777888877777776433 566777777777777 77777777777
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 239 EMMSLGII---PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET 309 (423)
Q Consensus 239 ~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (423)
+..+.. + -+...|..+...|...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+.+
T Consensus 246 ~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 246 QAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776642 1 256667777777777777777777777776643 23455666666677777777666654443
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=8.7e-13 Score=117.18 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=128.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-----C
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----E 174 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~ 174 (423)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666666552 112234456666666666777777766666655410 1
Q ss_pred C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 014502 175 Y-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL--- 243 (423)
Q Consensus 175 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 243 (423)
- +....++..+...+...|++++|.+.+++..+. +-.| ....+..+...|...|++++|.+.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 122345666666677777777777777666543 1111 3445666666777777777777777666542
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCccCH-------HhHHHHHHHHHhcCCHHHHHH
Q 014502 244 ---GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG-------GWKINE-------NMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 244 ---~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~-------~~~~~li~~~~~~g~~~~a~~ 305 (423)
+..|+ ..++..+...+...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 335666666777777777777777776642 111111 122222333334445555555
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.++..... .|... .++..+...|...|++++|.+.|++..+
T Consensus 266 ~~~~~~~~--~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD--SPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555442 23322 2377778888888888888888877665
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=1.7e-11 Score=100.13 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
+.+|..+...|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 33444444444444555555555544444321 13344444444444444444444444444431 1122333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
.+...++++.|.+.+.+....... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 444444444444444444443211 33444444444444444444444444444322 1223344444444444444444
Q ss_pred HHHHHHHHHh
Q 014502 268 VKSFLKFLLG 277 (423)
Q Consensus 268 a~~~~~~~~~ 277 (423)
|.+.|++.++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.5e-11 Score=100.39 Aligned_cols=165 Identities=14% Similarity=0.058 Sum_probs=73.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (423)
Q Consensus 179 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (423)
...|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|...++...... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 334444444444444444444444444443322 34444444444444444444444444443322 1223334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChh
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 338 (423)
+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+.... |..+...|...|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~-~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRA-YQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhH-HHHHHHHHHHCCCHH
Confidence 444444554444444444431 223344444444555555555555555554442 2322211 444455555555555
Q ss_pred HHHHHHHHHHh
Q 014502 339 DVEYSVGRMGK 349 (423)
Q Consensus 339 ~a~~~~~~m~~ 349 (423)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=4.4e-11 Score=109.91 Aligned_cols=161 Identities=8% Similarity=0.031 Sum_probs=67.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHH
Q 014502 151 CACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GF----SVNVQTYESL 220 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~----~~~~~~~~~l 220 (423)
..+...|++++|...|++..+...-.++ ..++..+...|...|++++|.+.+.+..+. .. .....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344445555555555544331000111 234444444555555555555554444332 00 0012344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-ccCHHhHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GW-KINENMAQKL 290 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~~l 290 (423)
...|...|++++|.+.|++..+. +-.+. ..++..+...|...|++++|.+.+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 44555555555555554444321 10000 123444444455555555555555544431 11 2223344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 014502 291 VKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~ 311 (423)
...|.+.|++++|...+++..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555554443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=9.9e-12 Score=117.44 Aligned_cols=215 Identities=11% Similarity=-0.002 Sum_probs=169.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV-VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 201 (423)
+++++.+.+++..... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3566777777766542 33778888899999999999 99999999887632 33477888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 014502 202 YAANIAAGFSVNVQTYESLIHGSLKA---------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--------RK 264 (423)
Q Consensus 202 ~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~ 264 (423)
|++..+. .|+...+..+...|... |++++|++.|++..+.. +-+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998876 46678888888888888 99999999999887754 34577888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502 265 LDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY 342 (423)
Q Consensus 265 ~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~ 342 (423)
+++|.+.+++..+.... .+...|..+..+|...|++++|.+.|++..+.. |+.... +..+...+...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a-~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEP-QQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999998885310 377788888899999999999999999888743 554432 7778888888888888887
Q ss_pred HHHH
Q 014502 343 SVGR 346 (423)
Q Consensus 343 ~~~~ 346 (423)
.+.+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1e-10 Score=107.41 Aligned_cols=231 Identities=5% Similarity=-0.068 Sum_probs=165.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI---IP-SIPILE 253 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~p-~~~~~~ 253 (423)
....+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|.+.+++..+. .. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999998764 1111 3467888889999999999999999887642 11 11 135688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchHHHHH
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFF 324 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~ 324 (423)
.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+. +..|.. ..++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence 8888899999999999999988753 1111 1247788899999999999999999987762 222433 3338
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCChHhHHHHHHHHhhcccc---c-hHHHHHHHHhCCCccc-HHHHHH
Q 014502 325 SGIIRLYALSDRLDDVEYSVGRMGKQGL---SFKSAEDVEMVICSYFRCAAY---D-RLDLFLDHIKGSYKLR-RATYDF 396 (423)
Q Consensus 325 ~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~~~~~p~-~~~~~~ 396 (423)
..+...|...|++++|...+++..+... .+.....+..+...+...|+. + +...+.+. +..|+ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 8899999999999999999988765321 111233356778888888873 2 33333332 33333 556788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 014502 397 LVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
+...|.+.|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=1.6e-09 Score=99.02 Aligned_cols=272 Identities=12% Similarity=0.001 Sum_probs=168.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHH
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA----VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYD 183 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~ 183 (423)
......+...|++++|...+++........+.. .++.+...+...|++++|.+.+++......-.++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566788888888887776643222222 45566667777888888888887765411001121 2355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 014502 184 AFISGFSSLGNVDAMNKWYAANIAA----GFS--V-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P--SIPIL 252 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~ 252 (423)
.+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6667778888888888888776643 211 2 2345566777788888888888888877543211 1 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHH
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQ----KLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFS 325 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~ 325 (423)
..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++........+. .....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7777778888889888888888764311111 11111 233447788999999999888766432211 1111256
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHH
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGKQ----GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI 383 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 383 (423)
.+...+...|++++|...+++..+. |..+.....+..+..++...|+.+ +...+.+.+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7778888999999999998887642 111111234556677777788774 455555544
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=3.3e-10 Score=106.30 Aligned_cols=48 Identities=17% Similarity=-0.050 Sum_probs=22.7
Q ss_pred CHhHHHHHHHHHhcCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 107 CLDEYACLIALSGKVQ-----NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++..+..|...+...+ ++++|...|++..+.|.. ..+..+...|...+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 4445555555333333 566666666666665422 24444444444433
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=1e-10 Score=101.96 Aligned_cols=169 Identities=13% Similarity=-0.007 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGG------G-WKINENMAQKLVKCYCELGRVDELEEQLETLTKC------NQSP 317 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p 317 (423)
++..+...+...|++++|.+.+++..+. . .+....++..+...|...|++++|...+++..+. +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444445555554444444332 0 1122334555556666666666666666665542 1122
Q ss_pred chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCChHhHHHHHHHHhhccccchHHHHHHHH------h
Q 014502 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ-------GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI------K 384 (423)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~ 384 (423)
.. ..++..+...|...|++++|...+++..+. ...+.....+..+...+...+.......+.... .
T Consensus 167 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 167 NV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 22 122566666666677777777666666542 122222334444444444333332222222221 1
Q ss_pred CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
...+....++..+..+|.+.|++++|..++++..+.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111224667889999999999999999999987653
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=8.6e-11 Score=110.29 Aligned_cols=308 Identities=13% Similarity=0.022 Sum_probs=163.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV---PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++.|++++|.+.| ++..+.+ +..++..|...|...|+. ++|...|++..+. ++..+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~----~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 14 LKRGDTVTAQQNY----QQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHH----HHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HhCCCHHHHHHHH----HHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 7899999999995 4444444 344555666677777877 8999999998864 6667777777555555
Q ss_pred -----CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCC-------------------
Q 014502 158 -----DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD---AMNKWYAANIAAGF------------------- 210 (423)
Q Consensus 158 -----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~------------------- 210 (423)
++++|+..|++..+ .|.. ..+..|...|...+..+ ++.+.+......|.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~-~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFA-NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHH-TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHH-CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 78899999999887 4322 24445555555443321 22222222222211
Q ss_pred -------------CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 014502 211 -------------SVNVQTYESLIHGSLKAR---DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR----RKLDRVKS 270 (423)
Q Consensus 211 -------------~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~ 270 (423)
..+...+..|...|.+.| ++++|++.|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 122335666666666677 7777777777776666 44455445555555443 57777777
Q ss_pred HHHHHHhCCCccCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC-----ChhHHHH
Q 014502 271 FLKFLLGGGWKINENMAQKLVKC-Y--CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-----RLDDVEY 342 (423)
Q Consensus 271 ~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-----~~~~a~~ 342 (423)
+|++.. . -+...+..+... | ...+++++|...|++..+.|. ... +..|-..|. .| ++++|.+
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A--~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRA--ELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHH--HHHHHHHHH-cCCCCCCCHHHHHH
Confidence 777766 2 234445555555 3 346777777777777766551 222 444555554 44 6777777
Q ss_pred HHHHHHhCCCCCCChHhHHHHHHHHhhc----cccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHHHH
Q 014502 343 SVGRMGKQGLSFKSAEDVEMVICSYFRC----AAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLDSV 413 (423)
Q Consensus 343 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 413 (423)
.|++.. +.++.....|...|... .+.+ +...+.+....| ++.....|...|.. ..+.++|...
T Consensus 309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 777655 23466666666666552 2332 455555555544 23445555555553 3467777777
Q ss_pred HHHHHhcC
Q 014502 414 INEMKFAE 421 (423)
Q Consensus 414 ~~~m~~~g 421 (423)
|+.-.+.|
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 77666555
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.7e-10 Score=92.46 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
.|..+...+...|++++|.+.++++.+. .+.+..++..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 4444555555556666666666555431 123444555555555556666666666555554431 2445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 304 (423)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 55566666655555554432 2334445555555555555555555555554432 223444555555555555555555
Q ss_pred HHHHHHHh
Q 014502 305 EQLETLTK 312 (423)
Q Consensus 305 ~~~~~~~~ 312 (423)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=4.6e-10 Score=94.96 Aligned_cols=207 Identities=10% Similarity=0.002 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL 220 (423)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 220 (423)
.|+..+......+...|++++|+..|++..+ ...+++...+..+..++...|++++|++.+++..+.... +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 3667888888888888888888888888876 222266677777888888888888888888888876533 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC---HHhHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKL 290 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l 290 (423)
...|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 888888888888888888887653 2233 34666667777788888888888888774 344 4566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
..+|...| ...++++...+.. +... |.... ....+.+++|...+++..+ +.|.++.....+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~--~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEK--YASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHH--HHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHH--HHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 66665443 3344554443211 1111 33322 3345567888888888877 4455565554443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=2.7e-09 Score=97.77 Aligned_cols=231 Identities=9% Similarity=0.011 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHh--cCCChhHHH---------HHHHHHHHCCCCCCH----H
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSG--KVQNVPFAM---------HVFTSMEAQGIKPDS----A 144 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~---------~~~~~m~~~g~~p~~----~ 144 (423)
..+++.++|.++++.+-..+..... ++...|-.++..-. -.+.+..+. +.++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 5788889998886554333322211 33444444443310 011111122 455554332111010 0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAA----GF-SV-NV 214 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~ 214 (423)
.+......+...|++++|+..|++..+...-.++ ..++..+...|...|++++|...+++..+. +- .+ ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 1222334455667777777777776542111122 235566666677777777777766665542 10 11 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccCH
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLG-----GGWKINE 284 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~ 284 (423)
.+++.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+ .. +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 45556666666666666666666655431 1111 112344455555555555555555555544 21 1123
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 285 NMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
.++..+...|.+.|++++|...+++..+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.4e-10 Score=92.81 Aligned_cols=163 Identities=13% Similarity=-0.010 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 189 (423)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34455555555666666666665555432 224555556666666666666666666665542 123445555555666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK 269 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 269 (423)
...|++++|.+.+++..+... .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666555432 245555666666666666666666666655543 234555666666666666666666
Q ss_pred HHHHHHHh
Q 014502 270 SFLKFLLG 277 (423)
Q Consensus 270 ~~~~~~~~ 277 (423)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=1e-09 Score=100.55 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=174.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----CHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGI-KP----DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-----NSK 180 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~ 180 (423)
|......+...|++++|...|++..+... .+ ...++..+...|...|++++|...+++..+...-.+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455567789999999999999876421 12 245788899999999999999999988765211111 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIP 250 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 250 (423)
+++.+...|...|++++|.+.|++..+. +.. ....+++.+...|...|++++|.+.|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7888999999999999999999987753 211 1245788889999999999999999998876 33 23367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHH
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKINENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHF 323 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~ 323 (423)
++..+...+.+.|++++|...+++..+.. .+.....+..+...|...++ +++|...+++ .+..|+.. ..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~-~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE-AC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH-HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH-HH
Confidence 78889999999999999999999987642 12223355666667777888 6777777765 23333332 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77899999999999999999998765
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=8.2e-11 Score=102.63 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=72.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhC---CC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHH
Q 014502 83 SSSPKKAQLVLEWRLDKMLKG---NE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ------GIKP-DSAVFNSLIC 151 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~---~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~ 151 (423)
.|++++|...++..++...+. .. ....++..+...+...|++++|...|++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 455555555544333322221 11 13445555566666666666666666555432 1111 2334555555
Q ss_pred HHHccCCHHHHHHHHHHHHhcC-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSE-----E-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------GFSV-NVQTYE 218 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~-----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~ 218 (423)
+|...|++++|.+.|++..+.. . .+....++..+...+...|++++|.+++++..+. +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5555555555555555554310 0 0112334444445555555555555555544432 0011 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 219 SLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m 240 (423)
.+...|.+.|++++|.+.+++.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444445555555444444
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2.9e-10 Score=112.01 Aligned_cols=164 Identities=11% Similarity=0.101 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
..+|+.+...|.+.|++++|++.|++..+. .| +..+|..+..+|.+.|++++|++.|++..+.... +...|+.+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 446666666666666666666666666552 23 3456666666666666666666666666655422 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
..|.+.|++++|++.|++..+.. +-+...|..+...+...|++++|.+.|++.++.. +-+...+..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 66666666666666666665532 2234556666666666666666666666665532 223455556666666666666
Q ss_pred HHHHHHHHHHh
Q 014502 302 ELEEQLETLTK 312 (423)
Q Consensus 302 ~a~~~~~~~~~ 312 (423)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=3.1e-10 Score=111.77 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=132.6
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAF 185 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l 185 (423)
+..+|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 567888888888888999999988888887632 25678888888888889999999888888762 34 46688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
..++.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 88888889999999988888876533 67788888888888999999999888887753 23467788888888888888
Q ss_pred HHHHHHHHHHHh
Q 014502 266 DRVKSFLKFLLG 277 (423)
Q Consensus 266 ~~a~~~~~~~~~ 277 (423)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=2.1e-09 Score=98.11 Aligned_cols=265 Identities=13% Similarity=0.027 Sum_probs=186.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCC-CH----hHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNES-CL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGI-KPD----SAVFNSLI 150 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li 150 (423)
...|++++|...++ +......+ +. .+++.+...+...|++++|.+.+++...... .++ ..++..+.
T Consensus 25 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAK----LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHH----HHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH----HHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 57899999999954 33333332 22 2567778888899999999999998765310 112 23466778
Q ss_pred HHHHccCCHHHHHHHHHHHHhc---CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 014502 151 CACLCSGDVVTALSLFEIMVSS---EEYK--P-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS----VNVQTYESL 220 (423)
Q Consensus 151 ~~~~~~g~~~~A~~~~~~m~~~---~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l 220 (423)
..+...|++++|...+++..+. .+.. | ...++..+...+...|++++|...+++....... ....++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 8899999999999999887642 1222 2 2345667788899999999999999988764321 124567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIP--SIPILE----KVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLV 291 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li 291 (423)
...+...|++++|...+++.....-.+ ...... ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 889999999999999999886531111 122211 23344778999999999999887643221 123466778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 292 KCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
..+...|++++|...++....... .+.....++..+...+...|+.++|...+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999998754211 1112212366778889999999999999988765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=1.9e-09 Score=91.09 Aligned_cols=200 Identities=11% Similarity=-0.021 Sum_probs=156.6
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDA 184 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ 184 (423)
.|+..+......+.+.|++++|...|++..+...+++...+..+..++...|++++|++.|++..+. .| +...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence 5678899999999999999999999999998764468888888999999999999999999999872 34 4568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEK 254 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 254 (423)
+...+...|++++|++.+++..+.... +. ..|..+...+.+.|++++|++.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999987433 44 55788888999999999999999999875 465 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
+...+... +..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+...
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 76666544 444556665543 23444554443 33456689999999999884 465543
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=1.6e-07 Score=91.50 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=83.4
Q ss_pred HHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC---hhHHHHHH
Q 014502 56 KTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN---VPFAMHVF 131 (423)
Q Consensus 56 ~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 131 (423)
...++.-....+ -|..+|..+|.. -+.+....+..+ ++++....+.....|..-+..-.+.++ ++.+..+|
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~v----yEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYET----FDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334444433333 467777777777 455677777777 556666666666777777777777777 77777777
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHhcCCC-CCC-HHhHHHHHHHHHh---------
Q 014502 132 TSMEAQG-IKPDSAVFNSLICACLCSGDV--------VTALSLFEIMVSSEEY-KPN-SKTYDAFISGFSS--------- 191 (423)
Q Consensus 132 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~--------- 191 (423)
++..... .+|++..|...+.-..+.++. +...++|+.....-|. .|+ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7777653 136777777766655544432 2334666665543455 443 3455555544321
Q ss_pred cCCHHHHHHHHHHHH
Q 014502 192 LGNVDAMNKWYAANI 206 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~ 206 (423)
.++++.+.++|++.+
T Consensus 207 q~~~~~~R~iy~raL 221 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHH
Confidence 223445555555554
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=4.1e-07 Score=88.71 Aligned_cols=373 Identities=8% Similarity=0.012 Sum_probs=225.9
Q ss_pred CCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCC---HHHHHHHHHHHHHHHhhCCC--C
Q 014502 34 STSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSS---PKKAQLVLEWRLDKMLKGNE--S 106 (423)
Q Consensus 34 ~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~---~~~a~~~~~~~~~~m~~~~~--~ 106 (423)
.-+...|..++..+-+.+ ...+..+++.+... ++.+...|...+.. .+.++ .+.+..+ |++-..... |
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l----feRal~~~~~~~ 137 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV----LARCLSKELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH----HHHHTCSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH----HHHHHHhcCCCC
Confidence 345567777777766655 44567888888654 34456778888887 77777 8899888 556655553 7
Q ss_pred CHhHHHHHHHHHhcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCCHHHHHHHH
Q 014502 107 CLDEYACLIALSGKVQNV--------PFAMHVFTSMEA-QGI-KPD-SAVFNSLICACLC---------SGDVVTALSLF 166 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~ 166 (423)
++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+..... .++++.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 888888877766555443 344577777554 465 554 5688888875442 33466777788
Q ss_pred HHHHhcCCCCCCHHhHH---HHHHHHH----------hcCCHHHHHH---------------------------------
Q 014502 167 EIMVSSEEYKPNSKTYD---AFISGFS----------SLGNVDAMNK--------------------------------- 200 (423)
Q Consensus 167 ~~m~~~~~~~p~~~~~~---~li~~~~----------~~~~~~~a~~--------------------------------- 200 (423)
+.... .....-..+|. .+..... ...+++.|..
T Consensus 218 ~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 218 KTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 77764 11111112221 1111100 0001112222
Q ss_pred ----------------------------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 014502 201 ----------------------------------WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD-RFYEEMMSLGI 245 (423)
Q Consensus 201 ----------------------------------~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~ 245 (423)
+|++....- .-+...|-..+.-+.+.|+.++|. ++|++.... +
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~ 374 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-I 374 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C
Confidence 233332221 113333444444455667777786 888877653 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------ccC------------HHhHHHHHHHHHhcCCHHHHH
Q 014502 246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW---------KIN------------ENMAQKLVKCYCELGRVDELE 304 (423)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~a~ 304 (423)
+.+...|...+...-+.|+++.|.++|+.+.+... .|+ ..+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 34555566777777788888888888888876310 131 236777777777788888899
Q ss_pred HHHHHHHhC-CCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHH
Q 014502 305 EQLETLTKC-NQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDH 382 (423)
Q Consensus 305 ~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 382 (423)
.+|....+. +. +.... |...+..-.+. ++.+.|..+|+...+. .|.++..|...+......|+.+.++.+++.
