Query 014507
Match_columns 423
No_of_seqs 444 out of 2765
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:49:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-58 2.7E-63 466.7 37.0 367 46-416 448-848 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.6E-58 5.6E-63 464.5 37.1 368 46-415 381-789 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 8.6E-56 1.9E-60 442.4 28.4 338 60-407 146-489 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9E-55 2E-59 435.1 29.5 364 46-423 200-570 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.8E-54 1.7E-58 438.1 30.9 356 46-407 163-652 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.9E-53 6.2E-58 433.9 27.8 358 45-412 61-456 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 7.5E-21 1.6E-25 197.8 37.0 309 90-407 584-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.4E-20 5.2E-25 194.0 37.4 351 46-409 442-799 (899)
9 PRK11788 tetratricopeptide rep 99.9 3E-20 6.6E-25 174.6 34.4 296 113-414 44-352 (389)
10 PRK11788 tetratricopeptide rep 99.9 9.4E-20 2E-24 171.3 30.2 289 87-381 49-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 9.5E-16 2.1E-20 151.8 36.9 318 46-374 53-381 (656)
12 PRK15174 Vi polysaccharide exp 99.8 7.7E-16 1.7E-20 152.5 35.1 315 86-409 55-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-15 5.9E-20 148.8 35.3 352 46-408 138-570 (615)
14 KOG4626 O-linked N-acetylgluco 99.7 2.4E-16 5.1E-21 144.1 20.3 282 106-397 220-507 (966)
15 KOG4422 Uncharacterized conser 99.7 2E-14 4.3E-19 126.3 30.0 309 102-416 205-559 (625)
16 TIGR00990 3a0801s09 mitochondr 99.7 1.3E-13 2.7E-18 137.0 39.7 298 106-409 129-496 (615)
17 KOG4626 O-linked N-acetylgluco 99.7 9.6E-16 2.1E-20 140.2 21.4 225 173-407 255-483 (966)
18 PRK11447 cellulose synthase su 99.7 3.7E-14 8.1E-19 149.8 35.4 352 46-408 280-739 (1157)
19 PRK11447 cellulose synthase su 99.7 4.8E-13 1E-17 141.5 37.9 317 87-409 283-700 (1157)
20 KOG4422 Uncharacterized conser 99.7 2.7E-13 5.7E-18 119.3 28.8 337 75-413 208-594 (625)
21 PRK10049 pgaA outer membrane p 99.7 8E-13 1.7E-17 133.8 35.7 355 46-409 26-456 (765)
22 PRK10747 putative protoheme IX 99.7 2.4E-12 5.2E-17 120.4 35.1 278 117-406 97-387 (398)
23 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.5E-17 120.9 33.6 286 115-406 95-396 (409)
24 PRK10049 pgaA outer membrane p 99.6 1.4E-11 3E-16 124.9 38.1 319 87-410 29-423 (765)
25 PRK14574 hmsH outer membrane p 99.6 1.1E-11 2.3E-16 124.0 33.3 354 46-408 45-478 (822)
26 PRK14574 hmsH outer membrane p 99.6 1.8E-11 4E-16 122.3 34.3 352 46-407 79-511 (822)
27 PF13429 TPR_15: Tetratricopep 99.6 2.1E-14 4.6E-19 128.3 12.3 257 142-406 15-274 (280)
28 PF13429 TPR_15: Tetratricopep 99.5 6.8E-14 1.5E-18 125.0 12.8 258 109-373 13-276 (280)
29 PRK09782 bacteriophage N4 rece 99.5 8.9E-11 1.9E-15 119.8 36.6 285 114-409 386-706 (987)
30 PRK10747 putative protoheme IX 99.5 2E-11 4.2E-16 114.4 29.7 279 86-373 97-389 (398)
31 COG2956 Predicted N-acetylgluc 99.5 1.8E-10 3.8E-15 98.3 29.0 293 117-415 48-353 (389)
32 KOG2076 RNA polymerase III tra 99.5 1.5E-10 3.3E-15 111.1 31.3 333 84-420 150-522 (895)
33 COG3071 HemY Uncharacterized e 99.5 8.7E-10 1.9E-14 96.9 33.1 282 116-407 96-388 (400)
34 PRK09782 bacteriophage N4 rece 99.5 4.2E-10 9.1E-15 115.0 35.4 260 134-406 476-737 (987)
35 KOG1126 DNA-binding cell divis 99.5 2.8E-11 6E-16 112.6 24.1 281 119-409 334-620 (638)
36 KOG1155 Anaphase-promoting com 99.5 3.5E-10 7.6E-15 101.0 28.7 258 144-406 236-533 (559)
37 TIGR02521 type_IV_pilW type IV 99.5 2.1E-10 4.5E-15 99.4 27.4 200 170-407 31-230 (234)
38 TIGR00540 hemY_coli hemY prote 99.4 4.1E-10 8.9E-15 106.0 30.2 283 87-373 98-398 (409)
39 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.3E-15 98.0 27.6 200 135-338 31-231 (234)
40 KOG1126 DNA-binding cell divis 99.4 3.4E-11 7.4E-16 112.0 21.3 276 90-375 336-621 (638)
41 PF13041 PPR_2: PPR repeat fam 99.4 7.7E-13 1.7E-17 84.0 6.6 49 308-356 1-49 (50)
42 KOG2003 TPR repeat-containing 99.4 3E-10 6.5E-15 101.1 24.8 209 180-395 500-709 (840)
43 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.3E-17 83.4 6.7 49 203-251 1-49 (50)
44 KOG1155 Anaphase-promoting com 99.4 2E-09 4.4E-14 96.2 28.0 289 110-408 170-494 (559)
45 COG2956 Predicted N-acetylgluc 99.4 1.6E-09 3.4E-14 92.6 26.1 255 148-407 48-310 (389)
46 KOG2002 TPR-containing nuclear 99.4 1.1E-09 2.4E-14 106.1 27.7 363 37-407 309-743 (1018)
47 PRK12370 invasion protein regu 99.3 4.3E-09 9.4E-14 102.9 31.8 265 134-410 255-536 (553)
48 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.8E-13 89.7 29.7 285 86-379 97-395 (400)
49 PRK12370 invasion protein regu 99.3 4.4E-09 9.6E-14 102.9 29.5 233 168-409 254-502 (553)
50 KOG4318 Bicoid mRNA stability 99.3 4.1E-11 8.8E-16 114.5 13.7 242 130-395 20-286 (1088)
51 KOG2003 TPR repeat-containing 99.3 2E-08 4.3E-13 89.7 28.5 365 38-409 204-689 (840)
52 KOG2076 RNA polymerase III tra 99.3 7E-09 1.5E-13 99.9 27.1 355 46-408 150-554 (895)
53 KOG4318 Bicoid mRNA stability 99.2 5E-10 1.1E-14 107.3 17.7 248 60-325 13-286 (1088)
54 PF12569 NARP1: NMDA receptor- 99.2 3E-08 6.5E-13 94.2 29.4 287 113-408 13-333 (517)
55 KOG1129 TPR repeat-containing 99.2 2.1E-09 4.6E-14 91.9 19.2 231 173-409 226-458 (478)
56 KOG1840 Kinesin light chain [C 99.2 3.1E-08 6.7E-13 93.1 26.3 242 166-407 195-477 (508)
57 KOG0547 Translocase of outer m 99.2 4.1E-08 8.9E-13 88.6 25.6 223 178-405 334-562 (606)
58 KOG2002 TPR-containing nuclear 99.1 1.1E-07 2.3E-12 92.7 28.6 201 169-372 269-479 (1018)
59 KOG1129 TPR repeat-containing 99.1 7.1E-09 1.5E-13 88.8 18.3 231 138-374 226-458 (478)
60 KOG0495 HAT repeat protein [RN 99.1 9.9E-07 2.1E-11 82.6 33.2 272 90-368 423-708 (913)
61 KOG1840 Kinesin light chain [C 99.1 8.2E-08 1.8E-12 90.3 25.6 237 136-372 200-477 (508)
62 PRK11189 lipoprotein NlpI; Pro 99.1 3.1E-07 6.8E-12 82.5 26.7 198 170-376 64-267 (296)
63 PRK11189 lipoprotein NlpI; Pro 99.1 2.4E-07 5.2E-12 83.2 25.7 220 182-410 38-266 (296)
64 KOG1173 Anaphase-promoting com 99.1 6.1E-07 1.3E-11 82.7 28.1 279 107-392 247-534 (611)
65 PF12569 NARP1: NMDA receptor- 99.1 5.4E-07 1.2E-11 85.8 28.9 259 143-411 12-293 (517)
66 KOG1915 Cell cycle control pro 99.1 1.5E-06 3.2E-11 78.6 29.5 155 253-411 379-538 (677)
67 KOG0495 HAT repeat protein [RN 99.0 2.9E-06 6.4E-11 79.6 31.3 296 105-408 551-879 (913)
68 COG3063 PilF Tfp pilus assembl 99.0 7.7E-07 1.7E-11 73.1 23.5 197 173-373 38-235 (250)
69 COG3063 PilF Tfp pilus assembl 98.9 2.9E-06 6.3E-11 69.7 24.9 196 207-406 37-233 (250)
70 cd05804 StaR_like StaR_like; a 98.9 1.1E-05 2.4E-10 74.8 32.8 298 107-408 9-335 (355)
71 KOG1915 Cell cycle control pro 98.9 5.1E-05 1.1E-09 68.9 31.9 135 274-410 321-501 (677)
72 cd05804 StaR_like StaR_like; a 98.9 1.7E-05 3.6E-10 73.7 30.6 268 137-409 8-293 (355)
73 PF12854 PPR_1: PPR repeat 98.8 7.1E-09 1.5E-13 59.1 4.5 33 375-407 2-34 (34)
74 PF12854 PPR_1: PPR repeat 98.8 5.8E-09 1.3E-13 59.5 4.1 32 305-336 2-33 (34)
75 KOG1173 Anaphase-promoting com 98.8 6.3E-06 1.4E-10 76.2 25.3 257 140-406 249-515 (611)
76 KOG1174 Anaphase-promoting com 98.8 3.8E-05 8.2E-10 68.6 28.5 236 164-408 226-499 (564)
77 KOG0547 Translocase of outer m 98.8 1.3E-06 2.9E-11 79.1 19.8 217 148-373 339-565 (606)
78 KOG1156 N-terminal acetyltrans 98.8 4.5E-05 9.8E-10 71.8 29.7 361 35-411 41-470 (700)
79 KOG1174 Anaphase-promoting com 98.8 1.7E-05 3.8E-10 70.6 25.6 262 102-374 230-500 (564)
80 PLN02789 farnesyltranstransfer 98.7 2.6E-05 5.6E-10 70.3 26.8 231 176-413 43-306 (320)
81 PF04733 Coatomer_E: Coatomer 98.7 4E-07 8.7E-12 80.7 15.0 242 117-373 14-264 (290)
82 PF04733 Coatomer_E: Coatomer 98.7 7.1E-07 1.5E-11 79.2 15.4 224 170-408 35-264 (290)
83 KOG1125 TPR repeat-containing 98.6 9.8E-06 2.1E-10 75.2 21.3 247 146-403 296-565 (579)
84 TIGR03302 OM_YfiO outer membra 98.6 1.4E-05 3E-10 69.4 20.5 185 204-409 32-232 (235)
85 KOG4340 Uncharacterized conser 98.6 1.1E-05 2.4E-10 68.8 18.5 320 77-406 13-372 (459)
86 TIGR03302 OM_YfiO outer membra 98.6 2.4E-05 5.2E-10 68.0 21.1 189 167-374 30-232 (235)
87 KOG1128 Uncharacterized conser 98.6 2.1E-05 4.6E-10 75.0 21.4 231 110-357 404-635 (777)
88 KOG1070 rRNA processing protei 98.6 0.00012 2.6E-09 74.7 27.6 225 168-398 1456-1689(1710)
89 KOG2047 mRNA splicing factor [ 98.5 0.00072 1.6E-08 64.0 29.6 299 104-407 248-613 (835)
90 KOG0624 dsRNA-activated protei 98.5 0.00063 1.4E-08 59.6 27.3 293 109-409 43-370 (504)
91 PLN02789 farnesyltranstransfer 98.5 0.00034 7.4E-09 63.1 26.7 168 185-357 87-267 (320)
92 KOG1070 rRNA processing protei 98.5 0.00011 2.4E-09 74.9 25.5 236 132-371 1454-1697(1710)
93 KOG4340 Uncharacterized conser 98.5 3.2E-05 7E-10 66.1 18.6 317 44-373 19-374 (459)
94 PRK10370 formate-dependent nit 98.5 6.2E-05 1.4E-09 63.1 20.5 119 218-339 52-173 (198)
95 COG5010 TadD Flp pilus assembl 98.5 0.00011 2.4E-09 61.9 21.2 154 211-368 72-225 (257)
96 KOG4162 Predicted calmodulin-b 98.5 0.00051 1.1E-08 66.3 28.2 124 280-407 655-781 (799)
97 COG5010 TadD Flp pilus assembl 98.5 3.3E-05 7.1E-10 65.0 17.9 158 174-335 70-227 (257)
98 PRK04841 transcriptional regul 98.5 0.0006 1.3E-08 71.7 32.0 294 115-408 420-759 (903)
99 KOG1128 Uncharacterized conser 98.5 2E-05 4.4E-10 75.1 18.3 215 173-409 401-616 (777)
100 PRK15179 Vi polysaccharide bio 98.4 0.00017 3.8E-09 71.6 25.6 134 201-338 82-216 (694)
101 PRK10370 formate-dependent nit 98.4 7.8E-05 1.7E-09 62.5 19.8 127 183-313 52-181 (198)
102 KOG1125 TPR repeat-containing 98.4 2.5E-05 5.4E-10 72.6 17.8 221 178-406 293-524 (579)
103 KOG0624 dsRNA-activated protei 98.4 0.00053 1.2E-08 60.0 24.4 283 86-374 51-370 (504)
104 KOG2376 Signal recognition par 98.4 0.00032 6.9E-09 65.6 24.2 60 176-235 181-254 (652)
105 PRK15359 type III secretion sy 98.4 5E-05 1.1E-09 60.1 16.8 90 211-302 30-119 (144)
106 KOG1156 N-terminal acetyltrans 98.4 0.0023 5.1E-08 60.7 30.7 302 102-411 73-436 (700)
107 PRK15179 Vi polysaccharide bio 98.4 0.00054 1.2E-08 68.2 26.8 204 167-387 25-229 (694)
108 KOG2047 mRNA splicing factor [ 98.4 0.0021 4.7E-08 60.9 28.8 224 108-336 173-451 (835)
109 PRK15359 type III secretion sy 98.3 5.1E-05 1.1E-09 60.1 15.6 97 172-270 26-122 (144)
110 PRK04841 transcriptional regul 98.3 0.0027 5.9E-08 66.8 32.4 266 143-408 417-719 (903)
111 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 50.3 4.5 33 312-344 2-34 (35)
112 KOG3617 WD40 and TPR repeat-co 98.3 0.00036 7.9E-09 67.7 22.7 144 176-337 832-994 (1416)
113 KOG3785 Uncharacterized conser 98.3 0.00047 1E-08 60.6 21.3 284 117-410 164-491 (557)
114 PRK14720 transcript cleavage f 98.3 0.00055 1.2E-08 69.1 24.6 218 102-356 29-268 (906)
115 KOG3081 Vesicle coat complex C 98.3 0.0012 2.5E-08 56.0 22.3 243 117-374 21-271 (299)
116 KOG3081 Vesicle coat complex C 98.3 0.0004 8.7E-09 58.7 19.5 173 155-338 93-270 (299)
117 PRK14720 transcript cleavage f 98.3 0.00028 6E-09 71.1 22.0 219 135-391 31-268 (906)
118 KOG3785 Uncharacterized conser 98.2 0.00061 1.3E-08 59.9 21.0 197 110-313 291-497 (557)
119 TIGR02552 LcrH_SycD type III s 98.2 8.9E-05 1.9E-09 58.1 15.1 88 248-337 25-112 (135)
120 PF13812 PPR_3: Pentatricopept 98.2 2.7E-06 5.8E-11 48.7 4.5 32 312-343 3-34 (34)
121 KOG3060 Uncharacterized conser 98.2 0.0023 5.1E-08 53.8 23.8 84 218-303 99-182 (289)
122 TIGR00756 PPR pentatricopeptid 98.2 2.9E-06 6.3E-11 48.9 4.6 33 207-239 2-34 (35)
123 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.0002 4.3E-09 66.0 18.6 127 275-407 169-295 (395)
124 KOG3616 Selective LIM binding 98.2 0.00016 3.4E-09 69.3 17.9 195 176-404 738-932 (1636)
125 PF13812 PPR_3: Pentatricopept 98.2 3E-06 6.6E-11 48.5 4.2 29 208-236 4-32 (34)
126 TIGR02552 LcrH_SycD type III s 98.2 0.00018 3.8E-09 56.4 15.7 118 262-384 5-122 (135)
127 KOG2376 Signal recognition par 98.2 0.0069 1.5E-07 57.0 28.1 93 103-200 45-140 (652)
128 PF10037 MRP-S27: Mitochondria 98.2 3.7E-05 8.1E-10 71.0 12.9 124 200-323 61-186 (429)
129 KOG0985 Vesicle coat protein c 98.1 0.0041 8.8E-08 62.1 26.5 85 276-368 1105-1189(1666)
130 COG4783 Putative Zn-dependent 98.1 0.0053 1.1E-07 56.6 25.7 199 167-389 271-471 (484)
131 PF08579 RPM2: Mitochondrial r 98.1 7.6E-05 1.7E-09 54.3 10.9 78 280-357 30-116 (120)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4.1E-09 66.1 16.1 124 173-302 172-295 (395)
133 PF10037 MRP-S27: Mitochondria 98.1 6.2E-05 1.3E-09 69.6 12.8 126 163-288 59-186 (429)
134 PF08579 RPM2: Mitochondrial r 98.1 9.1E-05 2E-09 53.9 10.7 77 210-286 30-115 (120)
135 KOG0985 Vesicle coat protein c 98.1 0.0027 5.8E-08 63.3 23.7 215 170-406 1104-1338(1666)
136 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0032 6.9E-08 56.7 22.7 114 277-410 179-292 (319)
137 PF09976 TPR_21: Tetratricopep 98.0 0.00073 1.6E-08 53.7 16.3 125 277-405 14-143 (145)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00068 1.5E-08 53.8 16.1 20 250-269 58-77 (145)
139 KOG0548 Molecular co-chaperone 98.0 0.013 2.8E-07 54.6 28.0 321 84-410 13-456 (539)
140 KOG4162 Predicted calmodulin-b 98.0 0.013 2.8E-07 57.0 25.8 250 121-374 461-783 (799)
141 PF01535 PPR: PPR repeat; Int 97.9 1E-05 2.2E-10 45.1 3.1 29 312-340 2-30 (31)
142 PF06239 ECSIT: Evolutionarily 97.9 0.00039 8.4E-09 57.3 12.9 47 239-285 46-97 (228)
143 KOG3617 WD40 and TPR repeat-co 97.9 0.004 8.7E-08 60.8 21.4 240 103-372 725-994 (1416)
144 PF06239 ECSIT: Evolutionarily 97.9 0.00037 7.9E-09 57.4 12.4 49 204-252 46-99 (228)
145 COG4783 Putative Zn-dependent 97.9 0.011 2.4E-07 54.6 23.0 163 203-372 272-435 (484)
146 KOG3616 Selective LIM binding 97.9 0.0011 2.4E-08 63.7 17.1 164 217-405 744-907 (1636)
147 KOG3060 Uncharacterized conser 97.9 0.012 2.6E-07 49.6 22.7 185 116-304 24-220 (289)
148 PF01535 PPR: PPR repeat; Int 97.9 2.2E-05 4.9E-10 43.6 3.6 27 208-234 3-29 (31)
149 KOG1914 mRNA cleavage and poly 97.8 0.016 3.4E-07 54.2 23.1 182 221-404 347-534 (656)
150 KOG1914 mRNA cleavage and poly 97.8 0.034 7.3E-07 52.1 30.6 150 256-409 347-501 (656)
151 cd00189 TPR Tetratricopeptide 97.7 0.00096 2.1E-08 47.8 11.6 90 315-406 5-94 (100)
152 cd00189 TPR Tetratricopeptide 97.7 0.00097 2.1E-08 47.8 11.5 89 176-266 6-94 (100)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0023 4.9E-08 48.6 13.8 95 175-269 7-105 (119)
154 KOG2053 Mitochondrial inherita 97.7 0.067 1.5E-06 53.2 30.7 220 116-340 21-256 (932)
155 KOG2053 Mitochondrial inherita 97.7 0.073 1.6E-06 52.9 26.3 222 147-375 21-256 (932)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0029 6.2E-08 48.0 13.9 21 316-336 45-65 (119)
157 PRK10866 outer membrane biogen 97.6 0.032 6.9E-07 48.4 21.2 57 177-234 39-98 (243)
158 PF05843 Suf: Suppressor of fo 97.6 0.0023 4.9E-08 57.0 14.4 129 172-303 3-135 (280)
159 PF05843 Suf: Suppressor of fo 97.6 0.0026 5.6E-08 56.6 14.7 144 206-355 2-150 (280)
160 PRK02603 photosystem I assembl 97.6 0.006 1.3E-07 50.0 15.8 82 208-290 38-121 (172)
161 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.6E-09 51.2 5.7 81 323-405 2-83 (84)
162 PF14938 SNAP: Soluble NSF att 97.6 0.0084 1.8E-07 53.5 17.3 26 172-197 37-62 (282)
163 PLN03088 SGT1, suppressor of 97.6 0.003 6.5E-08 58.3 14.7 87 215-303 12-98 (356)
164 PRK02603 photosystem I assembl 97.5 0.011 2.3E-07 48.5 15.9 94 169-263 34-129 (172)
165 KOG0548 Molecular co-chaperone 97.5 0.09 1.9E-06 49.3 22.8 220 139-374 228-455 (539)
166 CHL00033 ycf3 photosystem I as 97.5 0.0036 7.7E-08 51.1 12.7 61 243-303 38-100 (168)
167 PF12895 Apc3: Anaphase-promot 97.5 0.00033 7.1E-09 49.7 5.7 47 184-230 3-50 (84)
168 PRK10866 outer membrane biogen 97.5 0.061 1.3E-06 46.7 22.9 185 204-408 31-240 (243)
169 PRK15363 pathogenicity island 97.4 0.0098 2.1E-07 46.9 14.0 91 211-303 41-131 (157)
170 CHL00033 ycf3 photosystem I as 97.4 0.0048 1E-07 50.3 13.1 96 274-371 34-139 (168)
171 PLN03088 SGT1, suppressor of 97.4 0.0054 1.2E-07 56.6 14.8 94 176-271 8-101 (356)
172 KOG1127 TPR repeat-containing 97.4 0.053 1.1E-06 54.6 21.4 216 185-406 473-697 (1238)
173 PRK10153 DNA-binding transcrip 97.4 0.02 4.4E-07 55.4 18.4 134 201-338 333-481 (517)
174 PRK10153 DNA-binding transcrip 97.3 0.02 4.4E-07 55.4 17.9 145 164-313 331-489 (517)
175 PF14938 SNAP: Soluble NSF att 97.3 0.04 8.8E-07 49.2 18.7 164 208-373 38-224 (282)
176 PRK15363 pathogenicity island 97.2 0.014 3.1E-07 46.0 12.8 97 171-269 36-132 (157)
177 PF12688 TPR_5: Tetratrico pep 97.2 0.03 6.6E-07 42.4 13.8 20 282-301 45-64 (120)
178 KOG1127 TPR repeat-containing 97.2 0.032 6.9E-07 56.0 17.1 181 119-302 473-657 (1238)
179 PF14559 TPR_19: Tetratricopep 97.1 0.0024 5.2E-08 43.0 6.7 52 182-234 3-54 (68)
180 KOG2280 Vacuolar assembly/sort 97.1 0.12 2.6E-06 50.5 19.7 117 273-408 682-798 (829)
181 PF12688 TPR_5: Tetratrico pep 97.1 0.045 9.8E-07 41.4 13.9 55 214-268 10-66 (120)
182 PF03704 BTAD: Bacterial trans 97.1 0.018 4E-07 45.6 12.5 58 278-336 65-122 (146)
183 PF14559 TPR_19: Tetratricopep 97.0 0.0026 5.6E-08 42.8 6.2 50 288-338 4-53 (68)
184 KOG0553 TPR repeat-containing 97.0 0.012 2.6E-07 51.0 11.4 100 214-317 90-189 (304)
185 PF08631 SPO22: Meiosis protei 97.0 0.22 4.8E-06 44.3 24.4 222 180-405 3-271 (278)
186 KOG0553 TPR repeat-containing 97.0 0.017 3.7E-07 50.1 12.1 102 249-355 90-192 (304)
187 PF13525 YfiO: Outer membrane 97.0 0.17 3.7E-06 42.6 19.0 59 176-234 11-71 (203)
188 KOG2796 Uncharacterized conser 97.0 0.049 1.1E-06 46.4 14.0 132 172-304 179-315 (366)
189 KOG1538 Uncharacterized conser 96.9 0.042 9.1E-07 52.6 14.9 241 106-373 558-845 (1081)
190 PF13432 TPR_16: Tetratricopep 96.9 0.0062 1.3E-07 40.5 7.0 54 284-338 6-59 (65)
191 COG4700 Uncharacterized protei 96.9 0.18 3.9E-06 40.8 19.0 130 237-370 86-218 (251)
192 PF13525 YfiO: Outer membrane 96.9 0.18 3.9E-06 42.5 17.3 179 210-401 10-199 (203)
193 PF13432 TPR_16: Tetratricopep 96.8 0.0069 1.5E-07 40.3 6.8 54 179-233 6-59 (65)
194 PF13414 TPR_11: TPR repeat; P 96.8 0.0086 1.9E-07 40.4 7.2 61 171-232 4-65 (69)
195 PF04840 Vps16_C: Vps16, C-ter 96.7 0.44 9.6E-06 43.1 24.2 88 311-408 178-265 (319)
196 PF12921 ATP13: Mitochondrial 96.7 0.057 1.2E-06 41.3 11.8 99 274-392 1-100 (126)
197 COG4700 Uncharacterized protei 96.7 0.24 5.3E-06 40.0 18.6 133 201-337 85-220 (251)
198 PF13414 TPR_11: TPR repeat; P 96.7 0.012 2.7E-07 39.6 7.4 64 204-268 2-66 (69)
199 PF12921 ATP13: Mitochondrial 96.7 0.044 9.5E-07 42.0 10.9 100 239-358 1-101 (126)
200 PRK10803 tol-pal system protei 96.7 0.036 7.9E-07 48.6 11.8 97 276-374 144-246 (263)
201 PF03704 BTAD: Bacterial trans 96.6 0.029 6.3E-07 44.5 10.3 73 311-384 63-140 (146)
202 COG4235 Cytochrome c biogenesi 96.6 0.22 4.7E-06 43.6 15.8 101 237-339 153-256 (287)
203 KOG3941 Intermediate in Toll s 96.6 0.019 4.2E-07 49.2 9.0 117 167-302 64-186 (406)
204 PRK10803 tol-pal system protei 96.5 0.083 1.8E-06 46.3 13.2 96 173-268 146-245 (263)
205 COG3898 Uncharacterized membra 96.5 0.66 1.4E-05 42.1 30.8 291 106-408 84-391 (531)
206 PF13281 DUF4071: Domain of un 96.4 0.74 1.6E-05 42.3 19.3 165 208-374 144-334 (374)
207 KOG2796 Uncharacterized conser 96.3 0.59 1.3E-05 40.1 17.5 132 207-339 179-315 (366)
208 PF13371 TPR_9: Tetratricopept 96.2 0.048 1E-06 37.1 8.1 54 284-338 4-57 (73)
209 PF13424 TPR_12: Tetratricopep 96.2 0.026 5.6E-07 39.1 6.8 24 313-336 8-31 (78)
210 COG4235 Cytochrome c biogenesi 96.2 0.42 9E-06 41.9 15.2 98 204-303 155-255 (287)
211 PF13170 DUF4003: Protein of u 96.1 0.33 7.2E-06 43.4 15.0 130 221-352 78-224 (297)
212 KOG2280 Vacuolar assembly/sort 96.1 1.6 3.4E-05 43.2 21.6 287 107-408 440-772 (829)
213 PF13371 TPR_9: Tetratricopept 96.0 0.064 1.4E-06 36.5 7.9 55 179-234 4-58 (73)
214 KOG3941 Intermediate in Toll s 96.0 0.082 1.8E-06 45.5 9.7 103 204-325 66-173 (406)
215 PF10300 DUF3808: Protein of u 96.0 0.55 1.2E-05 45.2 16.7 164 243-409 191-376 (468)
216 PF07079 DUF1347: Protein of u 95.9 1.4 3.1E-05 40.9 28.1 357 47-410 18-525 (549)
217 PF13424 TPR_12: Tetratricopep 95.9 0.027 5.9E-07 39.0 5.8 62 345-406 5-72 (78)
218 PF04053 Coatomer_WDAD: Coatom 95.9 0.32 6.9E-06 46.2 14.4 158 178-370 269-427 (443)
219 PF13281 DUF4071: Domain of un 95.7 1.6 3.6E-05 40.1 19.7 168 170-339 141-334 (374)
220 PF04053 Coatomer_WDAD: Coatom 95.7 0.49 1.1E-05 45.0 14.9 133 170-335 295-427 (443)
221 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.61 1.3E-05 43.1 14.5 127 173-302 400-529 (660)
222 smart00299 CLH Clathrin heavy 95.6 0.85 1.8E-05 35.7 14.5 40 177-217 14-53 (140)
223 KOG2041 WD40 repeat protein [G 95.6 1.2 2.6E-05 43.6 16.6 62 313-374 1024-1086(1189)
224 PRK15331 chaperone protein Sic 95.5 0.73 1.6E-05 36.7 12.9 90 282-373 44-133 (165)
225 smart00299 CLH Clathrin heavy 95.5 0.91 2E-05 35.5 15.3 42 210-252 12-53 (140)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.66 1.4E-05 43.3 14.3 68 167-234 72-141 (453)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.34 7.4E-06 45.2 12.4 66 134-199 74-141 (453)
228 PF09205 DUF1955: Domain of un 95.5 0.83 1.8E-05 34.8 14.9 67 309-376 85-151 (161)
229 KOG1130 Predicted G-alpha GTPa 95.4 0.28 6.2E-06 44.7 11.4 128 277-404 197-339 (639)
230 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.3 5.1E-05 39.5 21.4 149 204-358 396-548 (660)
231 PRK15331 chaperone protein Sic 95.3 1.1 2.4E-05 35.7 15.0 88 214-303 46-133 (165)
232 PF13170 DUF4003: Protein of u 95.3 1.8 3.8E-05 38.8 16.2 130 186-317 78-224 (297)
233 KOG2041 WD40 repeat protein [G 95.3 3.3 7.2E-05 40.7 21.9 187 201-396 848-1073(1189)
234 KOG0543 FKBP-type peptidyl-pro 95.2 0.89 1.9E-05 41.5 13.9 95 311-408 258-354 (397)
235 PF10300 DUF3808: Protein of u 95.2 1.7 3.6E-05 41.9 16.8 128 175-304 193-334 (468)
236 KOG1130 Predicted G-alpha GTPa 94.9 0.76 1.6E-05 42.0 12.5 261 113-373 26-343 (639)
237 KOG2610 Uncharacterized conser 94.9 1.1 2.4E-05 39.8 13.1 192 216-409 114-315 (491)
238 KOG0543 FKBP-type peptidyl-pro 94.7 0.81 1.7E-05 41.8 12.3 91 177-268 215-319 (397)
239 KOG1538 Uncharacterized conser 94.7 0.53 1.2E-05 45.5 11.5 244 45-305 566-847 (1081)
240 KOG0550 Molecular chaperone (D 94.7 3.5 7.6E-05 38.0 16.8 277 109-391 54-368 (486)
241 PF07035 Mic1: Colon cancer-as 94.5 2.1 4.6E-05 34.4 14.7 101 226-336 15-115 (167)
242 KOG2114 Vacuolar assembly/sort 94.4 3.2 6.9E-05 41.7 16.3 178 171-371 335-516 (933)
243 KOG1585 Protein required for f 94.4 2.9 6.3E-05 35.7 17.3 206 171-403 32-250 (308)
244 COG1729 Uncharacterized protei 94.3 0.77 1.7E-05 39.7 10.9 97 277-374 144-244 (262)
245 KOG1941 Acetylcholine receptor 94.3 3.2 7E-05 37.5 14.6 125 211-335 128-271 (518)
246 PF09205 DUF1955: Domain of un 94.3 1.9 4E-05 33.0 13.6 67 344-411 85-151 (161)
247 COG3629 DnrI DNA-binding trans 94.2 0.85 1.8E-05 40.0 11.0 73 207-280 155-232 (280)
248 COG3898 Uncharacterized membra 94.1 4.5 9.8E-05 37.0 26.0 249 115-374 131-392 (531)
249 PF04184 ST7: ST7 protein; In 94.0 3.8 8.2E-05 38.8 15.2 62 277-338 261-323 (539)
250 COG1729 Uncharacterized protei 93.9 2.3 5E-05 36.9 12.8 97 207-304 144-244 (262)
251 COG3629 DnrI DNA-binding trans 93.8 1.1 2.3E-05 39.4 10.8 78 171-249 154-236 (280)
252 PF02259 FAT: FAT domain; Int 93.7 5.5 0.00012 36.6 18.1 65 344-408 145-212 (352)
253 KOG1920 IkappaB kinase complex 93.5 12 0.00025 39.6 21.2 111 277-407 941-1053(1265)
254 KOG2610 Uncharacterized conser 93.4 5.5 0.00012 35.7 16.2 49 183-232 116-164 (491)
255 KOG2114 Vacuolar assembly/sort 93.4 1.6 3.4E-05 43.7 12.3 247 138-409 337-590 (933)
256 KOG4555 TPR repeat-containing 93.4 2.7 5.9E-05 32.0 11.9 52 251-303 54-105 (175)
257 KOG1941 Acetylcholine receptor 93.3 6.1 0.00013 35.8 15.1 128 245-372 127-273 (518)
258 KOG4555 TPR repeat-containing 92.9 3.2 7E-05 31.6 12.0 86 216-303 54-143 (175)
259 COG4649 Uncharacterized protei 92.8 4.3 9.4E-05 32.7 13.6 52 252-303 70-122 (221)
260 PF04184 ST7: ST7 protein; In 92.7 9.4 0.0002 36.3 17.8 80 241-320 260-341 (539)
261 COG3118 Thioredoxin domain-con 92.7 6.7 0.00014 34.6 18.2 143 178-324 142-286 (304)
262 COG4105 ComL DNA uptake lipopr 92.7 6.1 0.00013 34.1 20.9 81 205-286 35-117 (254)
263 COG0457 NrfG FOG: TPR repeat [ 92.6 5.3 0.00012 33.3 30.2 200 170-373 59-264 (291)
264 PF07035 Mic1: Colon cancer-as 92.6 4.6 9.9E-05 32.6 16.0 135 190-338 14-148 (167)
265 PF13929 mRNA_stabil: mRNA sta 92.5 5.8 0.00013 34.9 13.2 121 166-286 160-289 (292)
266 PF10602 RPN7: 26S proteasome 92.4 2.7 5.9E-05 34.4 10.9 60 313-372 39-100 (177)
267 PF09613 HrpB1_HrpK: Bacterial 92.4 4.7 0.0001 32.1 13.3 91 179-273 19-110 (160)
268 COG0457 NrfG FOG: TPR repeat [ 92.3 5.9 0.00013 33.0 26.9 199 137-338 61-264 (291)
269 PF13428 TPR_14: Tetratricopep 92.2 0.63 1.4E-05 27.9 5.3 28 207-234 3-30 (44)
270 PF10602 RPN7: 26S proteasome 92.2 2.2 4.7E-05 35.0 10.0 63 171-233 37-101 (177)
271 PF13428 TPR_14: Tetratricopep 92.0 0.92 2E-05 27.2 5.9 28 172-199 3-30 (44)
272 KOG1550 Extracellular protein 91.9 9.2 0.0002 37.9 15.8 85 217-305 261-358 (552)
273 PF13176 TPR_7: Tetratricopept 91.8 0.38 8.1E-06 27.4 3.8 25 382-406 1-25 (36)
274 KOG0550 Molecular chaperone (D 91.7 11 0.00024 34.9 17.3 173 178-359 177-371 (486)
275 PF13512 TPR_18: Tetratricopep 91.5 5.6 0.00012 31.0 12.0 77 177-253 17-95 (142)
