BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014507
         (423 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
           Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
 pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
           Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
          Length = 614

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 41  KPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMT 100
           K  K +RSLRSGP+   +K         +D  ++         +T E++  + +F   +T
Sbjct: 4   KHHKLARSLRSGPSDHDLKP----NAATRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLT 59

Query: 101 KRCKAFVKQIICVS----PETGNLSDLLAAW 127
            + KA  K + CV+     E     +LL  W
Sbjct: 60  NQEKALTKFLKCVNWDLPQEAKQALELLGKW 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,532,445
Number of Sequences: 62578
Number of extensions: 429195
Number of successful extensions: 928
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 4
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)