T Consensus 455 ~vf~~A~~~~~~-~~~~l--yi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 455 KIFGKCRRLKKL-VTPDI--YLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHTGGG-SCTHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CChHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999888775 21 11222 33333223333 4588899998888874 355677777778777777887655544444
Q ss_pred HhCCCcc---cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 383 IKGSYKL---RRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 383 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
.....++ ....|...+..-.+.|+.+.+.++.+++.+
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4333331 346688888888888999999888888864
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=4.9e-09 Score=92.30 Aligned_cols=162 Identities=7% Similarity=-0.048 Sum_probs=76.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHH
Q 014502 116 ALSGKVQNVPFAMHVFTSMEAQ----GIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFI 186 (423)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li 186 (423)
..|...|++++|...|++..+. |-+++ ..+|+.+..+|...|++++|+..|++..+...-..+ ..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655432 21111 345666666666666666666666655431000001 23445555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHH
Q 014502 187 SGFSSL-GNVDAMNKWYAANIAAGFSV-N----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI------PILEK 254 (423)
Q Consensus 187 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ 254 (423)
..|... |++++|+..|++..+..... + ..+++.+...+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 555553 55555555555544321000 0 233445555555555555555555555443211111 13344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
+..++...|++++|...+++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=9.1e-09 Score=78.39 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=8.2
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 014502 149 LICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m 169 (423)
+...+...|++++|..+++++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~ 27 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKA 27 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHH
Confidence 333333334444444433333
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.09 E-value=1.8e-08 Score=87.57 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 162 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
|+..|++... .+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666654 22 34445555666677777777777777777655543 125566666677777777777777777777
Q ss_pred HHCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 241 MSLGIIP-----SIPILEKVLEGL--CARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 241 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (423)
.+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+......++.++.+.|++++|++.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 653 34 244555555442 2223 677777777776553 2443333334446677777777777776554
Q ss_pred hCC-----C---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH
Q 014502 312 KCN-----Q---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV 360 (423)
Q Consensus 312 ~~~-----~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 360 (423)
+.. . .|+.... .-.+|......|+ +|.+++.++.+ ..|++|-..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~-LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTF-LANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHH-HHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH
T ss_pred HhcccccccccCCCCCHHH-HHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH
Confidence 420 0 1333322 3223333333454 66777777766 335545443
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=1.2e-08 Score=88.12 Aligned_cols=187 Identities=9% Similarity=-0.032 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CH
Q 014502 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-V-NV 214 (423)
Q Consensus 141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~ 214 (423)
.+...+-.....+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..|++..+.... | ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 35667777777788888888888888888763 233 456677778888888888888888888775321 1 24
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH
Q 014502 215 QTYESLIHGSLK--------ARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN 285 (423)
Q Consensus 215 ~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 285 (423)
..+..+..++.+ .|++++|+..|++..+.. |+. ....... .+..+... -..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHH
Confidence 556666777777 788888888888776643 321 1111110 01110000 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS----------DRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 350 (423)
.+..+...|.+.|++++|...|+++.+...........+..+..+|... |++++|...|++..+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 2455677788888888888888888774432222222366677777755 7788888888888773
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=8.6e-08 Score=83.31 Aligned_cols=244 Identities=11% Similarity=0.002 Sum_probs=165.0
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH
Q 014502 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195 (423)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 195 (423)
+-..-.|++..++.-. .+.........-.-+.++|...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3444568887777633 2221121233444455788888887642 11234544555444433 322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRKLDRVKSFLKF 274 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 274 (423)
|+..|++....+ .++..++..+..++...|++++|++++.+....+.. -+...+...+..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888877665 456666678889999999999999999988766532 3466788899999999999999999999
Q ss_pred HHhCCCcc-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 275 LLGGGWKI-----NENMAQKLVKCY--CELG--RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 275 ~~~~g~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
|.+. .| +..+...+..++ ...| ++++|..+|+++.... |+... -..++.++...|++++|.+.++
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~--~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKT--QLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHH--HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCccc--HHHHHHHHHHcCCHHHHHHHHH
Confidence 9884 56 355555666663 3334 8999999999997744 54111 2334448999999999999999
Q ss_pred HHHhC-----CC---CCCChHhHHHHHHHHhhccccchHHHHHHHHhC
Q 014502 346 RMGKQ-----GL---SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG 385 (423)
Q Consensus 346 ~m~~~-----~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (423)
.+.+. .. .|.++.+...+|......|+ ++.+.+.+....
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHh
Confidence 77653 11 36779999666666666676 666666666553
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.1e-08 Score=90.04 Aligned_cols=209 Identities=11% Similarity=-0.021 Sum_probs=137.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCC-HHhHHHHHHHHHhcCCHHHH
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKTYDAFISGFSSLGNVDAM 198 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a 198 (423)
++++|...|++. ...|...|++++|...|++..+. .|-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577789999999988877541 121222 45788888999999999999
Q ss_pred HHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 014502 199 NKWYAANIAAGF---SV--NVQTYESLIHGSLKA-RDFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 199 ~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~ 267 (423)
+..+++..+... .+ -..+++.+...|... |++++|+..|++..+. +-.+. ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998887765311 11 135677788888885 8888888888877542 11111 3457777888888888888
Q ss_pred HHHHHHHHHhCCCccCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHH--hcC
Q 014502 268 VKSFLKFLLGGGWKINE------NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL----HFFSGIIRLYA--LSD 335 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~~~li~~~~--~~g 335 (423)
|...+++..+....... ..+..+..++...|++++|...+++..+. .|+... ..+..++..|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888775432221 14566777788888888888888887762 333211 11334455553 345
Q ss_pred ChhHHHHHHHHHH
Q 014502 336 RLDDVEYSVGRMG 348 (423)
Q Consensus 336 ~~~~a~~~~~~m~ 348 (423)
++++|+..|+++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 5677777665543
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.3e-08 Score=77.42 Aligned_cols=129 Identities=12% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 189 (423)
+|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 34455555555556666666665555442 124445555555555555555555555555541 122344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
...|++++|.++++++.+... .+..++..+...+.+.|++++|.+.++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555554431 1344455555555555555555555555443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=2e-08 Score=86.77 Aligned_cols=190 Identities=10% Similarity=-0.032 Sum_probs=130.6
Q ss_pred CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HH
Q 014502 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SK 180 (423)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~ 180 (423)
..+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..+|...|++++|+..|++..+...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 357788888999999999999999999999986321 3 678899999999999999999999999873211222 34
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 181 TYDAFISGFSS--------LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL 252 (423)
Q Consensus 181 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 252 (423)
.+..+..++.. .|++++|+..|++..+.... +......+.. +...... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 66777888888 99999999999999987432 2222222111 1111000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcc--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCEL----------GRVDELEEQLETLTKCN 314 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~ 314 (423)
..+...|...|++++|...++++.+..... ....+..+..+|... |++++|...++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 455666777777777777777776642111 234556666666655 77788888888877743
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=3.2e-08 Score=82.25 Aligned_cols=122 Identities=10% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|++.|++..+..+. +..+|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 5555555666666666665555421 223445555555556666666666666655554322 4455555555554433
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 229 D--FDSVDRFYEEMMSLGIIPSIP--ILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 229 ~--~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
+ .+.+...++... .|+.. .+.....++...|++++|...|++.++
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 222333333322 22221 222223333444555555555555554
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=5.9e-08 Score=80.65 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
+..++.+.|++++|+..|++..+..+. +...|..+...|...|++++|+..|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 666777777777777777777766433 56667777777777777777777777776643 2335566666666554433
Q ss_pred --HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 265 --LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 265 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
.+.+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2333444444332 122222333344455556677777777777666
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=1.6e-07 Score=78.20 Aligned_cols=175 Identities=8% Similarity=-0.066 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHH
Q 014502 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG----NVDAMNKWY 202 (423)
Q Consensus 127 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~ 202 (423)
|.+.|++..+.| ++..+..+...|...+++++|++.|++..+ . -+...+..|-..|.. + ++++|+++|
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 444444444443 445555555555555555555555555544 2 233444444444444 3 555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 014502 203 AANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCA----RRKLDRVKSFLK 273 (423)
Q Consensus 203 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 273 (423)
++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..+-..|.. .+++++|..+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554433 34444444444444 45555555555555444311 013444444444444 445555555555
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 014502 274 FLLGGGWKINENMAQKLVKCYCEL-G-----RVDELEEQLETLTKCN 314 (423)
Q Consensus 274 ~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 314 (423)
+..+. ..+...+..|..+|... | ++++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55544 11222344444444432 2 4555555555555443
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=1.4e-07 Score=79.44 Aligned_cols=190 Identities=8% Similarity=-0.009 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV--QTYE 218 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 218 (423)
+...+..+...+...|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....-.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556666777888889999999999988863211121 246677788888999999999999988876433111 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 219 SLIHGSLK------------------ARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 219 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 279 (423)
.+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 44445543 345555555555554432 221 111110000 0000000
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG 351 (423)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 351 (423)
......+...|.+.|++++|...|+++.+..........++..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112345667778888888888888777442222112236677788888888888888888777643
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=4.1e-08 Score=96.90 Aligned_cols=174 Identities=10% Similarity=-0.066 Sum_probs=104.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 190 SSLGNVDAMNKWYAANI--------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 261 (423)
...|++++|++.+++.. +.. ..+...+..+...|.+.|++++|++.|++..+.. +-+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55667777777777666 322 2245566666666777777777777776666543 2345566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+. .|+.... |..+...|...|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a-~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISA-AFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHH-HHHHHHHHHHcCCHHHHH
Confidence 777777777777766642 2244556666666777777777 7777766663 2443322 666666677777777777
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 342 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (423)
+.|++..+ ..|.++..+..+..++...+.
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 77766655 345556666666666655443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.1e-08 Score=100.88 Aligned_cols=200 Identities=10% Similarity=-0.030 Sum_probs=149.1
Q ss_pred HhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSME--------AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 100 m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+....+.|...+.... ...|++++|.+.+++.. +.. +.+...+..+..++...|++++|++.|++..+
T Consensus 386 ~p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 386 VPLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CBCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3444444444443322 77899999999999987 332 33567888888999999999999999999886
Q ss_pred cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502 172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI 251 (423)
Q Consensus 172 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 251 (423)
. -+-+...|..+..++...|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +-+...
T Consensus 462 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a 536 (681)
T 2pzi_A 462 R--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISA 536 (681)
T ss_dssp H--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHH
T ss_pred c--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHH
Confidence 2 1345678888888999999999999999998887543 67788889999999999999 99999887754 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGR--------VDELEEQLETL 310 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~--------~~~a~~~~~~~ 310 (423)
|..+..++.+.|++++|.+.+++..+. .|+ ...+..+..++...++ +++|.+.+..+
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888899999999999999999988874 354 4566667777655444 45555555444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=4.9e-09 Score=82.24 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502 289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 368 (423)
.+...|.+.|++++|.+.|++..+. .|+.... |..+...|...|++++|+..|++..+ +.|.++..+..+...|.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKA-HRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3444444444444444444444442 2322211 44444444444444444444444444 22334444444444444
Q ss_pred hcccc
Q 014502 369 RCAAY 373 (423)
Q Consensus 369 ~~~~~ 373 (423)
+.|+.
T Consensus 111 ~~~~~ 115 (150)
T 4ga2_A 111 KNDVT 115 (150)
T ss_dssp HHCSS
T ss_pred HcCCh
Confidence 44443
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=9.6e-09 Score=80.57 Aligned_cols=145 Identities=12% Similarity=-0.082 Sum_probs=114.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG 298 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 298 (423)
|...+...|++++|++.++..... .|+ ...+..+...|.+.|++++|.+.+++.++.. +-+..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344556678999999999887643 233 3356678889999999999999999999863 346789999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS-VGRMGKQGLSFKSAEDVEMVICSYFRCAA 372 (423)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (423)
++++|...|++..+. .|+.... |..+...|.+.|+.++|.+. +++..+ +.|.++..|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~--~p~~~~~-~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL--NPTQKDL-VLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999984 4665433 88899999999999887665 578777 567889888887777777664
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=1.1e-07 Score=84.30 Aligned_cols=201 Identities=7% Similarity=-0.049 Sum_probs=119.5
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 161 (423)
+.|++.+|.++++...+.+.. . .+...++++.|...|++. ...|...|++++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~----~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT----S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC----C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHccc----c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 456777888875443332221 0 011146666666666654 345666777777
Q ss_pred HHHHHHHHHhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhcCCHHH
Q 014502 162 ALSLFEIMVSS---EEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAG--F-SV--NVQTYESLIHGSLKARDFDS 232 (423)
Q Consensus 162 A~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~~--~~~~~~~li~~~~~~g~~~~ 232 (423)
|...|.+..+. .+-.+ -..+|+.+...|.+.|++++|+..|++..+.- . .+ -..+++.+...|.+ |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 77777665431 11001 13366677777777777777777777655421 0 11 13456666777777 88888
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccC-HHhHHHHHHHHHhcCCHHH
Q 014502 233 VDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 233 a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~ 302 (423)
|++.|++..+. |-.+ ...++..+...+...|++++|...+++..+. +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 88777766542 1111 1345667777777888888888888777652 11111 1255556666777788888
Q ss_pred HHHHHHHHH
Q 014502 303 LEEQLETLT 311 (423)
Q Consensus 303 a~~~~~~~~ 311 (423)
|...|++..
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888776
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=1.9e-06 Score=75.47 Aligned_cols=216 Identities=9% Similarity=-0.075 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR--DFDSVDRFYEEMMSLGIIPSIPILEKVLEGL----CAR---RKLD 266 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~ 266 (423)
++|++.++.+...+.. +..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666555554322 3444555555555555 6666666666655432 11122233222222 222 5666
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC------hh
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD--ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR------LD 338 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~------~~ 338 (423)
+++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++.+.++++.+.+ |..... |+.-...+...|+ ++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sA-W~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSA-WSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHhccccchhhhHH
Confidence 6677777666643 335556666555566666666 7777777776643 333222 5555445555554 67
Q ss_pred HHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH-HHhCC--CcccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502 339 DVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD-HIKGS--YKLRRATYDFLVAGYRRAGLSGKLDSVI 414 (423)
Q Consensus 339 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (423)
++++.++++.. ..|.+...|+.+...+.+.|.. +++..+.+ ....+ -..+...+..+..+|.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777777776 3456777777777777776664 33333332 22211 1335667777778888888888888888
Q ss_pred HHHHh
Q 014502 415 NEMKF 419 (423)
Q Consensus 415 ~~m~~ 419 (423)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77764
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=2.3e-08 Score=80.75 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=65.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHh
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSS 191 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~ 191 (423)
.+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|++.... .|+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 33444445555555555555444321 113444555555555555555555555554431 1222211111101 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 270 (423)
.+...+|.+.+++..+.... +...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 11112234444444443211 34444444444555555555555555444432111 12344444444444444444444
Q ss_pred HHHH
Q 014502 271 FLKF 274 (423)
Q Consensus 271 ~~~~ 274 (423)
.|++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=5.5e-07 Score=79.12 Aligned_cols=163 Identities=7% Similarity=-0.037 Sum_probs=97.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSK----TYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VN----VQTYES 219 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ 219 (423)
.+..+...|++++|..++++..+.....|+.. .+..+...+...+++++|++.|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776322223321 2334556666667788888888777763221 12 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccC-HHhHH
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMS----L-GIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQ 288 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~ 288 (423)
+...|...|++++|+..|++..+ . +..+.. .++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777888888777777653 1 111221 25666666677777777777776665432 11112 34566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 014502 289 KLVKCYCELGR-VDELEEQLETLT 311 (423)
Q Consensus 289 ~li~~~~~~g~-~~~a~~~~~~~~ 311 (423)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466666666554
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=4.2e-06 Score=73.28 Aligned_cols=231 Identities=8% Similarity=-0.027 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH----Hhc---CCH
Q 014502 125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF----SSL---GNV 195 (423)
Q Consensus 125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~---~~~ 195 (423)
++|+++++.+...... +..+|+.--.++...| +++++++.++.+.... +-+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555554211 3344555555555555 5666666666555421 22223333322222 223 456
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD--SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK------LDR 267 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~ 267 (423)
++++++++.+.+.... +-.+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666655433 5555555555555555555 6666666666544 2344455544444444444 666
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
+++.++++.... +-|...|+-+-..+.+.|+... +..+.+++.+.+ ..|... .++..+...|.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence 677776666653 3466666666666666666333 444555544322 112111 126666777777777777777777
Q ss_pred HHHhCCCCCCChHhHHHH
Q 014502 346 RMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~l 363 (423)
.+.+. ..|.....|+..
T Consensus 283 ~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 283 LLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHT-TCGGGHHHHHHH
T ss_pred HHHhc-cChHHHHHHHHH
Confidence 77642 233335555443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=7e-08 Score=93.38 Aligned_cols=154 Identities=9% Similarity=-0.028 Sum_probs=111.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR 235 (423)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 235 (423)
.|++++|++.|++..+. -+.+...|..+...+.+.|++++|.+.+++..+.... +...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 47888999999888762 2335678888888999999999999999998877533 67888888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 014502 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL---GRVDELEEQLETLTK 312 (423)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 312 (423)
.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999887754 3456788888889999999999999999988753 34567788888888888 999999999999888
Q ss_pred CC
Q 014502 313 CN 314 (423)
Q Consensus 313 ~~ 314 (423)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 55
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=9.7e-08 Score=83.68 Aligned_cols=164 Identities=7% Similarity=-0.083 Sum_probs=94.1
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 44556666666666777777777777666542 124556666666667777777777777666541 34433222222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 014502 187 -SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRK 264 (423)
Q Consensus 187 -~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~ 264 (423)
..+...++.++|.+.+++....... +...+..+...+...|++++|++.|++..+.... .+...+..+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2244555556666666666655422 5566666666666666666666666666554311 113455666666666666
Q ss_pred HHHHHHHHHHH
Q 014502 265 LDRVKSFLKFL 275 (423)
Q Consensus 265 ~~~a~~~~~~~ 275 (423)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66666555544
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.9e-08 Score=78.76 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=120.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDV 159 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~ 159 (423)
...|++++|... +++..+..+.+...+..+...+.+.|++++|...|++..... |+...+...... +...++.
T Consensus 17 ~~~g~~~~A~~~----~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 17 LQQGEHAQALNV----IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHTTCHHHHHHH----HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHH----HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 789999999999 566666666788999999999999999999999999987653 355444333222 2222334
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYE 238 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 238 (423)
.+|+..+++..+.. +-+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|+
T Consensus 91 ~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 91 SPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred chHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 45788898887621 3357788889999999999999999999999875443 35688899999999999999999998
Q ss_pred HHHH
Q 014502 239 EMMS 242 (423)
Q Consensus 239 ~m~~ 242 (423)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=3.7e-07 Score=76.01 Aligned_cols=165 Identities=13% Similarity=-0.060 Sum_probs=129.7
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCHHh
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----DVVTALSLFEIMVSSEEYKPNSKT 181 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~~ 181 (423)
.+..++..+...|...+++++|.+.|++..+.| ++..+..+...|.. + ++++|++.|++..+ . -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 467788888888888899999999999988875 67788888888887 6 89999999999877 3 46677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502 182 YDAFISGFSS----LGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPIL 252 (423)
Q Consensus 182 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 252 (423)
+..|-..|.. .+++++|+++|++..+.|.. .+...+..|-..|.. .+++++|++.|++..+.+ .+...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence 7778888877 78999999999998877532 126778888888888 788999999999988762 334456
Q ss_pred HHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 014502 253 EKVLEGLCAR-R-----KLDRVKSFLKFLLGGGW 280 (423)
Q Consensus 253 ~~li~~~~~~-g-----~~~~a~~~~~~~~~~g~ 280 (423)
..+-..|... | ++++|..+++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6666666543 3 88999999999888774
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.2e-07 Score=83.10 Aligned_cols=160 Identities=9% Similarity=-0.071 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK-VLEGLC 260 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~ 260 (423)
+..+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|...+++.... .|+...... ....+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 333444444444455555444444443322 3344444444445555555555544444332 223221111 111233
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHhcCChhH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV-LLHFFSGIIRLYALSDRLDD 339 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~~~li~~~~~~g~~~~ 339 (423)
..++.+.|...+++..+.. +.+...+..+...|...|++++|...++++.+.. |+. ....+..+...|...|+.++
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCCCc
Confidence 3444444455555544432 2234445555555555555555555555555432 221 01114555555555555555
Q ss_pred HHHHHHHH
Q 014502 340 VEYSVGRM 347 (423)
Q Consensus 340 a~~~~~~m 347 (423)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=7.7e-08 Score=93.09 Aligned_cols=154 Identities=9% Similarity=-0.011 Sum_probs=105.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 014502 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 162 (423)
.|++++|.+. +++..+..+.+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|
T Consensus 2 ~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQ----LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3667778877 455555555677888888888888888888888888887763 22567888888888888888888
Q ss_pred HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 014502 163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---RDFDSVDRFYEE 239 (423)
Q Consensus 163 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~ 239 (423)
.+.|++..+. .+.+...+..+..++.+.|++++|.+.|++..+.... +...+..+...+... |++++|.+.+++
T Consensus 77 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888888762 1335667788888888888888888888888776533 567778888888888 888888888888
Q ss_pred HHHCC
Q 014502 240 MMSLG 244 (423)
Q Consensus 240 m~~~~ 244 (423)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 77654
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=5.2e-07 Score=75.89 Aligned_cols=184 Identities=9% Similarity=0.027 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH----Hh
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NM 286 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~ 286 (423)
+...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...++++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3455666677788889999999999888764311 21 3567777888888899999999998888753 322 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH------
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV------ 360 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------ 360 (423)
+..+..++.+.|.. .++ . |..+...+...|++++|...|+++.+. .|+++..+
T Consensus 81 ~~~~g~~~~~~~~~-----~~~------------~--~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----ALQ------------G--FFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hhh------------h--hhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH
Confidence 44444555442100 000 0 111112222334444444444444431 12222222
Q ss_pred -----------HHHHHHHhhccccc-hHHHHHHHHhCCCccc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 361 -----------EMVICSYFRCAAYD-RLDLFLDHIKGSYKLR----RATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 361 -----------~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
..+...|.+.|+.+ +...+.+.+.. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455677777774 56666666653 222 3568888899999999999999998876654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=1.4e-06 Score=76.46 Aligned_cols=167 Identities=6% Similarity=-0.081 Sum_probs=123.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHh
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGI-KPDS----AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKT 181 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~ 181 (423)
+...+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+...-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34446778889999999999999887432 2221 13445677777788999999999998862212233 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMS----LGIIPS-IP 250 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~ 250 (423)
|+.+...|...|++++|+..|++..+. +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 888999999999999999999988741 21222 34788889999999999999999987754 333333 56
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 014502 251 ILEKVLEGLCARRK-LDRVKSFLKFLLG 277 (423)
Q Consensus 251 ~~~~li~~~~~~g~-~~~a~~~~~~~~~ 277 (423)
+|..+...+.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78888889999994 6999998888754
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=2.8e-05 Score=73.40 Aligned_cols=356 Identities=8% Similarity=-0.056 Sum_probs=210.5
Q ss_pred cHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCC-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 014502 40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117 (423)
Q Consensus 40 ~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~-~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~ 117 (423)
|...+..+-.....++..+|+.... ..|++..|...+.. .+.+. .+....+|+..+..+ ....++...|...+..
T Consensus 18 yer~l~~~P~~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMSKDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS-TTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHH
Confidence 3344433333335566788887765 34788899999988 44442 344555543333221 1134577888888887
Q ss_pred Hhc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHhcCCCCCCHH
Q 014502 118 SGK----VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------------SGDVVTALSLFEIMVSSEEYKPNSK 180 (423)
Q Consensus 118 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~~~~p~~~ 180 (423)
+.. .++++.+.++|++.......--...|......-.. .+.+..|..+++++.... -..+..