276 PF08631 SPO22: Meiosis protei 90.9 11 0.00024 33.5 25.7 62 207-269 86-150 (278)
277 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.5 5.4E-05 30.2 7.6 62 326-388 23-84 (103)
278 PF13176 TPR_7: Tetratricopept 90.9 0.69 1.5E-05 26.3 4.3 23 208-230 2-24 (36)
279 PRK11906 transcriptional regul 90.7 15 0.00033 34.7 16.4 77 293-372 322-399 (458)
280 PF02284 COX5A: Cytochrome c o 90.6 5 0.00011 29.1 9.1 60 328-388 28-87 (108)
281 KOG4570 Uncharacterized conser 90.6 3.8 8.2E-05 36.3 10.1 104 235-340 59-165 (418)
282 COG4105 ComL DNA uptake lipopr 90.5 11 0.00023 32.6 21.2 190 168-374 33-233 (254)
283 TIGR02561 HrpB1_HrpK type III 90.1 7.7 0.00017 30.4 11.7 52 182-235 22-74 (153)
284 KOG4570 Uncharacterized conser 89.8 4.1 9E-05 36.1 9.7 105 163-269 57-164 (418)
285 COG3118 Thioredoxin domain-con 89.4 15 0.00032 32.5 17.7 143 213-359 142-286 (304)
286 PF11207 DUF2989: Protein of u 89.4 4 8.7E-05 33.8 9.0 78 321-400 118-198 (203)
287 PRK11619 lytic murein transgly 89.2 27 0.00058 35.3 23.0 134 46-186 44-179 (644)
288 PF02284 COX5A: Cytochrome c o 88.5 7.7 0.00017 28.1 8.9 46 259-304 29-74 (108)
289 KOG1920 IkappaB kinase complex 88.4 38 0.00081 36.0 19.8 80 318-407 947-1026(1265)
290 PF13929 mRNA_stabil: mRNA sta 88.4 17 0.00037 32.1 22.2 137 256-392 144-290 (292)
291 PF00515 TPR_1: Tetratricopept 88.1 1.7 3.6E-05 24.1 4.5 27 312-338 3-29 (34)
292 PRK11906 transcriptional regul 88.0 25 0.00053 33.4 17.2 131 171-303 252-400 (458)
293 COG4785 NlpI Lipoprotein NlpI, 88.0 15 0.00032 31.0 11.2 29 106-134 101-129 (297)
294 PF09613 HrpB1_HrpK: Bacterial 87.9 12 0.00026 29.8 13.8 18 321-338 55-72 (160)
295 PHA02875 ankyrin repeat protei 87.4 11 0.00023 35.8 12.1 207 115-344 10-229 (413)
296 COG1747 Uncharacterized N-term 87.1 29 0.00063 33.3 21.5 179 204-390 65-249 (711)
297 PF13512 TPR_18: Tetratricopep 86.9 13 0.00028 29.0 12.6 56 284-339 19-76 (142)
298 KOG0276 Vesicle coat complex C 86.9 15 0.00032 35.8 12.1 99 216-335 648-746 (794)
299 PF11207 DUF2989: Protein of u 86.5 13 0.00029 30.8 10.3 73 222-295 123-198 (203)
300 COG4649 Uncharacterized protei 86.5 16 0.00034 29.6 13.9 133 171-304 60-196 (221)
301 KOG1550 Extracellular protein 86.2 37 0.00081 33.7 19.4 183 152-341 229-428 (552)
302 PF13374 TPR_10: Tetratricopep 86.1 2.3 5E-05 24.6 4.5 27 311-337 3-29 (42)
303 KOG0686 COP9 signalosome, subu 86.1 25 0.00053 32.6 12.5 62 207-268 152-215 (466)
304 PF00637 Clathrin: Region in C 85.8 0.25 5.3E-06 38.9 0.1 83 281-370 13-95 (143)
305 KOG0276 Vesicle coat complex C 85.6 14 0.0003 36.1 11.1 97 252-369 649-745 (794)
306 PF13431 TPR_17: Tetratricopep 85.4 1.2 2.7E-05 24.9 2.8 20 310-329 13-32 (34)
307 PF07163 Pex26: Pex26 protein; 85.4 17 0.00036 31.9 10.7 20 317-336 125-144 (309)
308 PF13374 TPR_10: Tetratricopep 85.3 2.7 5.9E-05 24.3 4.6 26 207-232 4-29 (42)
309 PHA02875 ankyrin repeat protei 85.0 18 0.00039 34.2 12.4 211 144-380 8-230 (413)
310 PF13431 TPR_17: Tetratricopep 84.7 1.5 3.3E-05 24.5 3.0 20 205-224 13-32 (34)
311 PF07719 TPR_2: Tetratricopept 84.5 3.3 7.1E-05 22.7 4.5 24 314-337 5-28 (34)
312 PF00637 Clathrin: Region in C 83.6 0.36 7.8E-06 38.0 0.1 51 214-264 16-66 (143)
313 PF00515 TPR_1: Tetratricopept 82.8 4.8 0.0001 22.1 4.7 25 208-232 4-28 (34)
314 PF07163 Pex26: Pex26 protein; 82.7 22 0.00047 31.2 10.3 89 175-263 88-181 (309)
315 TIGR02508 type_III_yscG type I 82.4 16 0.00035 26.4 8.6 78 256-340 21-98 (115)
316 PF07079 DUF1347: Protein of u 81.8 48 0.001 31.4 27.6 205 170-385 298-530 (549)
317 PRK09687 putative lyase; Provi 80.9 41 0.00088 30.0 25.9 236 131-391 33-278 (280)
318 PF07721 TPR_4: Tetratricopept 80.6 3 6.4E-05 21.6 2.9 22 383-404 4-25 (26)
319 PF07719 TPR_2: Tetratricopept 80.2 4.9 0.00011 21.9 4.1 28 381-408 2-29 (34)
320 PF04097 Nic96: Nup93/Nic96; 79.0 76 0.0016 32.0 20.4 90 319-413 423-535 (613)
321 COG4455 ImpE Protein of avirul 78.6 19 0.00042 30.4 8.3 56 176-232 7-62 (273)
322 KOG4077 Cytochrome c oxidase, 78.3 20 0.00043 27.2 7.5 59 328-387 67-125 (149)
323 PRK15180 Vi polysaccharide bio 78.3 64 0.0014 30.8 12.4 123 212-338 296-419 (831)
324 COG4455 ImpE Protein of avirul 78.1 20 0.00044 30.2 8.3 77 277-354 3-81 (273)
325 COG5159 RPN6 26S proteasome re 77.5 50 0.0011 29.2 10.9 22 384-405 129-150 (421)
326 PRK09687 putative lyase; Provi 77.2 53 0.0012 29.2 26.2 223 167-409 34-263 (280)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 76.9 25 0.00054 25.3 9.4 43 225-267 27-69 (103)
328 PF13174 TPR_6: Tetratricopept 75.8 3.6 7.9E-05 22.2 2.6 26 384-409 4-29 (33)
329 TIGR03504 FimV_Cterm FimV C-te 75.5 8.7 0.00019 23.1 4.2 23 351-373 5-27 (44)
330 PF02259 FAT: FAT domain; Int 75.4 66 0.0014 29.4 22.1 64 240-303 146-212 (352)
331 PF13181 TPR_8: Tetratricopept 75.2 11 0.00023 20.6 4.5 27 207-233 3-29 (34)
332 COG3947 Response regulator con 74.9 61 0.0013 28.8 17.1 70 313-383 282-356 (361)
333 PF06552 TOM20_plant: Plant sp 74.8 45 0.00098 27.3 10.0 77 313-391 31-124 (186)
334 COG3947 Response regulator con 74.7 62 0.0013 28.8 10.8 69 278-347 282-355 (361)
335 TIGR03504 FimV_Cterm FimV C-te 74.5 8.7 0.00019 23.1 4.1 20 213-232 7-26 (44)
336 PF13181 TPR_8: Tetratricopept 74.4 11 0.00024 20.5 4.5 27 312-338 3-29 (34)
337 PF13762 MNE1: Mitochondrial s 74.3 40 0.00087 26.5 12.2 95 161-255 28-130 (145)
338 PF13762 MNE1: Mitochondrial s 73.7 42 0.00091 26.4 12.2 81 278-358 42-128 (145)
339 PF09477 Type_III_YscG: Bacter 73.0 32 0.00069 25.3 7.2 16 322-337 81-96 (116)
340 PF11846 DUF3366: Domain of un 73.0 18 0.00038 30.1 7.2 54 321-374 119-173 (193)
341 KOG2063 Vacuolar assembly/sort 72.9 1.3E+02 0.0028 31.6 16.2 38 215-252 601-638 (877)
342 PF11848 DUF3368: Domain of un 72.5 18 0.00039 22.2 5.2 33 356-388 13-45 (48)
343 COG2976 Uncharacterized protei 71.3 59 0.0013 27.0 14.3 128 241-375 55-189 (207)
344 PRK15180 Vi polysaccharide bio 70.7 1E+02 0.0022 29.5 14.1 124 177-304 296-420 (831)
345 KOG1258 mRNA processing protei 70.3 1.1E+02 0.0025 30.0 19.3 181 102-289 295-489 (577)
346 PF14689 SPOB_a: Sensor_kinase 70.0 13 0.00028 24.3 4.5 24 314-337 27-50 (62)
347 KOG4234 TPR repeat-containing 68.1 64 0.0014 27.0 8.8 94 283-381 103-202 (271)
348 KOG2063 Vacuolar assembly/sort 67.8 1.1E+02 0.0023 32.1 12.4 116 207-322 506-638 (877)
349 COG1747 Uncharacterized N-term 67.7 1.2E+02 0.0027 29.3 21.6 183 165-355 61-249 (711)
350 PF09986 DUF2225: Uncharacteri 66.9 79 0.0017 26.8 10.2 31 384-414 169-199 (214)
351 TIGR02561 HrpB1_HrpK type III 66.9 62 0.0013 25.6 12.5 11 290-300 59-69 (153)
352 COG0735 Fur Fe2+/Zn2+ uptake r 66.2 42 0.00091 26.4 7.5 60 334-394 10-69 (145)
353 KOG4077 Cytochrome c oxidase, 65.9 51 0.0011 25.2 7.2 44 260-303 69-112 (149)
354 PF10345 Cohesin_load: Cohesin 65.6 1.6E+02 0.0034 29.8 19.8 195 167-371 27-251 (608)
355 PF14669 Asp_Glu_race_2: Putat 65.5 78 0.0017 26.2 14.4 183 234-419 2-217 (233)
356 PF11846 DUF3366: Domain of un 65.4 39 0.00084 28.0 7.7 62 280-343 113-175 (193)
357 PF10579 Rapsyn_N: Rapsyn N-te 65.1 27 0.00058 24.1 5.2 46 287-332 18-65 (80)
358 PRK10564 maltose regulon perip 65.0 19 0.00042 32.0 5.8 29 279-307 261-289 (303)
359 KOG1258 mRNA processing protei 64.8 1.5E+02 0.0032 29.2 22.5 317 75-400 46-420 (577)
360 PF11848 DUF3368: Domain of un 64.4 30 0.00066 21.1 5.3 33 321-353 13-45 (48)
361 PF10579 Rapsyn_N: Rapsyn N-te 64.1 29 0.00062 24.0 5.2 46 357-402 18-65 (80)
362 KOG0687 26S proteasome regulat 64.0 1.1E+02 0.0025 27.6 15.0 111 276-388 105-224 (393)
363 COG2909 MalT ATP-dependent tra 63.1 2E+02 0.0042 30.0 24.6 229 180-408 425-687 (894)
364 COG0735 Fur Fe2+/Zn2+ uptake r 63.0 54 0.0012 25.8 7.6 62 192-254 8-69 (145)
365 PF12926 MOZART2: Mitotic-spin 62.8 51 0.0011 23.2 8.8 50 366-415 29-78 (88)
366 TIGR02508 type_III_yscG type I 62.8 57 0.0012 23.8 8.4 80 290-376 20-99 (115)
367 KOG2908 26S proteasome regulat 62.8 1.2E+02 0.0027 27.6 10.2 84 174-257 79-174 (380)
368 PF14689 SPOB_a: Sensor_kinase 62.6 28 0.0006 22.7 5.0 46 186-233 6-51 (62)
369 PF04097 Nic96: Nup93/Nic96; 61.2 1.9E+02 0.0041 29.2 13.9 64 169-234 111-181 (613)
370 KOG4648 Uncharacterized conser 61.0 58 0.0013 29.6 8.0 90 212-303 104-193 (536)
371 PF08311 Mad3_BUB1_I: Mad3/BUB 59.4 78 0.0017 24.2 9.5 58 346-405 66-124 (126)
372 KOG2066 Vacuolar assembly/sort 59.1 2.2E+02 0.0047 29.2 21.9 98 46-147 367-467 (846)
373 KOG1585 Protein required for f 58.7 1.2E+02 0.0027 26.3 17.4 204 138-368 34-250 (308)
374 PF04762 IKI3: IKI3 family; I 58.3 2.2E+02 0.0047 30.5 13.0 44 357-406 884-927 (928)
375 cd08819 CARD_MDA5_2 Caspase ac 58.1 64 0.0014 22.8 7.4 15 288-302 49-63 (88)
376 PRK10564 maltose regulon perip 58.0 22 0.00047 31.7 4.9 36 168-203 254-290 (303)
377 KOG1464 COP9 signalosome, subu 57.8 1.3E+02 0.0029 26.4 19.6 200 131-331 22-252 (440)
378 cd00280 TRFH Telomeric Repeat 57.1 98 0.0021 25.5 8.0 67 186-255 85-158 (200)
379 KOG2422 Uncharacterized conser 56.7 2.1E+02 0.0045 28.3 13.0 143 252-394 250-430 (665)
380 KOG0890 Protein kinase of the 56.6 4E+02 0.0086 31.5 23.3 284 113-411 1392-1733(2382)
381 PRK09462 fur ferric uptake reg 56.2 74 0.0016 25.0 7.5 62 300-362 7-69 (148)
382 PF11663 Toxin_YhaV: Toxin wit 56.1 14 0.00031 28.3 3.0 28 254-283 109-136 (140)
383 KOG4648 Uncharacterized conser 56.1 79 0.0017 28.8 8.0 81 177-267 104-185 (536)
384 PF10366 Vps39_1: Vacuolar sor 55.5 49 0.0011 24.5 5.9 26 348-373 42-67 (108)
385 COG5108 RPO41 Mitochondrial DN 55.3 93 0.002 31.1 8.9 90 245-337 33-130 (1117)
386 KOG2659 LisH motif-containing 55.2 1.3E+02 0.0029 25.6 9.8 97 272-370 23-128 (228)
387 PF10345 Cohesin_load: Cohesin 55.2 2.4E+02 0.0052 28.5 29.2 306 102-408 57-481 (608)
388 COG4785 NlpI Lipoprotein NlpI, 55.0 1.3E+02 0.0029 25.6 16.7 160 170-340 99-267 (297)
389 PF09477 Type_III_YscG: Bacter 55.0 84 0.0018 23.2 8.6 80 289-375 20-99 (116)
390 PRK11639 zinc uptake transcrip 54.9 87 0.0019 25.4 7.7 64 299-363 15-78 (169)
391 PF10475 DUF2450: Protein of u 54.7 1.1E+02 0.0025 27.3 9.2 87 274-365 126-217 (291)
392 smart00028 TPR Tetratricopepti 54.7 27 0.0006 17.5 4.0 22 315-336 6-27 (34)
393 PF07575 Nucleopor_Nup85: Nup8 54.5 37 0.0008 33.8 6.6 61 204-266 404-464 (566)
394 PF06552 TOM20_plant: Plant sp 54.0 1.2E+02 0.0027 24.8 10.6 41 292-340 97-137 (186)
395 KOG4234 TPR repeat-containing 53.6 1.3E+02 0.0029 25.2 9.9 92 178-270 103-198 (271)
396 PF04910 Tcf25: Transcriptiona 53.3 1.9E+02 0.0042 26.9 14.4 29 274-302 39-67 (360)
397 PF09454 Vps23_core: Vps23 cor 51.7 36 0.00077 22.5 4.0 51 342-393 5-55 (65)
398 KOG0686 COP9 signalosome, subu 51.0 2.2E+02 0.0047 26.8 15.2 180 170-353 150-352 (466)
399 KOG2908 26S proteasome regulat 51.0 2E+02 0.0043 26.3 10.6 80 277-356 77-167 (380)
400 cd08819 CARD_MDA5_2 Caspase ac 50.5 88 0.0019 22.1 7.4 13 219-231 50-62 (88)
401 KOG0991 Replication factor C, 50.3 1.7E+02 0.0036 25.3 15.0 126 107-237 133-270 (333)
402 PF10366 Vps39_1: Vacuolar sor 49.9 1E+02 0.0022 22.8 7.5 26 173-198 42-67 (108)
403 KOG4507 Uncharacterized conser 49.1 1.4E+02 0.0031 29.5 8.9 104 181-286 618-721 (886)
404 PF11663 Toxin_YhaV: Toxin wit 48.8 19 0.00041 27.7 2.7 29 324-354 109-137 (140)
405 PF02847 MA3: MA3 domain; Int 48.6 79 0.0017 23.3 6.3 23 280-302 7-29 (113)
406 KOG2297 Predicted translation 48.0 2.1E+02 0.0046 25.8 15.9 67 288-363 268-339 (412)
407 KOG2066 Vacuolar assembly/sort 47.6 3.3E+02 0.0073 28.0 22.5 124 105-232 393-532 (846)
408 PF11817 Foie-gras_1: Foie gra 47.2 1.4E+02 0.0031 25.9 8.4 22 381-402 219-240 (247)
409 PF11817 Foie-gras_1: Foie gra 46.6 1.3E+02 0.0027 26.2 8.0 60 313-372 181-245 (247)
410 PF04762 IKI3: IKI3 family; I 46.4 2.8E+02 0.0061 29.7 11.7 205 109-335 699-926 (928)
411 PRK09857 putative transposase; 46.4 2.2E+02 0.0048 25.6 10.5 17 252-268 218-234 (292)
412 PF07575 Nucleopor_Nup85: Nup8 46.3 51 0.0011 32.8 6.2 26 134-159 404-429 (566)
413 COG2909 MalT ATP-dependent tra 45.8 3.8E+02 0.0082 28.1 22.6 298 110-413 290-651 (894)
414 KOG0890 Protein kinase of the 45.6 5.9E+02 0.013 30.2 20.2 63 309-374 1669-1731(2382)
415 KOG4567 GTPase-activating prot 45.0 1.5E+02 0.0033 26.6 7.9 72 225-301 263-344 (370)
416 COG5108 RPO41 Mitochondrial DN 45.0 1.6E+02 0.0034 29.6 8.7 90 210-302 33-130 (1117)
417 PHA03100 ankyrin repeat protei 44.9 1.7E+02 0.0037 28.3 9.5 17 115-131 43-59 (480)
418 PF03745 DUF309: Domain of unk 43.4 92 0.002 20.3 5.2 46 182-227 11-61 (62)
419 smart00777 Mad3_BUB1_I Mad3/BU 43.3 1.5E+02 0.0032 22.7 9.8 43 362-404 80-123 (125)
420 PF02847 MA3: MA3 domain; Int 42.4 1.4E+02 0.0029 22.0 7.0 21 246-266 8-28 (113)
421 COG2976 Uncharacterized protei 42.2 2E+02 0.0044 24.0 15.0 132 205-340 54-189 (207)
422 PRK11639 zinc uptake transcrip 42.1 1.5E+02 0.0032 24.1 7.2 58 197-255 18-75 (169)
423 PF09670 Cas_Cas02710: CRISPR- 42.1 3E+02 0.0065 25.8 11.7 57 177-234 138-198 (379)
424 cd07153 Fur_like Ferric uptake 42.0 71 0.0015 23.7 5.1 49 315-363 5-53 (116)
425 PRK09857 putative transposase; 41.6 2.6E+02 0.0057 25.1 9.3 58 321-379 217-274 (292)
426 cd00280 TRFH Telomeric Repeat 41.3 2E+02 0.0044 23.7 8.0 66 291-359 85-157 (200)
427 PF09868 DUF2095: Uncharacteri 39.1 1.5E+02 0.0032 22.1 5.8 25 281-305 67-91 (128)
428 PF01475 FUR: Ferric uptake re 38.9 67 0.0015 24.1 4.5 44 351-394 13-56 (120)
429 KOG1114 Tripeptidyl peptidase 38.4 5.2E+02 0.011 27.5 16.7 81 326-407 1212-1293(1304)
430 PF14853 Fis1_TPR_C: Fis1 C-te 38.4 1E+02 0.0022 19.4 5.4 21 318-338 9-29 (53)
431 PRK12356 glutaminase; Reviewed 38.4 3.1E+02 0.0067 25.0 12.0 158 233-406 91-257 (319)
432 PF09670 Cas_Cas02710: CRISPR- 38.1 3.4E+02 0.0075 25.4 12.5 57 212-269 138-198 (379)
433 PF12926 MOZART2: Mitotic-spin 38.1 1.4E+02 0.0031 21.0 8.0 40 227-266 30-69 (88)
434 PF13934 ELYS: Nuclear pore co 37.8 2.6E+02 0.0057 23.9 10.9 20 211-230 114-133 (226)
435 PF01726 LexA_DNA_bind: LexA D 37.8 80 0.0017 20.8 4.1 52 364-419 11-63 (65)
436 KOG4567 GTPase-activating prot 37.7 3.1E+02 0.0067 24.8 9.3 88 260-356 263-360 (370)
437 PF09454 Vps23_core: Vps23 cor 37.5 99 0.0021 20.4 4.5 49 308-357 6-54 (65)
438 PHA03100 ankyrin repeat protei 37.3 1.8E+02 0.0039 28.0 8.4 144 140-298 37-196 (480)
439 PRK14700 recombination factor 37.2 3.1E+02 0.0068 24.7 9.9 93 211-303 129-229 (300)
440 cd07153 Fur_like Ferric uptake 37.0 92 0.002 23.1 5.0 48 280-327 5-52 (116)
441 KOG4507 Uncharacterized conser 37.0 1.9E+02 0.004 28.7 7.8 129 121-251 590-721 (886)
442 KOG3807 Predicted membrane pro 36.2 3.4E+02 0.0074 24.8 12.8 57 279-337 279-338 (556)
443 COG4003 Uncharacterized protei 34.9 65 0.0014 22.2 3.3 30 385-414 36-65 (98)
444 PF01475 FUR: Ferric uptake re 34.4 1.1E+02 0.0024 22.9 5.1 20 256-275 23-42 (120)
445 PRK13342 recombination factor 34.3 4.1E+02 0.0089 25.2 19.2 21 324-344 244-264 (413)
446 TIGR01228 hutU urocanate hydra 34.1 4E+02 0.0087 25.8 9.3 68 218-298 207-279 (545)
447 KOG4642 Chaperone-dependent E3 32.8 3.3E+02 0.0072 23.7 11.0 15 322-336 90-104 (284)
448 PRK09462 fur ferric uptake reg 32.8 2.4E+02 0.0053 22.1 7.9 12 258-269 35-46 (148)
449 TIGR03581 EF_0839 conserved hy 32.7 1.3E+02 0.0029 25.3 5.4 13 277-289 165-177 (236)
450 PF12862 Apc5: Anaphase-promot 32.0 1.9E+02 0.0041 20.5 8.1 17 356-372 52-68 (94)
451 PF11838 ERAP1_C: ERAP1-like C 32.0 3.8E+02 0.0082 24.1 22.0 146 256-407 146-306 (324)
452 smart00544 MA3 Domain in DAP-5 31.7 2.1E+02 0.0045 21.0 10.6 23 280-302 7-29 (113)
453 PF07678 A2M_comp: A-macroglob 30.4 3.6E+02 0.0078 23.3 9.1 23 352-374 199-221 (246)
454 COG5187 RPN7 26S proteasome re 30.4 4E+02 0.0087 23.9 14.3 154 257-423 55-227 (412)
455 PF12862 Apc5: Anaphase-promot 30.0 2E+02 0.0044 20.3 7.8 21 318-338 49-69 (94)
456 KOG1464 COP9 signalosome, subu 29.9 4E+02 0.0086 23.6 16.8 140 163-302 19-172 (440)
457 PF08424 NRDE-2: NRDE-2, neces 29.5 4.4E+02 0.0094 24.0 17.5 98 237-336 16-128 (321)
458 PF05944 Phage_term_smal: Phag 29.4 2.7E+02 0.0058 21.6 8.2 30 173-202 51-80 (132)
459 PHA02989 ankyrin repeat protei 29.4 5.4E+02 0.012 25.0 10.7 19 117-135 13-31 (494)
460 KOG2223 Uncharacterized conser 29.3 4.9E+02 0.011 24.8 8.8 82 185-270 415-504 (586)
461 PF08424 NRDE-2: NRDE-2, neces 29.1 4.4E+02 0.0096 24.0 18.0 97 204-302 18-129 (321)
462 PHA02878 ankyrin repeat protei 28.7 83 0.0018 30.5 4.4 105 157-274 149-262 (477)
463 COG2137 OraA Uncharacterized p 28.5 3.3E+02 0.0071 22.3 13.1 73 189-265 54-126 (174)
464 COG0790 FOG: TPR repeat, SEL1 28.1 4.2E+02 0.0091 23.4 25.4 150 183-341 54-222 (292)
465 PLN03192 Voltage-dependent pot 27.8 2.7E+02 0.0059 29.4 8.3 18 281-298 625-642 (823)
466 KOG2396 HAT (Half-A-TPR) repea 27.4 5.9E+02 0.013 24.9 22.1 94 307-403 456-553 (568)
467 PRK08691 DNA polymerase III su 27.4 7E+02 0.015 25.7 11.2 88 222-312 182-282 (709)
468 smart00386 HAT HAT (Half-A-TPR 27.3 1E+02 0.0022 15.9 3.9 27 360-387 2-28 (33)
469 cd08326 CARD_CASP9 Caspase act 27.0 2.2E+02 0.0049 19.9 7.5 37 287-327 42-78 (84)
470 PF09090 MIF4G_like_2: MIF4G l 26.7 4.3E+02 0.0094 23.1 9.2 115 272-386 8-133 (253)
471 PF10255 Paf67: RNA polymerase 26.3 3.3E+02 0.0071 25.8 7.5 23 313-335 167-189 (404)
472 KOG1811 Predicted Zn2+-binding 26.1 6.8E+02 0.015 25.1 14.2 34 200-234 583-616 (1141)
473 KOG3364 Membrane protein invol 26.1 3.2E+02 0.007 21.4 8.8 65 308-373 30-99 (149)
474 KOG0292 Vesicle coat complex C 25.9 2.5E+02 0.0055 29.3 7.0 147 218-405 606-752 (1202)
475 PF10155 DUF2363: Uncharacteri 25.9 3.1E+02 0.0066 21.0 13.5 94 313-407 21-125 (126)
476 PF00244 14-3-3: 14-3-3 protei 25.8 4.4E+02 0.0095 22.8 9.6 58 176-233 7-65 (236)
477 TIGR03581 EF_0839 conserved hy 25.3 1.9E+02 0.0042 24.5 5.2 81 290-370 136-233 (236)
478 KOG3364 Membrane protein invol 25.1 3.4E+02 0.0073 21.3 8.8 23 316-338 77-99 (149)
479 PF10255 Paf67: RNA polymerase 24.8 2.3E+02 0.0049 26.8 6.2 60 173-232 125-191 (404)
480 PHA02798 ankyrin-like protein; 24.6 5.1E+02 0.011 25.2 9.1 16 224-239 88-103 (489)
481 KOG4279 Serine/threonine prote 24.5 8.1E+02 0.018 25.5 11.6 119 222-345 180-320 (1226)
482 COG2405 Predicted nucleic acid 24.4 1.7E+02 0.0037 22.8 4.4 43 347-390 112-154 (157)
483 PF02184 HAT: HAT (Half-A-TPR) 24.3 1.4E+02 0.003 16.6 3.4 13 326-338 3-15 (32)
484 PHA02798 ankyrin-like protein; 24.2 5.6E+02 0.012 24.9 9.3 151 156-310 52-214 (489)
485 COG4003 Uncharacterized protei 24.1 2.5E+02 0.0055 19.5 5.4 24 282-305 38-61 (98)
486 PRK13342 recombination factor 23.6 6.4E+02 0.014 23.9 20.0 136 187-341 154-301 (413)
487 PF09868 DUF2095: Uncharacteri 23.4 3.2E+02 0.007 20.4 5.9 21 215-235 71-91 (128)
488 KOG1498 26S proteasome regulat 23.4 6.3E+02 0.014 23.8 15.7 101 314-414 135-246 (439)
489 KOG0376 Serine-threonine phosp 23.3 2.1E+02 0.0045 27.5 5.6 103 213-320 12-115 (476)
490 KOG2300 Uncharacterized conser 22.9 7.2E+02 0.016 24.3 18.5 151 216-370 334-510 (629)
491 PF04124 Dor1: Dor1-like famil 22.7 6E+02 0.013 23.3 8.7 26 278-303 109-134 (338)
492 PF04910 Tcf25: Transcriptiona 22.6 6.3E+02 0.014 23.5 19.0 58 281-338 109-167 (360)
493 PHA02878 ankyrin repeat protei 22.3 7.1E+02 0.015 24.0 12.0 13 192-204 149-161 (477)
494 PF11768 DUF3312: Protein of u 22.1 7.8E+02 0.017 24.4 10.9 21 211-231 414-434 (545)
495 PRK14958 DNA polymerase III su 21.9 7.7E+02 0.017 24.3 13.1 37 196-234 191-227 (509)
496 PF13934 ELYS: Nuclear pore co 21.8 5.1E+02 0.011 22.2 14.9 106 243-359 79-186 (226)
497 KOG0989 Replication factor C, 21.4 6.3E+02 0.014 23.0 10.2 45 191-237 196-240 (346)
498 PF11768 DUF3312: Protein of u 21.4 8E+02 0.017 24.3 10.9 23 108-130 412-434 (545)
499 KOG0687 26S proteasome regulat 21.3 6.4E+02 0.014 23.1 16.7 191 200-394 65-270 (393)
500 smart00804 TAP_C C-terminal do 21.3 91 0.002 20.5 2.1 20 395-414 40-59 (63)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-58 Score=466.70 Aligned_cols=367 Identities=17% Similarity=0.184 Sum_probs=306.3
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH-HHHHhcCChhhhh----hhHHHHHHHHhccCCCCCH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ-KQAISQFPRKMTK----RCKAFVKQIICVSPETGNL 120 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~ 120 (423)
++.|+++.|..+ |++|.+.|+.|+. .+||+++.+|++.+ .+.|.++|++|.+ +|..+|+.+|.+|++.|++
T Consensus 448 ~k~g~~e~A~~l--f~~M~~~Gl~pD~--~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 448 ASSQDIDGALRV--LRLVQEAGLKADC--KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HhCcCHHHHHHH--HHHHHHcCCCCCH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 667788888777 8888888888876 88888888888644 4888888888874 6888888888888888888
Q ss_pred HHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh--cccCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 014507 121 SDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLE--ESFEANIRDYTKIIHGYGKKMQIQNAENTLL 194 (423)
Q Consensus 121 ~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 194 (423)
++|+++|++| +.||..+|+.++.+|++.|+.+.|..++..|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888887 568888888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 014507 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG 274 (423)
Q Consensus 195 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 274 (423)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA 354 (423)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 354 (423)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----HcC-------------------CHHHHHHHHHHhcccCC
Q 014507 355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK----RLG-------------------VVEEVEHVLREYGLRET 411 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~~ 411 (423)
|++.|++++|.+++++|.+.|+.||..+|++++..|. +++ ..++|..+|++|.+.++
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 8888888888888888888888888888888876543 221 23568888888888888
Q ss_pred cCCCC
Q 014507 412 YSKIP 416 (423)
Q Consensus 412 ~~~~~ 416 (423)
.|+..
T Consensus 844 ~Pd~~ 848 (1060)
T PLN03218 844 LPTME 848 (1060)
T ss_pred CCCHH
Confidence 77643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-58 Score=464.46 Aligned_cols=368 Identities=16% Similarity=0.181 Sum_probs=236.5
Q ss_pred hhhcCchhhHhhhhhcccccccccC-CC-----------------------------cceeeeeeccccch-HHHHHHhc
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKD-DT-----------------------------SMFTWIQIGPNITE-EQKQAISQ 94 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~-~~-----------------------------~~~~~~~l~~~~~~-~~~~~a~~ 94 (423)
++.|++++|+.+ |++|.+.|+.+ +. +..+|+.++.+|++ +..+.|..
T Consensus 381 ~r~G~l~eAl~L--fd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 381 LRDGRIKDCIDL--LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHCcCHHHHHHH--HHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 677899999888 99999888642 21 22555566665554 33355666
Q ss_pred CChhhhh----hhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc
Q 014507 95 FPRKMTK----RCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESF 166 (423)
Q Consensus 95 ~~~~m~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 166 (423)
+|++|.+ +|..+|+.+|.+|++.|+++.|.++|++| +.||..+|+.+|.+|++.|+.++|..++..|.+.|+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 6666653 45566666666666666666666666665 246666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKR--RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG 244 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 244 (423)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 66666666666666666666666666666654 4556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG 324 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (423)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhcccCCcCCC
Q 014507 405 EYGLRETYSKI 415 (423)
Q Consensus 405 ~m~~~~~~~~~ 415 (423)
+|.+.++.++.
T Consensus 779 ~M~k~Gi~pd~ 789 (1060)
T PLN03218 779 QAKEDGIKPNL 789 (1060)
T ss_pred HHHHcCCCCCH
Confidence 66666655543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.6e-56 Score=442.45 Aligned_cols=338 Identities=17% Similarity=0.194 Sum_probs=273.4
Q ss_pred hcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCC
Q 014507 60 AEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPR 134 (423)
Q Consensus 60 ~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~ 134 (423)
+.+|.+.|+.|+. .+||.++.+|++ +..+.|.++|++|+++|.++||.+|.+|++.|++++|+++|++| ..||
T Consensus 146 ~~~m~~~g~~~~~--~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 146 YWHVESSGFEPDQ--YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHHHhCCCcch--HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 4444444444433 444444444443 22244555555555555555555555555555555555555544 3344
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM 214 (423)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 214 (423)
..+|+.++.+|+..|....+.+++..+.+.|+.||..+|+++|++|+++|++++|.++|++|.+. |..+||++|.+
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~ 299 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAG 299 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHH
Confidence 45555555555555555555555555555566667777788999999999999999999999754 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA 294 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 294 (423)
|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|+.||++|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 014507 295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER- 373 (423)
Q Consensus 295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 373 (423)
.++|++|. .||..+||+||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+
T Consensus 380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999997 5899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 374 DGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 374 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
.|+.|+..+|+.++++|++.|++++|.+++++|.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 5999999999999999999999999999999885
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9e-55 Score=435.10 Aligned_cols=364 Identities=17% Similarity=0.191 Sum_probs=318.5
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh----hhHHHHHHHHhccCCCCCH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK----RCKAFVKQIICVSPETGNL 120 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~ 120 (423)
++.|++++|+.+ |++|.+.|..|+. .+|+.++.++++ +..+.+.+++..+.+ +|..+|+.||++|++.|++
T Consensus 200 ~~~g~~~~A~~l--f~~M~~~g~~p~~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 200 VDAGNYREAFAL--FREMWEDGSDAEP--RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHCcCHHHHHHH--HHHHHHhCCCCCh--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 344444444444 4444444444433 444444444442 112333333333332 4667889999999999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 014507 121 SDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG 200 (423)
Q Consensus 121 ~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 200 (423)
++|.++|++|..+|..+|+.++.+|++.|+.++|..++..|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
+.||..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999996 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 359 (423)
++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|+.|+.+|...|
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999986 699999999999999999999999999999876 47899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCcccccC
Q 014507 360 QLNRALEFLIDLERDGFMV-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL 423 (423)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 423 (423)
+++.|..+++++.+ +.| +..+|..|++.|++.|++++|.+++++|+++++ .+.||+||+++
T Consensus 509 ~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~-~k~~g~s~i~~ 570 (697)
T PLN03081 509 NLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL-SMHPACTWIEV 570 (697)
T ss_pred CcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC-ccCCCeeEEEE
Confidence 99999999999875 445 578999999999999999999999999999887 57799999874
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.8e-54 Score=438.06 Aligned_cols=356 Identities=18% Similarity=0.189 Sum_probs=320.8
Q ss_pred hhhcCchhhHhhhhhcccccccccCCC---------------------------------cceeeeeeccccchH-HHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDT---------------------------------SMFTWIQIGPNITEE-QKQA 91 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~---------------------------------~~~~~~~l~~~~~~~-~~~~ 91 (423)
++.|++++|+.+ |++|.+.|+.|+. +.++||+++.+|++. +.+.
T Consensus 163 ~~~g~~~~A~~~--f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 163 AKAGYFDEALCL--YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HhCCCHHHHHHH--HHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 778889999888 8998888888764 124556677777754 4488
Q ss_pred HhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC
Q 014507 92 ISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE 167 (423)
Q Consensus 92 a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (423)
|..+|++|+++|.++||.+|.+|++.|++++|+++|.+| +.||..||+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999998 6899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV 247 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 247 (423)
||..+||.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 9999999999999999999999999999875 488899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------------
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG---------------------- 305 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------- 305 (423)
.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|++.|++++|.++|++|.+.+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999888888888888888888888888877664321
Q ss_pred --------C-----------------------------------------------------------------CCCHHH
Q 014507 306 --------I-----------------------------------------------------------------TPDARM 312 (423)
Q Consensus 306 --------~-----------------------------------------------------------------~p~~~~ 312 (423)
+ .||..+
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 1 456677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE-RDGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~l~~~~~ 391 (423)
||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999 5699999999999999999
Q ss_pred HcCCHHHHHHHHHHhc
Q 014507 392 RLGVVEEVEHVLREYG 407 (423)
Q Consensus 392 ~~g~~~~A~~~~~~m~ 407 (423)
+.|++++|.+++++|+
T Consensus 637 r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 637 RAGKLTEAYNFINKMP 652 (857)
T ss_pred hCCCHHHHHHHHHHCC
Confidence 9999999999999995
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-53 Score=433.89 Aligned_cols=358 Identities=18% Similarity=0.177 Sum_probs=336.7
Q ss_pred hhhhcCchhhHhhhhhcccccccccCCCc---------------------------------ceeeeeeccccchHH-HH
Q 014507 45 WSRSLRSGPALEAIKAEDMGKTQVKDDTS---------------------------------MFTWIQIGPNITEEQ-KQ 90 (423)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~---------------------------------~~~~~~l~~~~~~~~-~~ 90 (423)
+++.|++++|+.+ |++|.+.|+.|+.. ...+|+++..|++.+ .+
T Consensus 61 l~~~g~~~~A~~l--~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 61 LCSHGQLEQALKL--LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV 138 (857)
T ss_pred HHhCCCHHHHHHH--HHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChH
Confidence 3888999999988 99999988777651 123466666667543 48
Q ss_pred HHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc
Q 014507 91 AISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESF 166 (423)
Q Consensus 91 ~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 166 (423)
.|..+|++|+++|+.+||.+|.+|++.|++++|+++|++| +.||..||+.++++|+..++...+.+++..+.+.|+
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999998 679999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
.||..+||.+|.+|+++|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 99999999999999999999999999999975 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
+.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999997 68999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|+++|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCc
Q 014507 407 GLRETY 412 (423)
Q Consensus 407 ~~~~~~ 412 (423)
.+.+.+
T Consensus 451 ~~~d~v 456 (857)
T PLN03077 451 PEKDVI 456 (857)
T ss_pred CCCCee
Confidence 987654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=7.5e-21 Score=197.76 Aligned_cols=309 Identities=10% Similarity=0.034 Sum_probs=191.4
Q ss_pred HHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 014507 90 QAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLE 163 (423)
Q Consensus 90 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 163 (423)
+.+..+++++.+ .+...|..+...+.+.|++++|++.|+++. .| +...+..+...+...|+.+.|...+..+.+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444432 234455555555556666666666665542 22 234455555555556666666555555544
Q ss_pred cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 164 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
.. +.+...+..+...+...|++++|.++++.+.+.+. .+...+..+...+.+.|++++|.+.|+++...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 32 23455556666666666666666666666655532 245555666666666666666666666666543 333555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA 323 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 323 (423)
..+..++.+.|++++|.+.++++.+... .+...+..+...|.+.|+.++|.++|+++.+.. +.+...++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5566666666666666666666665533 256666666777777777777777777776553 34566677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 324 GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
|+ .+|++.+++..+.. +-+..++..+...+...|++++|.+.++++.+.+. .+..++..+..++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77 66777777766532 12345566677777778888888888888877653 37777778888888888888888888
Q ss_pred HHhc
Q 014507 404 REYG 407 (423)
Q Consensus 404 ~~m~ 407 (423)
++|.
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 8775
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.4e-20 Score=193.97 Aligned_cols=351 Identities=15% Similarity=0.045 Sum_probs=211.9
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~ 121 (423)
+..|++++|+.. ++++.+. .|+. ..+|+.+...+.. ++.+.|...|+++.+ .+...+..+...+...|+++
T Consensus 442 ~~~~~~~~A~~~--~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 442 LRSGQFDKALAA--AKKLEKK--QPDN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HhcCCHHHHHHH--HHHHHHh--CCCC-cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 455566666555 5554432 2221 1344555554443 334556666655533 23344555556666666666
Q ss_pred HHHHHHHHhc--C-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 014507 122 DLLAAWVRFM--K-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKR 198 (423)
Q Consensus 122 ~a~~~~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 198 (423)
+|.+.|+++. . .+..++..+...+.+.|+.+++...+..+...+ +.+...+..++..+.+.|++++|..+++.+.+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666652 2 233555566666666666666666666555443 33445555666666666666666666666665
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 014507 199 RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY 278 (423)
Q Consensus 199 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 278 (423)
.. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++++.+.... +..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 42 3355666666677777777777777776666543 334556666666666677777777777666654322 45566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE 358 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 358 (423)
..+...+...|++++|.++++.+...+ +++...+..+...+...|++++|.+.|+.+.+. .|+..++..+...+.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHC
Confidence 666666666677777777766666553 335556666666667777777777777766653 24445566666666677
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 359 NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 359 g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
|++++|.+.++++.+. .+.+...+..+...|.+.|++++|.++|+++.+.
T Consensus 750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 7777777777666654 2345666666777777777777777777766543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3e-20 Score=174.64 Aligned_cols=296 Identities=15% Similarity=0.114 Sum_probs=246.8
Q ss_pred ccCCCCCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCC---HHHHHHHHHHHHccCCH
Q 014507 113 VSPETGNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEAN---IRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 113 ~~~~~g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 186 (423)
.+...|++++|++.|.++. .|+. .++..+...+...|+++.|..+++.+...+..++ ...+..+...+.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4457899999999999984 4543 5788888899999999999999998887543222 35678889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHH
Q 014507 187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK----RSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~ 262 (423)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998863 346788999999999999999999999999886533322 2456677888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
|+++.+.... +...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|.+.++++.+. .
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9999886532 566888899999999999999999999987532223467889999999999999999999999885 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHHhcccCCcCC
Q 014507 343 PSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR---LGVVEEVEHVLREYGLRETYSK 414 (423)
Q Consensus 343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~ 414 (423)
|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.++.+.++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 77777788999999999999999999998875 5888899988888775 5689999999999998777555
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=9.4e-20 Score=171.31 Aligned_cols=289 Identities=13% Similarity=0.075 Sum_probs=241.3
Q ss_pred HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhcC-CC------hhhHHHHHHHHHhcCCchHHHH
Q 014507 87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFMK-PR------RADWLAVLKQLKLMEHPLYLQV 156 (423)
Q Consensus 87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-p~------~~~~~~ll~~~~~~~~~~~a~~ 156 (423)
++.+.|...|+++.+ .+..+|..+...+...|++++|++.++.+.. |+ ...+..+...+...|+++.|..
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 445667777877765 2445788888999999999999999998743 32 1457788889999999999999
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 157 AELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ----VTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
++..+.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.
T Consensus 129 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999988753 457788999999999999999999999999887644322 245667788899999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM 312 (423)
Q Consensus 233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 312 (423)
+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|.+.++.+.+. .|+...
T Consensus 208 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~ 284 (389)
T PRK11788 208 AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADL 284 (389)
T ss_pred hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchH
Confidence 864 34567888899999999999999999999998654433567889999999999999999999999876 567677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK---ENQLNRALEFLIDLERDGFMVGKE 381 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 381 (423)
+..++..+.+.|++++|.++++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 789999999999999999999998874 6999899988887764 558999999999999887777765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=9.5e-16 Score=151.83 Aligned_cols=318 Identities=13% Similarity=0.014 Sum_probs=165.3
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSD 122 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~ 122 (423)
.++|+++.|+.+ ++..... .|+.+...++..+.....++.+.|...++++.+ .+...|..+...+.+.|++++
T Consensus 53 ~~~g~~~~A~~l--~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 53 LRKDETDVGLTL--LSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HhcCCcchhHHH--hHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 556666666666 5544432 233222333333333334444555555555543 233445555555566666666
Q ss_pred HHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507 123 LLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR 199 (423)
Q Consensus 123 a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 199 (423)
|++.+++. ..|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|...++.+.+.
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665 2233 2445555555666666666665555444433222 2222222 2345556666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhCCCCCCH
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR----GEVLLREMDAQEVYVGS 275 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~ 275 (423)
...++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++ |...|++..+.... +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CH
Confidence 322333334444555556666666666666665543 2345555556666666666554 55666665554322 44
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-CVALILSA 354 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~ 354 (423)
..+..+...+.+.|++++|...+++..... +.+...+..+..++.+.|++++|.+.++.+.+. .|+.. .+..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 556666666666666666666666655532 123444555556666666666666666665543 23322 22223445
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 014507 355 CEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~ 374 (423)
+...|+.++|...|++..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 55666666666666665543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=7.7e-16 Score=152.49 Aligned_cols=315 Identities=13% Similarity=0.063 Sum_probs=252.4
Q ss_pred hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHH
Q 014507 86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAEL 159 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 159 (423)
.+..+.|..+++.... .+...+..+..+....|+++.|++.+++. ..|+. ..+..+...+...|+.+.|...+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455667777766643 34455666667777899999999999998 45654 567778888899999999999999
Q ss_pred HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507 160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239 (423)
Q Consensus 160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 239 (423)
..++.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++
T Consensus 135 ~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 135 QAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 887763 446778889999999999999999999988776444 33344333 347889999999999999887643345
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCHHHHHH
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG----AQRVFEAIQFAGITPDARMCAL 315 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ 315 (423)
...+..+..++...|++++|...+++..+.... +...+..+...+...|++++ |...|++..... +.+...+..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~ 289 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTL 289 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 556666778899999999999999999987643 67788889999999999986 899999988753 336778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHHc
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGK-EASCTLAAWFKRL 393 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~ 393 (423)
+...+...|++++|...+++..+. .|+ ...+..+...+.+.|++++|...++++.+. .|+. ..+..+..++...
T Consensus 290 lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHC
Confidence 999999999999999999999874 454 567778889999999999999999999875 3443 3444567788999
Q ss_pred CCHHHHHHHHHHhccc
Q 014507 394 GVVEEVEHVLREYGLR 409 (423)
Q Consensus 394 g~~~~A~~~~~~m~~~ 409 (423)
|+.++|.+.|++..+.
T Consensus 366 G~~deA~~~l~~al~~ 381 (656)
T PRK15174 366 GKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.7e-15 Score=148.81 Aligned_cols=352 Identities=13% Similarity=-0.036 Sum_probs=261.6
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~ 121 (423)
...|++++|+.. |++.++ +.|+. ..|..+..+|.+ ++++.|...+++..+ .+...|..+..++...|+++
T Consensus 138 ~~~~~~~~Ai~~--y~~al~--~~p~~--~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 138 YRNKDFNKAIKL--YSKAIE--CKPDP--VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHcCCHHHHHHH--HHHHHh--cCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 677899999999 888664 56664 455556566664 555777777776654 35567888888999999999
Q ss_pred HHHHHHHHhc--------------------------------CCCh-hhHHHHHHHH-----------------------
Q 014507 122 DLLAAWVRFM--------------------------------KPRR-ADWLAVLKQL----------------------- 145 (423)
Q Consensus 122 ~a~~~~~~~~--------------------------------~p~~-~~~~~ll~~~----------------------- 145 (423)
+|+.-|.... .|.. ..+..+...+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 9987654321 0100 0000000000
Q ss_pred -------------HhcCCchHHHHHHHHHhhcc-c-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 146 -------------KLMEHPLYLQVAELALLEES-F-EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV 210 (423)
Q Consensus 146 -------------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 210 (423)
...+++++|...+...++.+ . +.+...|+.+...+...|++++|+..+++..+.... +...|..
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~ 370 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIK 370 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 01235566677777766654 2 334567888888999999999999999999887432 4668888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+..+...+.+.|+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998864 446788999999999999999999999999987543 67788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C---CH-HHHHHHHHHHHHcCCHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE--P---SD-KCVALILSACEKENQLNRA 364 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p---~~-~~~~~li~~~~~~g~~~~a 364 (423)
+++|+..|+...... +.+...|+.+..++...|++++|.+.|++..+..-. + +. ..++.....+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999988652 336788999999999999999999999998874211 1 11 1122222233446999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 365 LEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 365 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus 528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999988753 23455788999999999999999999988643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=2.4e-16 Score=144.10 Aligned_cols=282 Identities=12% Similarity=0.079 Sum_probs=182.2
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhcCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRFMKPRR---ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK 182 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 182 (423)
.|..|-..+-..|+...|+..|++.++.|. .+|-.|...+...+.++.|...+...+... +-....|..+...|-.
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE 298 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence 455566666666777777777777644333 567777777777777777766655443321 2234556666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
.|++|.|+..+++..+.... =...|+.|..++-..|+..+|.+.|++..... +.-....+.|...|...|.++.|..+
T Consensus 299 qG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence 77777777777777665322 24567777777777777777777777776653 33455666777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
|....+-... -...++.|...|-+.|++++|...+++... +.|+ ...|+.+-..|-..|+.+.|...+.+.+. +
T Consensus 377 y~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~ 451 (966)
T KOG4626|consen 377 YLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--I 451 (966)
T ss_pred HHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--c
Confidence 7776664222 244667777777777777777777777665 3553 45677777777777777777777777665 4
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHH
Q 014507 342 EPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 342 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~ 397 (423)
.|. ...++.|...|-.+|++.+|+.-+++..+ ++|| +..|..++.++.--.+|.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 454 45677777777777777777777777666 3454 445555665554433333
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2e-14 Score=126.29 Aligned_cols=309 Identities=11% Similarity=0.085 Sum_probs=222.3
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKII 177 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 177 (423)
++-.+|.+||.++++-...++|.+++.+. .+.+..+||.++.+-.-... +.+..+|......||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 34468888999888888889999988875 66788888888877654333 66777888888899999999999
Q ss_pred HHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--C--CCC----CHHHHH
Q 014507 178 HGYGKKMQIQN----AENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM-AEETFEEIKLL--G--EPL----DKRSYG 244 (423)
Q Consensus 178 ~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~~----~~~~~~ 244 (423)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++... | ++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999987764 46778888888999999999999888888887644 45555555431 2 222 345577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQE----VYVG---SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLI 317 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 317 (423)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 78888888888888888776665421 2333 2245667777888888888888888888776778888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------------------HHHHHHHHHHHHCCC
Q 014507 318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN-QL--------------------NRALEFLIDLERDGF 376 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~m~~~g~ 376 (423)
++....|+++-.-++|.+++..|...+...-.-++..+++.. .. +....--.+|.+ .