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~-~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI-RGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH-hhccHH
Confidence 653 46788999999999874322112233333221111 123334455555444310 001334
Q ss_pred hHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 181 TYDAFISGFSSLG--N-----VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 181 ~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
.|...+..-...+ - .+.+..+|++...... -+...|...+.-+.+.|+.++|.++|++.... |+...+.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~ 249 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence 5655555433221 1 3456788999887643 36788888888889999999999999999877 4433221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---------C---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLLGG---------G---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~~~---------g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
. .|....+.++. ++.+.+. + ......+|...+..+.+.++.+.|..+|+.. ... ..+...
T Consensus 250 ~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v 321 (493)
T 2uy1_A 250 L---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHV 321 (493)
T ss_dssp H---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHH
T ss_pred H---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHH
Confidence 1 22222222222 2222211 0 0111245667777777788899999999999 321 122222
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHH
Q 014502 322 HFFSGIIRLYAL-SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400 (423)
Q Consensus 322 ~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 400 (423)
|......-.. .++.+.|..+|+...+.. |.++..+...+....+.|+.+.+..+++... .....|...+..
T Consensus 322 --~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~f 393 (493)
T 2uy1_A 322 --FIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEY 393 (493)
T ss_dssp --HHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4322222222 336999999999998753 4567777777777777888765555544442 256778888888
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 014502 401 YRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 401 ~~~~g~~~~a~~~~~~m~~ 419 (423)
-...|+.+.+.++++++.+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888999999998888763
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.7e-06 Score=74.63 Aligned_cols=168 Identities=7% Similarity=-0.039 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGF---SVN--V 214 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 214 (423)
..+...+..+...|++++|.+.+++..+.....++. ..+..+...+...|++++|++.+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344555666777788888887777766521111111 1233344555666777777777777664311 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccC-
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMS---L-GIIP--SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKIN- 283 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~- 283 (423)
.+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4666777777777777777777776652 1 1111 11456666666677777777777776655421 1111
Q ss_pred HHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014502 284 ENMAQKLVKCYCELGRVDEL-EEQLETLT 311 (423)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 311 (423)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34566666666667777666 55555543
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=9.1e-07 Score=73.42 Aligned_cols=125 Identities=12% Similarity=0.007 Sum_probs=63.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 227 (423)
.+...+...|++++|+..|++.. .|+...|..+...+.+.|++++|++.|++..+... .+...|..+...|.+.
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 34444455555555555555442 23445555555555555555555555555554432 2444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 228 RDFDSVDRFYEEMMSLGI--------------IPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~--------------~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
|++++|.+.|++..+... .|+ ...+..+...+...|++++|...+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555544321 111 134555555555566666666666655553
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.6e-06 Score=71.84 Aligned_cols=129 Identities=9% Similarity=-0.098 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
.+..+...+...|++++|.+.|++.. .|+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34456677778888888888888763 5677888888888888888888888888887654 345677888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCc--------------c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 261 ARRKLDRVKSFLKFLLGGGWK--------------I-NENMAQKLVKCYCELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 314 (423)
..|++++|.+.+++..+..-. | ....+..+..+|.+.|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888774311 1 12567777788888888888888888887743
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=1e-06 Score=77.99 Aligned_cols=200 Identities=9% Similarity=-0.028 Sum_probs=139.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccC
Q 014502 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLICACLCSG 157 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g 157 (423)
.+++++|...| .+ ....|...|++++|...|.+..+. |-.+ -..+|+.+..+|...|
T Consensus 29 ~~~~~~A~~~~----~~--------------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 90 (307)
T 2ifu_A 29 KPDYDSAASEY----AK--------------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90 (307)
T ss_dssp SCCHHHHHHHH----HH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHH----HH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 47788888884 32 245677889999999998887653 1111 1347888899999999
Q ss_pred CHHHHHHHHHHHHhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcC
Q 014502 158 DVVTALSLFEIMVSS---EEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS---V--NVQTYESLIHGSLKAR 228 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g 228 (423)
++++|+..|++..+. .|-.. -..+++.+...|.. |++++|++.|++..+.... + ...+++.+...|.+.|
T Consensus 91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 999999999876541 11111 13577888888888 9999999999987753111 1 1467888899999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC------HHhHHHHHHHHHhc
Q 014502 229 DFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN------ENMAQKLVKCYCEL 297 (423)
Q Consensus 229 ~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~ 297 (423)
++++|++.|++..+. +..+. ...+..+...+...|++++|...+++.. . .|+ ......++.++ ..
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~ 245 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DE 245 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HT
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-Hh
Confidence 999999999988652 22222 2256666777788899999999999988 4 232 12344455544 46
Q ss_pred CCHHHHHH
Q 014502 298 GRVDELEE 305 (423)
Q Consensus 298 g~~~~a~~ 305 (423)
|+.+.+.+
T Consensus 246 ~d~~~~~~ 253 (307)
T 2ifu_A 246 QDEEQLLR 253 (307)
T ss_dssp TCHHHHHH
T ss_pred cCHHHHHH
Confidence 66655544
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=1.8e-05 Score=70.15 Aligned_cols=113 Identities=5% Similarity=-0.067 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR-------LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY- 373 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~- 373 (423)
++.+.++++.+.+ |..... |+.....+.+.++ ++++++.+++... ..|.+...|+.+-..+.+.|..
T Consensus 185 eELe~~~k~I~~d--p~N~SA-W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 185 SELDWCNEMLRVD--GRNNSA-WGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHH-HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhC--CCCHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCc
Confidence 5666666666533 332222 5555555555554 4666666666665 3455667776665555554443
Q ss_pred -------------------chHH-HHHHHHhCC-----CcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 374 -------------------DRLD-LFLDHIKGS-----YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419 (423)
Q Consensus 374 -------------------~~~~-~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 419 (423)
..+. ...+....+ ..++......+++.|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1111 111111111 134567788888888888888888888888753
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=4.5e-06 Score=73.20 Aligned_cols=167 Identities=6% Similarity=-0.092 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CCC--HH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPN--SK 180 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~--~~ 180 (423)
.+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|+..+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666777777777777776665422211 122344556667777788887777776641111 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIA---A-GFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPS-I 249 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~ 249 (423)
+|+.+...|...|++++|...|++..+ . +-.+ ...+|+.+...|.+.|++++|++.+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777777778888888877777652 2 1111 1246777777788888888888877766432 21111 4
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014502 250 PILEKVLEGLCARRKLDRV-KSFLKFLL 276 (423)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a-~~~~~~~~ 276 (423)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777777788888877 66666654
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=8.4e-07 Score=72.90 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+..+...+...|++++|...+++..+. ...+.....++..+...+...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555555555555555554321 111111122244555556666666666665555443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.8e-06 Score=68.25 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502 109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG 188 (423)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 188 (423)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345555555666666666666666655542 224555666666666666666666666665542 12334455555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYES--LIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m 240 (423)
+...|++++|.+.|++..+.... +...+.. ....+.+.|++++|++.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666665554322 3333322 222244555666665555443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=1.2e-06 Score=66.05 Aligned_cols=106 Identities=7% Similarity=-0.006 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~ 331 (423)
+......|.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|...+++..+. .|+.... |..+..+|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~ 91 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKG-YIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHH-HHHHHHHH
Confidence 4444445555555555555555554432 223445555555555555555555555555552 2332221 55555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
...|++++|.+.|++..+ +.|.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 555555555555555555 334444444433
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2.6e-06 Score=67.25 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
+...+...|++++|...|++..+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 333344444444444444444333211 33334444444444444444444444433321 1223333333334444444
Q ss_pred HHHHHHHHHHHH
Q 014502 265 LDRVKSFLKFLL 276 (423)
Q Consensus 265 ~~~a~~~~~~~~ 276 (423)
+++|...+++..
T Consensus 97 ~~~A~~~~~~a~ 108 (166)
T 1a17_A 97 FRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2.5e-06 Score=63.54 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
.|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|..+++++.+... .+..++..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 3333444444444444444444444331 112233333344444444444444444444433321 1333334444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEMM 241 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~ 241 (423)
.+.|++++|.+.|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 44444444444444433
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=3.2e-06 Score=62.92 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259 (423)
Q Consensus 180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 259 (423)
..+..+...+...|++++|.++++++.+... .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3455555555666666666666665555432 244555555555555666666666555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 014502 260 CARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~ 277 (423)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=2.1e-07 Score=81.28 Aligned_cols=194 Identities=7% Similarity=-0.041 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|++.+++..+.... +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555556666666666666666655421 224455555666666666666666666665554322 455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
.+|...|++++|...|++..+.+ |+. ..+...+....+ ..... -+........+.+......+... ..|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 66666666666666666554321 100 000001111110 01111 11112222233333333333221 24666
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGK 349 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 349 (423)
++|.+.++...+. .|+.... ...+-..+.+. +.+++|.++|.+..+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHI-RAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHH-THHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777766666553 3443321 23333334433 556677777766654
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=8.7e-07 Score=72.79 Aligned_cols=156 Identities=11% Similarity=-0.050 Sum_probs=87.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 014502 155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARD 229 (423)
Q Consensus 155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 229 (423)
..|++++|.++++.... .......++..+...+...|++++|...+++.... +.. ....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45666666664444332 11123445555666666666666666666655541 111 123455666666777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcC
Q 014502 230 FDSVDRFYEEMMSL----GIIP--SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELG 298 (423)
Q Consensus 230 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g 298 (423)
+++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+. +... -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665432 1111 1234566666677777777777777766532 1111 1224566777788888
Q ss_pred CHHHHHHHHHHHHh
Q 014502 299 RVDELEEQLETLTK 312 (423)
Q Consensus 299 ~~~~a~~~~~~~~~ 312 (423)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777654
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=6.4e-05 Score=66.63 Aligned_cols=172 Identities=9% Similarity=0.044 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CH
Q 014502 83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-G-DV 159 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~ 159 (423)
.+..++|++. ++++...++.+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++... + ++
T Consensus 67 ~e~se~AL~l----t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 67 EEKSERALEL----TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TCCSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred CCCCHHHHHH----HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3344678888 67777777777888888777777777 588999999998887543 677888877777766 6 78
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--------AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-- 229 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-- 229 (423)
++++++++++.+. -+.|..+|+.-.-.+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 8888888888762 2445566655444444444444 778888888777644 77777777666666665
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 230 -----FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263 (423)
Q Consensus 230 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 263 (423)
++++++.+++..... +-|...|+-+-..+.+.|
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 566777666666543 334555554444444433
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=0.00016 Score=68.11 Aligned_cols=324 Identities=9% Similarity=-0.055 Sum_probs=191.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-hhHHHHHHHHHHHC-CCC-CCHHHHHH
Q 014502 72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-VPFAMHVFTSMEAQ-GIK-PDSAVFNS 148 (423)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-g~~-p~~~~~~~ 148 (423)
..|...+..+-.++++.+..+| ++-.. ..|+...|...+....+.++ .+....+|+..... |.. .+...|..
T Consensus 16 ~vyer~l~~~P~~~~e~~~~if----eral~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLF----GRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH----HHHST-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH----HHHhc-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3444444444448899999995 44444 34799999888888777663 45677788877653 543 36788988
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCC
Q 014502 149 LICACLC----SGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSS-------------LGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 149 li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~-------------~~~~~~a~~~~~~m~~~~ 209 (423)
.+..+.. .++.+.+.++|++... . ++. ...|......-.. .+.+..|..+++++...-
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQ-T--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHT-S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHh-C--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8876543 4678889999999986 2 222 1223222221111 112233444444443210
Q ss_pred CCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 014502 210 FSVNVQTYESLIHGSLKAR--D-----FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282 (423)
Q Consensus 210 ~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~ 282 (423)
...+...|...+.--...+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..++++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 0113445655555432221 1 345678899887743 455778888888888999999999999999987 33
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCN----------QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
+...+. .|+...+.++. ++.+.+.- ..+.....+|...+..+.+.+..+.|..+|++. ..
T Consensus 245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-- 314 (493)
T 2uy1_A 245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-- 314 (493)
T ss_dssp SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--
T ss_pred cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--
Confidence 333332 23332222222 22222210 012222334777788777888999999999998 32
Q ss_pred CCCChHhHHHHHHHHhhcc-ccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 353 SFKSAEDVEMVICSYFRCA-AYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 417 (423)
.+.+...|...+..-...+ +.+ +..++...+.. ++-++..+...++...+.|+.+.|..+|+..
T Consensus 315 ~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 315 EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123555543332222233 465 45566555553 3334556777888888999999999988874
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=3.7e-06 Score=63.36 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
+......|.+.|++++|++.|++..+. -+.+...|..+..++.+.|++++|++.|++..+.... +...|..+..+|.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 333333444444444444444443331 0122333333334444444444444444443333211 2333333333444
Q ss_pred hcCCHHHHHHHHHHH
Q 014502 226 KARDFDSVDRFYEEM 240 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m 240 (423)
..|++++|++.|++.
T Consensus 93 ~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 93 AMREWSKAQRAYEDA 107 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 444444444444333
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.4e-06 Score=72.29 Aligned_cols=126 Identities=7% Similarity=-0.131 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcC
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELG 298 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g 298 (423)
...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++...... .|. ...+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 334444555555555554444322 322233333334445555555555554332211 010 123444455555555
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
++++|.+.|++.......|............++.+.|+.++|...|+++..
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555432221332221133344445555555555555555554
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.9e-06 Score=64.12 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m 169 (423)
.|..+...+...|++++|...|++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~a 42 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEA 42 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333444444444444433
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=4e-06 Score=62.96 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=9.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m 169 (423)
+..+...+...|++++|...|++.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~ 38 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKA 38 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333333333334444444443333
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=3.8e-06 Score=63.15 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=63.4
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34455555566666666666666666655542 224555555556666666666666666655541 122344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD 229 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 229 (423)
..+...|++++|.+.|++..+.... +...+..+...+.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555566666666666555554321 44444445455544443
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=7.4e-07 Score=77.75 Aligned_cols=195 Identities=8% Similarity=-0.049 Sum_probs=128.2
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+. -+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677888888999999999999999988763 227788899999999999999999999998762 234567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
.++...|++++|.+.|++..+.... +...+...+....+. .++. -+..........+......+ ..+ ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 9999999999999999887764211 111111111111111 1111 12223333334444443333 222 368888
Q ss_pred HHHHHHHHHHhCCCccCHH-hHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 014502 267 RVKSFLKFLLGGGWKINEN-MAQKLVKCYCEL-GRVDELEEQLETLTKC 313 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~a~~~~~~~~~~ 313 (423)
+|.+.+++..+. .|+.. ....+-..+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 998888887764 45443 334444445554 6688899999887653
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=3.3e-06 Score=63.83 Aligned_cols=119 Identities=10% Similarity=-0.011 Sum_probs=85.2
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+. .+.+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 356777888888888888888888888887653 226677888888888888888888888887762 13356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
..++.+.|++++|.+.|++..+.... +...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 78888888888888888887765322 3455555555555444
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=3.4e-06 Score=65.74 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=50.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
.+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+..+. +...|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 45555555555555555555555555421 223445555555555555555555555555554322 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~ 242 (423)
.+.|++++|.+.|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=1.1e-06 Score=68.64 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=86.0
Q ss_pred CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502 105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA 184 (423)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 184 (423)
+.+...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|+..|++..+.. +-+...|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHH
Confidence 3467788888899999999999999999998864 2367889999999999999999999999998732 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~ 209 (423)
+..+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988864
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.2e-06 Score=70.49 Aligned_cols=118 Identities=11% Similarity=0.011 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG-LCARRKL--DRV 268 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~a 268 (423)
.|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444444444444443321 133444444444444455555555444444322 1223334444444 3344444 455
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
...+++..+.. +.+...+..+...|...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55554444432 12234444444455555555555555555444
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=2.2e-06 Score=68.86 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=53.9
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHhcCCH--H
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNV--D 196 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~--~ 196 (423)
..|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4455555555555544432 1244455555555555555555555555554311 1233344444444 4444554 5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
+|.+.+++..+.... +...+..+...|...|++++|...|++..+
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555444321 344444444455555555555555554444
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.45 E-value=4.9e-06 Score=74.57 Aligned_cols=124 Identities=9% Similarity=-0.117 Sum_probs=68.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--------------SAVFNSLICACLCSGDVVTALSLFEIMVSS 172 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 172 (423)
+...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666666666666666666666665422111 345555556666666666666666655542
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 173 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
-+.+...|..+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 1224445555555566666666666666655554322 444555555555555555555
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=4.4e-06 Score=74.86 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++- ......|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHHH--------HHHHHHHHHHH
Confidence 3456666777777777777777777776652 2322000 000000000 00023444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
.+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444432 2234444445555555555555555555554432 123344444555555555555
Q ss_pred HH
Q 014502 302 EL 303 (423)
Q Consensus 302 ~a 303 (423)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00023 Score=62.79 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=81.0
Q ss_pred hcCCHH-HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 82 QSSSPK-KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN----------VPFAMHVFTSMEAQGIKPDSAVFNSLI 150 (423)
Q Consensus 82 ~~~~~~-~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li 150 (423)
+.|.+. +|+.. .+.+...++.+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-.
T Consensus 41 ~~~e~s~eaL~~----t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHH----HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HcCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 445443 66776 566666666666666654444433322 56677777776665322 666777666
Q ss_pred HHHHccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502 151 CACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA 227 (423)
Q Consensus 151 ~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 227 (423)
..+...| .+++++.+++.+.+.. +-|...|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 6666666 3677777777776522 3455556555555555666 46777777777766543 666666555444443
No 147
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.1e-05 Score=72.92 Aligned_cols=197 Identities=10% Similarity=-0.079 Sum_probs=96.7
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH
Q 014502 116 ALSGKVQNVPFAMHVFTSMEAQGIKPDS----------------AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS 179 (423)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 179 (423)
..+.+.|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+.+.....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4455666777777777666654322110 124556666666666666666666554421111111
Q ss_pred H----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--C
Q 014502 180 K----TYDAFISGFSSLGNVDAMNKWYAANIAA----GFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI--I 246 (423)
Q Consensus 180 ~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~ 246 (423)
. +.+.+-..+...|+.++|.+++...... +..+. ..++..+...|...|++++|..++++.... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1222223333445666666666554431 21211 334555566666666666666666555331 11 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 247 PS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 247 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+. ..++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 234555556666666666666666555432 11111 12344444455555666666655555543
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.9e-06 Score=67.10 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY 331 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~ 331 (423)
+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++....+ |+.... |..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~-~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRF-PFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchH-HHHHHHHH
Confidence 4444444555555555555555554432 2244445555555555555555555555555422 322211 44455555
Q ss_pred HhcCChhHHHHHHHHHHh
Q 014502 332 ALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 332 ~~~g~~~~a~~~~~~m~~ 349 (423)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=1.1e-05 Score=69.23 Aligned_cols=125 Identities=7% Similarity=-0.102 Sum_probs=53.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh
Q 014502 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLK 226 (423)
Q Consensus 149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~ 226 (423)
....+...|++++|.++|+.+.. . .|+....-.+...+.+.+++++|+..|+...... .|. ...+..+-.++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34444555555555555555543 1 2322233333344555555555555554332211 110 1234444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555554442221132 11233333344445555555555555544
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=1.3e-05 Score=62.36 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=66.7
Q ss_pred HHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 014502 98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177 (423)
Q Consensus 98 ~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 177 (423)
++.....+.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..... +.
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~ 87 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX 87 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC
Confidence 33333333455566666666677777777777777666543 2255666666667777777777777777666521 23
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
+...+..+..++...|++++|.+.|++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666677777777777777666554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-05 Score=59.46 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL 225 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 225 (423)
|......+.+.|++++|+..|++..+. .+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 333444444444444444444444331 1122333444444444444444444444444433211 2333444444444
Q ss_pred hcCCHHHHHHHHHHH
Q 014502 226 KARDFDSVDRFYEEM 240 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m 240 (423)
..|++++|.+.|++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 444444444444433
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3e-05 Score=56.83 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=9.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m 169 (423)
+..+...+...|++++|...|++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~ 30 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEA 30 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 333333334444444444444433
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=0.00024 Score=65.68 Aligned_cols=193 Identities=7% Similarity=-0.129 Sum_probs=138.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCC--C---------------HhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCC
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNES--C---------------LDEYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPD 142 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~--~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 142 (423)
.+.|++.+|.+.|. +..+.... + ..++..+...|.+.|++++|.+.+..+...- -.++
T Consensus 15 ~~~~~y~eA~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYL----SLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHTCHHHHHHHHH----HHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHCCCHHHHHHHHH----HHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 68999999999964 44443331 1 1247889999999999999999998876531 1112
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-
Q 014502 143 S----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFS- 211 (423)
Q Consensus 143 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~- 211 (423)
. .+.+.+-..+...|++++|..++++.... .+..+. ..++..+...+...|++++|..++++.... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333444455678999999999887541 222333 457788899999999999999999987754 211
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 212 -V-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 212 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
+ ...+|..++..|...|++++|...+++.... +..+. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999887542 21222 23466666777888999999998887754
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3e-05 Score=56.87 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 189 (423)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34444444445555555555555444432 113444444444444445555555444444431 112233444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~ 207 (423)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=9.2e-07 Score=72.63 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=14.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
.+..+...+...|++++|+..|++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555556555555554
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00054 Score=60.39 Aligned_cols=232 Identities=9% Similarity=-0.066 Sum_probs=152.2
Q ss_pred hcCCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 119 GKVQNVP-FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----------VVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 119 ~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
.+.|.+. +|+++++.+...... +..+|+.--..+...+. +++++.+++.+... -+-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3556655 789999999986422 45567665444444333 67888999988863 2456677777776
Q ss_pred HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 014502 188 GFSSLG--NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-- 262 (423)
Q Consensus 188 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-- 262 (423)
.+.+.+ .+++++.+++.+.+.... |-.+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 777777 489999999999988644 88888877777777888 589999999998765 45666777665555444
Q ss_pred ------------CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCch
Q 014502 263 ------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-----------GRVDELEEQLETLTKCNQSPEV 319 (423)
Q Consensus 263 ------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~ 319 (423)
+.++++++.+....... +-|...|+-+-..+.+. +.++++.+.++++.+ ..|+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 34677888888887753 44666776554444444 346777788888777 44654
Q ss_pred HHHHHHHHHHH-----HHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 320 LLHFFSGIIRL-----YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 320 ~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
. |+.+-.+ ....|..+++...+.++.+ +.|-...-|.-+
T Consensus 272 ~---w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~ 315 (331)
T 3dss_A 272 K---WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 315 (331)
T ss_dssp H---HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred c---hHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence 3 3322211 1234556677777777766 434334444333
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.1e-06 Score=72.06 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
.+..+...+.+.|++++|++.|++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.3e-05 Score=60.33 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
+..+...+.+.|++++|++.|++..+..+. +...|+.+..+|.+.|++++|++.|++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444444444444443211 3344444444444444444444444443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.4e-05 Score=59.96 Aligned_cols=91 Identities=3% Similarity=-0.061 Sum_probs=39.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS 334 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 334 (423)
....+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+.+ |+.... |..+..+|...
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~lg~~~~~~ 85 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRA-YIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHH-HHHHHHHHHHH
Confidence 3334444444444444444444321 1233444444444444444444444444444422 322211 44444444455
Q ss_pred CChhHHHHHHHHHHh
Q 014502 335 DRLDDVEYSVGRMGK 349 (423)
Q Consensus 335 g~~~~a~~~~~~m~~ 349 (423)
|++++|...|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555444443
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=1.6e-05 Score=57.82 Aligned_cols=56 Identities=7% Similarity=-0.026 Sum_probs=21.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
+...+...|++++|...+++..+.... +...|..+...+...|++++|.+.|++..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333333444444444444433333211 23333333333344444444444443333
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.3e-05 Score=59.44 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 014502 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324 (423)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 324 (423)
...+..+...+...|++++|...+++..+. .|+ ...+..+..+|...|++++|...+++..+. .|+.... |
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~ 102 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA-L 102 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH-H
Confidence 344444444555555555555555555543 233 344455555555555555555555555542 2322111 4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 325 SGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 325 ~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
..+...|...|++++|...|++..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555566666666666655554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=7.8e-06 Score=62.99 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=53.0
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 186 (423)
+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..... +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence 44445555555555666666666666555542 1244555555555566666666666665555421 22334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 014502 187 SGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
.++...|++++|.+.|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5555566666666665555443
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.1e-05 Score=60.58 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=24.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 206 (423)
.|..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444444444444444444331 12233333344444444444444444444433
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1.3e-05 Score=58.29 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--CHHhHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP--NSKTYDAF 185 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~l 185 (423)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHH
Confidence 3344444555555555555555555544432 1234444445555555555555555555544411 11 23444444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC
Q 014502 186 ISGFSSL-GNVDAMNKWYAANIAA 208 (423)
Q Consensus 186 i~~~~~~-~~~~~a~~~~~~m~~~ 208 (423)
..++.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 4455555 5555555555544443
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.2e-05 Score=58.27 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502 144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES 219 (423)
Q Consensus 144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 219 (423)
..+..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|++.+++..+.... +...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 3444444444444444444444444443 1233 233444444444444444444444444433211 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
+..+|...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=1.2e-05 Score=60.51 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 170 (423)
+..+...+.+.|++++|+..|++..+.. +-+...|+.+..+|...|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444445555555555555555544432 1134444555555555555555555554443
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=1.8e-05 Score=60.95 Aligned_cols=88 Identities=13% Similarity=-0.038 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
..+.+.|++++|++.|++....... +...|..+..+|.+.|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444433211 33334444444444444444444444443322 112233333444444444444
Q ss_pred HHHHHHHHHH
Q 014502 267 RVKSFLKFLL 276 (423)
Q Consensus 267 ~a~~~~~~~~ 276 (423)
+|...++...
T Consensus 104 ~A~~~~~~al 113 (142)
T 2xcb_A 104 GAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=3.6e-05 Score=58.47 Aligned_cols=19 Identities=5% Similarity=-0.129 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 014502 186 ISGFSSLGNVDAMNKWYAA 204 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~ 204 (423)
...+...|++++|...|++
T Consensus 16 g~~~~~~~~~~~A~~~~~~ 34 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGR 34 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHH
Confidence 3333333333333333333
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=3.3e-05 Score=61.04 Aligned_cols=95 Identities=4% Similarity=-0.126 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 260 (423)
.+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +-+...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4444444555555555555555555444322 44445555555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 014502 261 ARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~ 277 (423)
..|++++|...+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=1.8e-05 Score=62.60 Aligned_cols=98 Identities=8% Similarity=0.060 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 292 (423)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|...+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555666666666666666666665543 2244555555566666666666666666665542 223455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 014502 293 CYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~ 312 (423)
+|...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=3.9e-05 Score=58.25 Aligned_cols=97 Identities=6% Similarity=-0.039 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...+++..+.... +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 44555555666666666666666666555421 223445555556666666666666666665554322 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 014502 222 HGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~ 241 (423)
.+|...|++++|...|++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666665554
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=2.3e-05 Score=58.68 Aligned_cols=26 Identities=4% Similarity=0.018 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+..+..+|...|++++|...++...+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=2.3e-05 Score=61.12 Aligned_cols=99 Identities=7% Similarity=-0.106 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHH
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLH 322 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~ 322 (423)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+. ...+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444444555555555555544321 1000 1234455555666666666666666655431 011112222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 323 FFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 323 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356666677777777777777766554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.8e-05 Score=61.78 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HH
Q 014502 110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIK-PD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SK 180 (423)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 180 (423)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555566666666666666555432100 01 124555555555566666666655554331000011 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444445555555555555555544322 100 01223344444444455555555544443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=4.8e-05 Score=56.65 Aligned_cols=59 Identities=2% Similarity=-0.145 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM 240 (423)
Q Consensus 181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 240 (423)
.|..+..++...|++++|+..|++..+.... +...+..+...|.+.|++++|+..|++.
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 53 AWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333444444444444444443333211 2333333333444444444444444333
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=6.1e-05 Score=56.11 Aligned_cols=94 Identities=12% Similarity=-0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 190 (423)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344444555555555555555555432 1144455555555555555555555555554411 123344445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 014502 191 SLGNVDAMNKWYAANIA 207 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~ 207 (423)
..|++++|+..+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=0.00017 Score=53.89 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC---HHhHHHHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI---PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKLVKCY 294 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~ 294 (423)
...+.+.|++++|...|++..+... .+. ..+..+...+...|++++|...+++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3344444555555555554443221 111 233334444444444444444444444321 111 22333344444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 014502 295 CELGRVDELEEQLETLTK 312 (423)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~ 312 (423)
...|++++|...|+.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.3e-05 Score=59.38 Aligned_cols=85 Identities=12% Similarity=-0.060 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHhCC--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502 262 RRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD 339 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 339 (423)
.|++++|...+++.++.+ -+.+...+..+..+|...|++++|...|++..+.. |+.... +..+..+|...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQAL-RVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHH-HHHHHHHHHHcCCHHH
Confidence 455666666666666543 12234455566666666666666666666666532 333222 5556666666666666
Q ss_pred HHHHHHHHHh
Q 014502 340 VEYSVGRMGK 349 (423)
Q Consensus 340 a~~~~~~m~~ 349 (423)
|...+++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00037 Score=52.03 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN---VQTYESLIH 222 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~ 222 (423)
...+...|++++|...|++..+. .|+. ..+..+..++.+.|++++|...|++..+.... + ...+..+..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34444455555555555554431 1221 23334444444555555555555544443211 1 333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 014502 223 GSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~ 242 (423)
++.+.|++++|...|++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=3.2e-05 Score=72.72 Aligned_cols=123 Identities=13% Similarity=0.003 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+. -+.+..+|..+..+|.+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334445667888888888888887763 225778888888888889999999888888872 23356678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014502 192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHG--SLKARDFDSVDRFYE 238 (423)
Q Consensus 192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 238 (423)
.|++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999998888776432 34445555544 778888888888887
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=0.00014 Score=67.93 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 293 (423)
...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455555666666666666666666655533 2234555555556666666666666666655532 1233345555555
Q ss_pred HHhcCCHHHHH
Q 014502 294 YCELGRVDELE 304 (423)
Q Consensus 294 ~~~~g~~~~a~ 304 (423)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=3.6e-05 Score=72.38 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=60.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (423)
.+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344555566666666555554322 45555556666666666666666666655543 2234555555666666666666
Q ss_pred HHHHHHHHHhCCCccCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 014502 268 VKSFLKFLLGGGWKINENMAQKLVKC--YCELGRVDELEEQLE 308 (423)
Q Consensus 268 a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 308 (423)
|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655532 1122233333333 555666666666666
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00019 Score=56.34 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555555555555555555554432 22344555555555555555555555555554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00016 Score=65.54 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAG--------------F-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 246 (423)
+..+...+.+.|++++|++.|++..+.- . ..+...|..+..+|.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4444555555555555555555554310 0 1123444555555555555555555555554432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 302 (423)
.+...|..+..+|...|++++|.+.+++..+.. +.+...+..+...+...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 234445555555555555555555555554431 1133344444444444444333
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=1.8e-05 Score=58.54 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502 122 QNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199 (423)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 199 (423)
|++++|+..|++..+.+. +.+...+..+..+|...|++++|+..|++..+. .+-+...+..+..++.+.|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444320 112234444444444555555555555444431 1122334444444445555555555
Q ss_pred HHHHHHHH
Q 014502 200 KWYAANIA 207 (423)
Q Consensus 200 ~~~~~m~~ 207 (423)
+.+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00021 Score=66.80 Aligned_cols=124 Identities=9% Similarity=0.008 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--------------IPILEKVLEGLCARRKLDRVKSFLKFLLGGG 279 (423)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 279 (423)
...|..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|...+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33455555666666666666666666554211100 3556666667777777777777777776643
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502 280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341 (423)
Q Consensus 280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~ 341 (423)
+.+...|..+..+|...|++++|...|+++.+. .|+.... +..+...+...++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a-~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAA-RLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CH-HHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 234556666667777777777777777776663 3433322 566666666666665554
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00017 Score=56.60 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 215 QTYESLIHGSLKARDFDSVDRFYEEMMSL-------GI----------IPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
..+......+.+.|++++|+..|++.... +- +.+...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666666666666666665432 00 01123444444555555555555555555554
Q ss_pred CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
.. +.+...|..+..+|...|++++|...|++..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 22344444555555555555555555555544
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00028 Score=63.94 Aligned_cols=85 Identities=5% Similarity=-0.046 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV 363 (423)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 363 (423)
..+|..+..+|.+.|++++|...+++..+. .|+.... |..+..+|...|++++|.+.|++..+ +.|.++..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l 347 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKA-LYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHH-HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 456666777777777777777777777763 3443322 66677777777777777777777776 345556666666
Q ss_pred HHHHhhcccc
Q 014502 364 ICSYFRCAAY 373 (423)
Q Consensus 364 ~~~~~~~~~~ 373 (423)
...+...++.
T Consensus 348 ~~~~~~~~~~ 357 (370)
T 1ihg_A 348 LKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.82 E-value=0.002 Score=61.80 Aligned_cols=171 Identities=9% Similarity=-0.147 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD----------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR- 263 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 263 (423)
-++|++.++++...... +..+|+.--..+.+.|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35566666666665433 44555554444444444 677777777766543 234455665555566666
Q ss_pred -CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-------
Q 014502 264 -KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG-RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS------- 334 (423)
Q Consensus 264 -~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~------- 334 (423)
+++++.+.++++.+.. +-+..+|+.-...+.+.| .++++.+.++++.+.+ |..... |+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~sa-W~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSS-WHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHH-HHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccH-HHHHHHHHHhhccccccc
Confidence 5577777777777653 235666666666666666 6777777777776643 443332 65555554442
Q ss_pred -------CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc
Q 014502 335 -------DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY 373 (423)
Q Consensus 335 -------g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 373 (423)
+.++++++.+++... +.|.+...|......+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCc
Confidence 456888888888887 5577889998888888776654
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00033 Score=65.64 Aligned_cols=91 Identities=4% Similarity=-0.103 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCcc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHHHHH
Q 014502 258 GLCARRKLDRVKSFLKFLLGG---GWKI----NENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLLHFF 324 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~---g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~~~~ 324 (423)
.+...|++++|..++++.++. -+.+ ...+++.|...|...|++++|..++++..+ .|. .|+... .+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM-AV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH-HH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence 345779999999988887643 1112 245788899999999999999998888654 232 233333 38
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 325 SGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 325 ~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+.|...|...|++++|+.++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999887664
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00024 Score=66.62 Aligned_cols=127 Identities=8% Similarity=0.022 Sum_probs=95.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-cc-CHHhHH
Q 014502 223 GSLKARDFDSVDRFYEEMMSL---GIIP---S-IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----GW-KI-NENMAQ 288 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~---~~~p---~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~-~~-~~~~~~ 288 (423)
.+...|++++|+.++++..+. -+.| + ..+++.+...|...|++++|..++++.++. |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887542 2222 2 357889999999999999999999987642 21 12 245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 289 KLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.|...|...|++++|..++++..+ .|..-.....+.+.+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998764 3432222233467788888899999999999999876
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00037 Score=53.95 Aligned_cols=94 Identities=7% Similarity=-0.075 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--------S-----KTYDAFISGFSSLGNVDAMNKWYAANIAA--- 208 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 208 (423)
.+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3444455556666666666666666541 222 1 14555555555555555555555555543
Q ss_pred --CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 209 --GFSV-NVQTY----ESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 209 --~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.+.| +...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 0112 23344 444555555555555555555443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=0.00012 Score=65.52 Aligned_cols=148 Identities=11% Similarity=-0.024 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 344666777777888888888888876654 233221 11223333332211 1 125666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCH
Q 014502 188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEG-LCARRKL 265 (423)
Q Consensus 188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~ 265 (423)
+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776542 25667777777777777888777777776543 233 2333333333 2234556
Q ss_pred HHHHHHHHHHHhC
Q 014502 266 DRVKSFLKFLLGG 278 (423)
Q Consensus 266 ~~a~~~~~~~~~~ 278 (423)
+.+...|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6677777777653
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=0.0001 Score=65.90 Aligned_cols=149 Identities=9% Similarity=-0.001 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH 222 (423)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 222 (423)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 445677777888889999999999887762 344332 223334444332221 237888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH-HHhcCCHH
Q 014502 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVD 301 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~ 301 (423)
+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 3467889999999999999999999999998753 2234455555544 23456677
Q ss_pred HHHHHHHHHHhC
Q 014502 302 ELEEQLETLTKC 313 (423)
Q Consensus 302 ~a~~~~~~~~~~ 313 (423)
.+...|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888899888764
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=0.00065 Score=52.56 Aligned_cols=63 Identities=8% Similarity=-0.051 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCchHHHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFF----SGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.|..+..++.+.|++++|...+++..+. .+.|+.... | ...-.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A-~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL-WISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH-HHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777778888888888877777763 115655433 6 7778888888888888888888875
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=0.0014 Score=49.93 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHHH
Q 014502 193 GNVDAMNKWYAANIA 207 (423)
Q Consensus 193 ~~~~~a~~~~~~m~~ 207 (423)
+++++|+++|++..+
T Consensus 75 ~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 75 KDLRKAAQYYSKACG 89 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 344444444444333
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.003 Score=47.98 Aligned_cols=112 Identities=13% Similarity=-0.073 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCH
Q 014502 84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDV 159 (423)
Q Consensus 84 ~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 159 (423)
.++++|.+. +++..+.+.++.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 9 ~d~~~A~~~----~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQY----YVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHH----HHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHH----HHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 356777777 5555566655544 7788888889999999999999875 78888999999988 8999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 014502 160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGF 210 (423)
Q Consensus 160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 210 (423)
++|++.|++..+ . -+...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 78 ~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 78 RKAAQYYSKACG-L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999988 3 467778888888888 8899999999999888763
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=8.6e-05 Score=53.87 Aligned_cols=61 Identities=7% Similarity=-0.021 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
.|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 12333444444444444444444444444444
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.57 E-value=0.0047 Score=59.23 Aligned_cols=171 Identities=9% Similarity=-0.043 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502 85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN----------VPFAMHVFTSMEAQGIKPDSAVFNSLICACL 154 (423)
Q Consensus 85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 154 (423)
..++|++. ++++...++.+..+|+.--.++...|+ ++++.+.++.+.+...+ +..+|+.-..++.
T Consensus 44 ~~eeal~~----~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 44 LDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp CSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34566777 566777777777777776666666665 78888888888876433 6778888888888
Q ss_pred ccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 014502 155 CSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---- 227 (423)
Q Consensus 155 ~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 227 (423)
+.+ +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 888 6688888888887732 346667777666677777 788888888888776644 777777766666553
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 228 ----------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 228 ----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
+.++++++.+++..... +-|...|.-.-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44677777777666543 2344555555555555554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.0003 Score=51.54 Aligned_cols=74 Identities=15% Similarity=0.013 Sum_probs=47.9
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+++.....+.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 8 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555566667777777777777777777777766653 22455666667777777777777777766654
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.001 Score=45.90 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502 285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364 (423)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 364 (423)
..+..+...+...|++++|...+++..+.. |+.... +..+...|...|++++|...+++..+. .|.++..+..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 345555556666666666666666665532 322211 555666666666666666666666552 344455555554
Q ss_pred HHHh
Q 014502 365 CSYF 368 (423)
Q Consensus 365 ~~~~ 368 (423)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00071 Score=48.82 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
...|..+...+...|++++|++.|++..+. .+.+...+..+..++.+.|++++|++.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555555555554431 122334444444555555555555555555444
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0023 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=10.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 014502 146 FNSLICACLCSGDVVTALSLFEIMV 170 (423)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~ 170 (423)
+..+...+...|++++|+..|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~ 36 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKAL 36 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.0017 Score=47.28 Aligned_cols=62 Identities=10% Similarity=-0.043 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 179 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555555444321 34444444455555555555555554443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0006 Score=48.54 Aligned_cols=64 Identities=11% Similarity=-0.050 Sum_probs=35.8
Q ss_pred CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555566666666666666666665554211 344555555666666666666666555543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0013 Score=46.74 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+...+..+..+|...|++++|...|++..+.+ |+.... |..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGT-YYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666665532 332221 55566666666666666666665544
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.20 E-value=0.001 Score=51.39 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHh
Q 014502 264 KLDRVKSFLKFLLG 277 (423)
Q Consensus 264 ~~~~a~~~~~~~~~ 277 (423)
++++|.+.|++.++
T Consensus 106 ~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 106 NFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45555555555554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.18 E-value=0.00078 Score=52.01 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=63.5
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502 82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV----------PFAMHVFTSMEAQGIKPDSAVFNSLIC 151 (423)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~ 151 (423)
+.+.+++|.+. +++..+..+.+...|..+..++.+.+++ ++|+..|++..+.... +..+|..+..
T Consensus 14 r~~~feeA~~~----~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQD----AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHhHHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 34456777777 4555566667788888777777777664 4777777777765322 4557777777
Q ss_pred HHHccC-----------CHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502 152 ACLCSG-----------DVVTALSLFEIMVSSEEYKPNSKTYDAFIS 187 (423)
Q Consensus 152 ~~~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 187 (423)
+|...| ++++|++.|++..+ +.|+...|..-+.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~ 132 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 776653 67777777777765 3566555544443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.10 E-value=0.031 Score=56.04 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=68.9
Q ss_pred hcCCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502 119 GKVQNVPFAMH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA 197 (423)
Q Consensus 119 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 197 (423)
...+++++|.+ ++..+ |+......++..+.+.|..++|+++.++-.. -.......|++++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHH
Confidence 34566666655 43211 1122336666666677777777655532111 1233455677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 77765432 2566777777777777777777777776532 22333444445555554444444333
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.05 Score=48.27 Aligned_cols=74 Identities=15% Similarity=-0.001 Sum_probs=44.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502 176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253 (423)
Q Consensus 176 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 253 (423)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4455566655555555566677766666666654 56555655566666667777766666665553 35555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.021 Score=50.70 Aligned_cols=74 Identities=8% Similarity=-0.125 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH
Q 014502 211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ 288 (423)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 288 (423)
..+..+|..+...+...|++++|...+++....+ |+...|..+-..+...|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4467777777766777788888888888887765 7777777777778888888888888888877 356666654
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.025 Score=56.82 Aligned_cols=154 Identities=6% Similarity=0.010 Sum_probs=103.5
Q ss_pred HHHccCCHHHHHH-HHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 152 ACLCSGDVVTALS-LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230 (423)
Q Consensus 152 ~~~~~g~~~~A~~-~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 230 (423)
.....+++++|.+ ++..+ |+......++..+.+.|..++|.++.++-. .-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 3345788999877 55222 212234778888999999999988763211 113345678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986443 5678999999999999999999999998754 334555555566666665555555
Q ss_pred HhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502 311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM 347 (423)
Q Consensus 311 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 347 (423)
...|. ++.....|.+.|++++|++++.++
T Consensus 734 ~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTGK--------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTC--------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCc--------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54332 444455566666777666666554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.011 Score=54.42 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCC---CC-HhHHHHHHHHHhcCCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHHH
Q 014502 83 SSSPKKAQLVLEWRLDKMLKGNE---SC-LDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----GI-KPD-SAVFNSLIC 151 (423)
Q Consensus 83 ~~~~~~a~~~~~~~~~~m~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~li~ 151 (423)
.|++++|..+++..++...+... |+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777776554443322211 22 355677777777777777777777665431 21 122 235666666
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 014502 152 ACLCSGDVVTALSLFEIMV 170 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~ 170 (423)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.024 Score=52.16 Aligned_cols=94 Identities=11% Similarity=-0.008 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---CccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHH
Q 014502 255 VLEGLCARRKLDRVKSFLKFLLGGG---WKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLL 321 (423)
Q Consensus 255 li~~~~~~g~~~~a~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~ 321 (423)
.+..+.+.|++++|..++++.++.. +.|+ ..+++.+...|...|++++|..+++++.+ .|. .|+...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667889999999998887541 1222 34788888899999999999998888764 232 343333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 322 HFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.++.|...|...|++++|+.++++..+
T Consensus 373 -~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 -QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 388889999999999999998887654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.011 Score=54.41 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHhC---CCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHHHHHHHH
Q 014502 261 ARRKLDRVKSFLKFLLGG---GWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLLHFFSGI 327 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~~~~~~l 327 (423)
..|++++|..++++.++. -+.|+ ..+++.|...|...|++++|..++++..+ .|. .|+..+ .++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS-MWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH-HHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHH
Confidence 357888898888887642 12222 35788889999999999999999888764 232 344333 38889
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 014502 328 IRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 328 i~~~~~~g~~~~a~~~~~~m~~ 349 (423)
...|...|++++|+.++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.13 Score=40.32 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD 266 (423)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (423)
....+.|+++.|.++.+++ -+...|..|.+...+.|+++-|.+.|..... |..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445667777777766554 2566777777777777777777777765432 333444455566666
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
...++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66655555554441 333444455667777777776443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.027 Score=51.84 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CccC-HH
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSL---GIIPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G-WKIN-EN 285 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g-~~~~-~~ 285 (423)
.+..+.+.|++++|+.++++..+. -+.|+ ..+++.+...|...|++++|..++++.++. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355677889999999999988753 12232 356888999999999999999999987642 2 1222 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999988754
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.27 Score=38.51 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=55.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL 303 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a 303 (423)
..+.|+++.|.++.+++ -+...|..+.+.....|+++-|.+.|....+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665544 2455666666666666666666666665443 33344445555666555
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502 304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR 346 (423)
Q Consensus 304 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 346 (423)
.++-+.....|- ++.....+...|+++++.+++.+
T Consensus 80 ~kla~iA~~~g~--------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED--------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 544444443331 44445555556666666666644
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.015 Score=40.66 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=19.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 190 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
.+.|++++|++.|++..+.... +.. .|..+..+|...|++++|.+.|++..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444333211 223 33334444444444444444444433
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.25 Score=36.51 Aligned_cols=138 Identities=10% Similarity=-0.009 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV 340 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a 340 (423)
..|..++..++..+..+.. +..-||-+|.-....-+-+-..++++.+-+. .|. ..+|++...