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~ 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--Q 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--c
Confidence 999999999999999999988774444433333444444332 10 111111112232 3
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHh-cccCCcCCCC
Q 014507 377 MVGKEASCTLAAWFKRLGVVEEVEHVLREY-GLRETYSKIP 416 (423)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~ 416 (423)
+......+...-.+.+.|+.++|.++|..+ ++++.++..|
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 445566777888899999999999999998 6667777666
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.3e-13 Score=136.97 Aligned_cols=298 Identities=10% Similarity=-0.022 Sum_probs=236.5
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK 183 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 183 (423)
.+......+.+.|++++|++.|++. ..|+...|..+..++...|+++.|...+...++.. +.+...|..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999997 56888889999999999999999999988887764 34667888899999999
Q ss_pred CCHHHHHHHHHHHHHcCC----------------------------CC-CHHHHHHH-----------------------
Q 014507 184 MQIQNAENTLLAMKRRGF----------------------------IC-DQVTLTVM----------------------- 211 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~----------------------------~p-~~~~~~~l----------------------- 211 (423)
|++++|..-|......+. .| +...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432210 00 00000000
Q ss_pred -------HHHH------HHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 014507 212 -------VVMY------SKAGNLKMAEETFEEIKLLG-EPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE 276 (423)
Q Consensus 212 -------i~~~------~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 276 (423)
+..+ ...+++++|.+.|++..+.+ ..| ....|..+...+...|++++|...+++..+.... ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 0000 11257889999999998765 223 4567888888999999999999999999886432 466
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSAC 355 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 355 (423)
.|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+. .| +...+..+...+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 88899999999999999999999988753 336788999999999999999999999999874 45 467788888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+.|++++|...+++..+. .+.+...++.+...+...|++++|.+.|++..+.
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999999999999998875 3456888999999999999999999999986543
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=9.6e-16 Score=140.19 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=136.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYV 251 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~ 251 (423)
|-.|.+.|...+.++.|...+.+....... ....|..+...|...|++|.|+..|++..+. .|+ ...|+.|..++-
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALK 331 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHH
Confidence 333334444444444444444333332111 2333444444444555566666666555553 333 345666666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAY 330 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 330 (423)
..|++.+|++.|.+....... .....+.|...|...|.++.|..+|....+- .| -....|.|...|-++|++++|.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred hccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHH
Confidence 666666666666666654322 3445666666666666666666666665542 33 3455677777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 331 TAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 331 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
..|++... +.|+ ...|+.+...|...|+.+.|...+.+.+.. .|. .+..+.|...|...|+..+|++-|++-.
T Consensus 409 ~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 409 MCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 77777765 6676 456777777777777887777777777663 343 5667778888888888888888877654
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=3.7e-14 Score=149.84 Aligned_cols=352 Identities=9% Similarity=-0.048 Sum_probs=234.1
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhhhh-----HHHHHH----------
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTKRC-----KAFVKQ---------- 109 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~-----~~~~~~---------- 109 (423)
...|++++|+.. |++..+ ..|+. ...+..+..++.+ ++.+.|...|++..+.+ ...|..
T Consensus 280 ~~~g~~~~A~~~--l~~aL~--~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 280 VDSGQGGKAIPE--LQQAVR--ANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHCCCHHHHHHH--HHHHHH--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 677888888888 777665 35543 2445556565553 45577777777665411 111211
Q ss_pred --HHhccCCCCCHHHHHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH---------
Q 014507 110 --IICVSPETGNLSDLLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK--------- 175 (423)
Q Consensus 110 --ll~~~~~~g~~~~a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 175 (423)
....+.+.|++++|++.|++. ..|+ ...+..+...+...|+.++|...++..++... .+...+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 123556788888888888887 3343 35666677788888888888888887776532 22222222
Q ss_pred ---------------------------------HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 176 ---------------------------------IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK 222 (423)
Q Consensus 176 ---------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 222 (423)
+...+...|++++|.+.+++..+.... +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 233345568888888888887776433 5666777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---------------------------------
Q 014507 223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--------------------------------- 269 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------------- 269 (423)
+|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888877643 223333333333334444555544444332110
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507 270 ------EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343 (423)
Q Consensus 270 ------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 343 (423)
..+.+...+..+...+.+.|+.++|.+.|+...... +.+...+..+...|...|++++|.+.++...+. .|
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p 668 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN 668 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 012344566677788888899999999998888753 336778888899999999999999999977653 34
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 344 -SDKCVALILSACEKENQLNRALEFLIDLERDGF--MV---GKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 344 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
+......+..++...|++++|.++++++..... +| +...+..+...+...|++++|.+.|++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355666777788889999999999998876521 22 234566678888899999999999887743
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=4.8e-13 Score=141.52 Aligned_cols=317 Identities=12% Similarity=0.035 Sum_probs=213.7
Q ss_pred HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CCChh---hHHH------------HHHHHH
Q 014507 87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KPRRA---DWLA------------VLKQLK 146 (423)
Q Consensus 87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p~~~---~~~~------------ll~~~~ 146 (423)
++.+.|...|++..+ .+...+..+...+.+.|++++|++.|++.. .|+.. .|.. ....+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 334666666666544 356677788888888899999998888863 34321 1211 123556
Q ss_pred hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------------
Q 014507 147 LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVM--------------- 211 (423)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------- 211 (423)
+.|++++|...++..++.. +.+...+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHH
Confidence 7888888888888877764 345667777888888899999999999888775322 23333222
Q ss_pred ---------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507 212 ---------------------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 212 ---------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 264 (423)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233445678888888888887754 3356667778888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------C
Q 014507 265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA---------------------------------------G 305 (423)
Q Consensus 265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------g 305 (423)
++.+.... +...+..+...+...++.++|...++.+... .
T Consensus 520 ~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 520 RLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 87764332 3333332223333344444444433322100 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 014507 306 ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT 385 (423)
Q Consensus 306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 385 (423)
.+.+...+..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.++.+.+. -+.+...+..
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~ 676 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRR 676 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHH
Confidence 13344566677788888899999999999888743 235778888888999999999999999987764 2234566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhccc
Q 014507 386 LAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
+..++...|++++|.++++++...
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 888888999999999999987653
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.7e-13 Score=119.30 Aligned_cols=337 Identities=12% Similarity=0.033 Sum_probs=246.8
Q ss_pred eeeeeeccccch-HHHHHHhcCChhhhh----hhHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 014507 75 FTWIQIGPNITE-EQKQAISQFPRKMTK----RCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLME 149 (423)
Q Consensus 75 ~~~~~l~~~~~~-~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~ 149 (423)
.++.++|.++++ .+.+.|..++++... .+..++|.+|.+-.-.-+-+-.-++..+-+.||..|||+++.+.++.|
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 678889999887 455889999988865 466788888876543333222333333337899999999999999999
Q ss_pred CchHH----HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHH
Q 014507 150 HPLYL----QVAELALLEESFEANIRDYTKIIHGYGKKMQIQN-AENTLLAMKR----RGFIC----DQVTLTVMVVMYS 216 (423)
Q Consensus 150 ~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~~~~~li~~~~ 216 (423)
+++.+ .++..+|.+-|+.|...+|..+|..+.+.++..+ |..+..++.. ..++| |...|...+..|.
T Consensus 288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 88765 6777889999999999999999999999888754 4444444433 22333 5566788899999
Q ss_pred HcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 217 KAGNLKMAEETFEEIKLLG----EPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g----~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
+..+.+.|.++-.-+.... +.|+. .-|..+..+.+.....+.-...|+.|.-.-+-|+..+...++.+..-.|
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~ 447 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN 447 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC
Confidence 9999999988876665422 33442 3467788888899999999999999998888899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------------------HHHHHHHHHHHHCCCCCCHHHH
Q 014507 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-QS--------------------QKAYTAFQNMRKAGLEPSDKCV 348 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~m~~~~~~p~~~~~ 348 (423)
.++-.-++|..++..|.......-..++..+++.. +. +.....-.+|.+..+ .....
T Consensus 448 ~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l 525 (625)
T KOG4422|consen 448 RLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSL 525 (625)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHH
Confidence 99999999999998875554444444445555443 11 111112223444343 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcC
Q 014507 349 ALILSACEKENQLNRALEFLIDLERDG----FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYS 413 (423)
Q Consensus 349 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 413 (423)
+.+.-.+.+.|+.++|.+++..+.+.+ ..|.......+++.-.+..+...|..+++-|...+...
T Consensus 526 ~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 526 NCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 777778899999999999999996653 23344445567777778899999999999887665543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=8e-13 Score=133.84 Aligned_cols=355 Identities=12% Similarity=-0.003 Sum_probs=243.4
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~ 121 (423)
...|+.++|+.. +.+... ..|.. ...+..+..++.. ++.+.|..++++..+ .+...+..+...+...|+++
T Consensus 26 ~~~g~~~~A~~~--~~~~~~--~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 26 LWAGQDAEVITV--YNRYRV--HMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHcCCHHHHHHH--HHHHHh--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 677888888766 666544 22332 2234555554543 455777777777533 34556667777778888888
Q ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHH---------
Q 014507 122 DLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAE--------- 190 (423)
Q Consensus 122 ~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~--------- 190 (423)
+|+..+++. ..|+...+..+..++...|+.+.|...++...+..+ .+...+..+..++...+..+.|+
T Consensus 101 eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 101 EALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 888888886 334433366677777788888888888887777643 24444455555555555555444
Q ss_pred -------------------------------------HHHHHHHHc-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHH
Q 014507 191 -------------------------------------NTLLAMKRR-GFICDQV-TLT----VMVVMYSKAGNLKMAEET 227 (423)
Q Consensus 191 -------------------------------------~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~g~~~~A~~~ 227 (423)
+.++.+.+. ...|+.. .+. ..+.++...|++++|...
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444432 1122211 111 113445677999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 228 FEEIKLLGEP-LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV---GSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 228 ~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
|+++.+.+.+ |+. .-..+..+|...|++++|...|+++.+..... .......+..++...|++++|.++++.+..
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9999987632 332 22235778999999999999999987654221 134566777788999999999999999886
Q ss_pred CCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 304 AGI-----------TPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 304 ~g~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
..- .|+ ...+..+...+...|+.++|.++++++.... +-+...+..+...+...|++++|++.++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 521 123 2345667788899999999999999998752 3357788888899999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 370 DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 370 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
+..... +.+...+......+.+.|++++|..+++++.+.
T Consensus 418 ~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 418 KAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 988853 334677777888899999999999999988653
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2.4e-12 Score=120.43 Aligned_cols=278 Identities=9% Similarity=-0.033 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHhcCC--Chhh-HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHH--HHHHHHHccCCHHHHHH
Q 014507 117 TGNLSDLLAAWVRFMKP--RRAD-WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYT--KIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 117 ~g~~~~a~~~~~~~~~p--~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~ 191 (423)
.|+++.|.+........ +... |.....+..+.|+.+.+...+..+.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 79999999988876432 2222 323334446799999999999888764 44543333 34678889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHH
Q 014507 192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-------RSYGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~ 264 (423)
.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999998644 7788999999999999999999999999998754322 133444444445556666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 014507 265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP- 343 (423)
Q Consensus 265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 343 (423)
.+.+. .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++++..+...+. .|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 76543 2347788999999999999999999999998874 455532 2344445669999999999999875 35
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
|...+..+...|.+.+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++=
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466788899999999999999999999998 4699999999999999999999999999864
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.5e-12 Score=120.95 Aligned_cols=286 Identities=10% Similarity=-0.020 Sum_probs=212.0
Q ss_pred CCCCCHHHHHHHHHHhc--CCChhh-HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507 115 PETGNLSDLLAAWVRFM--KPRRAD-WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~~--~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
...|+++.|.+.+.+.. .|+... +-....+..+.|+.+.+...+....+....+....--.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 36899999999998873 455433 334445667789999999999887665433333344445788889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCChhHHHHHHHHHH
Q 014507 192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVMAY---VRAGMLDRGEVLLREMD 267 (423)
Q Consensus 192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~ 267 (423)
.++.+.+..+. +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999998644 7778899999999999999999999999998754 433332 222222 33333333444555555
Q ss_pred hCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 268 AQEVY---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM---CALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 268 ~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
+.... .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 44321 37789999999999999999999999999986 344432 122222234457888898888887764
Q ss_pred CCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 342 EPS-D--KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 342 ~p~-~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.|+ + ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454 3 5567889999999999999999996555446799999999999999999999999999973
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=1.4e-11 Score=124.94 Aligned_cols=319 Identities=12% Similarity=0.024 Sum_probs=234.4
Q ss_pred HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHH
Q 014507 87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELA 160 (423)
Q Consensus 87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 160 (423)
++.+.|..++.+... .+...+..+...+.+.|++++|++.|++. ..|+ ...+..+...+...|+.++|...++.
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445666677777654 34456888899999999999999999996 4454 46677777888999999999999998
Q ss_pred HhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------
Q 014507 161 LLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF------------ 228 (423)
Q Consensus 161 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------------ 228 (423)
.++.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.|++.+
T Consensus 109 ~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 109 LVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 88773 44556 888899999999999999999999997544 5556666666666666655444433
Q ss_pred ----------------------------------HHHHHc-CCCCCHH-HHH----HHHHHHHHcCChhHHHHHHHHHHh
Q 014507 229 ----------------------------------EEIKLL-GEPLDKR-SYG----SMVMAYVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 229 ----------------------------------~~m~~~-g~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~m~~ 268 (423)
+.+.+. ...|+.. .+. ..+.++...|++++|...|+++.+
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 344322 1122211 111 113345677899999999999988
Q ss_pred CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 014507 269 QEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLINAYQMAGQSQKAYTAFQNMRKAG---- 340 (423)
Q Consensus 269 ~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---- 340 (423)
.+.. |+. .-..+...|...|++++|+..|+.+....... .......+..++...|++++|.++++.+.+..
T Consensus 266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 7642 332 22235778999999999999999987642111 13456667778899999999999999988642
Q ss_pred -------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 341 -------LEPS---DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 341 -------~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
-.|+ ...+..+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+++..+.+
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 1233 234566777888999999999999999876 35568888999999999999999999999877643
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=123.98 Aligned_cols=354 Identities=12% Similarity=0.026 Sum_probs=251.7
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHHHHHhcCChhhhhhhHH-HHHHH--HhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQKQAISQFPRKMTKRCKA-FVKQI--ICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~-~~~~l--l~~~~~~g~~~ 121 (423)
.+.|++++|+.. |.+..+ ..|+.+...+ .++..+. .++.+.|...+++...++.. .+..+ ...+...|+++
T Consensus 45 ~r~Gd~~~Al~~--L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 45 ARAGDTAPVLDY--LQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HhCCCHHHHHHH--HHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 899999999988 887665 4555321222 4444444 35567788888877654322 33333 45788889999
Q ss_pred HHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 014507 122 DLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKR 198 (423)
Q Consensus 122 ~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 198 (423)
+|+++|+++ ..|+. ..+..+...+...++.++|......+... .|+...+-.++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999998 34544 55666777888899999998888877665 45555564444445446666669999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------------------
Q 014507 199 RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEI----------------------------------------------- 231 (423)
Q Consensus 199 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------------------------------- 231 (423)
.... +...+..+..++.+.|-...|.++..+-
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 8533 6777777888888777655555444322
Q ss_pred -HH-cCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 232 -KL-LGEPLDK-----RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 232 -~~-~g~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
.. .+-.|.. .+..-.+-++...|++.++.+.|+.+...+.+....+-..+.++|...+++++|+.+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 21 1111221 1222345566778899999999999998887656678888999999999999999999998653
Q ss_pred C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507 305 G-----ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-------------LEPS-DKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 305 g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~-~~~~~~li~~~~~~g~~~~a~ 365 (423)
. ..++......|.-+|...+++++|..+++.+.+.. ..|| ...+..++..+.-.|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 2 12344446788899999999999999999998721 1122 233455666788899999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
+.++++... -+-|......+.+.+...|...+|++.++....
T Consensus 437 ~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 437 KKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 999999775 355788888999999999999999999976543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=1.8e-11 Score=122.29 Aligned_cols=352 Identities=9% Similarity=-0.012 Sum_probs=257.2
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeee--ccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCC
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQI--GPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGN 119 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l--~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~ 119 (423)
...|+.++|+.. +++.+ .|+. ...+..+ ...+.. ++.+.|..+++++.+ .+...+..++..+.+.++
T Consensus 79 ~~~G~~~~A~~~--~eka~----~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 79 GWAGRDQEVIDV--YERYQ----SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHcCCcHHHHHH--HHHhc----cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 677888888877 77655 4432 1222222 224443 566899999999865 345667778889999999
Q ss_pred HHHHHHHHHHhc--CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-
Q 014507 120 LSDLLAAWVRFM--KPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAM- 196 (423)
Q Consensus 120 ~~~a~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m- 196 (423)
.++|++.+++.. .|+...+..+...+...++...|...++.+.+.. +-+...+..+..++.+.|-...|+++..+-
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 999999999984 4665555333333333555556888888888875 446666677777777776665555444321
Q ss_pred -----------------------------------------------HHc-CCCCCH-HHH----HHHHHHHHHcCCHHH
Q 014507 197 -----------------------------------------------KRR-GFICDQ-VTL----TVMVVMYSKAGNLKM 223 (423)
Q Consensus 197 -----------------------------------------------~~~-g~~p~~-~~~----~~li~~~~~~g~~~~ 223 (423)
... +-.|.. ..| -=.+-++...|+.++
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 111 111221 112 224566778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507 224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-----VYVGSEVYKALLRGYSMNGNSEGAQRVF 298 (423)
Q Consensus 224 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~ 298 (423)
|++.|+.+...|.+....+-..+.++|...+.+++|..+|+.+.... ..++......|.-+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999877677788999999999999999999999997643 2334445688999999999999999999
Q ss_pred HHHHHCCC-----------CC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 299 EAIQFAGI-----------TP--DA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRA 364 (423)
Q Consensus 299 ~~m~~~g~-----------~p--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 364 (423)
+.+.+... .| |- ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987311 12 21 234556788899999999999999998753 44788899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 365 LEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 365 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+..++..... -+-+..+.......+...|+|++|..+.+.+.
T Consensus 470 ~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 470 EQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999777665 34457778889999999999999988886653
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.1e-14 Score=128.27 Aligned_cols=257 Identities=15% Similarity=0.044 Sum_probs=89.7
Q ss_pred HHHHHhcCCchHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 142 LKQLKLMEHPLYLQVAELALLEES-FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN 220 (423)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 220 (423)
-..+.+.|+++.|..++....... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 334445555555555553333332 2334445555555666677777777777777666433 45556666665 57777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFE 299 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (423)
+++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777665543 2455566667777777777777777777765432 23456667777777777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507 300 AIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 300 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (423)
+..+. .| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|..++++..+. -+.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 77665 34 45666677777777777777777777666543 334455667777777777777777777777664 234
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 379 GKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
|+.+...+.+++...|+.++|.++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666777777777777777777776654
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=6.8e-14 Score=125.04 Aligned_cols=258 Identities=17% Similarity=0.148 Sum_probs=112.5
Q ss_pred HHHhccCCCCCHHHHHHHHHHh---c-CCChhhHHH-HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507 109 QIICVSPETGNLSDLLAAWVRF---M-KPRRADWLA-VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK 183 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~---~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 183 (423)
.+...+.+.|++++|++++.+. . .|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456777889999999999654 2 344444444 444555688899999999988877643 66677777777 789
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
+++++|.++++...+.. ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 466677888899999999999999999987643 356778888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
+++..+.... |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999986543 67788899999999999999999888887653 4466678889999999999999999999988743 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 343 PSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
.|......+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4788888999999999999999998887654
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=8.9e-11 Score=119.83 Aligned_cols=285 Identities=12% Similarity=0.029 Sum_probs=214.9
Q ss_pred cCCCCCHHHHHHHHHHhcC--CCh----hhHHHHHHHHHhcCCchHHHH---H----------------------HHHHh
Q 014507 114 SPETGNLSDLLAAWVRFMK--PRR----ADWLAVLKQLKLMEHPLYLQV---A----------------------ELALL 162 (423)
Q Consensus 114 ~~~~g~~~~a~~~~~~~~~--p~~----~~~~~ll~~~~~~~~~~~a~~---~----------------------~~~~~ 162 (423)
..+.|+.++|.+++.+... ++. .....++..+.+.+......+ + .....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4478899999999988733 222 234466667766655222211 1 11111
Q ss_pred hc-cc-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 014507 163 EE-SF-EA--NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL 238 (423)
Q Consensus 163 ~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 238 (423)
.. +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 11 33 67788888888876 88999999888877763 55544444455556899999999999998654 45
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN 318 (423)
Q Consensus 239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 318 (423)
+...+..+..++.+.|++++|...+++..+.+.. +...+..+.....+.|++++|...+++..+. .|+...|..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 5566777788899999999999999999887532 3344444445556679999999999999875 578889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 014507 319 AYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (423)
++.+.|++++|...+++..+. .|+ ...+..+...+...|++++|...+++..+.. +-+...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999885 454 6677888889999999999999999998852 346788899999999999999
Q ss_pred HHHHHHHHhccc
Q 014507 398 EVEHVLREYGLR 409 (423)
Q Consensus 398 ~A~~~~~~m~~~ 409 (423)
+|...|++..+.
T Consensus 695 eA~~~l~~Al~l 706 (987)
T PRK09782 695 ATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhc
Confidence 999999987544
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2e-11 Score=114.35 Aligned_cols=279 Identities=10% Similarity=-0.021 Sum_probs=214.5
Q ss_pred hHHHHHHhcCChhhhhh--h-HHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHH--HHHHHHHhcCCchHHHHHH
Q 014507 86 EEQKQAISQFPRKMTKR--C-KAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWL--AVLKQLKLMEHPLYLQVAE 158 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~--~ll~~~~~~~~~~~a~~~~ 158 (423)
.++++.|++.....++. + ...|-.......+.|+++.|.+.+.++ ..|+...+. .....+...|+.+.|....
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45556666666655542 1 223333344557999999999999998 346654443 2345777899999999999
Q ss_pred HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-------VTLTVMVVMYSKAGNLKMAEETFEEI 231 (423)
Q Consensus 159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 231 (423)
+...+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9888776 456788889999999999999999999999998665322 23344454445556667777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507 232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR 311 (423)
Q Consensus 232 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (423)
.+. .+.++.....+..++...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +-|..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~ 329 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPL 329 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHH
Confidence 543 2557888999999999999999999999999884 344422 23444456699999999999998763 33667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
.+.++.+.+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++-..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999999999997 469999999999999999999999999997654
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.8e-10 Score=98.33 Aligned_cols=293 Identities=13% Similarity=0.125 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHhcCCChhhH---HHHHHHHHhcCCchHHHHHHHHHhhcc-cCCC--HHHHHHHHHHHHccCCHHHHH
Q 014507 117 TGNLSDLLAAWVRFMKPRRADW---LAVLKQLKLMEHPLYLQVAELALLEES-FEAN--IRDYTKIIHGYGKKMQIQNAE 190 (423)
Q Consensus 117 ~g~~~~a~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~ 190 (423)
+.+.++|.+.|-+|.+-|..|| -+|.+.+...|..+.|..++..+.++. ..-+ ......+..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999999977666554 457788889999999999998887642 1111 123345667788999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507 191 NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK----RSYGSMVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 191 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m 266 (423)
.+|..+.+.|.- -......|+..|-..++|++|++.-+++.+.|-++.. ..|.-|...+....+.+.|...+++.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999886432 4557788999999999999999999999887644432 23556666667778999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 014507 267 DAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK 346 (423)
Q Consensus 267 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 346 (423)
.+.+.+ .+..--.+-+.+...|++++|.+.++...+.+..--..+...+..+|.+.|+.++...++.++.+....++.
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~- 284 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA- 284 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH-
Confidence 887544 444555667889999999999999999998865445677888999999999999999999999885433443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHHhcccCCcCCC
Q 014507 347 CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR---LGVVEEVEHVLREYGLRETYSKI 415 (423)
Q Consensus 347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 415 (423)
-..+...-....-.+.|...+.+-... .|+...+..+++.-.. .|.+.+-...++.|....+..+.
T Consensus 285 -~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 285 -ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred -HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 333433333444456666666555543 5999999999987643 56688888889999877666553
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=1.5e-10 Score=111.12 Aligned_cols=333 Identities=11% Similarity=0.055 Sum_probs=243.4
Q ss_pred cchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--c-CCChhhHHHHHHHHHhcCCchHHHHH
Q 014507 84 ITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--M-KPRRADWLAVLKQLKLMEHPLYLQVA 157 (423)
Q Consensus 84 ~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~-~p~~~~~~~ll~~~~~~~~~~~a~~~ 157 (423)
++++..+.|..++.+..+ ++...|-.|-..|-+.|+.++++..|--. . +-|...|..+-.-..+.|.+..|...
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 345666888888887765 45567888888888889998888887665 3 33457788888888888888888888
Q ss_pred HHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 158 ELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTL----TVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
+...++.. +++...+--=...|-+.|+...|.+.|.++.....+.|..-+ -..++.+...++-+.|.+.+.....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88887776 345555545567788889999998888888887443233222 2345556667777888888877766
Q ss_pred cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHHHH
Q 014507 234 LG-EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY---------------------------VGSEVYKALLRGY 285 (423)
Q Consensus 234 ~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------p~~~~~~~li~~~ 285 (423)
.+ -..+...++.++..+.+...++.|......+...... ++..+ ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 22 2345567888888888888888888877776652222 22222 2344455
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 286 SMNGNSEGAQRVFEAIQFAGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
.+....+....+........+.| +...|.-+..+|.+.|++.+|+.+|..+.....--+...|..+.++|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 66666777777777777766444 5677889999999999999999999999875444457789999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCccc
Q 014507 364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRS 420 (423)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 420 (423)
|.+.+++.... -+.+...--.|...+.+.|+.++|.+++..|...+.. +.++++|
T Consensus 468 A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~-~~e~~a~ 522 (895)
T KOG2076|consen 468 AIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGR-NAEACAW 522 (895)
T ss_pred HHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc-chhhccc
Confidence 99999999885 2345666678888899999999999999998754433 2344444
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=8.7e-10 Score=96.91 Aligned_cols=282 Identities=12% Similarity=0.032 Sum_probs=223.7
Q ss_pred CCCCHHHHHHHHHHhcC-CCh--hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHH
Q 014507 116 ETGNLSDLLAAWVRFMK-PRR--ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENT 192 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~~~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 192 (423)
..|+|.+|.+...+-.+ -+. ..|..-..+.-+.|+.+.+..+.....+..-.++...+-+........|+++.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 37999999999987522 222 344444555567889999988888777765567778888888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHH
Q 014507 193 LLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-------RSYGSMVMAYVRAGMLDRGEVLLRE 265 (423)
Q Consensus 193 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 265 (423)
++++.+.+.. +........++|.+.|++.++..++.++.+.|.-.|. .+|..++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999988665 6788899999999999999999999999999876555 4677777777777777666666766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC
Q 014507 266 MDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-AGLEPS 344 (423)
Q Consensus 266 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~ 344 (423)
.... ..-++..-.+++.-+.++|+.++|.++.++..+++..|... ..-.+.+-++.+.-.+..+.-.+ .+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~-- 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED-- 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--
Confidence 6543 33356678888999999999999999999999887766622 22234566777776666665544 3333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 345 DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+-.+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.+++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 46788999999999999999999997776 57999999999999999999999999998765
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=4.2e-10 Score=114.99 Aligned_cols=260 Identities=11% Similarity=-0.011 Sum_probs=200.3
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV 213 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 213 (423)
+...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44566666666665 78888887666655443 55444444455557899999999999997665 344556677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
.+.+.|++++|...|++..+.. +.+...+..+.....+.|++++|...+++..+.. |+...+..+...+.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999998864 3333444444455556799999999999998754 567889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
|+..++...... +.+...++.+..++...|++++|.+.+++..+. .| +...+..+..++...|++++|...+++..
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998763 336777888888999999999999999999874 45 47788899999999999999999999998
Q ss_pred HCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 373 RDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 373 ~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+. .|+ ..+.-.......+..+++.|.+-+++-
T Consensus 705 ~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 705 DD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred hc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 75 343 455556666677777788888776653
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.8e-11 Score=112.57 Aligned_cols=281 Identities=11% Similarity=-0.019 Sum_probs=207.7
Q ss_pred CHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhccc--CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507 119 NLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESF--EANIRDYTKIIHGYGKKMQIQNAENTL 193 (423)
Q Consensus 119 ~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 193 (423)
+.++|+..|.+. ..++. .....+.++|-+.++.+.++.+|..+.+... ..+.+.|.+.+--+-+ +.++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456677777663 23443 3445566788888888888888887765432 3466777776655433 2222222
Q ss_pred H-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 014507 194 L-AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY 272 (423)
Q Consensus 194 ~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 272 (423)
. .+.+. -+-.+.+|.++.+.|+-+++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+........
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 22222 12267899999999999999999999999998763 236789999999999999999999999988775333
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 273 VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALIL 352 (423)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 352 (423)
+-.+|.-+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|+.++++..... .-|+.+--.-+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 33355556788999999999999999988753 2367777788888899999999999999988744 22444444556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 353 SACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
..+...+++++|...++++++. ++-+..+|..+.+.|.+.|+.+.|..-|--+.+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6777889999999999999885 4445777889999999999999999988877654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.5e-10 Score=100.96 Aligned_cols=258 Identities=15% Similarity=0.118 Sum_probs=194.6
Q ss_pred HHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHH-------------
Q 014507 144 QLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTL------------- 208 (423)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~------------- 208 (423)
++......+++..-.+.+...|++-+...-+....+.-...++++|+.+|+++.+..+- -|..+|
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 44444455556555566667777666665555566666788999999999999886320 033333
Q ss_pred ------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507 209 ------------------TVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 209 ------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 270 (423)
.++.+.|+-.++.++|..+|+...+.+ +.....|+.+..-|....+...|..-++...+.+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 444555666778899999999998875 4466789989999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 271 VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
.. |-..|-.|.++|.-.+.+.-|+-.|++.... +| |...|.+|..+|.+.++.++|.+.|......| ..+...+.