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi------------s~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL------------DKCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG------------GGCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc------------HhhhcHHHH
Confidence 4566677777776666532 3344444544444444444445555544331 111 123444444
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
...+-.+ +. +...+...+.....+|..+.++.+..-+....+|++...-.+..+|.+.|+..+|.+++.+.-++
T Consensus 81 i~C~~~~---n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN---NT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT---TC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh---cc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4433332 11 14455555666666666665554444433344667777777777777777777777777777777
Q ss_pred CC
Q 014502 421 EY 422 (423)
Q Consensus 421 g~ 422 (423)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 75
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.17 E-value=0.036 Score=38.61 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.+.+.|++++|...+++..+.. |+.....|..+...|...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555544422 322110144444445555555555555555444
No 222
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.75 Score=42.38 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHH
Q 014502 253 EKVLEGLCARRKLDRVKSFLKFLLGG--GWKIN---ENMAQKLVKCYCELGRVDELEEQLETLTK----CNQSPEVLLHF 323 (423)
Q Consensus 253 ~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~ 323 (423)
..+...+...|++.+|.+++..+... |..+. ...+...++.|...+++..|..+++++.. ....|+.....
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666666432 21111 22455556666777777777766666532 22223333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|...+..+...+++.+|...|.+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56666666677777777666666543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.92 E-value=0.087 Score=36.52 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 242 (423)
++|.+++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444322 344444444444444555555555544444
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.91 E-value=0.12 Score=39.45 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc--CHHhHHHHHHHHHhcCCHHHHHH
Q 014502 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR---KLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELEE 305 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~ 305 (423)
..+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..++++..+.. .| ....+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444444332 44444444444455544 3345555555555432 12 12222233344455555555555
Q ss_pred HHHHHHh
Q 014502 306 QLETLTK 312 (423)
Q Consensus 306 ~~~~~~~ 312 (423)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.73 E-value=0.11 Score=36.81 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
+..+..+|.+.|++++|...+++..+
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44445555555555555555555444
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.72 E-value=0.41 Score=35.37 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ 315 (423)
Q Consensus 250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 315 (423)
..+...++.+...|+.++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555554332 344555555555566666666666666655555554
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.71 E-value=0.2 Score=38.20 Aligned_cols=69 Identities=6% Similarity=-0.022 Sum_probs=33.3
Q ss_pred hCCCCCHhHHHHHHHHHhcCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 102 KGNESCLDEYACLIALSGKVQ---NVPFAMHVFTSMEAQGIKP--DSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
+.+.++..+.-.+.-++++.+ +++++..+|++..+.. .| +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555544 4445555555555542 12 123333344444555555555555555554
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.61 E-value=0.27 Score=33.95 Aligned_cols=47 Identities=6% Similarity=0.000 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
.++|..+|++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444443211 233444444444444444444444444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.52 E-value=0.13 Score=36.42 Aligned_cols=70 Identities=10% Similarity=-0.050 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502 249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGG------WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL 320 (423)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 320 (423)
...+..+...+...|+++.|...++...+.- -.+...++..+..+|.+.|+++.|...++++.+ ..|+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3344455555556666666666666554320 112345666677777777777777777777766 345543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.49 E-value=0.38 Score=41.01 Aligned_cols=110 Identities=7% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHHHHH-HHcc--C------CHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 014502 143 SAVFNSLICA-CLCS--G------DVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSL-----GNVDAMNKWYAAN 205 (423)
Q Consensus 143 ~~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m 205 (423)
...|..++.+ ++.. | ....|...+++..+ +.|+ ...|..|...|.+. |+.++|.+.|++.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3466666653 3332 3 24567777777776 3566 55788898889884 9999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 014502 206 IAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGII--PSIPILEKV 255 (423)
Q Consensus 206 ~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--p~~~~~~~l 255 (423)
.+.+..-+..++......+++. |+.+++.+.+++....... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9875443577777888888884 9999999999999887665 665444433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.29 E-value=0.87 Score=38.79 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 014502 195 VDAMNKWYAANIAAGFSVN---VQTYESLIHGSLKA-----RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKL 265 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 265 (423)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35677777777765 455 56788888889884 99999999999998754212366777778888884 999
Q ss_pred HHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 266 DRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLT 311 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 311 (423)
+++.+.+++.+..... |+....+.+- -++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence 9999999999987665 5544444332 355555555443
No 232
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.01 E-value=1.6 Score=45.73 Aligned_cols=210 Identities=9% Similarity=0.035 Sum_probs=126.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI------------------- 245 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------- 245 (423)
++..+.+.+..+.+.++.... +.+...--.+..+|...|++++|.+.|++... |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 445555566666555443322 22444444566788899999999999966421 11
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 246 ----IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 246 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
..-..-|..++..|-+.+.++.+.++-....+..-+.+. ..|..+.+.+...|++++|...+-.+......-
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 111234677888888899999998888877654322222 257888999999999999999998877644332
Q ss_pred chHHHHHHHHHHHHHhcCChhHH------------HHHHHHHHhCC-CCCCChHhHHHHHHHHhhcccc-chHHHHHHHH
Q 014502 318 EVLLHFFSGIIRLYALSDRLDDV------------EYSVGRMGKQG-LSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHI 383 (423)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 383 (423)
+ . ...|+...+..|+.+.- .+++..-.+.. .....|..|..|=.-+..+|+. .|+.++.+..
T Consensus 972 ~--c--Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 972 S--C--LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp H--H--HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred H--H--HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 2 2 66677777777665543 33332221111 1111255566666666677777 4666666554
Q ss_pred hC-C------Cc----ccHHHHHHHHHHHHhc
Q 014502 384 KG-S------YK----LRRATYDFLVAGYRRA 404 (423)
Q Consensus 384 ~~-~------~~----p~~~~~~~l~~~~~~~ 404 (423)
.+ + .. .-...|..+|+++.-.
T Consensus 1048 ~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1048 SRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 21 0 01 1134577777777655
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=3.8 Score=37.63 Aligned_cols=192 Identities=13% Similarity=0.079 Sum_probs=101.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCC--CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH---
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACL--- 154 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~--- 154 (423)
+..+++..|++.+--+-++.+.... ........++..|.+.|+++...+.+..+... |.. ......++..+.
T Consensus 27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYL 104 (445)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHH
Confidence 4557778888775332222221211 35666788888888888888887777665543 322 222233333222
Q ss_pred -ccCCHHH--HHHHHHHHHhcCCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHH
Q 014502 155 -CSGDVVT--ALSLFEIMVSSEEYKPN--------SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFSVN---VQTYE 218 (423)
Q Consensus 155 -~~g~~~~--A~~~~~~m~~~~~~~p~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~ 218 (423)
.....+. -..+.+... .+... ......|...+...|++.+|..++.++... |.... ...|.
T Consensus 105 ~~~~~~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222221 122222221 11111 112245667777777888877777776542 22211 24555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 219 SLIHGSLKARDFDSVDRFYEEMMS----LGIIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 219 ~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
..+..|...+++.+|..++++... ....|+. ..|...+..+...+++.+|...|.++..
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666777777777777777776532 2222222 2345555666667777777776666643
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.63 E-value=1.9 Score=45.12 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 292 (423)
|.-++..+-+.|.++.+.++-+...+..-.-+. ..|..+.+++...|++++|...+-.+.....+ ......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 445555555566666665555444332111111 13555566666666666666655555443322 233444554
Q ss_pred HHHhcCC
Q 014502 293 CYCELGR 299 (423)
Q Consensus 293 ~~~~~g~ 299 (423)
.++..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.35 E-value=1.3 Score=43.48 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=39.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502 257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL 310 (423)
Q Consensus 257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 310 (423)
+.|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455678888888888887775 2445668888888888888888888888776
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.28 E-value=1.4 Score=32.25 Aligned_cols=23 Identities=4% Similarity=-0.194 Sum_probs=11.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 014502 327 IIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 327 li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|.-++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444455555555555555544
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.04 E-value=0.00018 Score=65.32 Aligned_cols=265 Identities=8% Similarity=0.035 Sum_probs=175.7
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF 185 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 185 (423)
..+.+|..|..+..+.+.+.+|++.| .+. -|+..|..+|.+..+.|.+++-+..+.-.++ .. .+...=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~--ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TC--CSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hh--cccccHHHH
Confidence 45677888888888888888887766 222 2777888888888888998888888776655 32 333444578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL 265 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 265 (423)
+-+|++.+++.+.++++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 88888888876544432 246666677788888888888888777755432 33344556667777
Q ss_pred HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
..|.+.- .+ .-+..||-.+-.+|...+.+.-|.-.--.++- .|+. ...++..|-..|.+++.+.+++
T Consensus 187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade----L~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE----LEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC----CSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH----HHHHHHHHHhCCCHHHHHHHHH
Confidence 7665432 22 23567888888899999998887665544442 3443 2346777899999999999998
Q ss_pred HHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCc-c-------cHHHHHHHHHHHHhcCChhHHH
Q 014502 346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYK-L-------RRATYDFLVAGYRRAGLSGKLD 411 (423)
Q Consensus 346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p-------~~~~~~~l~~~~~~~g~~~~a~ 411 (423)
.-. |....+...|+-|.-.|++-.--.-.+.+ ++--..+. | ....|.-++-.|.+-..++.|.
T Consensus 254 agl--glErAHmGmFTELaILYsKY~PeKlmEHl-klf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 254 AAL--GLERAHMGMFTELAILYSKFKPQKMREHL-ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHT--TSTTCCHHHHHHHHHHHHSSCTTHHHHHH-TTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHh--CCCchhHHHHHHHHHHHHhcCHHHHHHHH-HHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 876 45556788889888888876422212221 11111111 1 2344666677777666666554
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.88 E-value=0.81 Score=33.47 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHH
Q 014502 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR---VKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDEL 303 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a 303 (423)
.....+.+-|.+....| .|+..+--.+..++.+..+... ++.+++++.+.+.+ -.....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33445555555554444 3666665566667777766555 77777777776421 1222333455677888888888
Q ss_pred HHHHHHHHhCCCCCchH
Q 014502 304 EEQLETLTKCNQSPEVL 320 (423)
Q Consensus 304 ~~~~~~~~~~~~~p~~~ 320 (423)
.+.++.+.+ +.|+..
T Consensus 94 ~~~~~~lL~--~eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNN 108 (126)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHH--hCCCCH
Confidence 888888887 446543
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.83 E-value=2 Score=38.78 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=31.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI 206 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 206 (423)
..++..+...|++++|+..+..+... -+-+...|..+|.++.+.|+..+|++.|++..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555556666665555555442 13345555556666666666666665555543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.79 E-value=1 Score=34.04 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCHhHHHHHHHHHhcCCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHHH------HccCCHHHHHHHHHHHHhc
Q 014502 106 SCLDEYACLIALSGKVQNV------PFAMHVFTSMEAQGIKPDSA-VFNSLICAC------LCSGDVVTALSLFEIMVSS 172 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~~------~~~g~~~~A~~~~~~m~~~ 172 (423)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...|... ...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666776 6666777766653 444421 111111111 1236777777777777652
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV 212 (423)
Q Consensus 173 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 212 (423)
.-.- ...|-..-..-.+.|+++.|.+++......+..|
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1122 5555555566667777777777777777766553
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.13 E-value=0.85 Score=31.60 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 277 (423)
.+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-+..
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555554443
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.91 E-value=2.1 Score=32.29 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 280 (423)
+++++|.++|+.+.+..-.- ...|......=.+.|+...|.+++......+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 45555555555554421111 33344444444455666666666665555543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.90 E-value=12 Score=37.83 Aligned_cols=259 Identities=10% Similarity=0.039 Sum_probs=128.1
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------SVNVQTYESLIH 222 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~li~ 222 (423)
+....|+.++++.++..... .+-..+. ..-..+.-+....|..+++..++.......- .+....-.++--
T Consensus 383 GlIh~g~~~~gl~~L~~yL~-~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLP-GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTST-TSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34456777777666665542 1101122 2223333445566666667777766554321 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH--Hhc
Q 014502 223 GSLKARD-FDSVDRFYEEMMSLGIIPSIPILEK--VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--CEL 297 (423)
Q Consensus 223 ~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~ 297 (423)
+++-.|. -+++.+.+..+....- +....... +...+.-.|+.+....++..+.+.. +..+...+..++ ...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 3333332 2455565555554321 11111222 2223445677777777777776532 333333343343 367
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHH
Q 014502 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377 (423)
Q Consensus 298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 377 (423)
|+.+.+..+++.+... ..|......-.++.-+|+..|+.....+++..+.+... ++......+.-++...|+.+...
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~--d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN--DDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc--HHHHHHHHHHHHhhccCCHHHHH
Confidence 8888888888777652 22332211112344567777887777778888776421 11222233344444456655443
Q ss_pred HHHHHHhCCCcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 014502 378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLS-GKLDSVINEMK 418 (423)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 418 (423)
.+.+.+.....|...--..+.-+....|+. .++..++..+.
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 333433333345544444555555555554 46777777664
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.84 E-value=0.92 Score=40.93 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIP 250 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 250 (423)
..++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. .|+.|...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344555556666666666666555543 22555666666666666666666666655432 35555543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.31 E-value=2.6 Score=29.22 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=52.7
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502 258 GLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (423)
Q Consensus 258 ~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 329 (423)
.|.+.. +.-++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+.-.. ..+ |..+++
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~i--Y~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEI--YPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTH--HHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhh--HHHHHH
Confidence 333444 556778888888888899999999999999999999999999999988654322 333 666654
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.81 E-value=1.5 Score=43.14 Aligned_cols=128 Identities=8% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccC-CHHHHHHHHHHHHhc-----CCCCCCH-H
Q 014502 111 YACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAV--FNSLICACLCSG-DVVTALSLFEIMVSS-----EEYKPNS-K 180 (423)
Q Consensus 111 ~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~-----~~~~p~~-~ 180 (423)
...++..+...++ ++.|..+|+++.+. .|...+ ...+|..+...+ +--+|.+++.+..+. ...++.. .
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 4556666666666 58899999999886 343332 223333333332 233455555554320 0112211 1
Q ss_pred ----------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 181 ----------TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 181 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
..+.=...|...|+++.|+++-++....-+ -+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111113456678999999999999887632 257899999999999999999999988773
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.38 E-value=1.3e-05 Score=72.55 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221 (423)
Q Consensus 142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 221 (423)
.+..|..+..+....+++.+|++-|- +. -|...|..+|....+.|.+++-++++...++..- +...=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 34566666666666666666655442 11 2444566666666666666666666655544422 233334666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD 301 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 301 (423)
-+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 66666666554433321 35555555566666666666665555443322 233444455666666
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch-HHHHH
Q 014502 302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFL 380 (423)
Q Consensus 302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 380 (423)
.|.+.-++. .+..+ |..+..+|...+.+.-|.-.--.+.- .++....++..|...|.++. +.++.
T Consensus 188 ~AVdaArKA------ns~kt--WKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 188 AAVDGARKA------NSTRT--WKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp SSTTTTTTC------CSSCS--HHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHhc------CChhH--HHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 655433222 22223 77777788888877766555444432 14444567777788887754 44444
Q ss_pred HHHhCCCcccHHHHHHHHHHHHhc
Q 014502 381 DHIKGSYKLRRATYDFLVAGYRRA 404 (423)
Q Consensus 381 ~~~~~~~~p~~~~~~~l~~~~~~~ 404 (423)
.-+. .-....-.|+-|...|++-
T Consensus 254 aglg-lErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 254 AALG-LERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHTT-STTCCHHHHHHHHHHHHSS
T ss_pred HHhC-CCchhHHHHHHHHHHHHhc
Confidence 3331 1234566777777777764
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.22 E-value=1.9 Score=31.68 Aligned_cols=60 Identities=7% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
.+..+-++.+...++.|++......+.+|-+.+|+..|.++++-+..+ +.+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344455555555566666666666666666666666666666655543 223333454443
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.54 E-value=3.4 Score=37.79 Aligned_cols=99 Identities=8% Similarity=-0.113 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCchHHHHHH
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTK---CNQSPEVLLHFFS 325 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~~ 325 (423)
+...+...|.+.|+++.|.+.+.++...... .-...+-.++..+...+++..+...++++.. .+..|+.......
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566777778888888888888887764222 2244666677777778888888877777654 3333333332212
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 014502 326 GIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 326 ~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
.-...+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222233456677777777766554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.39 E-value=23 Score=35.77 Aligned_cols=252 Identities=9% Similarity=0.032 Sum_probs=127.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhC---CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI-------KPDSAVFNSLI 150 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li 150 (423)
...++.++++.. ++..... +.+....-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 385 Ih~g~~~~gl~~----L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 385 IHKGNLLEGKKV----MAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HTSSCTTTHHHH----HTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hccCchHHHHHH----HHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 466777777777 3333321 112223333444444555555567776665544210 01111222333
Q ss_pred HHHHccCC-HHHHHHHHHHHHhcCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHH
Q 014502 151 CACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI--HGSL 225 (423)
Q Consensus 151 ~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--~~~~ 225 (423)
-+++-.|. -+++.+.+..+..... +...... +|...+...|+-+....++..+.+.. +......+. -++.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 33333343 2355566665554111 1111122 22333456677777777777666542 222233333 3444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH--HHhcCCH
Q 014502 226 KARDFDSVDRFYEEMMSLGIIPSIPILE---KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC--YCELGRV 300 (423)
Q Consensus 226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~ 300 (423)
-.|+.+.+..+.+.+.... .|.. -|. ++.-+|+..|+.....+++..+.... +..+-...+.+ +...|+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSC
T ss_pred hCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCH
Confidence 6788888888888877632 2222 233 23345667788877777888887642 22233333333 3346776
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL-DDVEYSVGRMGK 349 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 349 (423)
+.+.++++.+.+.+ .|.... -..+.-+....|.. .++.+++..+..
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~--gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRC--GTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHH--HHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-CHHHHH--HHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77777776665533 344433 23344444445554 567778888764
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.30 E-value=6.1 Score=29.07 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR 329 (423)
Q Consensus 264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 329 (423)
|.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++.+.-.. ..+ |..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~i--Y~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEI--YPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTH--HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhh--HHHHHH
Confidence 455677777888888899999999999999999999999999999988754322 333 666654
No 252
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.32 E-value=2 Score=36.21 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=10.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCC
Q 014502 332 ALSDRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 332 ~~~g~~~~a~~~~~~m~~~~~~ 353 (423)
+..|+.....++.+.+.+.|..
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCC
T ss_pred HHccccchHHHHHHHHHHcCCC
Confidence 3344444445555555555544
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.06 E-value=28 Score=33.43 Aligned_cols=77 Identities=8% Similarity=0.002 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 191 (423)
+.-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-.... .....++.++..+.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK--SQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS--CCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHH
Confidence 3445555566666655554432 133555555566666666776666666666654222 223356666666666
Q ss_pred cCCH
Q 014502 192 LGNV 195 (423)
Q Consensus 192 ~~~~ 195 (423)
.|.+
T Consensus 149 ~g~l 152 (618)
T 1qsa_A 149 SGKQ 152 (618)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 5554
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.17 E-value=7.4 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 014502 191 SLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 191 ~~~~~~~a~~~~~~m~~~ 208 (423)
+.|..+++...+.++...
T Consensus 81 rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 81 RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHTCHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 334444444444444333
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.04 E-value=5.3 Score=30.68 Aligned_cols=69 Identities=6% Similarity=-0.041 Sum_probs=37.4
Q ss_pred ccCCcChhhHHHH--HHH-HhcCCHHHHHHHHHHHHHHHhhCCCCC-------HhHHHHHHHHHhcCCChhHHHHHHHHH
Q 014502 65 FAFNSSQFSWDAL--ITS-LQSSSPKKAQLVLEWRLDKMLKGNESC-------LDEYACLIALSGKVQNVPFAMHVFTSM 134 (423)
Q Consensus 65 ~g~~p~~~~~~~l--i~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m 134 (423)
.|..|....|+.+ +.. +..+.++.|.-+...+. .+.+. .|| ..++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLl-Sl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLL-TLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4555655544433 223 57777887777754322 22211 222 235677788888999999999999886
Q ss_pred H
Q 014502 135 E 135 (423)
Q Consensus 135 ~ 135 (423)
.
T Consensus 90 L 90 (167)
T 3ffl_A 90 L 90 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.84 E-value=3.9 Score=34.37 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCHHHHHHHHH
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVDELEEQLE 308 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 308 (423)
..+......++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444555555666655443221 1122334445566654444443
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.20 E-value=7 Score=26.96 Aligned_cols=50 Identities=18% Similarity=0.048 Sum_probs=23.1
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502 153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG 209 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 209 (423)
+...|++++|..+.+.+. .||...|-+|- -.+.|..+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 35555443332 234455555555554554443
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.59 E-value=29 Score=31.08 Aligned_cols=168 Identities=7% Similarity=-0.055 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHH-
Q 014502 143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTY- 217 (423)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~- 217 (423)
......+...|.+.|+.++..+++...+.-.+..|- ......++..+.... ..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888899999999999998887653222232 234567777777643 344444444444332101 11233
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHH
Q 014502 218 -----ESLIHGSLKARDFDSVDRFYEEMMSL--GIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINEN 285 (423)
Q Consensus 218 -----~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~ 285 (423)
..++..|...|++.+|.+++.++.+. ..... ...|..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25778888889999988888887652 21111 234556667778888888888888777543 2324443
Q ss_pred hHHHH----HHHHH-hcCCHHHHHHHHHHHH
Q 014502 286 MAQKL----VKCYC-ELGRVDELEEQLETLT 311 (423)
Q Consensus 286 ~~~~l----i~~~~-~~g~~~~a~~~~~~~~ 311 (423)
+...+ ...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33221 22334 6788888877776654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.33 E-value=14 Score=33.75 Aligned_cols=119 Identities=11% Similarity=-0.030 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502 195 VDAMNKWYAANIAAG-FSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKS 270 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~ 270 (423)
+++-.+......+.. ... -..+...+...|.+.|++++|.+.|.++... +..--...+-.++..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444432 222 2236778999999999999999999999864 333345678888999999999999999
Q ss_pred HHHHHHh---CCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502 271 FLKFLLG---GGWKINENM--AQKLVKCYCELGRVDELEEQLETLTKC 313 (423)
Q Consensus 271 ~~~~~~~---~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~ 313 (423)
.+.++.. .+-.|+... ...-...+...+++..|...|-+....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 9998754 232333221 111122234578899998888776654
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.08 E-value=11 Score=26.00 Aligned_cols=78 Identities=12% Similarity=-0.044 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|..+.. .+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 11111112234555566666665544332 455555544432 24555555555555
Q ss_pred HHHhCC
Q 014502 274 FLLGGG 279 (423)
Q Consensus 274 ~~~~~g 279 (423)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.51 E-value=11 Score=26.08 Aligned_cols=78 Identities=10% Similarity=-0.115 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK 273 (423)
Q Consensus 194 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 273 (423)
..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|..+.. .+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554432 11111122234555666666665543332 455555554432 35555555555555
Q ss_pred HHHhCC
Q 014502 274 FLLGGG 279 (423)
Q Consensus 274 ~~~~~g 279 (423)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555554
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.94 E-value=30 Score=30.14 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502 213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258 (423)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 258 (423)
|......+...|.+.+++.+|..-|- .|-.+....|..++.-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 55666677777777787777776651 2323333555554433
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.41 E-value=8.7 Score=29.50 Aligned_cols=123 Identities=8% Similarity=0.095 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HH
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNV-------QTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSI-PI 251 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~-~~ 251 (423)
+-.=++.+...+.++.|+-+.+-+... +..|+. .++..+.+++...|++..|...|++.... ..-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333456666677777776666654432 112231 24445556677777777777777664321 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
...+- ....... ......+...--.+..+|.+.++.++|..+++.+..+.-.|
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 11110 0000000 00112233333446677788888888888877764433333
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.99 E-value=33 Score=29.56 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCccCHHhHHHHH
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS----FLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~g~~~~~~~~~~li 291 (423)
.|.++..=|.+.+++++|++++..-. ..+.+.|+...|.+ +++-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444555566666666666543221 12233444433333 344445556666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502 292 KCYCELGRVD-ELEEQLETLT----KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG 345 (423)
Q Consensus 292 ~~~~~~g~~~-~a~~~~~~~~----~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~ 345 (423)
..+.....-+ .-.++++.+. +.|..+.-...++..+...|.+.|++.+|+.-|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6555533211 1123333332 2322222222337778888888888888877653
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.23 E-value=19 Score=26.43 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS 171 (423)
Q Consensus 124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 171 (423)
..+++.+++++.+.+..-....+--+.-++.+.|++++|.+..+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445566666655543111233444455566666666666666666654
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.04 E-value=35 Score=29.38 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 014502 76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155 (423)
Q Consensus 76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 155 (423)
.+=.....|++=+|.+.++ ++..-|.+.+++++|.+++..--. .+.+
T Consensus 19 rl~~~I~~G~yYEAhQ~~R------------------tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~ 65 (312)
T 2wpv_A 19 RFENKIKAGDYYEAHQTLR------------------TIANRYVRSKSYEHAIELISQGAL---------------SFLK 65 (312)
T ss_dssp HHHHHHHHTCHHHHHHHHH------------------HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHhhccChHHHHHHHH------------------HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHH
Confidence 3333366777777777643 344445556666666666543221 1233
Q ss_pred cCCHHHHHHH----HHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHH----HHCC--CCCCHHHHHHHHHHH
Q 014502 156 SGDVVTALSL----FEIMVSSEEYKPNSKTYDAFISGFSSLGNVD-AMNKWYAAN----IAAG--FSVNVQTYESLIHGS 224 (423)
Q Consensus 156 ~g~~~~A~~~----~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m----~~~~--~~~~~~~~~~li~~~ 224 (423)
.|+...|-++ ++-..+ .+++++......++..+.....-+ .=.++.+++ .+.| ..-+...+..+...|
T Consensus 66 ~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~ 144 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL 144 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 4444443332 333333 455556555555555554422110 011222222 2222 122667777788888
Q ss_pred HhcCCHHHHHHHH
Q 014502 225 LKARDFDSVDRFY 237 (423)
Q Consensus 225 ~~~g~~~~a~~~~ 237 (423)
.+.|++.+|..-|
T Consensus 145 ~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 145 LEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCHHHHHHHH
T ss_pred hhcCCHHHHHHHH
Confidence 8888888887755
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.48 E-value=25 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 265 LDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 265 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
...+.++|..|...|+-.. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444445555444443322 2233444444444455555555555444444444
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.30 E-value=38 Score=29.45 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 014502 324 FSGIIRLYALSDRLDDVEYSV 344 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~ 344 (423)
...+...|.+.+++.+|+.-|
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 667777788888888877766
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.05 E-value=16 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
..+.|+++++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666655555542 34555555566666666666666666666555
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=73.98 E-value=5.9 Score=36.00 Aligned_cols=44 Identities=5% Similarity=-0.120 Sum_probs=21.1
Q ss_pred HHhcCCchhHHHHHHHhhhccCCcChh---hHHHHHHHHhcCCHHHHHHH
Q 014502 46 RLLQVPVSQIKTTLDSVDIFAFNSSQF---SWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 46 ~l~~~~~~~~~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~a~~~ 92 (423)
.-++.|.. ++++.+.+.|..|+.. ..+.|..++..|+.+-+..+
T Consensus 20 ~Aa~~g~~---~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L 66 (437)
T 1n11_A 20 VASFMGHL---PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66 (437)
T ss_dssp HHHHHTCH---HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHCCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 33444544 3444444456655432 23345455666665544444
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.54 E-value=26 Score=26.13 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 014502 222 HGSLKARDFDSVDRFYEEMMS 242 (423)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~m~~ 242 (423)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444443
No 272
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.13 E-value=27 Score=25.68 Aligned_cols=66 Identities=6% Similarity=-0.207 Sum_probs=32.0
Q ss_pred cCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 282 INENMAQKLVKCYCELGRV---DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 282 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|+..+--.+.-++.+..+. .++..+++++.+.+ |......+-.|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444443444444444433 24555555555433 322222133445556666666666666666655
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.27 E-value=47 Score=29.22 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL-LHFFSGIIRLYALSDR--LDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 353 (423)
....++.-|...|+.++|.+.++++.. |... ..+...+..++-+.++ .+.+.+++..+...|+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~----p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC----CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 356678888888888888888888854 3211 1113444444444332 34567777777777664
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.08 E-value=6.1 Score=32.05 Aligned_cols=55 Identities=4% Similarity=-0.054 Sum_probs=24.8
Q ss_pred HHHHhhccccchHHHHHHHHhCCCcccHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRAT--YDFLVAGYRRAGLSGKLDSVINEMKFAE 421 (423)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~g 421 (423)
+...+..|..+.++.+.+. |..++... -..-+....+.|+.+-+..+++...+.|
T Consensus 181 L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 4444455555555444433 33333111 1123444456677776666666555544
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.95 E-value=14 Score=29.99 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQT--YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI--LEKVLEGLC 260 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 260 (423)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455566777777777776666665544321 1233444455566543 334444554443211 112333444
Q ss_pred hcCCHHHHHHHHHH
Q 014502 261 ARRKLDRVKSFLKF 274 (423)
Q Consensus 261 ~~g~~~~a~~~~~~ 274 (423)
..|+.+.+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56666555544444
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.37 E-value=5.4 Score=32.37 Aligned_cols=17 Identities=6% Similarity=0.133 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHH
Q 014502 76 ALITSLQSSSPKKAQLV 92 (423)
Q Consensus 76 ~li~~~~~~~~~~a~~~ 92 (423)
.|..++..|+.+....+
T Consensus 12 ~l~~A~~~g~~~~~~~L 28 (240)
T 3eu9_A 12 DIVKATQYGIYERCREL 28 (240)
T ss_dssp CHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCChHHHHHH
Confidence 34444555554443333
No 277
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=68.32 E-value=30 Score=29.84 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhccCCcChh----hHHHHHHHHhcCCHHHHHHH
Q 014502 41 NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQF----SWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 41 ~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~a~~~ 92 (423)
++.|..-++.+..+ +.+.+.+.|..++.. -++.|..++..|+.+-+..+
T Consensus 26 ~t~L~~Av~~g~~~---~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~L 78 (337)
T 4g8k_A 26 NHLLIKAVQNEDVD---LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 78 (337)
T ss_dssp HHHHHHHHHTTCHH---HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHcCCHH---HHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHH
Confidence 44555556777664 444445568877643 24566666778876544333
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.32 E-value=38 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 014502 290 LVKCYCELGRVDELEEQLETLTK 312 (423)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~~~~ 312 (423)
|.-++.+.|++++|.+..+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344555555555555555554
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.30 E-value=6.4 Score=30.98 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 014502 75 DALITSLQSSSPKKAQLV 92 (423)
Q Consensus 75 ~~li~~~~~~~~~~a~~~ 92 (423)
+.+..++..|+.+....+
T Consensus 7 ~~L~~A~~~g~~~~v~~l 24 (201)
T 3hra_A 7 GALLEAANQRDTKKVKEI 24 (201)
T ss_dssp THHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHhccHHHHHHH
Confidence 345555666666655555
No 280
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.34 E-value=23 Score=29.66 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502 152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208 (423)
Q Consensus 152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 208 (423)
...+.|++++|+.....-.+. -+-|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345667777777766665542 2445555566777777777777777777766654
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.14 E-value=13 Score=30.21 Aligned_cols=184 Identities=11% Similarity=0.041 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHH
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI--LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYC 295 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~ 295 (423)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566778999988888888777776555321 2234445556777654 445555665554321 122344456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH--hHHHHHHHHhhcccc
Q 014502 296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE--DVEMVICSYFRCAAY 373 (423)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~~l~~~~~~~~~~ 373 (423)
..|+.+-...+++.....+..++.....-...+...+..|+.+- ++.+.+.|..++..+ .-.+.+...+..|..
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 67887766665555433222333221102234444556666544 444445555443222 122344445566666
Q ss_pred chHHHHHHHHhCCCcccH---HHHHHHHHHHHhcCChhHHHHHHH
Q 014502 374 DRLDLFLDHIKGSYKLRR---ATYDFLVAGYRRAGLSGKLDSVIN 415 (423)
Q Consensus 374 ~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~ 415 (423)
+.++.+. +.|..++. .-. ..+...++.|+.+-+..+++
T Consensus 164 ~~v~~Ll---~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 164 SMVQLLL---QHGANVNAQMYSGS-SALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHH---HTTCCTTCBCTTSC-BHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHH---HcCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHh
Confidence 6555554 44555432 222 23333456677665544443
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.01 E-value=36 Score=27.94 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=39.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 014502 221 IHGSLKARDFDSVDRFYEEMMSL--GIIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294 (423)
Q Consensus 221 i~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 294 (423)
++.+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 34455555666666555544321 1111 111122223322333333334444444422 33444455556666
Q ss_pred HhcCCHHHHHHHHHHH
Q 014502 295 CELGRVDELEEQLETL 310 (423)
Q Consensus 295 ~~~g~~~~a~~~~~~~ 310 (423)
.+.|+.++|.++|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777666543
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=63.58 E-value=20 Score=30.95 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 014502 74 WDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~ 92 (423)
-+.|+.+++.|+.+-...+
T Consensus 26 ~t~L~~Av~~g~~~~V~~L 44 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQL 44 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHH
Confidence 3345555666665444333
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.09 E-value=55 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502 228 RDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283 (423)
Q Consensus 228 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 283 (423)
+...++.++|..|..+|+... ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 336677777777777766555 34566677777777888888888887777776664
No 285
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=62.60 E-value=5.3 Score=32.52 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=28.3
Q ss_pred HHHHhhccccchHHHHHHHHhCCCcccHH--HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502 364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRA--TYDFLVAGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
+...++.|..+.++.+ ++.|..++.. .-..-+......|+.+.+.++.+.+++.
T Consensus 181 L~~A~~~~~~~~v~~L---l~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 181 LHIAARENRYDCVVLF---LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHHTTCHHHHHHH---HTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHhHHHHH---HHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334445554444433 3444444321 1113334445677888888888887763
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.16 E-value=13 Score=31.52 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=86.9
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH---HH
Q 014502 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA---VF 146 (423)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~ 146 (423)
|..-++.|..++..|+.+-...+ ++.-......| -.+.+...+..|+.+-+..++ +.|..++.. -+
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~ 96 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTL----LNAGALKNLLE---NEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGN 96 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH----HHTTGGGSCCT---TCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCC---CCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCC
Confidence 33444455555666665544444 33211111122 123444455566655444333 344443321 12
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIH 222 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~ 222 (423)
+ .+...+..|+.+-+.-+++. |..++. .-+.+.+...+..|+.+ +.+.+.+.|..+... .-.+.+.
T Consensus 97 t-~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~ 166 (285)
T 3kea_A 97 T-ALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIH 166 (285)
T ss_dssp C-HHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHH
T ss_pred c-HHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHH
Confidence 2 23334455665544444433 222221 11123444445556654 333344444333111 2233444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502 223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 302 (423)
..+..|..+-+.-+++.-..-.. .|..-.+..+...+..|+. ++.+.+.+.|..++...... ...|+.+-
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~a-----~~~~~~~i 236 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLEN-----VLLDDAEI 236 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGGG-----GTTTCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChhh-----hhcCCHHH
Confidence 55566766655555544322111 1111111122233344553 34555566676665543211 33555555
Q ss_pred HHHHHHH
Q 014502 303 LEEQLET 309 (423)
Q Consensus 303 a~~~~~~ 309 (423)
+..+++.
T Consensus 237 v~~Ll~~ 243 (285)
T 3kea_A 237 AKMIIEK 243 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444443
No 287
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=59.57 E-value=35 Score=26.53 Aligned_cols=97 Identities=7% Similarity=-0.011 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHh--HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH---HHHH
Q 014502 74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLD--EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA---VFNS 148 (423)
Q Consensus 74 ~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ 148 (423)
|..+..+++.|+.+....+ ++. +..... .-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l----~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLEL----FEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTL 78 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHH----HHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCT
T ss_pred ccHHHHHHHcCCHHHHHHH----Hhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 3445666777777765555 222 222211 12344555556666665566667777777665532 1222
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHhcCCCCCCH
Q 014502 149 LICACLC-SGDVVTALSLFEIMVSSEEYKPNS 179 (423)
Q Consensus 149 li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~ 179 (423)
|..++.. ..+.....++.+.+.+ .|..++.
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~-~Gadin~ 109 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLE-KGADITA 109 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH-TTCCSSS
T ss_pred HHHHHHcCCcchhhHHHHHHHHHH-CCCCCCc
Confidence 3222221 2233334455555555 5555543
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.30 E-value=46 Score=25.06 Aligned_cols=22 Identities=5% Similarity=0.169 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 014502 184 AFISGFSSLGNVDAMNKWYAAN 205 (423)
Q Consensus 184 ~li~~~~~~~~~~~a~~~~~~m 205 (423)
.++.=|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 289
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.62 E-value=16 Score=29.46 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 014502 185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI---PILEKVLEGLCA 261 (423)
Q Consensus 185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 261 (423)
.+...++.|+++....+++.-...--.++...++. +...+..|+.+-+. .+.+.|..++. ..++. +...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVE----FLLQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHH----HHHHhCCCCCCcCCCCCCH-HHHHHH
Confidence 35566778898888777765332111223333333 44455667765444 44455544432 22223 333445
Q ss_pred cCCHHHHHHHHHHHHhCCCccCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChh
Q 014502 262 RRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD 338 (423)
Q Consensus 262 ~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 338 (423)
.|+.+ +++.+.+.|..++. .-.+ .+...+..|+.+-+.. +.+.|..++.....-...+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVM----LLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 66665 44455556655432 2223 3344456677664443 44455544432110122344455667665
Q ss_pred HHHHHHHHHHhCCCCCCChHhH-HHHHHHHhhccccchHHHHHHHHhCCCccc
Q 014502 339 DVEYSVGRMGKQGLSFKSAEDV-EMVICSYFRCAAYDRLDLFLDHIKGSYKLR 390 (423)
Q Consensus 339 ~a~~~~~~m~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 390 (423)
-+..+ .+.|..++..+.. .+.+...+..|..+.++.+ ++.|..++
T Consensus 154 ~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L---l~~ga~~~ 199 (231)
T 3aji_A 154 MVHIL----LFYKASTNIQDTEGNTPLHLACDEERVEEAKFL---VTQGASIY 199 (231)
T ss_dssp HHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH---HHTTCCSC
T ss_pred HHHHH----HhcCCCccccCCCCCCHHHHHHHCCCHHHHHHH---HHCCCCCC
Confidence 44443 3445433321111 2233444455665555444 34455543
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.51 E-value=50 Score=24.00 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=9.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 014502 148 SLICACLCSGDVVTALSLFEIM 169 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m 169 (423)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3344444444444444444444
No 291
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=58.32 E-value=75 Score=27.14 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=58.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH---HhHHHHHHH
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSA--VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISG 188 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~ 188 (423)
-+...++.|+.+....++.. .|..++.. .-.+.+...+..|+.+-+..+++ .|..++. .-.+ .+..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t-~L~~ 97 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-----HGADVHAKDKGGLV-PLHN 97 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTCCC-HHHH
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-----cCCCCCccCCCCCc-HHHH
Confidence 34445677888877777653 23332221 12334555566777665444443 3443432 2222 3344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502 189 FSSLGNVDAMNKWYAANIAAGFSVNVQ---TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 248 (423)
.+..|+.+ +++.+.+.|..++.. .++ .+...+..|+.+-+ +.+.+.|..|+
T Consensus 98 A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~ 151 (351)
T 3utm_A 98 ACSYGHYE----VTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEVC----SLLLSHGADPT 151 (351)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHHCCCHH----HHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCc
Confidence 45567655 444555566555432 223 34444566765544 34445565544
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.26 E-value=76 Score=25.97 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=43.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC-CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSE-EYKP----NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 224 (423)
++.+....++++|.+++++..+.. +.++ +.......+..-.....-.-+..+.+++.. .++...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 445556666666666666554310 1111 111222223333333333334444444422 33455556666777
Q ss_pred HhcCCHHHHHHHHHHH
Q 014502 225 LKARDFDSVDRFYEEM 240 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m 240 (423)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7788888887777444
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.93 E-value=36 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=12.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502 258 GLCARRKLDRVKSFLKFLLGGGWKIN 283 (423)
Q Consensus 258 ~~~~~g~~~~a~~~~~~~~~~g~~~~ 283 (423)
..+..|+.+.-.++.+.+++.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444554444455555555555443
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.82 E-value=58 Score=24.53 Aligned_cols=52 Identities=10% Similarity=-0.007 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 353 (423)
+++.++|..|..+++-...... |......+...|++.+|.++|+.-++.+-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~Alf-Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPL-YIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3366677777766664444332 666666677777777777777776665544
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.49 E-value=53 Score=29.54 Aligned_cols=173 Identities=11% Similarity=0.067 Sum_probs=78.2
Q ss_pred HHHHHhcCCchhHHHHHHHhhhccCCcCh---hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh
Q 014502 43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQ---FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG 119 (423)
Q Consensus 43 ll~~l~~~~~~~~~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~ 119 (423)
.|+.-++.+..++ ++.+.+.|..++. ..++.|..++..|+.+-...+ ++.-...+..|..-.+ .+...+
T Consensus 50 ~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~g~t-~L~~A~ 121 (437)
T 1n11_A 50 PLHMAARAGHTEV---AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL----LENNANPNLATTAGHT-PLHIAA 121 (437)
T ss_dssp HHHHHHHHTCHHH---HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHH----HHHTCCTTCCCTTCCC-HHHHHH
T ss_pred HHHHHHHcCCHHH---HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH----HhCCCCCCCCCCCCCc-HHHHHH
Confidence 4444455666644 3344444555432 334556666777776544433 4432222223333233 334445
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH--hHHHHHHHHHhcCC
Q 014502 120 KVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK--TYDAFISGFSSLGN 194 (423)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~ 194 (423)
+.|+.+.+..+++ .|..++ ..-+ +.+...+..|+.+-+..+++ .|..++.. .-.+.+...+..|+
T Consensus 122 ~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~ 191 (437)
T 1n11_A 122 REGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVAELLLE-----RDAHPNAAGKNGLTPLHVAVHHNN 191 (437)
T ss_dssp HHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCSSCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCC
Confidence 6677666555554 332221 1111 23444556677655444433 33333321 11123344455666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVNVQTY--ESLIHGSLKARDFDSVDRFY 237 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~ 237 (423)
.+ +++.+.+.|..++...+ .+.+...+..|+.+-+..++
T Consensus 192 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 192 LD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 54 34444455544432211 12344455667765544443
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.47 E-value=66 Score=25.02 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=8.3
Q ss_pred CCHHhHHHHHHHHHhcCC
Q 014502 177 PNSKTYDAFISGFSSLGN 194 (423)
Q Consensus 177 p~~~~~~~li~~~~~~~~ 194 (423)
++..+-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 444444444444444444
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.37 E-value=38 Score=26.28 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=27.2
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHH
Q 014502 70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT 132 (423)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (423)
|...++.|..++..|+.+-...+ ++.-......|..-.+. +...+..|+.+-+..+++
T Consensus 36 ~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 36 DTEGNTPLNIAVHNNDIEIAKAL----IDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLK 93 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 33445566666777775544444 44321112233322333 333445566655555543
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.34 E-value=1.4e+02 Score=28.67 Aligned_cols=247 Identities=7% Similarity=-0.022 Sum_probs=125.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502 81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV 160 (423)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 160 (423)
.+.+++...+.. + ...+.+...-.....+....|+-.+|......+-..|- ..+..++.++..+.+.|...