T Consensus 395 p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 395 PR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred ch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 54 8889999999999999999999999988874 55 88999999999999999999999999998765 34667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 350 LILSACEKENQLNRALEFLIDLERD----GFMVG--KEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.|...+-+.++.++|...+++.++. |...+ ...-.-|..-+.+.+++++|.......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999888877652 33222 222233556667788888877755443
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.1e-10 Score=99.35 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34444455555555555555555555544321 133444444555555555555555555544432 2233344444444
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 329 (423)
+...|++++|.+.+++..+.... ......+..+..++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------PQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccc----------------------------------ccchHHHHHHHHHHHHcCCHHHH
Confidence 44444455554444444432111 11223344445555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 330 YTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
.+.+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554422 112344555555555555555555555555544 22344444455555555566666655555543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=4.1e-10 Score=106.02 Aligned_cols=283 Identities=9% Similarity=-0.042 Sum_probs=202.4
Q ss_pred HHHHHHhcCChhhhhh--h-HHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChh--hHHHHHHHHHhcCCchHHHHHHH
Q 014507 87 EQKQAISQFPRKMTKR--C-KAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRA--DWLAVLKQLKLMEHPLYLQVAEL 159 (423)
Q Consensus 87 ~~~~~a~~~~~~m~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~ 159 (423)
++++.|.+.+.+..+. + ...+-.......+.|+.+.|.+.+.+. ..|+.. ............|+.+.|...++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666665555442 2 223334445677889999999999987 346653 23334677788999999999999
Q ss_pred HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHcC
Q 014507 160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLT-VMVVMY---SKAGNLKMAEETFEEIKLLG 235 (423)
Q Consensus 160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~g 235 (423)
.+.+.. +-+......+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+.++.+..
T Consensus 178 ~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 178 KLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 888876 456678889999999999999999999999998765 333332 111221 22333333344555554432
Q ss_pred C---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CH
Q 014507 236 E---PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY-KALLRGYSMNGNSEGAQRVFEAIQFAGITP-DA 310 (423)
Q Consensus 236 ~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 310 (423)
. +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+. .| |.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~ 333 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKP 333 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCCh
Confidence 1 237888999999999999999999999999986543221111 22222334457888999999888765 44 33
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 311 --RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 311 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556688899999999999999999654444679999999999999999999999999997643
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=3.4e-10 Score=98.02 Aligned_cols=200 Identities=16% Similarity=0.080 Sum_probs=157.1
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM 214 (423)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 214 (423)
...+..+...+...|+.+.+...+....+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4667888889999999999999998887654 445778888999999999999999999999887543 66788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987532 223456677778888888888888888888775433 45667777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
|...+++.... .+.+...+..+...+...|+.++|..+++.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877765 234556666677777777888888877776654
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.4e-11 Score=112.00 Aligned_cols=276 Identities=9% Similarity=0.011 Sum_probs=211.7
Q ss_pred HHHhcCChhhhh--hhHH-HHHHHHhccCCCCCHHHHHHHHHHh--cC----CChhhHHHHHHHHHhcCCchHHHHHHHH
Q 014507 90 QAISQFPRKMTK--RCKA-FVKQIICVSPETGNLSDLLAAWVRF--MK----PRRADWLAVLKQLKLMEHPLYLQVAELA 160 (423)
Q Consensus 90 ~~a~~~~~~m~~--~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~--~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 160 (423)
..|...|.+.++ .|+. ....+-.+|-..+++++|.++|+.. .. -+...|.++|--+-+.-.. -.+-..
T Consensus 336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~Laq~ 412 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYLAQD 412 (638)
T ss_pred HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHHHHH
Confidence 556666666554 2332 2344666888999999999999987 23 3557788777543221111 111111
Q ss_pred HhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507 161 LLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK 240 (423)
Q Consensus 161 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 240 (423)
+.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+...... +.+-
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY 489 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY 489 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence 2222 2456789999999999999999999999999887433 67889989899999999999999999987532 1233
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
.+|.-|...|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|++++++..... ..|+.+--..+..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASIL 567 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHH
Confidence 45556778899999999999999999998765 77888889999999999999999999988754 33666656667788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDG 375 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 375 (423)
...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus 568 ~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 889999999999999998 5676 5667888889999999999999998887753
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.7e-13 Score=83.98 Aligned_cols=49 Identities=27% Similarity=0.494 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3e-10 Score=101.08 Aligned_cols=209 Identities=14% Similarity=0.153 Sum_probs=163.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRG 259 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 259 (423)
....|++++|.+.+.+.....-......|| +.-.+-..|++++|++.|-++-.. +.-+..+...+.+.|....+...|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 344688899999999988773332333344 233456789999999999777543 233667777888889889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
.+++.+.... ++.|+.+...|...|-+.|+-.+|.+.+-+--.. ++-+..+..-+..-|....-++++..+|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 9988776654 4557889999999999999999999887554432 344778888888888888899999999998764
Q ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 340 GLEPSDKCVALILSACE-KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 340 ~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
+.|+..-|..++..|. +.|++..|.++++...+. ++-|.....-|++.+...|.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 7899999999988775 589999999999998775 88899999999998877764
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1e-12 Score=83.37 Aligned_cols=49 Identities=29% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2e-09 Score=96.19 Aligned_cols=289 Identities=18% Similarity=0.137 Sum_probs=214.8
Q ss_pred HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH-HHH-HHHHHHHHccCCHH
Q 014507 110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANI-RDY-TKIIHGYGKKMQIQ 187 (423)
Q Consensus 110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~~li~~~~~~~~~~ 187 (423)
.-..+.+.|....|.+.|...+..-+..|..-+....-..+.+.+.. +. .+.+.|. ..- -.+..++....+.+
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHHHHHHHHHHHH
Confidence 33355577888888888887755333444444433322333332221 11 1222221 111 12445666667888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH------------------
Q 014507 188 NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMV------------------ 247 (423)
Q Consensus 188 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li------------------ 247 (423)
++..-.+.....|++-+...-+....+.....++|+|+.+|+++.+... --|..+|..++
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 9998888899999886666656666666788999999999999988631 11444555444
Q ss_pred -------------HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 248 -------------MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314 (423)
Q Consensus 248 -------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 314 (423)
+-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+-++..++-+ +.|-..|-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence 3345567889999999999987655 56788888899999999999999999998753 45889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL 393 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 393 (423)
.+.++|.-.+...-|+-.|++..+ .+| |...|..|...|.+.++.++|++.|......|- .+...+..|.+.|.+.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l 479 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEEL 479 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH
Confidence 999999999999999999999887 455 688999999999999999999999999988764 4678899999999999
Q ss_pred CCHHHHHHHHHHhcc
Q 014507 394 GVVEEVEHVLREYGL 408 (423)
Q Consensus 394 g~~~~A~~~~~~m~~ 408 (423)
++.++|.+.|++-.+
T Consensus 480 ~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVE 494 (559)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999887544
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.6e-09 Score=92.65 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=194.1
Q ss_pred cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHH
Q 014507 148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG-FICD--QVTLTVMVVMYSKAGNLKMA 224 (423)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A 224 (423)
....+.|...|-.|.+.. +-+..+.-++.+.|.+.|..|.|+++.+.+.++. .+-+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888887743 3455667788999999999999999999998872 1111 22345577778899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHH
Q 014507 225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS----EVYKALLRGYSMNGNSEGAQRVFEA 300 (423)
Q Consensus 225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 300 (423)
+.+|..+.+.| ..-......|+..|-...+|++|.++-+++.+.+-.+.. ..|.-|...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999876 446678889999999999999999999999987766543 4677788888888999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507 301 IQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK 380 (423)
Q Consensus 301 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 380 (423)
..+.+ +..+..--.+.+.+...|+++.|.+.|+...+.+..--..+...|..+|...|+.++...++..+.+....+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 88753 223334445667889999999999999999988755556788999999999999999999999998863333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHhc
Q 014507 381 EASCTLAAWFKRLGVVEEVEHVL-REYG 407 (423)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~-~~m~ 407 (423)
..-..+.+.-....-.+.|..++ +.+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 33344444333333445555444 4443
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.1e-09 Score=106.13 Aligned_cols=363 Identities=11% Similarity=0.055 Sum_probs=236.4
Q ss_pred ccccchhhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH-HHHHhcCChhhhh---hhHHHHHHHHh
Q 014507 37 SLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ-KQAISQFPRKMTK---RCKAFVKQIIC 112 (423)
Q Consensus 37 ~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~ll~ 112 (423)
+.++..-.|-.+|++++|... .|...+..|+..++.+--+.+.+-+.+ .+.+..-|+..-+ .+..+...+-.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~y----Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKY----YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHH----HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 334444444678899999888 677888888762333334556666544 4667666776654 23455556666
Q ss_pred ccCCCC----CHHHHHHHHHHhcCCC---hhhHHHHHHHHHhcCCchHHHHHHH----HHhhcccCCCHHHHHHHHHHHH
Q 014507 113 VSPETG----NLSDLLAAWVRFMKPR---RADWLAVLKQLKLMEHPLYLQVAEL----ALLEESFEANIRDYTKIIHGYG 181 (423)
Q Consensus 113 ~~~~~g----~~~~a~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~li~~~~ 181 (423)
.|+..+ ..++|..+..+...+. ..+|..+-..+.. ++......++. .+...+-.+.+...|.+...+.
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 666554 5677777777775443 3455555444433 33333333333 3445566688888999999999
Q ss_pred ccCCHHHHHHHHHHHHHc---CCCCCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Q 014507 182 KKMQIQNAENTLLAMKRR---GFICDQ------V-TLTVMVVMYSKAGNLKMAEETFEEIKLLG---------------- 235 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~---g~~p~~------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------- 235 (423)
..|++++|...|+..... ...+|. . -|| +....-..++++.|.+.|....+..
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 999999999999887655 122222 1 222 3333333445555555555554431
Q ss_pred -----------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----------
Q 014507 236 -----------------EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSM---------- 287 (423)
Q Consensus 236 -----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~---------- 287 (423)
...++..++.+...+.+..++..|.+-|....+. ...+|+++.-.|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 1223334444444455555555555544443332 122455555555554443
Q ss_pred --CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 288 --NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 288 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 365 (423)
.+..++|+++|.+..... +.|...-|-+.-+++..|++++|..+|...++... -+..+|..+.+.|...|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 235678999999888763 44888888999999999999999999999998653 23457889999999999999999
Q ss_pred HHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 366 EFLIDLERD-GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 366 ~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
++|+...+. .-.-+..+...|.+++.++|.+.+|.+.+..-.
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999987665 556688999999999999999999999876543
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=4.3e-09 Score=102.94 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=180.4
Q ss_pred ChhhHHHHHHHHHhc-----CCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHc
Q 014507 134 RRADWLAVLKQLKLM-----EHPLYLQVAELALLEESFEANIRDYTKIIHGYG---------KKMQIQNAENTLLAMKRR 199 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~ 199 (423)
+...|...+.+.... +..+.|...++..++..+ -+...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 335566666654332 234566777776665432 23455555554433 234588999999999888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK 279 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (423)
... +...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 544 77888888888899999999999999998875 445678888899999999999999999999887544 233334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-CVALILSACEK 357 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~ 357 (423)
.++..+...|++++|...+++..... .| +...+..+..++...|+.++|...++++... .|+.. ..+.+...+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 44555677899999999999887653 24 4556777888888999999999999887653 44433 34444555666
Q ss_pred cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 358 ENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 358 ~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
.| +.+...++.+.+. ...+..... +-..|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4777777776654 222322222 33334456666666665 7776653
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=1.3e-08 Score=89.70 Aligned_cols=285 Identities=12% Similarity=-0.022 Sum_probs=219.2
Q ss_pred hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhcCC--Ch--hhHHHHHHHHHhcCCchHHHHHH
Q 014507 86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFMKP--RR--ADWLAVLKQLKLMEHPLYLQVAE 158 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p--~~--~~~~~ll~~~~~~~~~~~a~~~~ 158 (423)
++++..|+++..+-.+ ..+..|-.-..+.-+.|+.+.+-+...+.-++ |. ..+-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555666655554333 23344555566777899999999999998433 44 44555556677789999998777
Q ss_pred HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-------VTLTVMVVMYSKAGNLKMAEETFEEI 231 (423)
Q Consensus 159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 231 (423)
..+.+.+ +.++.......++|.+.|++..+..++..+.+.|.--+. .+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777665 467788899999999999999999999999999876554 46777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507 232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR 311 (423)
Q Consensus 232 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (423)
... .+.++..-.+++.-+.+.|+.++|.++..+..+.+-.|+ -...-.+.+-++.+.-.+..++-.+.. +-+..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 654 355677777888999999999999999999999887766 223345667788888887777665542 22447
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG 379 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (423)
.+.++-..|.+++.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....-.+|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 888999999999999999999997766 579999999999999999999999999998765433443
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=4.4e-09 Score=102.87 Aligned_cols=233 Identities=12% Similarity=0.044 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHH
Q 014507 168 ANIRDYTKIIHGYGK-----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYS---------KAGNLKMAEETFEEIKL 233 (423)
Q Consensus 168 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 233 (423)
.+...|...+++-.. .+++++|...|++..+.... +...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 455666666666322 24568999999999887433 4556666655444 23458999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHH
Q 014507 234 LGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARM 312 (423)
Q Consensus 234 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~ 312 (423)
.. +-+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+. .|+ ...
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 75 447788888988999999999999999999987643 5678888999999999999999999999876 443 333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 391 (423)
+..+...+...|++++|.+.+++..+.. .|+ ...+..+...+...|+.++|...++++... .+.+....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh
Confidence 3444555777899999999999987653 353 455677788888999999999999987664 2223444556666777
Q ss_pred HcCCHHHHHHHHHHhccc
Q 014507 392 RLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~ 409 (423)
..| ++|...++++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 487 QNS--ERALPTIREFLES 502 (553)
T ss_pred ccH--HHHHHHHHHHHHH
Confidence 777 5888877776553
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=4.1e-11 Score=114.52 Aligned_cols=242 Identities=15% Similarity=0.101 Sum_probs=154.0
Q ss_pred hcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507 130 FMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLT 209 (423)
Q Consensus 130 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 209 (423)
+..|+.+||..++..|+..|+.+.|- ++.-|.-...+.+...|+.++.++..+++.+.+. .|...||+
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 37888888888888888888888887 7777777777778888888888888888888777 66788899
Q ss_pred HHHHHHHHcCCHHH---HHHHHHHHH----HcCCCCCHHHHHHHHHHH--------------HHcCChhHHHHHHHHHHh
Q 014507 210 VMVVMYSKAGNLKM---AEETFEEIK----LLGEPLDKRSYGSMVMAY--------------VRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 210 ~li~~~~~~g~~~~---A~~~~~~m~----~~g~~~~~~~~~~li~~~--------------~~~~~~~~a~~~~~~m~~ 268 (423)
.|..+|...||+.. +.+.+.... ..|+......+-..+.++ .-.|.++.+.+++..+.
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P- 166 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP- 166 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC-
Confidence 99999999988654 333222222 233322222221221211 12223333333332221
Q ss_pred CCCCCCHHHHHH---HHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507 269 QEVYVGSEVYKA---LLRGYSM-NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 269 ~~~~p~~~~~~~---li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 344 (423)
...-++. +++-+.. ...+++-..+-....+ .|++.+|..++.+-.-+|+.+.|..++.+|++.|++.+
T Consensus 167 -----vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 167 -----VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred -----cccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 1111111 1222221 1222333333222322 57888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 345 DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
..-|..|+-+ .++...++.+++-|.+.|+.|+.+|+...+..+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777765 67777788888888888888888888776666665443
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2e-08 Score=89.75 Aligned_cols=365 Identities=12% Similarity=0.096 Sum_probs=195.4
Q ss_pred cccchhhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhh----hh----hhHHHHH
Q 014507 38 LHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKM----TK----RCKAFVK 108 (423)
Q Consensus 38 ~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m----~~----~~~~~~~ 108 (423)
+.+...+|.-..-..+|+.. ++-.++....|+..+.-.| +.+.+-+ .....|.++++.. |. ..+...+
T Consensus 204 l~nlaqqy~~ndm~~ealnt--yeiivknkmf~nag~lkmn-igni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNT--YEIIVKNKMFPNAGILKMN-IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhh--hhhhhcccccCCCceeeee-ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 34444444445566778777 8888888888886433333 4555553 4446677666533 21 1234566
Q ss_pred HHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC------------CCHHHHH
Q 014507 109 QIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE------------ANIRDYT 174 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~ 174 (423)
.+-..+.+.|.++.|+..|+.. ..|+..+--.|+-.+-.-|+.+...+.+..|+.--.. |+....+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 6667888999999999999886 4577755444444444566666666666666543221 2222222
Q ss_pred HHHH-----HHHccC--CHHHHHHHHHHHHHcCCCCCHH-------------HH--------HHHHHHHHHcCCHHHHHH
Q 014507 175 KIIH-----GYGKKM--QIQNAENTLLAMKRRGFICDQV-------------TL--------TVMVVMYSKAGNLKMAEE 226 (423)
Q Consensus 175 ~li~-----~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-------------~~--------~~li~~~~~~g~~~~A~~ 226 (423)
-.|. -.-+.+ +.++++-.--++...-+.|+-. .| -.-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2221 111111 1122222222222211222110 01 111234567777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH------------------------------------HHHcCChhHHHHHHHHHHhCC
Q 014507 227 TFEEIKLLGEPLDKRSYGSMVMA------------------------------------YVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 227 ~~~~m~~~g~~~~~~~~~~li~~------------------------------------~~~~~~~~~a~~~~~~m~~~~ 270 (423)
+++-+.+..-+.-...-+.|... ...+|++++|.+.|++....+
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 77766554322111111111110 013577888888888777765
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------------------CCCCC-CHHHHHHHH
Q 014507 271 VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF--------------------------------AGITP-DARMCALLI 317 (423)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------------------~g~~p-~~~~~~~li 317 (423)
..-....||. -..+-..|++++|++.|-++.. ..+.| |....+.+.
T Consensus 521 asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 4423333332 2344556666766666654431 11122 444455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HHcCCH
Q 014507 318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF-KRLGVV 396 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~g~~ 396 (423)
..|-+.|+-..|++.+-+--.. ++-|..|..-|..-|....-.++++.+|++..- +.|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 5555555555555543322111 222444544444445555556667777776543 789999998777655 568999
Q ss_pred HHHHHHHHHhccc
Q 014507 397 EEVEHVLREYGLR 409 (423)
Q Consensus 397 ~~A~~~~~~m~~~ 409 (423)
++|.++|+.+..+
T Consensus 677 qka~d~yk~~hrk 689 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=7e-09 Score=99.94 Aligned_cols=355 Identities=14% Similarity=0.094 Sum_probs=260.6
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchH-HHHHHhcCChhh---hhhhHHHHHHHHhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEE-QKQAISQFPRKM---TKRCKAFVKQIICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~ 121 (423)
--+|++++|..+ +.|.+++. |. ....|-.+...|-.. +-+.+...+-.. ...|...|-.+-....+.|+++
T Consensus 150 farg~~eeA~~i--~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 150 FARGDLEEAEEI--LMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHhCCHHHHHHH--HHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 345999999988 88887753 32 235677787777743 335554433322 2357789999999999999999
Q ss_pred HHHHHHHHhcCCChhhHH---HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHH----HHHHHHHccCCHHHHHHHHH
Q 014507 122 DLLAAWVRFMKPRRADWL---AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYT----KIIHGYGKKMQIQNAENTLL 194 (423)
Q Consensus 122 ~a~~~~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~ 194 (423)
+|.-.|.+.++-++.-|- .=...|-+.|+...|..-+..+.....+.|..-+. .+++.+...++-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998543332233 33456778999999999999888876544443333 34566777788899999988
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHH
Q 014507 195 AMKRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL---------------------------GEPLDKRSYGSM 246 (423)
Q Consensus 195 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~~~~~~~~~l 246 (423)
..... +-..+...++.++..+.+...++.|......+... ++.++..++ -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87763 22335667889999999999999999998888762 122333331 23
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVY--VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG 324 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 324 (423)
+-++.+.+..+....+..-+.+..+. -+...|.-+..+|...|++.+|..+|..+...-..-+...|-.+.++|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 33445555556666666666666643 3567899999999999999999999999998654557789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHHcCC
Q 014507 325 QSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLE--------RDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
.+++|.+.|+..... .|+ ...-..|-..+.+.|+.++|.+.+..+. ..+..|+..........|.+.|+
T Consensus 464 e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999999873 454 3445566677889999999999999853 33567788888888899999999
Q ss_pred HHHHHHHHHHhcc
Q 014507 396 VEEVEHVLREYGL 408 (423)
Q Consensus 396 ~~~A~~~~~~m~~ 408 (423)
.++=..+-.+|..
T Consensus 542 ~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 542 REEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9886666555544
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=5e-10 Score=107.27 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=167.2
Q ss_pred hcccccccccCCCcceeeeeeccccchHHH-HHHhcCChhhhhh----hHHHHHHHHhccCCCCCHHHHHHHHHHhcCCC
Q 014507 60 AEDMGKTQVKDDTSMFTWIQIGPNITEEQK-QAISQFPRKMTKR----CKAFVKQIICVSPETGNLSDLLAAWVRFMKPR 134 (423)
Q Consensus 60 ~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~-~~a~~~~~~m~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~ 134 (423)
+-.+...|+.|+- .||..++.-|+..++ +.|. +|..|.-+ +...++.++.+..+.++.+.+. .|.
T Consensus 13 la~~e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 13 LALHEISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 5578899999976 999999999996555 6666 88888653 4467889999999888888776 788
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhh-------cccC-CCHHH-------------HHHHHHHHHccCCHHHHHHHH
Q 014507 135 RADWLAVLKQLKLMEHPLYLQVAELALLE-------ESFE-ANIRD-------------YTKIIHGYGKKMQIQNAENTL 193 (423)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~ 193 (423)
..+|..|+.+|++.|+......+...+.. .|+- |.... -..++.-....|.++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997665444443322 1211 00000 111222333344445555554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507 194 LAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV 273 (423)
Q Consensus 194 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 273 (423)
..+...... . +...+++-+.... .-..++....+...-.|+..+|+.++.+-..+|+.+.|..++.+|++.|.+.
T Consensus 163 ~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 444332111 0 1111233332222 2233333332221115899999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
+..-|..|+-+ .++...++.+++.|...|+.|+..|+...+..+..+|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88877777766 78888899999999999999999998888877777555
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=3e-08 Score=94.23 Aligned_cols=287 Identities=11% Similarity=0.028 Sum_probs=205.4
Q ss_pred ccCCCCCHHHHHHHHHHh--cCCChhhH-HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc-----C
Q 014507 113 VSPETGNLSDLLAAWVRF--MKPRRADW-LAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK-----M 184 (423)
Q Consensus 113 ~~~~~g~~~~a~~~~~~~--~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~ 184 (423)
.+...|++++|++.++.. .-+|..++ ......+.+.|+.++|..++..+++.++ .|..-|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 346779999999999875 44666544 4566677889999999999999999873 4555566666666332 3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014507 185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL-KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLL 263 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 263 (423)
+.+...++++++...- |.......+.-.+..-..+ ..+..++..+...|+++ +|+.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 5778889999887763 3333333232222222223 34666777788888654 5666666666555555556666
Q ss_pred HHHHhC----C----------CCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 014507 264 REMDAQ----E----------VYVGS--EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQS 326 (423)
Q Consensus 264 ~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 326 (423)
...... + -.|+. .++..+.+.|-..|++++|++++++..+. .|+ +..|..-.+.+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 655432 1 12344 35566788899999999999999999886 565 67788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH--------HHHHHHHHHHcCCHHH
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEA--------SCTLAAWFKRLGVVEE 398 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--------~~~l~~~~~~~g~~~~ 398 (423)
.+|.+.++..++.. .-|...=+-.+..+.+.|++++|.+++....+.+..|.... ......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999865 34676777778888899999999999999988775553322 2466788999999999
Q ss_pred HHHHHHHhcc
Q 014507 399 VEHVLREYGL 408 (423)
Q Consensus 399 A~~~~~~m~~ 408 (423)
|++-|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.1e-09 Score=91.94 Aligned_cols=231 Identities=15% Similarity=0.033 Sum_probs=189.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
-+-+..+|.+.|.+.+|++.|+.-.+. .|-+.||-.|-..|.+..+++.|+.++.+-.+. .+.|+....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366888999999999999999988776 456678888999999999999999999988875 23344444556777888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
.++.++|.++|+...+.... +.....++...|.-.+++|-|++.++.+...|+ -+...|+.+.-+|.-.+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 89999999999999886543 667777888888899999999999999999885 4788899999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 333 FQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 333 ~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
|++....--.|+ ...|..+-......|++..|.+.|+-..... ..+...++.|.-.-.+.|++++|..+++.-++.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998877544455 3467777777888999999999999877653 346788888888889999999999999876543
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=3.1e-08 Score=93.13 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=179.5
Q ss_pred cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 014507 166 FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-----GF-ICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKL----- 233 (423)
Q Consensus 166 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~----- 233 (423)
.+.-..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334466677999999999999999999987654 31 223333 34477788999999999999999875
Q ss_pred cC-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 234 LG-EPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-----EVY-VG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 234 ~g-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
.| ..|. ..+++.|..+|.+.|++++|...++...+. |.. |. ...++.+...|+..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23 1222 346888888999999999998888776531 221 22 235677788899999999999999865541
Q ss_pred ---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 305 ---GITP----DARMCALLINAYQMAGQSQKAYTAFQNMRKA------GLEP-SDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 305 ---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
-+.+ -..+++.|...|...|++++|.+++++.... +..+ ....++.+...|.+.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1122 2457999999999999999999999988641 1122 245788899999999999999888886
Q ss_pred HHH----CC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 371 LER----DG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 371 m~~----~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
... .| .+-...+|..|...|.+.|++++|.++.+...
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 542 22 22235779999999999999999999988764
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.1e-08 Score=88.60 Aligned_cols=223 Identities=12% Similarity=0.022 Sum_probs=174.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 257 (423)
..+.-.|+.-.|..-|+...+....++. .|--+..+|....+.++....|++..+.+ +-++.+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3455678888899999988887555333 37777888999999999999999998876 446777887788888888999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
+|..=|++.+..... +...|-.+.-+..+.+++++++..|++..++ ++-.+..|+....++...++++.|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999999887654 6777888888888999999999999999876 45578899999999999999999999999887
Q ss_pred HC-----CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 338 KA-----GLEPSDKCVAL-ILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 338 ~~-----~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
+. ++..+..++.. -+-.+.-.+++..|..++++..+.. +-....|..|...-.+.|+.++|+++|++
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 62 22222222211 1111112488999999999988752 23466799999999999999999999986
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.1e-07 Score=92.72 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
|+...+.|.+.|.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|..+|.+..+..-.--+-.+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4444555555555555555555555555443110 01223444555555555555555555544443211011223334
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG----NSEGAQRVFEAIQFAGITPDARMCALLINAYQM 322 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 322 (423)
...|.+.|+.+.+...|+...+.... +..+...|...|...+ ..+.|..++.+..+.- .-|...|-.+...+-.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 44555555555555555555543221 3334444444444332 2333444444333321 1234444333333332
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 323 AGQSQKAYTAFQNMR----KAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 323 ~g~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.. ...++.+|.... ..+-.+.+...|.+.......|+++.|...|....
T Consensus 427 ~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 427 TD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred cC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 22 222233333222 22222334444444444444455554444444443
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=7.1e-09 Score=88.84 Aligned_cols=231 Identities=10% Similarity=0.006 Sum_probs=194.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK 217 (423)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 217 (423)
-+.+.+.|.+.|.+.+|+..+..-+.. .|-+.||-.+-.+|.+..+.+.|+.++.+-.+. ++-|+....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356778889999999998888776665 466778888999999999999999999998876 34355555667788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (423)
.++.++|.++|+...+.. +.++....++...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998865 457778888888899999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 298 FEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 298 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
|+.....--.|+ ...|..+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998876543443 4568888888889999999999999887654 334778999988889999999999999987763
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=9.9e-07 Score=82.65 Aligned_cols=272 Identities=13% Similarity=0.083 Sum_probs=175.1
Q ss_pred HHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--------cCCChhhHHHHHHHHHhcCCchHHHHHH
Q 014507 90 QAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--------MKPRRADWLAVLKQLKLMEHPLYLQVAE 158 (423)
Q Consensus 90 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 158 (423)
+-|.+++.+..+ .+...|-+-...=-.+|+.+.+.++.+++ +..+...|..=..+|-..|..-.++.+.