T Consensus 83 ~~~~~w~~~l~~----~----~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 83 ARREDWRGLLAF----S----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHTTCHHHHHHH----C----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred HhCCCHHHHHHh----c----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC
Confidence 356666655553 2 22234566666677788888998888887777766653 35678889999998877654
Q ss_pred H--HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCCHHH---HHHHHHHHHh
Q 014502 161 T--ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG---------FSVNVQT---YESLIHGSLK 226 (423)
Q Consensus 161 ~--A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~---~~~li~~~~~ 226 (423)
. ...=++.+.. .| +...-..++... ..+.-..+. .+..+.... ..++... +...+.-+.+
T Consensus 154 ~~~~~~R~~~al~-~~---~~~~a~~l~~~l-~~~~~~~a~-~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 154 PLAYLERIRLAMK-AG---NTGLVTVLAGQM-PADYQTIAS-AIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHHH-TT---CHHHHHHHHHTC-CGGGHHHHH-HHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CC---CHHHHHHHHHhC-CHHHHHHHH-HHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh
Confidence 4 3333333333 11 222222222211 001100111 111111110 1122221 1122333333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKV----LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 302 (423)
.+.+.|...+....... ..+......+ .......+...++...+....... .+.....-.+..-.+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776533 2233332222 222333443445555555544432 333333344444556788888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 303 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 349 (423)
|...|+.|......-..... | +..++...|+.++|..+|..+..
T Consensus 304 a~~~~~~l~~~~~~~~r~~Y-W--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRY-W--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHH-H--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHH-H--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887653222122221 3 23456677888888888877654
No 299
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=56.81 E-value=58 Score=25.93 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=11.6
Q ss_pred hHHHHHHHHhcCCHHHHHHH
Q 014502 73 SWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~ 92 (423)
-++.|..++..|+.+-+..+
T Consensus 37 g~t~L~~A~~~g~~~~v~~L 56 (232)
T 2rfa_A 37 GETALHIAALYDNLEAAMVL 56 (232)
T ss_dssp SCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHH
Confidence 34555556777766555444
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.91 E-value=36 Score=26.06 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 014502 233 VDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282 (423)
Q Consensus 233 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~ 282 (423)
..++|..|..+|+... ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3334444444443333 2223333344444444444444444444444333
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=55.49 E-value=32 Score=23.54 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHH
Q 014502 336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379 (423)
Q Consensus 336 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 379 (423)
+.++|.++++.+...| +.+|..++.++...|+...++.+
T Consensus 52 ~~~~ar~Lld~L~~rG-----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG-----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSC-----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 4455555555555544 44555555555544444433333
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.45 E-value=73 Score=24.96 Aligned_cols=28 Identities=0% Similarity=-0.318 Sum_probs=13.4
Q ss_pred hHhHHHHHHHHhhccccchHHHHHHHHh
Q 014502 357 AEDVEMVICSYFRCAAYDRLDLFLDHIK 384 (423)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 384 (423)
+..-...+.++.+.+..++...+.+.+.
T Consensus 157 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 184 (211)
T 3ltm_A 157 GWVRQSAADALGEIGGERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHh
Confidence 4444444555555554444444444443
No 303
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=54.96 E-value=7.2 Score=29.16 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=6.0
Q ss_pred HhcCChhHHHHHH
Q 014502 402 RRAGLSGKLDSVI 414 (423)
Q Consensus 402 ~~~g~~~~a~~~~ 414 (423)
.+.|+.+-+.-++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3455554444433
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.86 E-value=1e+02 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.004 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352 (423)
Q Consensus 300 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 352 (423)
..+..++-..+...+..|....-+....|....+.+++..|-.+-+++.+.+.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34445555555566666666555567777888888999999888888888553
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.62 E-value=61 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 218 ESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 218 ~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555556666655555553
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.91 E-value=5.3 Score=33.17 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=9.9
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 014502 331 YALSDRLDDVEYSVGRMGK 349 (423)
Q Consensus 331 ~~~~g~~~~a~~~~~~m~~ 349 (423)
.+..|+.+-+..++++-..
T Consensus 232 A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCC
Confidence 3445555555555555443
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.75 E-value=56 Score=24.61 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCccC
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK--LDRVKSFLKFLLGGGWKIN 283 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~g~~~~ 283 (423)
.+.++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567777888888888888888874211 0112233444444444322 3456677777766655433
No 308
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.65 E-value=85 Score=23.98 Aligned_cols=53 Identities=8% Similarity=-0.011 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
+++..+|..|..+++-...... |......+...|++.+|.++|..-++.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~Alf-Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQF-YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3356677777777665544433 6677777777777777777777777665443
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.96 E-value=1.3e+02 Score=25.82 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 014502 287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL-HFFSGIIRLYALSDR--LDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 353 (423)
...++.-|...|+.++|.+.++++.. |.... .+...+..++-+.++ .+.+..++..+.+.|+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~----p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC----CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 45677777778888888888887753 32211 113333444443322 34556777777766654
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.53 E-value=1e+02 Score=24.47 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=10.9
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 014502 227 ARDFDSVDRFYEEMMSLG 244 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~ 244 (423)
..+.+.|+-.+-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 356666666666666665
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.87 E-value=17 Score=31.35 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH-HHHHHHHhhcccc--c-hHHHHHHHHhCCCcc
Q 014502 324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMVICSYFRCAAY--D-RLDLFLDHIKGSYKL 389 (423)
Q Consensus 324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~l~~~~~~~~~~--~-~~~~~~~~~~~~~~p 389 (423)
...++.-|...|+.++|.+.++++...... +... ..+..++-+.++. + ...++..+...|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~---~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH---HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH---HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch---HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 567899999999999999999998642221 2222 3444555554332 3 256666666555433
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.31 E-value=40 Score=27.30 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 353 (423)
+++..+|..|..+++-...... |......+...|++.+|.++|+.-++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~Alf-Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIF-YEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3455566666665554433332 555566666666666666666665554433
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=45.94 E-value=61 Score=22.11 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 014502 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA 162 (423)
Q Consensus 123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 162 (423)
..++|.++++.++.+| +..|..++.++...|+.+-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4555555555555543 23455555555444444433
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.64 E-value=14 Score=32.41 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=7.8
Q ss_pred HhcCChhHHHHHHHH
Q 014502 402 RRAGLSGKLDSVINE 416 (423)
Q Consensus 402 ~~~g~~~~a~~~~~~ 416 (423)
++.|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 345665555555543
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.39 E-value=42 Score=29.27 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=12.6
Q ss_pred cChhhHHHHHHHHhcCCHHHHHHH
Q 014502 69 SSQFSWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 69 p~~~~~~~li~~~~~~~~~~a~~~ 92 (423)
.|..-++.|..++..|+.+-...+
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~L 39 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRL 39 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHH
Confidence 344455555555666665444444
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.26 E-value=1.1e+02 Score=23.93 Aligned_cols=80 Identities=10% Similarity=-0.141 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502 212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV 291 (423)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 291 (423)
++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++...|+.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444445555554432 2222222222 244444444444555444432 2222222322 23444444444
Q ss_pred HHHHhcCC
Q 014502 292 KCYCELGR 299 (423)
Q Consensus 292 ~~~~~~g~ 299 (423)
.++.+.+.
T Consensus 165 ~aL~~~~~ 172 (211)
T 3ltm_A 165 DALGEIGG 172 (211)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 45555444
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.05 E-value=43 Score=25.54 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=26.7
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 014502 207 AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 264 (423)
+.|+.++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334443332 233444444444455555555555544 444444554444455555543
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.97 E-value=1.3e+02 Score=24.94 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=91.9
Q ss_pred CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH---HhH
Q 014502 106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS---KTY 182 (423)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~ 182 (423)
.|..-.+. +...+..|+.+.+..++ +.|..++...-.+.+...+..|+.+-+..+++ .|..++. .-+
T Consensus 27 ~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~~d~~g~ 96 (285)
T 3kea_A 27 ADVHGHSA-SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLF-----SGLDDSQFDDKGN 96 (285)
T ss_dssp CCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-----TTCCTTCCCTTSC
T ss_pred cCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-----CCCCCCCcCCCCC
Confidence 34333333 34445577766555544 44544433222334555566777665544443 3444432 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 014502 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ---TYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEG 258 (423)
Q Consensus 183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~ 258 (423)
+ .+...+..|+.+-+..++ +.|..++.. .+.+.+...+..|+.+-+. .+.+.|..+ +...-.+.+..
T Consensus 97 t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~ 167 (285)
T 3kea_A 97 T-ALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHI 167 (285)
T ss_dssp C-HHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHH
T ss_pred c-HHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHH
Confidence 3 334445667765444443 345444332 2234555566677765443 344444333 21122334445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502 259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 321 (423)
.+..|..+-+.-+++.-..-... |..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 168 A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 168 TIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 56778887776666654332211 111112222333445664 45555667777776653
No 319
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=44.06 E-value=30 Score=29.10 Aligned_cols=22 Identities=0% Similarity=-0.417 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFT 132 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~ 132 (423)
..+.+...+..|+.++..++..
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp ----------------------
T ss_pred HHHHHHHHhhcCCCCCcccCCC
Confidence 3444555555555555444433
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.75 E-value=74 Score=24.17 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g 157 (423)
..++..+...++.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444444444444444443 33334444333344444444
No 321
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=42.56 E-value=1.3e+02 Score=24.18 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
.+..+++.+.+.|+-.|...-..++....+.+.+ ...++-.++..+|+.+
T Consensus 94 ~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 4455555666666554444444445444432221 2334555555666543
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.05 E-value=83 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502 156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (423)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 194 (423)
.+..-.|.++++.+.+ .+...+..|.-.-++.+.+.|-
T Consensus 34 ~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 34 SMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 3344445555555544 2323333333334444444443
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.91 E-value=88 Score=23.33 Aligned_cols=45 Identities=2% Similarity=-0.074 Sum_probs=18.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333333334444444444444433334444333344444333
No 324
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=41.68 E-value=1.9e+02 Score=25.78 Aligned_cols=297 Identities=9% Similarity=0.022 Sum_probs=165.6
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCCCHHhH
Q 014502 108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKP---DSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNSKTY 182 (423)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~ 182 (423)
..+...|...|.+.|+.++..+++...... +.-| .......+++.+... +..+.-.++..+..+.. .-+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHH
Confidence 456788999999999999999998876532 1111 233566788877764 44455555555554311 1122333
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCH
Q 014502 183 ------DAFISGFSSLGNVDAMNKWYAANIAA--GFS---VNVQTYESLIHGSLKARDFDSVDRFYEEMMS--LGIIPSI 249 (423)
Q Consensus 183 ------~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~ 249 (423)
.-+...|...|++.+|.+++.++.+. ... --...|-.-+..|...+++.++...+..... ..+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 25789999999999999999988874 211 1134566667889999999999999988754 2333444
Q ss_pred HHHHHH--H--HHHH-hcCCHHHHHHHHHHHHhC----CCccC---HHhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCC
Q 014502 250 PILEKV--L--EGLC-ARRKLDRVKSFLKFLLGG----GWKIN---ENMAQKLVKCYCELGRVDELEEQLE-TLTKCNQS 316 (423)
Q Consensus 250 ~~~~~l--i--~~~~-~~g~~~~a~~~~~~~~~~----g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~ 316 (423)
.....+ . ..+. ..+++..|...|-+..+. |. |. ...|..+ .+.. .++..+...++. +....-..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~ 253 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSG 253 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCS
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc-HHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCC
Confidence 443322 2 2345 689999998888776432 21 11 1133222 2222 233333333332 22222233
Q ss_pred CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHH
Q 014502 317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDF 396 (423)
Q Consensus 317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 396 (423)
|.... +..++.+ ...+++.+...+++.... .+. .|+.....+ ..+.+.=. ...+.+... +-...++..
T Consensus 254 pei~~--l~~L~~a-~~~~dl~~f~~iL~~~~~-~l~-~D~~l~~h~-~~L~~~Ir---~~~L~~i~~---pYsrIsl~~ 321 (394)
T 3txn_A 254 RDIDA--MKSVAEA-SHKRSLADFQAALKEYKK-ELA-EDVIVQAHL-GTLYDTML---EQNLCRIIE---PYSRVQVAH 321 (394)
T ss_dssp HHHHH--HHHHHHH-HHTTCHHHHHHHHHHSTT-TTT-TSHHHHHHH-HHHHHHHH---HHHHHHHHT---TCSEEEHHH
T ss_pred ccHHH--HHHHHHH-HHhCCHHHHHHHHHHHHH-HHh-cChHHHHHH-HHHHHHHH---HHHHHHHhH---hhceeeHHH
Confidence 44333 5555555 455677776666665432 222 223221111 11100000 011111111 123455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502 397 LVAGYRRAGLSGKLDSVINEMKFAEYM 423 (423)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 423 (423)
+...+.- ..+++...+.+|+..|.+
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 6666543 678999999999888753
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.65 E-value=2e+02 Score=26.09 Aligned_cols=29 Identities=10% Similarity=-0.102 Sum_probs=15.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
.+......+... ..|+..++..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344445544444 34666666666665543
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.29 E-value=78 Score=23.08 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC
Q 014502 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (423)
Q Consensus 158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 193 (423)
..-.|.++++.+.+ .+...+..|.-.-++.+.+.|
T Consensus 33 ~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALME-AGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444444 232333333333333444443
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.28 E-value=1.8e+02 Score=29.69 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 014502 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP----ILEKVLEGLCARR 263 (423)
Q Consensus 216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g 263 (423)
-|..++..+-+.+-++.+.++-+...+.--.-|.. .|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57788888889999999988887776542222332 4667777766554
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.23 E-value=38 Score=27.20 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 014502 295 CELGRVDELEEQLETLT 311 (423)
Q Consensus 295 ~~~g~~~~a~~~~~~~~ 311 (423)
...|+.+.+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555544
No 329
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.78 E-value=1.1e+02 Score=23.30 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHh
Q 014502 286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL--DDVEYSVGRMGK 349 (423)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~ 349 (423)
....++.-|...|+.++|...++++.. |.....+-..+|..-...++. +.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~----p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL----GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888754 332222233444433333332 234455666543
No 330
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.56 E-value=1.1e+02 Score=26.72 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHH
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSM 134 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m 134 (423)
..++.=|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 33444444444554444444444
No 331
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.05 E-value=1.3e+02 Score=23.26 Aligned_cols=139 Identities=7% Similarity=-0.116 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 014502 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSG 326 (423)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 326 (423)
++...-...+.++...++.+... .+..+.. .++..+-...+.++.+.++.+....+.+ +.. .++... -..
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~v--r~~ 126 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFV--RIA 126 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHH--HHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHH--HHH
Confidence 34444444555555555543332 2223332 2455555566666666666443333333 322 233333 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHh
Q 014502 327 IIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRR 403 (423)
Q Consensus 327 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 403 (423)
.+.++...+..+ +...+..+... +++..-...+.++...|..++...+.+.+. .++...-...+.++.+
T Consensus 127 a~~aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 127 AAFALGEIGDER-AVEPLIKALKD----EDGWVRQSAADALGEIGGERVRAAMEKLAE---TGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCSHHHHHHHHHHHH---HCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHcC----CCHHHHHHHHHHHHHhCchhHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 555556665533 33444444332 135555666666666666666666666654 2344444444444443
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.86 E-value=1.1e+02 Score=22.68 Aligned_cols=39 Identities=0% Similarity=-0.163 Sum_probs=16.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
..+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 38 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 333344445555555444333343333333444444444
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.82 E-value=22 Score=28.53 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=91.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
Q 014502 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV---QTYESLIHGS 224 (423)
Q Consensus 148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~ 224 (423)
..+...+..|+.+....+++.-.. .-..++..-.+. +...+..|+.+ +++.+.+.|..++. ..++. +...
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A 80 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKS-LATRTDQDSRTA-LHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIA 80 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCH-HHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHH
Confidence 346667788999988888876433 111233333333 44455667765 44445555655443 22333 3444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCH
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIPSIPI--LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRV 300 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 300 (423)
+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+.+. .+.+.|..++... -.+.+...+..|+.
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 5567665 3444555665543221 123344455667766444 4445565544221 11233444566776
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502 301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF 354 (423)
Q Consensus 301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 354 (423)
+-+.. +.+.|..++.....-...+...+..|+.+- .+.+.+.|..+
T Consensus 153 ~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~ 198 (231)
T 3aji_A 153 KMVHI----LLFYKASTNIQDTEGNTPLHLACDEERVEE----AKFLVTQGASI 198 (231)
T ss_dssp HHHHH----HHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCS
T ss_pred HHHHH----HHhcCCCccccCCCCCCHHHHHHHCCCHHH----HHHHHHCCCCC
Confidence 64444 444555444221001223444556676544 34444556544
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.73 E-value=1.4e+02 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 014502 227 ARDFDSVDRFYEEMMSLGIIPS 248 (423)
Q Consensus 227 ~g~~~~a~~~~~~m~~~~~~p~ 248 (423)
..+.+.|+-.+-+|.+.|-.|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3566666666666666664443
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.68 E-value=88 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502 114 LIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157 (423)
Q Consensus 114 l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 157 (423)
++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333 34445555555544444444444444444444444
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.41 E-value=1.2e+02 Score=22.41 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=17.3
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502 310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350 (423)
Q Consensus 310 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 350 (423)
+.+.|..++..- ..++..+...+..-.|.++++.+.+.
T Consensus 13 l~~~g~r~T~qR---~~Il~~L~~~~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 13 LKETGVRITPQR---HAILEYLVNSMAHPTADDIYKALEGK 50 (145)
T ss_dssp HHHTTCCCCHHH---HHHHHHHHHCSSCCCHHHHHHHHGGG
T ss_pred HHHcCCCCCHHH---HHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 344444444332 33444444444444555555555544
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.78 E-value=1.5e+02 Score=23.98 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 014502 231 DSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI 282 (423)
Q Consensus 231 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~ 282 (423)
+++.++|..|..+|+... ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666666655444 3345555555566666666666666666555555
No 338
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=37.73 E-value=43 Score=27.94 Aligned_cols=25 Identities=4% Similarity=0.109 Sum_probs=16.5
Q ss_pred CcChhhHHHHHHHHhcCCHHHHHHH
Q 014502 68 NSSQFSWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~ 92 (423)
+.|....+.|+.++..|+.+-...+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~L 30 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYL 30 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCccchhHHHHHHHcCCHHHHHHH
Confidence 3455556778888888887655544
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.62 E-value=1.1e+02 Score=22.52 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhCC
Q 014502 301 DELEEQLETLTKCN 314 (423)
Q Consensus 301 ~~a~~~~~~~~~~~ 314 (423)
-.|.++++.+.+.+
T Consensus 34 ~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 34 ATPDDILGEVRKTA 47 (145)
T ss_dssp BCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhhC
Confidence 34444444444443
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.26 E-value=1e+02 Score=24.37 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 014502 295 CELGRVDELEEQLETLTKCN 314 (423)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~ 314 (423)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444443
No 341
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.79 E-value=1.6e+02 Score=22.83 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=12.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 014502 399 AGYRRAGLSGKLDSVINEMKFA 420 (423)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~m~~~ 420 (423)
..|...|..++...+|...+.+
T Consensus 216 ~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 216 RRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHhc
Confidence 3445566666666666655543
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.68 E-value=1.4e+02 Score=22.19 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhCC
Q 014502 301 DELEEQLETLTKCN 314 (423)
Q Consensus 301 ~~a~~~~~~~~~~~ 314 (423)
-.|.++++.+.+.+
T Consensus 34 ~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 34 ISAEELYKKLIDLG 47 (150)
T ss_dssp EEHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC
Confidence 34444444444443
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.63 E-value=2.9e+02 Score=25.75 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCcChhhHHHHHHH---HhcCCHHHHHHHHHHHH--HHHhhCCC-----CCHhHHHHHHHHHhcCCChhH----------
Q 014502 67 FNSSQFSWDALITS---LQSSSPKKAQLVLEWRL--DKMLKGNE-----SCLDEYACLIALSGKVQNVPF---------- 126 (423)
Q Consensus 67 ~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~--~~m~~~~~-----~~~~~~~~l~~~~~~~~~~~~---------- 126 (423)
+-|.+..|-.++.. +..+++++|.++-.... +.+...+. -....|-..-..+-..|+...