T Consensus 423 enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 423 ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 444555554443 35566666555556788999988888875 4567777877778888888888888888
Q ss_pred HHHhhcccCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 014507 159 LALLEESFEA--NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE 236 (423)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (423)
...+.-|++- -..+|..-...|.+.+.++-|..+|....+- ++-+...|......=-..|..++...+|++....-
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~- 580 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC- 580 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence 8877777643 3467888888888888888888888877765 33355666666655556677777777777776652
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
+-....|-.....+-..||...|..++.+..+.... +...|-.-+.....+.+++.|..+|.+.... .|+...|.--
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 334445555555666667777777777777665443 5666666677777777777777777666653 4566666555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
+....-.|..++|.+++++..+ ..|+ ...|..+...+-+.++++.|.+.|
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555556666666666666554 2333 223333333444444444444444
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=8.2e-08 Score=90.32 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhhc-----cc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC-
Q 014507 136 ADWLAVLKQLKLMEHPLYLQVAELALLEE-----SF-EANIR-DYTKIIHGYGKKMQIQNAENTLLAMKRR-----GFI- 202 (423)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~- 202 (423)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++... |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55666888999999999998888776654 21 23332 2344677889999999999999998652 221
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhC---CC
Q 014507 203 C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKL-----LGE-PLDK-RSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EV 271 (423)
Q Consensus 203 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~ 271 (423)
| -..+++.|..+|.+.|++++|..+++...+ .|. .|.+ ..++.+...|...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 235678888899999999998888877654 222 2232 24777888899999999999999876542 12
Q ss_pred CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 014507 272 YV----GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GI--TP-DARMCALLINAYQMAGQSQKAYTAFQNMRK-- 338 (423)
Q Consensus 272 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 338 (423)
.+ -..+++.|...|.+.|++++|++++++.... +. .+ ....++.+...|.+.+++++|.++|.+-..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2468999999999999999999999987642 11 22 356788899999999999999999987543
Q ss_pred --CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 339 --AGL-EPS-DKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 339 --~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 344 5789999999999999999999988775
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=3.1e-07 Score=82.47 Aligned_cols=198 Identities=11% Similarity=-0.028 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...|......+...|+.++|...|++..+.... +...|+.+...+...|++++|...|++..+.. +-+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355777778888899999999999998887543 67889999999999999999999999988754 3346778888888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 329 (423)
+...|++++|.+.|+...+.... +. ........+...++.++|.+.+++..... .|+...+ . ......|+..++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence 88899999999999998876433 22 22222233445678999999997655332 2332222 2 233345665544
Q ss_pred HHHHHHHHHC---C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 330 YTAFQNMRKA---G--LEP-SDKCVALILSACEKENQLNRALEFLIDLERDGF 376 (423)
Q Consensus 330 ~~~~~~m~~~---~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 376 (423)
+.+..+.+. . +.| ....|..+...+...|++++|...|++..+...
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344554431 1 112 235788888899999999999999999887653
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.4e-07 Score=83.20 Aligned_cols=220 Identities=14% Similarity=0.040 Sum_probs=159.6
Q ss_pred ccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 014507 182 KKMQIQNAENTLLAMKRRG-FIC--DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR 258 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 258 (423)
..+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456777888888877542 222 24567888888999999999999999999875 4468899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
|...|++..+.... +..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999986544 5678888999999999999999999998875 45432222222234557889999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC----Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 339 AGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GF----MV-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 339 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
.. .|+...+ . ......|+...+ +.++.+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 3332221 2 223345666554 355555432 11 11 34678899999999999999999999877654
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.1e-07 Score=82.67 Aligned_cols=279 Identities=11% Similarity=-0.038 Sum_probs=215.1
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHhcC---CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507 107 VKQIICVSPETGNLSDLLAAWVRFMK---PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK 183 (423)
Q Consensus 107 ~~~ll~~~~~~g~~~~a~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 183 (423)
...-.+-+-..+++.+..++++.... +....+..=|..+...|+...-..+-..+.+. .+-.+.+|-++...|.-.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 33344455677899999999988743 44456666677888888888777766667665 456778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014507 184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLL 263 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 263 (423)
|..++|.+.|.+....... =...|-.+...|+-.|..|.|+..|...-+.= +-..-.+--+.--|.+.+..+.|.++|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999988766322 23578889999999999999999998877631 112222333555688899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 264 REMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GI---T-PDARMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 264 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
.+....... |+...+-+.-.....+.+.+|..+|+..... .+ . ....+++.+..+|.+.+.+++|...++...
T Consensus 404 ~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 998886443 7788888888888889999999999887621 11 1 245678899999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 014507 338 KAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR 392 (423)
Q Consensus 338 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 392 (423)
... +-|..++.++.-.+...|+++.|.+.|.+... +.|+..+-..++..+..
T Consensus 483 ~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 483 LLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 743 44788999999999999999999999998775 67887777777765543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=5.4e-07 Score=85.82 Aligned_cols=259 Identities=12% Similarity=0.056 Sum_probs=187.1
Q ss_pred HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 014507 143 KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA---- 218 (423)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 218 (423)
..+...|+.+.|...+..-.. .+.............+.+.|+.++|..++..+.++++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 455778999999888764322 23334455667788899999999999999999998542 444444555554222
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507 219 -GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD-RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR 296 (423)
Q Consensus 219 -g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 296 (423)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25778888999887652 44444433333333222332 3556677778888864 77777777776666666667
Q ss_pred HHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 014507 297 VFEAIQFA----G----------ITPDAR--MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKEN 359 (423)
Q Consensus 297 ~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 359 (423)
++...... + -.|+.. ++..+...|-..|++++|++++++.++. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 77665432 1 134443 4466678889999999999999999885 566 678888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
++.+|.+.++...... .-|...-+..+..+.++|++++|.+++......+.
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999998864 35778888888999999999999999999987775
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.5e-06 Score=78.56 Aligned_cols=155 Identities=9% Similarity=0.005 Sum_probs=105.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY----SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
..|++.+.++|+...+. ++....||.-+--+| .++.++..|.+++.... |.-|-..+|...|..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 34555555555555551 222333444333333 34566677777766555 346777788888888888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG-FMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+..+++...+.+ +-|..+|......-...|+.+.|..+|+-.++.. .......+.+.|+.=...|.++.|..+++.+.
T Consensus 456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 999999988854 3367788888777778899999999999887752 22234456666666678899999999999887
Q ss_pred ccCC
Q 014507 408 LRET 411 (423)
Q Consensus 408 ~~~~ 411 (423)
+...
T Consensus 535 ~rt~ 538 (677)
T KOG1915|consen 535 DRTQ 538 (677)
T ss_pred Hhcc
Confidence 6543
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.02 E-value=2.9e-06 Score=79.59 Aligned_cols=296 Identities=12% Similarity=0.044 Sum_probs=205.1
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhc--CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507 105 AFVKQIICVSPETGNLSDLLAAWVRFM--KPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG 181 (423)
Q Consensus 105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 181 (423)
..|......--..|..+....++++.+ .|- ...|....+..-..|+...+..+.....+... .+...|-..+..-.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhh
Confidence 445555554445577777777777752 232 23444444555567888888888777777653 36677877888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-RSYGSMVMAYVRAGMLDRGE 260 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~ 260 (423)
...+++.|..+|.+.... .|+...|.--+..-.-.++.++|.+++++..+. -|+- ..|-.+...+-+.++.+.|.
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888776664 456666665555555677788888888777764 3443 34656666666777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 014507 261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA- 339 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 339 (423)
..|..-.+. ++-..-.|-.|...--+.|.+-+|..+++...-++ +.+...|-..|+.-.+.|..+.|..+..+..+.
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766554443 22234467777777777788888888888877664 447788888888888888888887776654421
Q ss_pred ---C-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507 340 ---G-------------------------LEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 340 ---~-------------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 391 (423)
| ..-|+.....+...+-...+++.|.+.|.+..+.+ +.+..+|.-+...+.
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL 862 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence 1 12344555666667777788999999999988863 345788899999999
Q ss_pred HcCCHHHHHHHHHHhcc
Q 014507 392 RLGVVEEVEHVLREYGL 408 (423)
Q Consensus 392 ~~g~~~~A~~~~~~m~~ 408 (423)
+.|.-++-.++++....
T Consensus 863 ~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCET 879 (913)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 99998888888887654
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=7.7e-07 Score=73.05 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=101.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
..-+.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 333444555556666666666665555332 44555555555556666666666665555543 2234445555555555
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
.|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.+...+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 556666665555554431 11123355555555555555555555555555432 1122334445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
+++.....+. ++..+....|+.-...|+.+.+.++=..+.+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555554442 5555555555555555555555544444433
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=2.9e-06 Score=69.75 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
+...|.-.|.+.|+...|..-+++..+.. +-+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34455667777777777777777777764 334567777777777777777777777777776544 5567777777777
Q ss_pred hCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 365 (423)
..|++++|...|+.....-. .--..+|..+.-+..+.|+.+.|.+.|++-.+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777665211 1134566677767777777777777777776642 112455666677777777777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.+++.....+. ++....-..|+.-.+.|+.+.+.++=..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777766644 77777777777777777777776654444
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1.1e-05 Score=74.85 Aligned_cols=298 Identities=11% Similarity=-0.045 Sum_probs=176.5
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHh---c--CCChhhHH-HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH---HH
Q 014507 107 VKQIICVSPETGNLSDLLAAWVRF---M--KPRRADWL-AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK---II 177 (423)
Q Consensus 107 ~~~ll~~~~~~g~~~~a~~~~~~~---~--~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li 177 (423)
|..+...+...|+.+.+.+.+.+. . .++..... .....+...|+.+.+...++...+.. +.|...+.. ..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence 333344444556666666555553 1 22221111 12224456788999988888877664 334444442 11
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICD-QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 256 (423)
......+..+.+.+.++. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 222234555556655554 1122233 3445566678889999999999999999875 44567888899999999999
Q ss_pred hHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHHH
Q 014507 257 DRGEVLLREMDAQEV-YVGS--EVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMC-A--LLINAYQMAGQSQKA 329 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a 329 (423)
++|...+++..+... .|+. ..|..+...+...|+.++|.+++++...... .+..... + .++.-+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998877532 2232 3456788889999999999999999864321 1222211 1 223333444433333
Q ss_pred HHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------cCHHHHHHHHHHHHHcCCHH
Q 014507 330 YTA--FQNMRKAGL--EPSDKCVALILSACEKENQLNRALEFLIDLERDGFM--------VGKEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 330 ~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~~~~~~~~l~~~~~~~g~~~ 397 (423)
.++ ......... ............++...|+.+.|..+++.+...... ......-...-++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 111111110 111222235667778899999999999988764222 01222233334456899999
Q ss_pred HHHHHHHHhcc
Q 014507 398 EVEHVLREYGL 408 (423)
Q Consensus 398 ~A~~~~~~m~~ 408 (423)
+|.+.+.....
T Consensus 325 ~A~~~L~~al~ 335 (355)
T cd05804 325 TALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=5.1e-05 Score=68.94 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHHcCCHHHHHHHHHHHHH-----
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA--RMCALLIN--------AYQMAGQSQKAYTAFQNMRK----- 338 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~--------~~~~~g~~~~a~~~~~~m~~----- 338 (423)
|-.+|--.+..-...|+.+...++|+..... ++|-. ..|...|- .-....+.+.+.++|+...+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 5557777777777889999999999988854 45521 12222211 11234566666666654432
Q ss_pred -------------------------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507 339 -------------------------------AGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA 387 (423)
Q Consensus 339 -------------------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 387 (423)
-|.-|-..+|...|..-.+.+.++.+..++++..+.+ +-|..+|....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 2445666666666666667777777777777777753 23566676666
Q ss_pred HHHHHcCCHHHHHHHHHHhcccC
Q 014507 388 AWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
..=...|+++.|..+|.--.+..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCc
Confidence 66667788888888877655443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=1.7e-05 Score=73.65 Aligned_cols=268 Identities=13% Similarity=-0.019 Sum_probs=165.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhccc-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 137 DWLAVLKQLKLMEHPLYLQVAELALLEESF-EANI-RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM 214 (423)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 214 (423)
.|..+...+...++.+.+...+....+... .++. .........+...|++++|.+.+++..+... .|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 344444555556777765444444333221 2232 2222334456788999999999999888733 24445443 223
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 215 YSK----AGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 215 ~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.... +...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 333 3445555555544 1122333 344556667888999999999999999987643 5678888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHH
Q 014507 290 NSEGAQRVFEAIQFAGI-TPDA--RMCALLINAYQMAGQSQKAYTAFQNMRKAGL-EPSDKCV-A--LILSACEKENQLN 362 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~ 362 (423)
++++|...+++...... .|+. ..|..+...+...|++++|.+++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998876421 2332 3466788899999999999999999864322 1222211 1 3333344455433
Q ss_pred HHHHH--HHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 363 RALEF--LIDLERDGF--MVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 363 ~a~~~--~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+.++ +........ ............++...|+.++|..+++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33333 211111111 111222235777788899999999999988653
No 73
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=7.1e-09 Score=59.11 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.7
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 375 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888877774
No 74
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=5.8e-09 Score=59.48 Aligned_cols=32 Identities=34% Similarity=0.612 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 305 GITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 305 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
|+.||..|||++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.3e-06 Score=76.21 Aligned_cols=257 Identities=12% Similarity=0.011 Sum_probs=200.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 140 AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG 219 (423)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 219 (423)
.-..-|...+++.+...+...+++.. +++...+-.-|.++...|+..+-..+=.++.+.- +-...+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 33344555788888888888777654 4566666667778889999888888888888873 337789999999898999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507 220 NLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--EVYVGSEVYKALLRGYSMNGNSEGAQR 296 (423)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~ 296 (423)
...+|.+.|.+.... .|. ...|-.+..+|+-.|..|+|+..+...-+. |.. -+..| +.--|.+.++.+.|.+
T Consensus 327 k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 327 KYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEK 401 (611)
T ss_pred CcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHH
Confidence 999999999887654 333 357888899999999999999988776652 221 11222 3345778899999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 297 VFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA-----GLE-PSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 297 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
.|...... -| |+...+-+.-.....+.+.+|..+|+..... .-. .-..+++.|..+|.+.+++++|+..++
T Consensus 402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99888754 44 7778888877778889999999999887631 111 134579999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 370 DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 370 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+.... .+-+..++.++.-.|...|+++.|.+.|.+-
T Consensus 480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 98886 4568999999999999999999999999863
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.8e-05 Score=68.55 Aligned_cols=236 Identities=11% Similarity=0.032 Sum_probs=136.7
Q ss_pred cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 164 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
.-++-|+.....+...+...|+.++|+..|+.....++- +......-.-.+.+.|+.+....+...+.... +-+...|
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 345677888888888888889888888888887665211 11111111222345555555555555544321 1122222
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQM 322 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 322 (423)
-.-.......++++.|+.+-++.++.+.. +...|-.--..+...|++++|.=-|+....- .| +..+|.-++.+|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHh
Confidence 22222233344455555554444443221 2223322233444445555555555444432 22 44455555555555
Q ss_pred cCCHHHH------------------------------------HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507 323 AGQSQKA------------------------------------YTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 323 ~g~~~~a------------------------------------~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 365 (423)
.|.+.+| .++++.-.+ +.|+ ....+.+...|...|+.++++
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHH
Confidence 5544444 444443332 4565 456677788889999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
.++++... ..||....+.|.+.+.....+++|.+.|..-..
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99998877 468889999999999999999999998876543
No 77
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.3e-06 Score=79.13 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=126.2
Q ss_pred cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET 227 (423)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 227 (423)
.|+...+..-+...+.....++. .|--+...|....+-++....|+...+.+.. +..+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 45555555555555544332222 2555556666666777777777766666443 555666666666666677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 014507 228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT 307 (423)
Q Consensus 228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (423)
|++..... +-+...|.-+..+..+.+.+++++..|++.++. .+..+..|+.....+...+++++|.+.|+...+. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 76666543 224455666666666666777777777776665 3334566666667777777777777777665542 1
Q ss_pred CC-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 308 PD-------A--RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 308 p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
|+ . ..--.++ .+.-.+++..|..+++...+.. | ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 21 1 1111111 1113366677777777666532 3 244566666666677777777777766543
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=4.5e-05 Score=71.82 Aligned_cols=361 Identities=15% Similarity=0.159 Sum_probs=215.7
Q ss_pred ccccccchhhhhhhcCchhhHhhhhhcccccccccCCC-cceeeeeeccccchH-HHHHHhcCChhhhh---hhHHHHHH
Q 014507 35 NLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDT-SMFTWIQIGPNITEE-QKQAISQFPRKMTK---RCKAFVKQ 109 (423)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~-~~~~~~~l~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~ 109 (423)
|.++--.-++.++.|+-++|... ++.|+.-+. +-+.|.++.-.+... ..+.|.+-|...-. -|...|..
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~------vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYEL------VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred chhHHhccchhhcccchHHHHHH------HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44444444444777777777544 444544333 446777766555533 33666666665432 34555666
Q ss_pred HHhccCCCCCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcc-cCCCHHHHHHHH------HH
Q 014507 110 IICVSPETGNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEES-FEANIRDYTKII------HG 179 (423)
Q Consensus 110 ll~~~~~~g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~ 179 (423)
+--.=++.|+++...+...+.. .|+. ..|..+..+.--.|+...|..+.....+.. -.|+...|.... ..
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 5555566777777777776653 3433 456666666666777777777766665543 245555544333 23
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCChh
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS-MVMAYVRAGMLD 257 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~~~~~ 257 (423)
..+.|..+.|.+.+..-... +. |... -.+-...+.+.+++++|..+|..+... .||..-|.. +..++.+..+.-
T Consensus 195 ~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 44567777777666555443 11 3222 234556677788888888888888876 355555444 333443232222
Q ss_pred HHH-HHHHHH----------------------------------HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 258 RGE-VLLREM----------------------------------DAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 258 ~a~-~~~~~m----------------------------------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
++. .+|... .+.|+++ ++..+...|-.-...+-.+++.-.+.
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 222 334333 2333322 33333333322222221222222221
Q ss_pred H--CC------------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507 303 F--AG------------ITPDARMCA--LLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 303 ~--~g------------~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 365 (423)
. .| -+|....|+ .++..+-..|+++.|+.+++....+ .|+ ...|..=.+.+...|+++.|.
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHH
Confidence 1 01 145555554 4678889999999999999998864 566 445656667888999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
.++++..+-. .+|...-..-..-..++.+.++|.++.....+.+.
T Consensus 426 ~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 426 AWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999988763 46776666777777889999999999999877764
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.7e-05 Score=70.64 Aligned_cols=262 Identities=10% Similarity=0.018 Sum_probs=192.6
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChh----hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRA----DWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK 175 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (423)
-|+.....+.+++...|+.++|...|++. ..|+.. .|..| +.+.|+.+....+...++... +.+...|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 36667788888999999999999999886 555542 23333 345777777766666555432 345555655
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
-........+++.|+.+-++..+.... +...|-.-...+...|+.++|.-.|+..+... +-+...|.-|+.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 566667788999999998888776322 44555545567788899999999999988753 4578899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALL-RGYSMN-GNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
+.+|.-+-+...+. ++.+..+.+.+- ..+.-. .--++|..+++.-... .|+ ....+.+...+...|..+.+..+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99988777665543 222444444441 222222 2347788888877654 564 45677888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 333 FQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 333 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
++.-.. ..||....+.|...+...+.+.++.+.|....+.
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 998876 5799999999999999999999999999988774
No 80
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=2.6e-05 Score=70.25 Aligned_cols=231 Identities=7% Similarity=-0.048 Sum_probs=131.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
+-..+...++.++|+.+.+++.+.... +..+|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 334444556666777777766665322 3344554444445555 4567777777766654 224445554444444455
Q ss_pred Ch--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH---
Q 014507 255 ML--DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA---GQS--- 326 (423)
Q Consensus 255 ~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~--- 326 (423)
+. +++..+++++.+.+.. +..+|+....++.+.|+++++++.++++.+.+ .-+...|+....++.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 42 4566666666666554 66667666666667777777777777776654 23555565555444443 222
Q ss_pred -HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC------
Q 014507 327 -QKAYTAFQNMRKAGLEP-SDKCVALILSACEKE----NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG------ 394 (423)
Q Consensus 327 -~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------ 394 (423)
++..++..++.+. .| |...|+.+...+... +...+|.+++.+..+.+ +.+......|++.|+...
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhh
Confidence 3455555555543 33 455666666666552 23345666666655532 245566677777776532
Q ss_pred ------------CHHHHHHHHHHhcccCCcC
Q 014507 395 ------------VVEEVEHVLREYGLRETYS 413 (423)
Q Consensus 395 ------------~~~~A~~~~~~m~~~~~~~ 413 (423)
..++|.++++.+.+.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir 306 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPMR 306 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcHH
Confidence 3467888888886555443
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=4e-07 Score=80.74 Aligned_cols=242 Identities=10% Similarity=0.059 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHh-cCCC--hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507 117 TGNLSDLLAAWVRF-MKPR--RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTL 193 (423)
Q Consensus 117 ~g~~~~a~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 193 (423)
.|++..++.-.+.- ..|+ ......+.+++...|..+.+. ..+.. +..|.......+...+...++-+.+..-+
T Consensus 14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 45566665444311 1111 123334455555566544332 21212 22455555544444443333444444444
Q ss_pred HHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 014507 194 LAMKRRGFICDQVTLT-VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY 272 (423)
Q Consensus 194 ~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 272 (423)
++....+..++..++. .....+...|++++|++++... .+.......+..|.+.+++|.|.+.++.|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-- 161 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID-- 161 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 3332222222222222 2223444567777777666532 345566666677777777777777777776643
Q ss_pred CCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507 273 VGSEVYKALLRGY----SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV 348 (423)
Q Consensus 273 p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 348 (423)
.|. +...+..++ .-.+.+.+|..+|+++.+. ..++..+.|.+.-++...|++++|.+++.+..+.+ +-|..+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHH
Confidence 232 233333332 2233567777777776543 34566777777777777777777777777765432 2245566
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHH
Q 014507 349 ALILSACEKENQL-NRALEFLIDLER 373 (423)
Q Consensus 349 ~~li~~~~~~g~~-~~a~~~~~~m~~ 373 (423)
..++......|+. +.+.+.+.++..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6666666666666 556666666665
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=7.1e-07 Score=79.18 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVM 248 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~ 248 (423)
...-..+.+++...|+.+.+. .++.... .|.......+...+...++-+.+..-+++....+..++..++. ....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556788899999877544 4443433 6666666655555544455555655555544333332333333 3334
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcC
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ----MAG 324 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g 324 (423)
.+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCch
Confidence 455679999999888542 36678888999999999999999999999975 34433 333444433 344
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 014507 325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVV-EEVEHVL 403 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 403 (423)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++..... +-+..+...++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 799999999998764 46788999999999999999999999999987653 34677777888888888888 7788898
Q ss_pred HHhcc
Q 014507 404 REYGL 408 (423)
Q Consensus 404 ~~m~~ 408 (423)
.+++.
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 88775
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=9.8e-06 Score=75.19 Aligned_cols=247 Identities=16% Similarity=0.136 Sum_probs=182.4
Q ss_pred HhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 146 KLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAE 225 (423)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 225 (423)
.+.|+...|...++..++.. +-+...|-.|.......++-..|+..+.+..+.... +....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45677777777777666655 457788988888889999999999999998888544 6778888888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 226 ETFEEIKLLGEPLDKRSYGSMV-----------MAYVRAGMLDRGEVLLREMD-AQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 226 ~~~~~m~~~g~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
+.++.......+ |..+. ........+....++|-++. ..+..+|..++..|--.|--.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888654311 00000 11112222334555555544 45555788899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 294 AQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 294 a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
|...|+..... +| |...||.|-..++...+.++|..-|++..+ ++|+ ......|.-+|...|.+++|.+.|-..
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999998874 56 788999999999999999999999999987 6776 445566777899999999998887765
Q ss_pred HH---C------CCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 372 ER---D------GFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 372 ~~---~------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
+. . +..++...|..|=.++.-.++.+-+.++.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 42 2 11224467777777777777777665544
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=1.4e-05 Score=69.44 Aligned_cols=185 Identities=11% Similarity=0.025 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS--EVY 278 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 278 (423)
....+-.+...+.+.|++++|...|++..... +.+. .++..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 56677778888888999999999998887753 2122 46677888888899999999999998875432111 244
Q ss_pred HHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 279 KALLRGYSMN--------GNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 279 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
..+..++.+. |+.++|.+.++.+... .|+. ..+..+..... .... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 4455555544 6778888888888765 3432 22222211100 0000 00 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 350 LILSACEKENQLNRALEFLIDLERDG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+...+.+.|++.+|...+++..+.. -+.....+..+..++.+.|++++|.++++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566888999999999999988752 2234577888999999999999999999888654
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.1e-05 Score=68.83 Aligned_cols=320 Identities=9% Similarity=0.013 Sum_probs=192.1
Q ss_pred eeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHH-HHHHHHhcC
Q 014507 77 WIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLA-VLKQLKLME 149 (423)
Q Consensus 77 ~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~-ll~~~~~~~ 149 (423)
+.+++..+.+ .+...+.+++..-.+ ++......+-.+|-...++..|-+.|++. ..|...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 4455554444 333555555544433 35556666777777888888888888876 4565555543 233556677
Q ss_pred CchHHHHHHHHHhhcccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 150 HPLYLQVAELALLEESFEANIRDYTKIIHG--YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET 227 (423)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 227 (423)
.+..|..+...|.+. ++...-..-+.+ .-..+++..+..++++....| +..+.+...-...+.|++++|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777777665542 222222222222 234577777788877776443 455555555556688889999888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-------------CH---------------HHHH
Q 014507 228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV-------------GS---------------EVYK 279 (423)
Q Consensus 228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~---------------~~~~ 279 (423)
|+...+-|---....|+..+.. .+.|+.+.|++...++.++|+.- |. ..+|
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 8888775433356677765544 46688888999888888887651 11 1334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAG-ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE 358 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 358 (423)
.-...+.+.|+.+.|.+-+-.|.-+. ...|.+|...+.-. -..+++.+..+-+.-+.+.+. ....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 44445567788888888887776432 23466666554432 223455555555555555432 3457888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHH-cCCHHHHHHHHHHh
Q 014507 359 NQLNRALEFLIDLERDGFM-VGKEASCTLAAWFKR-LGVVEEVEHVLREY 406 (423)
Q Consensus 359 g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m 406 (423)
.-++.|-.++.+=-...+. .+...|+ |++++.- .-..++|.+-++.+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888877653222111 2344444 5555544 34466666655544
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=2.4e-05 Score=67.99 Aligned_cols=189 Identities=12% Similarity=0.001 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK--RS 242 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~ 242 (423)
......+-.....+...|++++|...|+++...... | ....+..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456777888889999999999999999999876322 1 1246777889999999999999999999876422111 24
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 243 YGSMVMAYVRA--------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314 (423)
Q Consensus 243 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 314 (423)
+..+..++... |+.+.|.+.++.+.+.... +...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 55556666654 6788999999999876443 2222222211100 00 0000 1112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGL-EP-SDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
.+...|.+.|++++|...+++..+..- .| ....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678888999999999998877421 22 3567888889999999999999988887764
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=2.1e-05 Score=74.98 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=179.9
Q ss_pred HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHH
Q 014507 110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNA 189 (423)
Q Consensus 110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 189 (423)
+...+...|-...|+.+|++ ...|..++..|...|+...|..+.....+ -+||+..|..+.+......-+++|
T Consensus 404 laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 44455677889999999987 45677788899999998899888777766 478999999999998888889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 190 ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 190 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
.++++..-.+ .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+-|..-...
T Consensus 477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999876554 11122222234789999999998877754 456788988999999999999999999888775
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHH
Q 014507 270 EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-LEPSDKCV 348 (423)
Q Consensus 270 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~ 348 (423)
... +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.. ..-|....
T Consensus 549 ~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 549 EPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred CCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 443 56799999999999999999999999999876 4566677778888899999999999999887621 12255555
Q ss_pred HHHHHHHHH
Q 014507 349 ALILSACEK 357 (423)
Q Consensus 349 ~~li~~~~~ 357 (423)
..++....+
T Consensus 627 ~~iv~~~~~ 635 (777)
T KOG1128|consen 627 LIIVRTVLE 635 (777)
T ss_pred HHHHHHHHh
Confidence 555555443
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=0.00012 Score=74.70 Aligned_cols=225 Identities=11% Similarity=0.027 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICD---QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
-....|-..|..+...+++++|.+++++.... ++.-. ...|.++++.-..-|.-+...++|++..+.. -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34567888888999999999999999998765 22211 2357777777777788889999999998853 234568
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLINAY 320 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~ 320 (423)
..|...|.+.+..++|.++++.|.+.=- -....|...+..+.+..+-+.|..++.+..+. .| ......-.+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 8999999999999999999999987633 46779999999999999999999999988764 34 344455566667
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHH
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEE 398 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~ 398 (423)
.+.|+.+.+..+|+...... +--...|+..++.-.++|+.+.+..+|++....++.|. -..|...+..=-+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999988643 11345799999999999999999999999999888774 4556666664445566443
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.51 E-value=0.00072 Score=64.01 Aligned_cols=299 Identities=11% Similarity=0.054 Sum_probs=179.1
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhcC--CChhhHHHHHHHHHhcCCchHH----------------------HHHHH
Q 014507 104 KAFVKQIICVSPETGNLSDLLAAWVRFMK--PRRADWLAVLKQLKLMEHPLYL----------------------QVAEL 159 (423)
Q Consensus 104 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a----------------------~~~~~ 159 (423)
...|+.|.+.|.+.|.+++|.++|++.+. -+...|..+..+|++......+ ..-++
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 35799999999999999999999999743 3445566666666543221111 11111
Q ss_pred HHhhcc-----------cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHH
Q 014507 160 ALLEES-----------FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC------DQVTLTVMVVMYSKAGNLK 222 (423)
Q Consensus 160 ~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~ 222 (423)
.+.... -+.++..|..-+. ...|+..+-...+.+..+. +.| -...|..+...|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 111111 1234444443333 2346667777777777654 332 1346788889999999999
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC----------CC-------CHHHHHHHH
Q 014507 223 MAEETFEEIKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV----------YV-------GSEVYKALL 282 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~p-------~~~~~~~li 282 (423)
.|..+|++..+...+-- ..+|......=.+..+++.|+++.+.....-- .| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887543211 23455555555667778888887776543211 11 234566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---c
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD-KCVALILSACEK---E 358 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~ 358 (423)
+.--..|-++....+++.+.+..+. ++...-.....+-.+.-++++.+.|++-+..=-.|+. ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 6666778888888888888765432 2222122222334566778888888776553223442 345555544433 3
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH-HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 359 NQLNRALEFLIDLERDGFMVGK-EA-SCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 359 g~~~~a~~~~~~m~~~g~~~~~-~~-~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
..++.|..+|++..+ |.+|.. .+ |-.....=.+-|....|.+++++..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467888899988888 566542 22 2222222234577888888888743
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00063 Score=59.57 Aligned_cols=293 Identities=13% Similarity=0.055 Sum_probs=191.6
Q ss_pred HHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHH---HHHhcCCchHHHHHHHHHhhcccCCCHHHHHH-HHHHHHccC
Q 014507 109 QIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLK---QLKLMEHPLYLQVAELALLEESFEANIRDYTK-IIHGYGKKM 184 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~ 184 (423)
-+-..+...|.+..|+.-|...+.-|+..|-++.+ .|...|+...|..-+..+++. +||-..-.. =...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34455556788888888888887777766666654 556677777666555555543 455433221 124567888
Q ss_pred CHHHHHHHHHHHHHcCCCCC------------HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 185 QIQNAENTLLAMKRRGFICD------------QVT--LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~p~------------~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
.++.|..=|+...+....-+ ... ....+..+...|+...|+.....+.+.. +-|...|..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888888888877633111 111 1233455566788888888888888765 34777888888888
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------H
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM----CALL---------I 317 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~l---------i 317 (423)
...|++..|..=++...+..-. ++.++.-+-..+...|+.+.++...++..+. .||... |..+ +
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777776665443 5556666777788888888888888877764 454321 2111 1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHc
Q 014507 318 NAYQMAGQSQKAYTAFQNMRKAGLEPSD---KCVALILSACEKENQLNRALEFLIDLERDGFMV-GKEASCTLAAWFKRL 393 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~ 393 (423)
......++|-++++..+...+..-.... ..+..+-.++...|.+.+|+..-.+..+. .| |+.++.--.++|.-.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhh
Confidence 2234567777777777776664322112 23444445556677888888888877763 44 477888888888888
Q ss_pred CCHHHHHHHHHHhccc
Q 014507 394 GVVEEVEHVLREYGLR 409 (423)
Q Consensus 394 g~~~~A~~~~~~m~~~ 409 (423)
..+++|+.=|+.-.+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888877766554
No 91
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00034 Score=63.09 Aligned_cols=168 Identities=7% Similarity=-0.021 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL--KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
++++++..++++.+...+ +..+|+.....+.+.|+. +++..+++++.+.. +-+..+|+....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345555555555554333 333444433333334432 44555555555543 23455555555555555666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhC---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHH
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMN---GN----SEGAQRVFEAIQFAGITPDARMCALLINAYQMA----GQSQKAYT 331 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~ 331 (423)
++++.+.+.. +..+|+.....+.+. |. .++..+...++.... +-|...|+.+...+... ++..+|.+
T Consensus 165 ~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 6666655544 444444444333332 11 133444444444331 22555666665555552 23345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507 332 AFQNMRKAGLEPSDKCVALILSACEK 357 (423)
Q Consensus 332 ~~~~m~~~~~~p~~~~~~~li~~~~~ 357 (423)
.+.+..+.+ ..+......|+..|+.