T Consensus 130 ~~pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ 209 (523)
T 4b4t_S 130 VTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNII 209 (523)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhh
Q ss_pred -HHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH-------HHHHhcCC
Q 014502 127 -AMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI-------SGFSSLGN 194 (423)
Q Consensus 127 -a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-------~~~~~~~~ 194 (423)
=-.++...+..-+..| ...+|.+++.|...+.++.|..+..+..- +.+...-+..+ ..+.-.++
T Consensus 210 ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f----P~~~~sn~q~~rY~YY~GRI~a~q~~ 285 (523)
T 4b4t_S 210 LRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY----PHTDVSSSLEARYFFYLSKINAIQLD 285 (523)
T ss_dssp HHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS----CTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC----CcccCCHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 195 VDAMNKWYAANIAAGFSVN------VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268 (423)
Q Consensus 195 ~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 268 (423)
+.+|.+.+......-.... ...+..+|-.-.-.|+.-. ...+...+.......|..+..++ +.|+.+..
T Consensus 286 Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F 360 (523)
T 4b4t_S 286 YSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKF 360 (523)
T ss_dssp HHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHH
Q ss_pred HHHHHH
Q 014502 269 KSFLKF 274 (423)
Q Consensus 269 ~~~~~~ 274 (423)
...++.
T Consensus 361 ~~~L~~ 366 (523)
T 4b4t_S 361 TSTITK 366 (523)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.21 E-value=1.2e+02 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502 264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV 300 (423)
Q Consensus 264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 300 (423)
..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3444555555555544444444433344455544443
No 345
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.09 E-value=23 Score=29.16 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 014502 399 AGYRRAGLSGKLDSVINEM 417 (423)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~m 417 (423)
...++.|+.+-+..+++.-
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhC
Confidence 3345667777776666653
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.75 E-value=65 Score=23.69 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502 112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (423)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (423)
..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555555555566666776666665555666555555555555543
No 347
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.45 E-value=2e+02 Score=23.60 Aligned_cols=22 Identities=9% Similarity=-0.072 Sum_probs=10.3
Q ss_pred HHHHHhhccccchHHHHHHHHh
Q 014502 363 VICSYFRCAAYDRLDLFLDHIK 384 (423)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~~~ 384 (423)
.+.++.+.|..+....+.+.+.
T Consensus 241 a~~aL~~i~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 241 IIEAAGELGDKTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHT
T ss_pred HHHHHHhcCchhhhHHHHHHHh
Confidence 3444444454444444444443
No 348
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.61 E-value=1.2e+02 Score=20.76 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502 198 MNKWYAANIAAGFSVNVQTYESLIHGSLKAR 228 (423)
Q Consensus 198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 228 (423)
|.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444555555555555554444443
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.47 E-value=93 Score=23.03 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN 194 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 194 (423)
.-.|.++++.+.+ .+...+..|.-.-+..+.+.|-
T Consensus 33 h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRK-TASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCCc
Confidence 3345555555544 3333343333333444444443
No 350
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.96 E-value=1.1e+02 Score=20.37 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV 159 (423)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 159 (423)
....++|..+++.+..+ ....|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHH
Confidence 34555566666655544 345555555555555543
No 351
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.51 E-value=1.8e+02 Score=22.45 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502 267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP 317 (423)
Q Consensus 267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 317 (423)
.+..+++.+.+.|+-.|...-..++....+.|.+. ...+-.++..+|+.+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 34455555555555544444444555444433322 234445555555543
No 352
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.43 E-value=3.6e+02 Score=26.00 Aligned_cols=28 Identities=7% Similarity=-0.121 Sum_probs=20.0
Q ss_pred cHHHHHHHHHH-----HHhcCChhHHHHHHHHH
Q 014502 390 RRATYDFLVAG-----YRRAGLSGKLDSVINEM 417 (423)
Q Consensus 390 ~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 417 (423)
+..|+..|+.. +...|+++.|++.++++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 45566655433 37899999999888775
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.33 E-value=76 Score=22.97 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD 158 (423)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 158 (423)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 333444444455566666666555544455555555555555543
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.32 E-value=4.1e+02 Score=27.02 Aligned_cols=110 Identities=5% Similarity=-0.094 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc------------------
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK------------------ 281 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~------------------ 281 (423)
++..|...|.++-|.++...+ +.+...--.+..+|...|++++|..+|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 455566666666554433222 22322222344556667777777777765421 110
Q ss_pred -----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHHhcC
Q 014502 282 -----INENMAQKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGIIRLYALSD 335 (423)
Q Consensus 282 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~~~~~g 335 (423)
....-|..++..+-+.+.++-+.++-+..+..- -.++..+.+|+.+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112367889999999999999988888877632 233444556888888887765
No 355
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.28 E-value=2.8e+02 Score=24.61 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLG----------------IIPSIPILEKVLEGLCARRKLDRVKSFLKFLL 276 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~----------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 276 (423)
++.......+.+++.++++++...- ..+-......+...|...|+.+.|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667778888888887763221 11223444556666777888888888887775
No 356
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.10 E-value=1.1e+02 Score=19.73 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 193 (423)
.-.+.++++.+.+ .+...+..|....+..+.+.|
T Consensus 33 ~~s~~el~~~l~~-~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLID-MGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCC
Confidence 3344455555544 333334444444444444443
No 357
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.10 E-value=2e+02 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 014502 219 SLIHGSL---KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-----LDRVKSFLKFLLGGGW 280 (423)
Q Consensus 219 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~g~ 280 (423)
-+|+++. +..+++.|+-.+-+|.+.|-.|....=..++-+.-..|. ...|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444443 336666666666666666654433333333333333322 2234444444444454
No 358
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.79 E-value=1.7e+02 Score=21.97 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 014502 127 AMHVFTSMEAQGIKP-DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177 (423)
Q Consensus 127 a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 177 (423)
+.++|..|...|+-. -+..|......+-..|++.+|.++|+.-.+ .+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 555555555555432 233455555555555666666666655555 34444
No 359
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.46 E-value=38 Score=20.71 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHh
Q 014502 158 DVVTALSLFEIMVS 171 (423)
Q Consensus 158 ~~~~A~~~~~~m~~ 171 (423)
+++.|...|.++..
T Consensus 35 d~~~A~~~F~~l~~ 48 (59)
T 1oai_A 35 DYTRSAQAFTHLKA 48 (59)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44445555544443
No 360
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.43 E-value=38 Score=28.08 Aligned_cols=20 Identities=5% Similarity=0.157 Sum_probs=8.7
Q ss_pred hHHHHHHHHhcCCHHHHHHH
Q 014502 73 SWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 73 ~~~~li~~~~~~~~~~a~~~ 92 (423)
-.+.|..++..|+.+....+
T Consensus 13 g~t~L~~A~~~g~~~~v~~L 32 (273)
T 2pnn_A 13 DRRSIFDAVAQSNCQELESL 32 (273)
T ss_dssp CHHHHHHHHHTTCSSTTTTH
T ss_pred cchHHHHHHHcCCHHHHHHH
Confidence 33444444444444444333
No 361
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.48 E-value=2.1e+02 Score=22.64 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCchHH
Q 014502 254 KVLEGLC---ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-----DELEEQLETLTKCNQSPEVLL 321 (423)
Q Consensus 254 ~li~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~p~~~~ 321 (423)
-+|+++. +-.+.+.|+-++.+|++.| .|....-..++.+.-..|.- ..|...++.....|. |....
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i 89 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL-PEARI 89 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT-TTTHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC-CHHHH
Confidence 3455553 4589999999999999999 66655555566666556653 234455555555554 44443
No 362
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.36 E-value=1.9e+02 Score=21.99 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--CHHhHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 014502 156 SGDVVTALSLFEIMVSSEEYKP--NSKTYDAFIS------GFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~ 207 (423)
.|++-+|.+++++.-. ..-.+ +...|..||+ ...+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~-~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWY-NYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTT-TTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3777777777777655 22233 3344555555 12345666666666665543
No 363
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=28.30 E-value=1.8e+02 Score=21.49 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=11.6
Q ss_pred CcChhhHHHHHHHHhcCCHHHHHHH
Q 014502 68 NSSQFSWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 68 ~p~~~~~~~li~~~~~~~~~~a~~~ 92 (423)
.|.....+.+..++..|+.+-...+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~L 33 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRIL 33 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHH
Confidence 4444445555555666665554444
No 364
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=27.86 E-value=84 Score=25.72 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=59.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 014502 150 ICACLCSGDVVTALSLFEIMVSSEEYKPNS---KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV---QTYESLIHG 223 (423)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~ 223 (423)
+...+..|+.+.+..+++ .|..++. .-.+ .+...+..|+.+- .+.+.+.|..++. ...+ .+..
T Consensus 7 L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~ 75 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLIS-----QGWAVNIITADHVS-PLHEACLGGHLSC----VKILLKHGAQVNGVTADWHT-PLFN 75 (261)
T ss_dssp HHHHHHHTCHHHHHHHHH-----TTCCSSCCCTTCCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHcCCHHHHHHHHH-----CCCCCCCcCCCCCC-HHHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCC-HHHH
Confidence 444556677655544443 3433432 2223 3334445566553 3344445544432 2222 3333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCH
Q 014502 224 SLKARDFDSVDRFYEEMMSLGIIPSIPI-LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRV 300 (423)
Q Consensus 224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 300 (423)
.+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... ..+.+...+..|+.
T Consensus 76 A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 147 (261)
T 2xai_A 76 ACVSGSWDCVN----LLLQHGASVQPESDLASPIHEAARRGHVEC----VNSLIAYGGNIDHKISHLGTPLYLACENQQR 147 (261)
T ss_dssp HHHHTCHHHHH----HHHHTTCCSSCSCTTCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred HHHcCCHHHHH----HHHHCCCCCCCCCCCCCHHHHHHHcCcHHH----HHHHHHcCCCCCcCCCCCCCHHHHHHHhCCH
Confidence 44556655433 3344444332110 1123334445566553 334444454433211 11223334455666
Q ss_pred HHHHHHHH
Q 014502 301 DELEEQLE 308 (423)
Q Consensus 301 ~~a~~~~~ 308 (423)
+-+..+++
T Consensus 148 ~~v~~Ll~ 155 (261)
T 2xai_A 148 ACVKKLLE 155 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 365
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.50 E-value=2.4e+02 Score=22.65 Aligned_cols=34 Identities=0% Similarity=0.010 Sum_probs=16.3
Q ss_pred HHHHHHHHhc--CCChhHHHHHHHHHHHCCCCCCHH
Q 014502 111 YACLIALSGK--VQNVPFAMHVFTSMEAQGIKPDSA 144 (423)
Q Consensus 111 ~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~ 144 (423)
+..+..++.. .+++.+-..+++.+...++.-...
T Consensus 20 f~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~ 55 (235)
T 3bu8_A 20 FHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHT 55 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhCccccccc
Confidence 4444444442 234455555555555555544433
No 366
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.27 E-value=3e+02 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502 217 YESLIHGSLKARDFDSVDRFYEEMM 241 (423)
Q Consensus 217 ~~~li~~~~~~g~~~~a~~~~~~m~ 241 (423)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3456666666677777766666553
No 367
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.95 E-value=3.2e+02 Score=23.93 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCch
Q 014502 251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR--VDELEEQLETLTKCNQSPEV 319 (423)
Q Consensus 251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 319 (423)
....++.=|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+.+.++.+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 4678888899999999999999998754332 23445555556555433 35577888888877765533
No 368
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=26.62 E-value=91 Score=26.64 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502 236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW 280 (423)
Q Consensus 236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 280 (423)
+++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 444555567777777777777777766667777777777777663
No 369
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.48 E-value=1.1e+02 Score=22.13 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502 265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299 (423)
Q Consensus 265 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 299 (423)
.-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33444444444443333333333333344444433
No 370
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.38 E-value=1.1e+02 Score=19.13 Aligned_cols=44 Identities=5% Similarity=0.004 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502 182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226 (423)
Q Consensus 182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 226 (423)
++.++..+++..-++.++..+++..+.| ..+..+|-.-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555555666666655555 2355555544444443
No 371
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.30 E-value=1.3e+02 Score=23.69 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=8.0
Q ss_pred HHccCCHHHHHHHHHH
Q 014502 153 CLCSGDVVTALSLFEI 168 (423)
Q Consensus 153 ~~~~g~~~~A~~~~~~ 168 (423)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 9 ACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 3445555555555443
No 372
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.25 E-value=1.1e+02 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 014502 259 LCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 259 ~~~~g~~~~a~~~~~~~~~ 277 (423)
+...++++.|.++.-.+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555544
No 373
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.95 E-value=2.3e+02 Score=21.94 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=51.7
Q ss_pred cChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 014502 69 SSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF 146 (423)
Q Consensus 69 p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 146 (423)
|....|..|+.. +-.|.+.+++-++ . ..+.-+..-|..| +|-+.+++..|+..++.+.+..+..|+.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L----~---~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~-- 98 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHL----H---KLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPD-- 98 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHH----H---TCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCC--
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHH----H---hcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcc--
Confidence 333355566555 4667777766652 2 1111122222222 4456667777777777776544332110
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502 147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIA 207 (423)
Q Consensus 147 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 207 (423)
++.- ++.|.- . +.|. .-|+.+...|...|+.++|++.+..--.
T Consensus 99 ------------~d~~---~~~ffv-d--~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 99 ------------VDAR---IQEMFV-D--PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp ------------CCHH---HHTTSC-C--TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cccc---cceeee-c--cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 1110 111111 0 1222 3455555667777777777777765443
No 374
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.78 E-value=1e+02 Score=22.75 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHH
Q 014502 72 FSWDALITSLQSSSPKKAQLV 92 (423)
Q Consensus 72 ~~~~~li~~~~~~~~~~a~~~ 92 (423)
...+.+..++..|+.+....+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~l 27 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKL 27 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHH
Confidence 344555556666665555444
No 375
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.68 E-value=46 Score=20.35 Aligned_cols=8 Identities=13% Similarity=0.078 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014502 198 MNKWYAAN 205 (423)
Q Consensus 198 a~~~~~~m 205 (423)
|++.|.+|
T Consensus 5 ae~aF~~l 12 (59)
T 2b7e_A 5 AEKEFITM 12 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 376
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.38 E-value=78 Score=23.24 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=21.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502 220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264 (423)
Q Consensus 220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 264 (423)
++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444444455555555554444455554444455554443
No 377
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.04 E-value=50 Score=26.20 Aligned_cols=47 Identities=4% Similarity=-0.040 Sum_probs=21.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502 186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233 (423)
Q Consensus 186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 233 (423)
+...++.|+.+.+..+++.-.......+...++. +...+..|+.+-+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v 52 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP-LHWSVSFQAHEIT 52 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCH-HHHHHHcCCHHHH
Confidence 4455667777666655554322211123333333 3334455665433
No 378
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.67 E-value=3.1e+02 Score=23.02 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH---hHHHHHHHHHhcCCHHHHHHHHHH
Q 014502 235 RFYEEMMSLGIIPSIPI--LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN---MAQKLVKCYCELGRVDELEEQLET 309 (423)
Q Consensus 235 ~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~ 309 (423)
++.+.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++.. -.+.| ...+..|+.+- .+.
T Consensus 228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~n~~d~~g~t~L-~~A~~~~~~~~----v~~ 298 (351)
T 3utm_A 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV----MEVLHKHGAKMNALDSLGQTAL-HRAALAGHLQT----CRL 298 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHH----HHH
T ss_pred HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHHH----HHH
Confidence 44555566665543221 1223444556777754 44445566554422 12233 33445676654 444
Q ss_pred HHhCCCCCc
Q 014502 310 LTKCNQSPE 318 (423)
Q Consensus 310 ~~~~~~~p~ 318 (423)
+.+.|..|+
T Consensus 299 Ll~~gad~~ 307 (351)
T 3utm_A 299 LLSYGSDPS 307 (351)
T ss_dssp HHHTTCCTT
T ss_pred HHHcCCCCC
Confidence 445555554
No 379
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.53 E-value=2.6e+02 Score=22.06 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCC
Q 014502 254 KVLEGLC---ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-----DELEEQLETLTKCNQ 315 (423)
Q Consensus 254 ~li~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~ 315 (423)
-+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+.-..|.- ..|...++.....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3555654 4589999999999999999777665555555555555543 234445555555443
No 380
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.51 E-value=1e+02 Score=22.68 Aligned_cols=13 Identities=38% Similarity=0.353 Sum_probs=5.5
Q ss_pred HccCCHHHHHHHH
Q 014502 154 LCSGDVVTALSLF 166 (423)
Q Consensus 154 ~~~g~~~~A~~~~ 166 (423)
++.|+.+....++
T Consensus 16 ~~~g~~~~v~~ll 28 (165)
T 3twr_A 16 AKAGDVETVKKLC 28 (165)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHhCCHHHHHHHH
Confidence 3344444444333
No 381
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.07 E-value=1.5e+02 Score=22.53 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 014502 254 KVLEGLCARRKLDRVKSFLKFLL 276 (423)
Q Consensus 254 ~li~~~~~~g~~~~a~~~~~~~~ 276 (423)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444444555555555555543
No 382
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=23.02 E-value=71 Score=25.15 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=3.0
Q ss_pred HhcCCHH
Q 014502 295 CELGRVD 301 (423)
Q Consensus 295 ~~~g~~~ 301 (423)
+..|+.+
T Consensus 133 ~~~~~~~ 139 (223)
T 2f8y_A 133 AAVNNVD 139 (223)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3444443
No 383
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.02 E-value=3.8e+02 Score=23.47 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCH
Q 014502 145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNV--DAMNKWYAANIAAGFSVNV 214 (423)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~ 214 (423)
....+|.-|...|+.++|.+.++++.. |+ ...+. ++......++. +.+-.++..+...++-+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~-----p~~~~~~~v~~-~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA-----PKHFLPEMLSK-VIILSLDRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-----CGGGHHHHHHH-HHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-----chhhHHHHHHH-HHHHHHCCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 467789999999999999999999864 54 22333 34333333332 4566677777766554333
No 384
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.64 E-value=1.9e+02 Score=20.55 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=5.2
Q ss_pred CChhHHHHHHHHH
Q 014502 122 QNVPFAMHVFTSM 134 (423)
Q Consensus 122 ~~~~~a~~~~~~m 134 (423)
++++.|.++.-.+
T Consensus 75 ~dy~~A~~ih~~l 87 (118)
T 2yru_A 75 HQWDAADDIHRSL 87 (118)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3444444443333
No 385
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.41 E-value=85 Score=22.52 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 014502 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSL 165 (423)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 165 (423)
|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|-..=+++.++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566666777777777777776665 566666666666666566555543
No 386
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.38 E-value=1.1e+02 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 014502 75 DALITSLQSSSPKKAQLV 92 (423)
Q Consensus 75 ~~li~~~~~~~~~~a~~~ 92 (423)
+.+..++..|+.+....+
T Consensus 4 ~~L~~A~~~g~~~~v~~l 21 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRL 21 (156)
T ss_dssp HHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHhCCHHHHHHH
Confidence 345555677776666665
No 387
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.36 E-value=1.1e+02 Score=20.18 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH
Q 014502 159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190 (423)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 190 (423)
.++|...|.+|....++.|+ .||...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHc
Confidence 45666667766665555555 35555554444
No 388
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.27 E-value=4.4e+02 Score=23.85 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502 219 SLIHGSL---KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-----LDRVKSFLKFLLGGGWKINENMAQKL 290 (423)
Q Consensus 219 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~g~~~~~~~~~~l 290 (423)
.+++++. +.++.+.|+..+.+|.+.|..|....=..++.+.-..|. ...|...++.....|.+-........
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~ 336 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQA 336 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3444443 457888999999999888876655555555555555554 34566777777777764333333333
Q ss_pred HHHHHhcCC
Q 014502 291 VKCYCELGR 299 (423)
Q Consensus 291 i~~~~~~g~ 299 (423)
+-.++..-+
T Consensus 337 ~~~la~~pk 345 (447)
T 3pvs_A 337 IVYLACAPK 345 (447)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHcCCc
Confidence 333344433
No 389
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.44 E-value=89 Score=25.32 Aligned_cols=24 Identities=0% Similarity=-0.310 Sum_probs=12.7
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCC
Q 014502 117 LSGKVQNVPFAMHVFTSMEAQGIK 140 (423)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~ 140 (423)
..++.|+.+.+..+++.+.+.|..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344555655555555555555543
No 390
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.28 E-value=6.4e+02 Score=25.41 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502 183 DAFISGFSSLGNV---DAMNKWYAANIAAG----FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV 255 (423)
Q Consensus 183 ~~li~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 255 (423)
..++...|..|+. ++|.+.|++....+ +.||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3456667777763 56777777766532 445543 22333344557666666666666653 334445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 014502 256 LEGLCARRKLDRVKSFLKFLLGG 278 (423)
Q Consensus 256 i~~~~~~g~~~~a~~~~~~~~~~ 278 (423)
+.+++...+.+...++++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCC
Confidence 77888788888877777776653
No 391
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.16 E-value=1.3e+02 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 014502 260 CARRKLDRVKSFLKFLLGGGW 280 (423)
Q Consensus 260 ~~~g~~~~a~~~~~~~~~~g~ 280 (423)
+..|+.+.+..+++.+.+.|.
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHcCC
Confidence 444555555445554444443
No 392
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.70 E-value=2.8e+02 Score=21.01 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 014502 225 LKARDFDSVDRFYEEMMSLGIIP--SIPILEKVLE-G-----LCARRKLDRVKSFLKFLLG 277 (423)
Q Consensus 225 ~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 277 (423)
...|++-+|.++++..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34477777777777775543334 3345555555 2 1345666666666666543
No 393
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=20.30 E-value=1.3e+02 Score=22.31 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=7.0
Q ss_pred HHhcCCHHHHHHHH
Q 014502 224 SLKARDFDSVDRFY 237 (423)
Q Consensus 224 ~~~~g~~~~a~~~~ 237 (423)
.++.|+.+....++
T Consensus 9 A~~~g~~~~v~~ll 22 (172)
T 3v30_A 9 LAAQGELDQLKEHL 22 (172)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44555555544444
Done!