T Consensus 243 ~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 243 VCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666655432 2234556666666654
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=0.00011 Score=74.93 Aligned_cols=236 Identities=9% Similarity=0.012 Sum_probs=182.8
Q ss_pred CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhc-ccC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 014507 132 KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEE-SFE---ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV 206 (423)
Q Consensus 132 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 206 (423)
.|+. ..|..-|.-..+.++.+.|+.+.+..+.. ++. --...|.++++.-..-|.-+...++|++..+.. . .-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 4655 56777777888899999998888876654 221 123467777777777788899999999998872 1 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGY 285 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~ 285 (423)
.|..|...|.+.+.+++|.++|+.|.+.= .-....|...+..+.+.++-+.|..++.+..+.-.. -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999999853 346788999999999999999999999998875322 1344566677788
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 014507 286 SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD--KCVALILSACEKENQLNR 363 (423)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 363 (423)
.+.|+.+++..+|+...... +.-...|+..|+.-.++|+.+.+..+|++....++.|-. ..|...+.---+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 89999999999999998753 336789999999999999999999999999998887753 455555555555666555
Q ss_pred HHHHHHHH
Q 014507 364 ALEFLIDL 371 (423)
Q Consensus 364 a~~~~~~m 371 (423)
++.+=.++
T Consensus 1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred HHHHHHHH
Confidence 44444443
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.2e-05 Score=66.05 Aligned_cols=317 Identities=12% Similarity=-0.015 Sum_probs=172.7
Q ss_pred hhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHH-HHHhcCChhhhh--hhHHHHHHH-HhccCCCCC
Q 014507 44 KWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQK-QAISQFPRKMTK--RCKAFVKQI-ICVSPETGN 119 (423)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~-~~a~~~~~~m~~--~~~~~~~~l-l~~~~~~g~ 119 (423)
+..+..++..|+.+ +..-.+ -.|. +......+.-+|-+.+. ..|-.-++++.. |...-|.-. ...+-+.+.
T Consensus 19 ~lI~d~ry~DaI~~--l~s~~E--r~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 19 RLIRDARYADAIQL--LGSELE--RSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHhhHHHHHHH--HHHHHh--cCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 33677777777666 332222 1232 12333344444444333 444444444432 111112111 123335667
Q ss_pred HHHHHHHHHHhcC-CChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014507 120 LSDLLAAWVRFMK-PRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAM 196 (423)
Q Consensus 120 ~~~a~~~~~~~~~-p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (423)
+..|+++...+.. |+...-..-+.+.. ..+++..++.+.++... +-+..+.+.......+.|+++.|.+-|+..
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHH
Confidence 7888888877754 43333222333332 35666666666554432 234555555566667888888888888887
Q ss_pred HHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CCHH--------HHHHHH-------
Q 014507 197 KRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-------------LDKR--------SYGSMV------- 247 (423)
Q Consensus 197 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~--------~~~~li------- 247 (423)
.+- |+. ....||..+.. .+.|+.+.|+++..++.++|++ ||+. .-..++
T Consensus 171 lqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 665 555 45677755544 4678888888888888888864 1211 122222
Q ss_pred HHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
..+.+.|+++.|.+-+-+|.-+ ....|+.|...+.-.=. .+++.+..+-+..+...+ +-...||..++-.||++.-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 2345677888888777777532 23345566655433222 344555555555555442 23567888888888888888
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 014507 327 QKAYTAFQNMRKAGL-EPSDKCVALILSACE-KENQLNRALEFLIDLER 373 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 373 (423)
+-|.+++.+=...-. -.+...|+. +.++. -.-..+++.+-++.+.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHH
Confidence 888887765332211 123334443 33333 34456666666665543
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=6.2e-05 Score=63.07 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCC--HHHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMNGN--SEGA 294 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 294 (423)
.++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655554 446667777777777777777777777777665543 55566666654 355555 4677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
.+++++..+.+ +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776653 225566666677777777777777777777664
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=0.00011 Score=61.94 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+-..+...|+-+....+..+..... ..|.......+....+.|++..|...+++..... ++|...|+.+--+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3344444444444444443322211 1233333334444444555555555554444432 2244445555445555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
.+.|..-|.+..+-- .-+...+|.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555554444444321 1123334444444444445555555444444332 112333334444444444544444444
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=0.00051 Score=66.28 Aligned_cols=124 Identities=19% Similarity=0.136 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKE 358 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 358 (423)
.....+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|..... +.|+ ......+...+.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHh
Confidence 34444555555666665555554321 22344555555667778889999998888776 4565 67888999999999
Q ss_pred CCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 359 NQLNRALE--FLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 359 g~~~~a~~--~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
|+..-+.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|..-.
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 98887777 999999874 4578999999999999999999999998643
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=3.3e-05 Score=65.00 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
...-..+.-.|+-+....+........ +-|.......+....+.|++.+|...|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455555566666555555543331 2244555556666666777777777776666543 55666777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAF 333 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 333 (423)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777666666664332 44566666666666677777777766666543 225555556666666667777766654
Q ss_pred HH
Q 014507 334 QN 335 (423)
Q Consensus 334 ~~ 335 (423)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.0006 Score=71.75 Aligned_cols=294 Identities=14% Similarity=-0.020 Sum_probs=187.1
Q ss_pred CCCCCHHHHHHHHHHh---cC-------CChh--hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH----HHHHHHHH
Q 014507 115 PETGNLSDLLAAWVRF---MK-------PRRA--DWLAVLKQLKLMEHPLYLQVAELALLEESFEANI----RDYTKIIH 178 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~---~~-------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~ 178 (423)
...|+++++...+... .. |... ....+-..+...|+++.+....+.........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 4567888888777654 11 1111 1111223445688999998888776653222221 23455666
Q ss_pred HHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRR----GFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEP--L-DKRSYGSM 246 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l 246 (423)
.+...|++++|...+++.... |.. ....++..+...+...|++++|...+++.... |.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999999887643 111 11234556677788999999999998887652 211 1 22345556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQ--EVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMC-----ALL 316 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-----~~l 316 (423)
...+...|++++|...+++.... ...+ ....+..+...+...|+.++|.+.++......- ......+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677789999999999887553 1112 233455566778889999999999988754210 1111111 112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMRKAGLEPS---DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG-KEASCTLAA 388 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~l~~ 388 (423)
+..+...|+.+.|.+++........... ...+..+..++...|+.++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3445668899999999877654221111 112445667788899999999999987653 33332 345677788
Q ss_pred HHHHcCCHHHHHHHHHHhcc
Q 014507 389 WFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~ 408 (423)
++.+.|+.++|.+.+.+..+
T Consensus 740 a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88999999999888877643
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=2e-05 Score=75.13 Aligned_cols=215 Identities=14% Similarity=-0.007 Sum_probs=126.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
=..+...+...|-...|..+|+++. .|...|..|...|+.++|..+..+-.++ +||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3345555666666667766666543 3455666677777777777776666652 5666666666665555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
.--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ ..-..+|-..-.+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 44555565555543322 11111112233566666666666544432 22455666666666666777777776
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 333 FQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 333 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
|..-.. ..|| ...|+.+-.+|.+.++-.+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+.+|.+-
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 666654 3454 5567777777777777777777777766655 334445555555566677777777776665443
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=0.00017 Score=71.62 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 014507 201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK 279 (423)
Q Consensus 201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 279 (423)
...+...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|...+++....... +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3345666666777777777777777777777665 333 445666666667777777777777777665544 555666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.+..++.+.|++++|.++|+++...+ .-+..++..+..++-..|+.++|...|+...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777776532 22356666666666777777777777776665
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=7.8e-05 Score=62.51 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=95.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hhHH
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY-VRAGM--LDRG 259 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~~~--~~~a 259 (423)
.++.+++...++...+.... |...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777777666433 78888888888888888888888888888765 34667777777764 56666 4888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507 260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMC 313 (423)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 313 (423)
.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 8888888887665 67788888888888888888888888887653 4444433
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.5e-05 Score=72.59 Aligned_cols=221 Identities=13% Similarity=0.108 Sum_probs=169.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 257 (423)
.-+.+.|++.+|.-.|+...+..+. +...|.-|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456889999999999999888555 78899999999999999999999999998864 346778888888999999999
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 258 RGEVLLREMDAQEVY--------VGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
.|...++.-.....+ ++...-.. ..+.....+....++|-++.. .+-.+|......|--.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887654321 00000000 112222234455555555544 4545788888888888999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 329 AYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 329 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
|.+.|+.... ++| |..+|+.|...++...+.++|+..|++.++ +.|+ +.+...|.-.|...|.+++|.+.|-+.
T Consensus 449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999987 567 578899999999999999999999999998 4565 444445777899999999999988653
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=0.00053 Score=60.01 Aligned_cols=283 Identities=12% Similarity=-0.003 Sum_probs=192.6
Q ss_pred hHHHHHHhcCChhhhhhhHHHHHHHH---hccCCCCCHHHHHHHHHHh--cCCChhhHH-HHHHHHHhcCCchHHHHHHH
Q 014507 86 EEQKQAISQFPRKMTKRCKAFVKQII---CVSPETGNLSDLLAAWVRF--MKPRRADWL-AVLKQLKLMEHPLYLQVAEL 159 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~--~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~ 159 (423)
+++...|..-|....+.|...|-++. ..|...|+...|+.=+.+. .+||-..-. .-...+.+.|..+.|..-|.
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 44555555555656565555555543 3666777777777777776 566653322 12234566788888888887
Q ss_pred HHhhcccCCC------------HHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 160 ALLEESFEAN------------IRD--YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAE 225 (423)
Q Consensus 160 ~~~~~~~~~~------------~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 225 (423)
.+++....-+ ... ....+..+.-.|+...|+.....+.+..+- |...|..-..+|...|++..|+
T Consensus 131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHH
Confidence 7776643211 111 223445566789999999999999887443 7888888899999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH----HHH-------H--HHHHHhCCCHH
Q 014507 226 ETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV----YKA-------L--LRGYSMNGNSE 292 (423)
Q Consensus 226 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~-------l--i~~~~~~g~~~ 292 (423)
.=++...+.. .-+..++--+-..+...|+.+.++...++..+.+ ||... |.. | +......+++.
T Consensus 210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t 286 (504)
T KOG0624|consen 210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWT 286 (504)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8888777654 3355566667777888999999999999888854 44322 211 1 23345567788
Q ss_pred HHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPDA---RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
++.+-.+...+....-.. ..+..+-.++...|++.+|+....+..+ +.|| ..++---..+|.-..+++.|+.=|
T Consensus 287 ~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 287 ECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888877765322122 3345566778888999999999998876 5565 677777777787777888888877
Q ss_pred HHHHHC
Q 014507 369 IDLERD 374 (423)
Q Consensus 369 ~~m~~~ 374 (423)
+...+.
T Consensus 365 e~A~e~ 370 (504)
T KOG0624|consen 365 EKALEL 370 (504)
T ss_pred HHHHhc
Confidence 777654
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00032 Score=65.62 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=40.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRG-------------FICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKLLG 235 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (423)
....+...|++.+|+++++...+.+ +.-+.. .-..+.-.+-..|+.++|..+|....+..
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3455667899999999999883221 110111 12345566778899999999999998875
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=5e-05 Score=60.15 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=37.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.+.. +...+..+..++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3334444444444444444444332 223344444444444444444444444444443221 33344444444444444
Q ss_pred HHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQ 302 (423)
Q Consensus 291 ~~~a~~~~~~m~ 302 (423)
.++|...|+...
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=0.0023 Score=60.71 Aligned_cols=302 Identities=12% Similarity=0.086 Sum_probs=199.4
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH 178 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 178 (423)
++-+.|+.+--.+....++++|+..|... ..||. ..+.-+--.=++.++.+........+++.. +-....|..+..
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 34477999988999999999999999987 55665 445544444467788888777777776654 345567888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRRG-FICDQVTLTVMVVM------YSKAGNLKMAEETFEEIKLLGEPLDKRSY-GSMVMAY 250 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~ 250 (423)
++.-.|+...|..++++..+.. -.|+...|...... ....|..+.|.+.+..-... ..|...+ .+-...+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHH
Confidence 9999999999999999998764 35677777654433 45678888888888766543 2344443 3556677
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCHHHHH-HHHHHHHHC---CCCC-----C---HHHHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALL-RGYSMNGNSEGAQ-RVFEAIQFA---GITP-----D---ARMCALLI 317 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~---g~~p-----~---~~~~~~li 317 (423)
.+.+++++|..++..+...+ ||...|.-.. .++.+-.+.-++. .+|....+. ...| + ...+...+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 88999999999999999975 5666655554 4444444444444 677665432 1011 0 01111111
Q ss_pred HHHH----HcC-------------CHHHHHHHHHHHH----H----CC----------CCCCHH--HHHHHHHHHHHcCC
Q 014507 318 NAYQ----MAG-------------QSQKAYTAFQNMR----K----AG----------LEPSDK--CVALILSACEKENQ 360 (423)
Q Consensus 318 ~~~~----~~g-------------~~~~a~~~~~~m~----~----~~----------~~p~~~--~~~~li~~~~~~g~ 360 (423)
+-|. +.| +..++- ++++.. . .| -+|+.. |+..++..+-+.|+
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 1111 111 111111 222221 1 11 134433 45667778889999
Q ss_pred HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 361 LNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
++.|..+++..... .|+ ++.|..=.+.+...|+.++|..++++-.+-+.
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999999998875 454 56676777899999999999999998766544
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00054 Score=68.23 Aligned_cols=204 Identities=15% Similarity=0.070 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNA-ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS 245 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 245 (423)
..++.....+=.+.+.-|..++| .+++.+..+. +..........+++.-....... ...++..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQV------------LERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHHH------------HHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 33445555555666677777666 3444444432 22222222223333222222222 3557889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
|.....+.|..++|..+++...+.... +......+...+.+.+++++|+...+...... +-+....+.+..++.+.|+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986543 56678888999999999999999999999763 2356677888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA 387 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 387 (423)
+++|.++|++....+ .-+..++..+..++...|+.++|...|++..+. ..+...-|+.++
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999999843 223788999999999999999999999999876 334445554433
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.36 E-value=0.0021 Score=60.94 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=105.8
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhcC----------CChhhHHHHHHHHHhcCCchH---HHHHHHHHhhcccCCCHHHHH
Q 014507 108 KQIICVSPETGNLSDLLAAWVRFMK----------PRRADWLAVLKQLKLMEHPLY---LQVAELALLEESFEANIRDYT 174 (423)
Q Consensus 108 ~~ll~~~~~~g~~~~a~~~~~~~~~----------p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~ 174 (423)
+..|..+++.+++++|-+.+...+. .+...|..+-...++..+.-. ...+.+.++..-...=-..|+
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 3445555566666666666655422 222334444333333322222 222222222221111125688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG----------------------NLKMAEETFEEIK 232 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~ 232 (423)
+|...|.+.|++++|..++++....- .++.-|+.+.++|++-. +++-.+.-|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 88888999999999999988876652 24444555555554321 1222333343333
Q ss_pred HcC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCCHHHHH
Q 014507 233 LLG-----------EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV------GSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 233 ~~g-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~ 295 (423)
..+ -+.++..|..-... ..|+..+...+|.+..+. +.| -...|..+.+.|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 221 01122223222221 133444445555555432 111 1235666666666677777777
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 296 RVFEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 296 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
.+|++..+-..+.- ..+|..-...-.++.+++.|+++.++.
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 77766654322111 223333334444555555666555544
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=5.1e-05 Score=60.10 Aligned_cols=97 Identities=4% Similarity=-0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.+......+...|++++|...|+........ +...|..+...+.+.|++++|...|++..+.. +.+..++..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4555677778888888888888888777433 67788888888888888888888888888764 457778888888888
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 014507 252 RAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~ 270 (423)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888887754
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=0.0027 Score=66.82 Aligned_cols=266 Identities=11% Similarity=-0.040 Sum_probs=158.8
Q ss_pred HHHHhcCCchHHHHHHHHHhhccc------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHH
Q 014507 143 KQLKLMEHPLYLQVAELALLEESF------EAN--IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ----VTLTV 210 (423)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 210 (423)
..+...++.+++..........-- .+. ......+...+...|++++|...+++..+.-...+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 344557777777666665433210 111 112222334456788999999988887653111121 23455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCC--C-CHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGE---PL--DKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVY--V-GSEVY 278 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~ 278 (423)
+...+...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+++... .+.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 66667788999999888888764211 11 123455566677888999999888877654 2221 1 22344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH--HH--
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFA--GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA--GLEPSDK--CV-- 348 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~-- 348 (423)
..+...+...|++++|...+++.... ...+ ....+..+...+...|++++|.+.++..... ....... ..
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 55566677789999998888876542 1112 2334555666778889999998888877541 1111110 10
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 349 ALILSACEKENQLNRALEFLIDLERDGFMVG---KEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 349 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++...
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112334557888888888776544211111 11134677778889999999999887654
No 111
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.4e-06 Score=50.27 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 344 (423)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00036 Score=67.70 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------cC---------C
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL----------LG---------E 236 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g---------~ 236 (423)
+=..|-..|.|++|.++-+.-.+..+ ..||..-...+-..++.+.|++.|++... .. -
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 33444455666666655544322222 22444444444455566666666554311 00 0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
..|...|.-...-.-..|+.|.|+.+|...++ |.+++...|-.|+.++|-++-++- .|......+
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhl 973 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHL 973 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHH
Confidence 11222233233333344555555555544332 344455555566666666555432 255566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~ 337 (423)
.+.|-+.|++.+|..+|.+..
T Consensus 974 aR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHHH
Confidence 888888888888888887664
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00047 Score=60.58 Aligned_cols=284 Identities=8% Similarity=0.041 Sum_probs=155.5
Q ss_pred CCCHHHHHHHHHHhcC--CChhhHHHHHHH-HHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc--CCHHHHH-
Q 014507 117 TGNLSDLLAAWVRFMK--PRRADWLAVLKQ-LKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK--MQIQNAE- 190 (423)
Q Consensus 117 ~g~~~~a~~~~~~~~~--p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~- 190 (423)
.-.+.+|+++|.+.+. |+-...|.-+.. |.+..-++-+..+....++. ++-++..-|.......+. |+..+++
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 3467889999988854 333455554443 45566666666666554443 333334444443333332 2221111
Q ss_pred -HH----------HHHHHHcC------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507 191 -NT----------LLAMKRRG------------FIC-----DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS 242 (423)
Q Consensus 191 -~~----------~~~m~~~g------------~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 242 (423)
++ .+.+.+.+ +-| -+..--.|+-.|.+.++..+|..+.+++. +.++.-
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~E 318 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYE 318 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHH
Confidence 11 11111111 011 12233446667788999999988887764 223333
Q ss_pred HHHHHHHHHHcC-------ChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 243 YGSMVMAYVRAG-------MLDRGEVLLREMDAQEVYVGSE-VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314 (423)
Q Consensus 243 ~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 314 (423)
|-.-.-..+..| ...-|.+.|+..-+.+..-|+. --.++.+.+.-..++++++-.++.+...=...|...+
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~- 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL- 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence 322222222323 3455677776666555443321 2334445555556777777777777764333344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHH
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA-LILSACEKENQLNRALEFLIDLERDGFMVGKEA-SCTLAAWFKR 392 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~l~~~~~~ 392 (423)
.+.++++..|.+.+|+++|-......++ |..+|- .|.++|.+.+.++.|.+++-++. -+.+..+ ...+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence 4577888888888888888776654433 344554 44556777888887776664432 2222222 3445566778
Q ss_pred cCCHHHHHHHHHHhcccC
Q 014507 393 LGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 393 ~g~~~~A~~~~~~m~~~~ 410 (423)
++.+--|-+.|+.+...+
T Consensus 474 ~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHHhhhHHHccC
Confidence 888888888888776543
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00055 Score=69.06 Aligned_cols=218 Identities=8% Similarity=0.051 Sum_probs=132.4
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHH-HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVL-KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH 178 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 178 (423)
.+...|..|+..+...+++++|.++.+.. ..|+...+-..+ ..+.+.++...+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 34567888999999999999999999876 456664433322 233344443333222 4555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR 258 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 258 (423)
......++..+..+...|...+- +...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 55566666555555555555422 44566677777778888888888888887766 44677777777777777 7777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHH
Q 014507 259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA-------------------GITPDARMCALLINA 319 (423)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~ 319 (423)
|.+++.+.... +...+++.++.++|.++... |...-..++--+-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 77777776654 44445555566666555543 112223334444455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 320 YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 320 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
|...++|+++..+++...+.. +-|.....-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 556666666666666666532 123444445554444
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0012 Score=55.99 Aligned_cols=243 Identities=9% Similarity=0.067 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHh-cC-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH-HHHHH
Q 014507 117 TGNLSDLLAAWVRF-MK-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQN-AENTL 193 (423)
Q Consensus 117 ~g~~~~a~~~~~~~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~ 193 (423)
.|++..++..-... .. .+...-.-+-++|...|.......- . ..|-.|.....-.+......-++-++ ..++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I-~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---I-KEGKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---c-ccccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 45666665554443 22 3333334455566666665443211 1 11223333333333333333444333 33455
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507 194 LAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV 273 (423)
Q Consensus 194 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 273 (423)
+.+......-+......-...|+..|++++|++...... +......=...+.+..+.|.|.+.+++|.+..
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 555555444343444445567888899999988887622 23333333344567778899999999998853
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 274 GSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 274 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
+..|.+.|.+++.+ .+.+.+|.-+|++|.++ ..|+..+.+...-++...|++++|..++++..... .-++.|..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence 45566666665554 46788999999999864 37888888999999999999999999999988754 33567777
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHC
Q 014507 350 LILSACEKENQL-NRALEFLIDLERD 374 (423)
Q Consensus 350 ~li~~~~~~g~~-~~a~~~~~~m~~~ 374 (423)
.++-.-...|.. +-..+.+..++..
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 777766666655 4455566666553
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0004 Score=58.67 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=118.4
Q ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 155 QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
..+.+.+......-+......-...|...|++++|++........ +.... =...+.+..+++.|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL----EAAAL--NVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344454555544445444455556788999999999888772222 33333 345556778899999999999874
Q ss_pred CCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 014507 235 GEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA 310 (423)
Q Consensus 235 g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 310 (423)
-+..|.+-|..++.+ .++..+|.-+|++|-+. ..|+..+.+-...++...|++++|+.++++...+.- .+.
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence 266777777777764 35688899999999875 457888889999999999999999999999887642 355
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 014507 311 RMCALLINAYQMAGQS-QKAYTAFQNMRK 338 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 338 (423)
.+...+|-+-...|.. +-..+.+..++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5555555444444444 444556666655
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00028 Score=71.14 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=143.3
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM 214 (423)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 214 (423)
...+..|+..+...++++.+..+.+..++..+ -....|-.+...+.+.++...+..+ .++..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 35667777777777777777776664444321 1222233333355555554443333 23333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA 294 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 294 (423)
.....++..+..+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.+.. |..+.|.+...|+.. ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 334444544444455555532 34457888999999999999999999999998854 889999999999999 99999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHHH
Q 014507 295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-------------------GLEPSDKCVALILSAC 355 (423)
Q Consensus 295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~li~~~ 355 (423)
++++.+.... +...+++..+.++|.++... |..--..++..+-..|
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9999988753 34444555555555555442 2222234455555667
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 391 (423)
...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 77888999999999998863 346666777888776
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00061 Score=59.88 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=95.6
Q ss_pred HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcC-------CchHHHHHHHHHhhcccCCCHH-HHHHHHHHHH
Q 014507 110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLME-------HPLYLQVAELALLEESFEANIR-DYTKIIHGYG 181 (423)
Q Consensus 110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~ 181 (423)
++-.|.+.+++.+|..+..+.-..++.-|..-.-.++..| ....|++.+..+-+++...|.. --.++..++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 4556677788888877776653333322221111112222 1233445554444444443332 2334445555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVMAYVRAGMLDRGE 260 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~~~~~~a~ 260 (423)
-..++++++..++.++..=..-|.+.+| +..+++..|++.+|+++|-......++ |..+|. .|.++|.++++++.|.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 5556666666666665543333333333 556666666666666666555544333 333333 3445556666666665
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507 261 VLLREMDAQEVYVGSEVY-KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMC 313 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 313 (423)
.++-++.. +.+..+. ..+.+-|.+++++--|-+-|+.+... .|+..-|
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 55433322 1122222 22234455566655555555555543 3444444
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=8.9e-05 Score=58.10 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=33.4
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
..+...|++++|...++.....+.. +...+..+...+.+.|++++|...++.....+ +.+...+..+..++...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 3333344444444444443332211 33333333334444444444444444333321 122333333333444444444
Q ss_pred HHHHHHHHHH
Q 014507 328 KAYTAFQNMR 337 (423)
Q Consensus 328 ~a~~~~~~m~ 337 (423)
+|...|+...
T Consensus 103 ~A~~~~~~al 112 (135)
T TIGR02552 103 SALKALDLAI 112 (135)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.7e-06 Score=48.72 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 343 (423)
+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0023 Score=53.80 Aligned_cols=84 Identities=21% Similarity=0.163 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (423)
.|++++|+++|+.+.+.. +.|.+++-.-+...-..|+.-+|.+-+.+..+. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344555555555555443 334444444444444444444444444444443 222445555555555555555555555
Q ss_pred HHHHHH
Q 014507 298 FEAIQF 303 (423)
Q Consensus 298 ~~~m~~ 303 (423)
++++.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 555443
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.9e-06 Score=48.88 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 239 (423)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 123
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=0.0002 Score=65.97 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA 354 (423)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 354 (423)
......|+..+...++++.|..+++++.+.. |+. ...+++.+...++-.+|.+++++..+.. +-|...+..-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455666777777889999999999998763 553 4457788888888889999988888642 3356666767777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
|.+.++++.|.++.+++.+. .+-+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88899999999999998885 23346689999999999999999999999887
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.20 E-value=0.00016 Score=69.30 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=139.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
.+.+.....+|.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34556677888999999988887732 23346778888999999999999986532 35667888999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
|+.|.++-.+.. |.......|-+-..-.-+.|++.+|+++|-.+. .|+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 999988765543 344456677777777788899999998886665 565 347788888888888887765
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 336 MRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 336 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
-.... -..|-..+..-+-..|++..|.+-|-+..+ |.+-+++|...+.|++|.++-+
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 43211 134556667777788888888877754332 5566777777788888777654
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3e-06 Score=48.48 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGE 236 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (423)
|+.+|.+|++.|+++.|.++|++|++.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33344444444444444444444433333
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=0.00018 Score=56.42 Aligned_cols=118 Identities=14% Similarity=0.015 Sum_probs=87.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 262 LLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 262 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
.+++....... +......+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44455554322 34556677788888999999999998887754 3477888888888889999999999999887754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507 342 EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC 384 (423)
Q Consensus 342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (423)
+.+...+..+...+...|++++|...++...+. .|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 345677777888888999999999999888874 35444433
No 127
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0069 Score=57.05 Aligned_cols=93 Identities=4% Similarity=-0.145 Sum_probs=49.7
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCH-HHHHHHHHH
Q 014507 103 CKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANI-RDYTKIIHG 179 (423)
Q Consensus 103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~ 179 (423)
|...+..-+-+..+.++|++|+.+.+.-...+....-.+=++|+ +.+..++|..... |..++. .+...-...
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQV 119 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHH
Confidence 44445555566667777777775555422111110000233333 4666666655544 333332 244555566
Q ss_pred HHccCCHHHHHHHHHHHHHcC
Q 014507 180 YGKKMQIQNAENTLLAMKRRG 200 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g 200 (423)
+-+.|++++|..+|+.+.+.+
T Consensus 120 lYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcC
Confidence 667777777777777776653
No 128
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=3.7e-05 Score=71.03 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL--GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV 277 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 277 (423)
+.+.+......+++.+....+.+.+..++.+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777888888888888888888888888764 2333345667888889988888888888888888888889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA 323 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 323 (423)
+|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999998888888888777666777776666666655
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0041 Score=62.12 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
..|..+..+-.+.|.+.+|.+-|-+.. |...|..+|+...+.|.|++-.+++...++..-.|...+ .||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHH
Confidence 355666666666666666555443222 555566666666666666666666665555444454332 455566
Q ss_pred HHcCCHHHHHHHH
Q 014507 356 EKENQLNRALEFL 368 (423)
Q Consensus 356 ~~~g~~~~a~~~~ 368 (423)
++.+++.+.++++
T Consensus 1177 Akt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI 1189 (1666)
T ss_pred HHhchHHHHHHHh
Confidence 6666555544443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.0053 Score=56.58 Aligned_cols=199 Identities=15% Similarity=0.064 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
.|+...+...+.+......-..+-.++.+-.+. .-...-|..-+. +...|++++|+..++.+...- +-|+......
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345555555555544443333333333332221 112333443333 347788888888888877652 3355556666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
...+.+.++.++|.+.++++...... .....-.+..++.+.|++.+|..+++...... +-|...|..|.++|...|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 77788888888888888888875432 25566667788888888888888888777553 44788888888888888887
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHH
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD--GFMVGKEASCTLAAW 389 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~ 389 (423)
.++..-..+ .+...|++++|...+....+. .-.|+..-+...|+.
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 777655443 344567777777777666654 122333334444443
No 131
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=7.6e-05 Score=54.33 Aligned_cols=78 Identities=14% Similarity=0.272 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAG--------QSQKAYTAFQNMRKAGLEPSDKCVAL 350 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ 350 (423)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-+.+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666655432 23345566666666667777777777
Q ss_pred HHHHHHH
Q 014507 351 ILSACEK 357 (423)
Q Consensus 351 li~~~~~ 357 (423)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6666543
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00019 Score=66.10 Aligned_cols=124 Identities=11% Similarity=0.058 Sum_probs=75.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
...++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555556667777777777776663 22 33446666666666667777776666542 3355555555556666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
.++++.|..+.+++.+.... +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66677777777666664322 34466666677777777777766666554
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.09 E-value=6.2e-05 Score=69.60 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=109.8
Q ss_pred hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507 163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR--GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK 240 (423)
Q Consensus 163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 240 (423)
..+.+-+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3455667888889999999999999999999998776 33233456679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN 288 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 288 (423)
.+++.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888777888888888888776
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=9.1e-05 Score=53.93 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGM--------LDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555666666666666666666 6666666666666555321 2234455555555555555555555
Q ss_pred HHHHHH
Q 014507 281 LLRGYS 286 (423)
Q Consensus 281 li~~~~ 286 (423)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 135
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0027 Score=63.33 Aligned_cols=215 Identities=8% Similarity=0.010 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
+..|..+..+-.+.|.+.+|.+-|-+ .. |+..|.-+++...+.|.+++-.+++.-.++..-+|.+. +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik--ad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK--AD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh--cC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34667777777777777777665522 22 55667777777777777777777776666655444443 356677
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------------CCCCC
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--------------------GITPD 309 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~ 309 (423)
|++.++..+.++++ ..|+......+-+-|...|.++.|.-+|...... .-.-+
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 77777665554443 1234444444444444444444444333322100 00114
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 014507 310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAW 389 (423)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 389 (423)
..||..+-.+|...+.+.-| .|-..++.....-..-++.-|...|-+++.+.+++..... -.....+|+.|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHH
Confidence 44555555555544444322 2222233334445666777777777777776666553321 12234556666666
Q ss_pred HHHcCCHHHHHHHHHHh
Q 014507 390 FKRLGVVEEVEHVLREY 406 (423)
Q Consensus 390 ~~~~g~~~~A~~~~~~m 406 (423)
|.+- +.++..+-++-.
T Consensus 1323 Ysky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHhc-CHHHHHHHHHHH
Confidence 6653 344444444433
No 136
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0032 Score=56.71 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
+.+..|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++... .-.| .-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP--IGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKSP--IGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC--CChHHHHHHHH
Confidence 55566777788899999999988876 79999999999999999999988876442 2233 67899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
+.|...+|..+..+ ++ +..-+..|.++|++.+|.+.--+.++.+
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~kd~~ 292 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEKDID 292 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcCCHH
Confidence 99999999988877 22 2567788899999999988866655543
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00073 Score=53.66 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALI 351 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l 351 (423)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3566666666666666542 112 12223344566667777777777777766542222 1233345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
...+...|++++|...++...... .....+....+.|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666777777777775533222 2344555666777777777777777654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00068 Score=53.82 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=8.7
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 014507 250 YVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~ 269 (423)
+...|++++|...|+...+.
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhh
Confidence 33444444444444444443
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.013 Score=54.63 Aligned_cols=321 Identities=13% Similarity=0.022 Sum_probs=180.0
Q ss_pred cchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHH
Q 014507 84 ITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVA 157 (423)
Q Consensus 84 ~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 157 (423)
++.++.+.|...|-.... .|-+.|..=..+|+..|++++|++=-.+- +.|+. ..|+....++.-.|++++|..-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 344555556655554432 35556666677888888888887665554 55665 5688888888888888888777
Q ss_pred HHHHhhcccCCCHHHHHHHHHHHHccCC---------------------------------------------------H
Q 014507 158 ELALLEESFEANIRDYTKIIHGYGKKMQ---------------------------------------------------I 186 (423)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~li~~~~~~~~---------------------------------------------------~ 186 (423)
+..-++.. +-|...++.+..++..... +
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 76555443 2344556666655521100 0
Q ss_pred HHHHHHHHHHH-----HcC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 187 QNAENTLLAMK-----RRG-------FIC------------D----------QVTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 187 ~~a~~~~~~m~-----~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
..|...+.... ..| ..| | ..-...+.++..+..+++.|.+-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 00000000000 000 001 0 0112445556666666777777777666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA-------LLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
+.. -+..-++..-.+|...|.+......-....+.|.. ...-|+. +-.+|.+.++++.|...|.+.....
T Consensus 252 el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 653 34445556666667777666665555555554433 2222332 3335555667777777777655443
Q ss_pred CCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 306 ITPDARMC-------------------------ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 306 ~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
..|+..+- ..=...+.+.|++..|.+.|.++++.. +-|...|..-.-+|.+.|.
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence 34433220 111334566778888888888877754 3356777777777777777
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 361 LNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
+..|..=.+...+.. ++....|..=..++.-..+|+.|.+.|.+-.+.+
T Consensus 408 ~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 408 YPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777776666655541 2233445444555555667777777777655543
No 140
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.96 E-value=0.013 Score=56.97 Aligned_cols=250 Identities=12% Similarity=-0.002 Sum_probs=168.9
Q ss_pred HHHHHHHHHhcCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507 121 SDLLAAWVRFMKP---RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMK 197 (423)
Q Consensus 121 ~~a~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 197 (423)
.++++.+++.++- |..+.-.+---++..++.+.|.......++-+..-+...|..+.-.+...+++.+|+.+.+...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4566667766332 2233333344567788899998888888888778899999999999999999999999988765
Q ss_pred Hc-CCC------------------CCHHHHHHHHHHHHH---------c--------------CCHHHHHHHHHHHH---
Q 014507 198 RR-GFI------------------CDQVTLTVMVVMYSK---------A--------------GNLKMAEETFEEIK--- 232 (423)
Q Consensus 198 ~~-g~~------------------p~~~~~~~li~~~~~---------~--------------g~~~~A~~~~~~m~--- 232 (423)
+. |.. --..|...++..+-. . ++...|.+..+.+.
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 53 210 001122222222210 0 01111111111110
Q ss_pred -----HcC---------CC--CC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 233 -----LLG---------EP--LD------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 233 -----~~g---------~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
..| +. |+ ...|......+.+.+..++|...+.+..+.... ....|......+...|.
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHh
Confidence 001 01 11 123445556667777888888777777765432 56677777778888899
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYT--AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEF 367 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 367 (423)
.++|.+.|.....- .| +..+..++...+.+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.++|.+.
T Consensus 700 ~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 700 LEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999887764 45 56778899999999999888888 999998865 44688999999999999999999999
Q ss_pred HHHHHHC
Q 014507 368 LIDLERD 374 (423)
Q Consensus 368 ~~~m~~~ 374 (423)
|....+.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 9987664
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1e-05 Score=45.10 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 142
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.00039 Score=57.27 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507 239 DKRSYGSMVMAYVR-----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY 285 (423)
Q Consensus 239 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 285 (423)
|..+|..++..|.+ .|..+.....++.|.+-|+.-|..+|+.|++.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF 97 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence 44455555555442 244555555555555555555555555555544
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.004 Score=60.85 Aligned_cols=240 Identities=10% Similarity=0.049 Sum_probs=162.2
Q ss_pred hHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhc---------ccCCCHH
Q 014507 103 CKAFVKQIIC--VSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEE---------SFEANIR 171 (423)
Q Consensus 103 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~ 171 (423)
|..|-.++++ .|...|+.+.|.+.++-. .+...|..+.+.|.+..+.+-|......|... .-.++ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 5567777776 788999999998776543 23457888888888888887776665555331 11232 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
+=..+.-.....|.+++|+.++.+-++. | .|-..|-..|.+++|.++-+.--.-. -..||..-..-+-
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~----D-----LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY----D-----LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLE 869 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH----H-----HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHH
Confidence 3333344456789999999999988775 2 34456677899999988875433221 2345666666666
Q ss_pred HcCChhHHHHHHHHHHhC----------CC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 252 RAGMLDRGEVLLREMDAQ----------EV---------YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM 312 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~----------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 312 (423)
..+|.+.|++.|++.... .. ..|...|.-...-.-..|+++.|+.+|.....
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 678888888777653211 10 11334444445555567777777777776653
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
|-++++..|-.|+.++|.++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 457778888889999998876652 366667788999999999999999988765
No 144
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00037 Score=57.41 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 204 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
|..+|..+++.|.+. |..+-....++.|.+-|+..|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 555666666655533 4555566666666666766677777766666543
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=0.011 Score=54.57 Aligned_cols=163 Identities=13% Similarity=-0.008 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
|+...+...+.+......-..+-.++.+..+. .-...-|..- ..+...|+++.|+..++.+...... |........
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 44455555555544443333333333332221 1122334433 3455778999999999998876433 566666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 361 (423)
+.+.+.++.++|.+.++++... .|+ ...+-.+..+|.+.|++.+|..++++..... +-|+..|..|..+|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 8899999999999999998875 565 5566677888999999999999999887653 55788899999999999988
Q ss_pred HHHHHHHHHHH
Q 014507 362 NRALEFLIDLE 372 (423)
Q Consensus 362 ~~a~~~~~~m~ 372 (423)
.++.....+..
T Consensus 425 ~~a~~A~AE~~ 435 (484)
T COG4783 425 AEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.88 E-value=0.0011 Score=63.72 Aligned_cols=164 Identities=17% Similarity=0.220 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507 217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR 296 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 296 (423)
..+.|.+|+.+++.++... .-..-|..+...|+..|+++.|.++|-+. + .++-.|.+|.+.|+++.|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHH
Confidence 3344444444444444331 12223444445555555555555554321 1 23334555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 297 VFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF 376 (423)
Q Consensus 297 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 376 (423)
+-++.. |....+..|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..++.+++.++-...
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence 544433 112233334444444445555555555543332 2332 345555666666655555442211
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 377 MVGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
.-..|...+..-|...|+...|.+-|-+
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1133445566666666777766665543
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.012 Score=49.65 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHh--------cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507 116 ETGNLSDLLAAWVRF--------MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~--------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (423)
...+.++.++++.++ ..|+. ..|-.++-+....++.+.|+.....+.+.- +-+..+--.-.--+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456778888888775 33555 456677788888999999999988876654 33333333223334567899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507 187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 266 (423)
++|.++++.+.+.. +.|..+|..=+...-..|.--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999886 337777877676666778877898888888876 4679999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHC
Q 014507 267 DAQEVYVGSEVYKALLRGYSMNG---NSEGAQRVFEAIQFA 304 (423)
Q Consensus 267 ~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 304 (423)
.-.... +...+..+...+.-.| +.+.+.+.|....+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 885432 4555556666555444 456788888888764
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.2e-05 Score=43.65 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
|+.+|++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.84 E-value=0.016 Score=54.24 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFE 299 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (423)
.+....+++++...-..--.-+|...|+.-.+..-+..|..+|.+..+.+..+ +..+++++|..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 56667777777664322233467778888888888999999999999988877 77788888888776 67889999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-
Q 014507 300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERD-G- 375 (423)
Q Consensus 300 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g- 375 (423)
--.++ ..-+..--...++-+...++-..+..+|++....++.|| ...|..++.-=..-|++..+.++-+++... .
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 64443 122334446677888888999999999999998877776 468999999889999999998888876543 1
Q ss_pred -CCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 376 -FMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 376 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
..+....-..+++.|.-.+.+..-..=++
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 22223344456666665555544333333
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.034 Score=52.12 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 256 LDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAF 333 (423)
Q Consensus 256 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 333 (423)
.+.....++++... ...| .-+|..+|+.-.+..-++.|..+|.+..+.+..+ ++..++++|.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 34445555555543 2333 3478888999999999999999999999987777 78888999988775 5788999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 334 QNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 334 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
+--.+. .+| +.--...+.-+...++-..+..+|++....+++++ ..+|..+++-=..-|+...+.++-+++...
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 876552 233 34445667777888998999999999998877665 588999999888999999999998877543
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00096 Score=47.78 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 394 (423)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555544421 1122344444444455555555555555544432 122234445555555555
Q ss_pred CHHHHHHHHHHh
Q 014507 395 VVEEVEHVLREY 406 (423)
Q Consensus 395 ~~~~A~~~~~~m 406 (423)
++++|...+++.
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 555555555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00097 Score=47.75 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 333444444555555555444443211 22334444444444444444544444444432 1222334444444444444
Q ss_pred hhHHHHHHHHH
Q 014507 256 LDRGEVLLREM 266 (423)
Q Consensus 256 ~~~a~~~~~~m 266 (423)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.0023 Score=48.60 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=43.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP--LDKRSYGSMVMAY 250 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~ 250 (423)
.....+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|+++.|...|+.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444445555555555555555443211 01223344555555555555555555555442111 1123344444455
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 014507 251 VRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~ 269 (423)
.+.|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555544
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.067 Score=53.18 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHHHHh--cCCChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507 116 ETGNLSDLLAAWVRF--MKPRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
..+++.+|+.-..+. ..|+. .|..+++++. +.|+.++|..+.+.....+.. |..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 567888999888886 34554 5666777664 689999998777766555543 88899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHH
Q 014507 192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM----------LDRGEV 261 (423)
Q Consensus 192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~ 261 (423)
+|++.... -|+......+..+|.+.+++.+-.+.--+|-+. .+-....|-++++.....-. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99998876 456777788889999998887654444444432 23455566666666654321 234566
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 262 LLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFE-AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 262 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
.++.+.+.+ ..-+..-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666554 22233333344455667788999999994 4443322335555567778888899999999999888886
Q ss_pred C
Q 014507 340 G 340 (423)
Q Consensus 340 ~ 340 (423)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.68 E-value=0.073 Score=52.93 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=149.6
Q ss_pred hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 147 LMEHPLYLQVAELALLEESFEANIRDYTKIIHG--YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMA 224 (423)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 224 (423)
..+++..|......+.+.- ||. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.+..++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 3455666655555554432 332 23444444 45789999999999988877666 899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHH
Q 014507 225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN----------SEGA 294 (423)
Q Consensus 225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a 294 (423)
..+|+..... .|+..-...+..+|.+.+.+.+-.+.--+|.+. .+-+.+.|-++++...+... ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999875 577888888999999988877655554444443 33355666666666554321 2346
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 295 QRVFEAIQFAG-ITPDARMCALLINAYQMAGQSQKAYTAFQ-NMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 295 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.+.++.+.+.+ -.-+..-.-.-...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66667766543 11122222333445567888999999984 34333333344555566777788889998888888888
Q ss_pred HCC
Q 014507 373 RDG 375 (423)
Q Consensus 373 ~~g 375 (423)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 875
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.66 E-value=0.0029 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 014507 316 LINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m 336 (423)
+..++.+.|++++|.+.|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333444444444444433
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.032 Score=48.45 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=30.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTL---TVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
...+...|++++|.+.|+.+...-..+ .... -.+..++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333445566666666666665543222 1111 23445555666666666666666554
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0023 Score=56.95 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM-YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|..-+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344445555555555555555555543311 112222222222 11233444455555554443 233444444444555
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVG---SEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+..+.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554433 1111 12444444444444444444444444443
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0026 Score=56.62 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR-AGMLDRGEVLLREMDAQEVYVGSEVYKALLRG 284 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 284 (423)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. ...+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 2234444444444223 46666688888888775 33467778888888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 285 YSMNGNSEGAQRVFEAIQFAGITPDA----RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
+.+.++.+.|..+|+..... .|.. ..|...++-=.+.|+.+.+.++.+++.+ ..|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 88888888888888888765 3333 4788888888888888888888888877 345544444554444
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.006 Score=49.98 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD--KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY 285 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 285 (423)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34444444444555555555544443221111 234444444445555555555555444443221 233333444444
Q ss_pred HhCCC
Q 014507 286 SMNGN 290 (423)
Q Consensus 286 ~~~g~ 290 (423)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00017 Score=51.23 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 323 AGQSQKAYTAFQNMRKAGL-EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 323 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566666666666665321 11333444456666667777777666666 22111 122333345666666777777766
Q ss_pred HHHH
Q 014507 402 VLRE 405 (423)
Q Consensus 402 ~~~~ 405 (423)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0084 Score=53.54 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMK 197 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~ 197 (423)
.|....+.|-..+++++|.+.|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45566667777777777777776654
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.003 Score=58.31 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=38.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA 294 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 294 (423)
+...|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...++++.+.... +...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence 334445555555555444432 223344444444444444444444444444443221 333444444444444444444
Q ss_pred HHHHHHHHH
Q 014507 295 QRVFEAIQF 303 (423)
Q Consensus 295 ~~~~~~m~~ 303 (423)
...|+....
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 444444443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.011 Score=48.47 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345577778888889999999999998887644332 3578888899999999999999999888753 3356667777
Q ss_pred HHHHHHcCChhHHHHHH
Q 014507 247 VMAYVRAGMLDRGEVLL 263 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~ 263 (423)
..++...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77887777765544333
No 165
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.09 Score=49.30 Aligned_cols=220 Identities=12% Similarity=-0.012 Sum_probs=107.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-------H
Q 014507 139 LAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV-------M 211 (423)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------l 211 (423)
..+.++..+..++..+.+-+....+.. -+..-++....++...|.+..+...-+...+.|.. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344455555555666655555555443 44555566666677777776666666555555432 2222222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
..+|.+.++++.|...|.+.......||... +....+++........-.+... ..-...-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 3344555666667776666544322221111 1111222222222221111110 01111113445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
..|...|.++.+.. +-|...|....-+|.+.|.+..|++-.+.-.+. .|+ ...|.-=..++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666553 335566666666666666666666655555543 233 33333333344444556666666666
Q ss_pred HHHC
Q 014507 371 LERD 374 (423)
Q Consensus 371 m~~~ 374 (423)
..+.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 5553
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0036 Score=51.12 Aligned_cols=61 Identities=15% Similarity=-0.062 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555544332111 122444444555555555555555554443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00033 Score=49.69 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 184 MQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEE 230 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (423)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444221 1222233344444444555555444444
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.061 Score=46.68 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY---GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
+...+-.....+.+.|++++|.+.|+++...-.. +...- -.+..++.+.++++.|...+++..+....-...-|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334555567789999999999999886422 22222 3466778899999999999999988654433334444
Q ss_pred HHHHHHh--CC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 281 LLRGYSM--NG---------------NS---EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 281 li~~~~~--~g---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
.+.+.+. .+ |. .+|...|+.+.+. -|++ .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 4444331 11 11 2344444444443 2332 3344444444433321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 341 LEPSDKCVALILSACEKENQLNRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 341 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
.-..-+ .+.+-|.+.|.+..|..-++.+.+. +.+........++++|.+.|..++|.++...+..
T Consensus 174 --la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 --LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred --HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 111112 4556678888888888888888876 5555667777888899999999998888776543
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0098 Score=46.86 Aligned_cols=91 Identities=8% Similarity=-0.028 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|......++. |...+-.+-.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 3334445566666666665555543 223444445555555556666666666555555433 45555555555555566
Q ss_pred HHHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQF 303 (423)
Q Consensus 291 ~~~a~~~~~~m~~ 303 (423)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555554443
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.0048 Score=50.34 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVAL 350 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 350 (423)
....+..+...+...|++++|+..|+........+ ...+|..+...+...|++++|.+.++...+. .| ...++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 34567777888888999999999999887643222 2357888889999999999999999988764 33 3455666
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH
Q 014507 351 ILSACE-------KENQLNRALEFLIDL 371 (423)
Q Consensus 351 li~~~~-------~~g~~~~a~~~~~~m 371 (423)
+...+. ..|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 677777665555543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0054 Score=56.61 Aligned_cols=94 Identities=11% Similarity=-0.073 Sum_probs=81.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
-...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 356677889999999999999987544 77888889999999999999999999998875 4467789899999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 014507 256 LDRGEVLLREMDAQEV 271 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~ 271 (423)
+++|...|++..+.+.
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999998653
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.41 E-value=0.053 Score=54.57 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507 185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 264 (423)
+...|+..|-+..+..+. =...|..|...|+..-+...|.+.|++..+.. ..|........+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 466677777666665332 24578899999998889999999999988765 4577788899999999999999998833
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507 265 EMDAQEV-YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343 (423)
Q Consensus 265 ~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 343 (423)
..-+... ..-...|...--.|.+.++..+|..-|+...... +.|...|..+..+|...|++..|.++|.+... +.|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 3222211 1111223334445777889999999998887653 33889999999999999999999999998876 456
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 344 SDKCVALILSA--CEKENQLNRALEFLIDLERD------GFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 344 ~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+. +|.....+ -+..|.+.++...++..... +..--..++-.+...+.-.|-..+|.+++++-
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 53 44443333 35678899998888876543 22233455555555555566666666666543
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.02 Score=55.40 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC--------hhHHHHHHHHH
Q 014507 201 FICDQVTLTVMVVMYSKAG-----NLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGM--------LDRGEVLLREM 266 (423)
Q Consensus 201 ~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~--------~~~a~~~~~~m 266 (423)
.+.+...|...+++..... +.+.|..+|++..+. .|+ ...|..+..++..... ...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445566666666543322 255666666666664 333 2334433333322111 11122222221
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 267 DAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 267 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
... ....+...|..+.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 11223344444444444445555555555555543 24455555555555555555555555555443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.02 Score=55.42 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=104.0
Q ss_pred cccCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 014507 164 ESFEANIRDYTKIIHGYGKK-----MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--------NLKMAEETFEE 230 (423)
Q Consensus 164 ~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~ 230 (423)
.+.+.|...|...+++.... ++.+.|..+|++..+.... ....|..+..++.... ++..+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45678889999999885543 2377899999999988433 4455555444443321 23344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 014507 231 IKLL-GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD 309 (423)
Q Consensus 231 m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 309 (423)
.... ....+...|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 3332 234466788888777778899999999999999976 57889999999999999999999999988764 455
Q ss_pred HHHH
Q 014507 310 ARMC 313 (423)
Q Consensus 310 ~~~~ 313 (423)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4454
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.04 Score=49.16 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCC-CHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLL----GEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYV-GSEV 277 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~ 277 (423)
|......|-..|++++|.+.|.+..+. +-..+ ...|......|.+ .++++|...+++..+ .|-.. -...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 333444455566666666666555321 11101 1223333333333 366666666655443 22111 1224
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCH
Q 014507 278 YKALLRGYSMN-GNSEGAQRVFEAIQF----AGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL-----EPSD 345 (423)
Q Consensus 278 ~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~ 345 (423)
+..+...|-.. |++++|.+.|++..+ .| .+ -..++..+...+.+.|++++|.++|++....-+ +.+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 44555555555 666666666665543 12 11 123445555666666666666666666654321 1122
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 346 K-CVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 346 ~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
. .|...+-.+...|++..|.+.+++...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 222233344445666666666666544
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.014 Score=45.97 Aligned_cols=97 Identities=4% Similarity=-0.132 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
...-.+..-+...|++++|.++|+.+....+. +..-|-.|.-.+-..|++++|+..|....... +-|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445666677889999999999998887544 56667778888888999999999999988876 35778888889999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 014507 251 VRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~ 269 (423)
...|+.+.|.+-|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887764
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.03 Score=42.37 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=8.1
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m 301 (423)
.+.+...|++++|..++++.
T Consensus 45 astlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444433
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.17 E-value=0.032 Score=56.03 Aligned_cols=181 Identities=13% Similarity=0.012 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHhcCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507 119 NLSDLLAAWVRFMKPRR---ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA 195 (423)
Q Consensus 119 ~~~~a~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (423)
+...|+..|-+..+.|. ..|..|...|+...+...|...+....+.. ..+...+......|+...+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 36677777766654443 567777777777777777777777665543 34566677788888888888888887333
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 014507 196 MKRRGF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG 274 (423)
Q Consensus 196 m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 274 (423)
.-+... ..-...|....-.|.+.+++..|..-|+...... +-|...|..+..+|.+.|.+..|.++|.+....... +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 322210 0012233344555667788888888888877664 447778888888888888888888888877764322 1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 275 SEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
...-.-..-..+..|.+.+|...+....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111222234566778888877776654
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0024 Score=43.00 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
+.|++++|.++|+.+.+.... +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555444222 4444445555555555555555555555543
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.12 Score=50.47 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 273 VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALIL 352 (423)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 352 (423)
...-+.+--+.-+...|+..+|.++-.+.+ .||...|-.=+.+++..++|++-+++-+.++. +.-|.-++
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHH
Confidence 344456666777788899999999998888 79999999999999999999998887666542 35577789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 353 SACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
.+|.+.|+.++|.+++.+. .+.. -.+.+|.+.|++.+|.++--+=++
T Consensus 752 e~c~~~~n~~EA~KYiprv-----~~l~----ekv~ay~~~~~~~eAad~A~~~rd 798 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRV-----GGLQ----EKVKAYLRVGDVKEAADLAAEHRD 798 (829)
T ss_pred HHHHhcccHHHHhhhhhcc-----CChH----HHHHHHHHhccHHHHHHHHHHhcC
Confidence 9999999999999998653 2222 678889999999998887554433
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.09 E-value=0.045 Score=41.44 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLD--KRSYGSMVMAYVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 268 (423)
++-..|+.++|+.+|++....|...+ ...+-.+.+++...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555544443322 12333444444445555555555544443
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.018 Score=45.60 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444455555555555555555432 224445555555555555555555555544
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0026 Score=42.83 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444331 11333444444444444444444444444443
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.012 Score=51.00 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
-..+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++=.+.....+.. -..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3556677777777777777753 345666667777777777777777766666664332 34577777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 294 AQRVFEAIQFAGITPDARMCALLI 317 (423)
Q Consensus 294 a~~~~~~m~~~g~~p~~~~~~~li 317 (423)
|.+.|++..+ +.|+-.+|-.=+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 7777777665 366666554433
No 185
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.02 E-value=0.22 Score=44.28 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=131.7
Q ss_pred HHccCCHHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCCH--
Q 014507 180 YGKKMQIQNAENTLLAMKRRG--FICDQ------VTLTVMVVMYSKAG-NLKMAEETFEEIKLL--------GEPLDK-- 240 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~~-- 240 (423)
..+.|+++.|..++.+....- ..|+. ..|+.-... ...+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999887653 23322 233433333 3455 888887777665442 123333
Q ss_pred ---HHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 241 ---RSYGSMVMAYVRAGMLDR---GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314 (423)
Q Consensus 241 ---~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 314 (423)
.++..++.+|...+..+. |.++++.+...... ....+..-+..+.+.++.+.+.+++..|...- .-....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 467788888888877554 55566666544332 34566666777777999999999999999752 21334455
Q ss_pred HHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----HHHHHHHcC------CHHHHHHHHHHHHHC-CCCcC
Q 014507 315 LLINAY---QMAGQSQKAYTAFQNMRKAGLEPSDK-CVAL----ILSACEKEN------QLNRALEFLIDLERD-GFMVG 379 (423)
Q Consensus 315 ~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~----li~~~~~~g------~~~~a~~~~~~m~~~-g~~~~ 379 (423)
.++..+ ... ....|...+..+....+.|... .... .+....+.+ +++...++++...+. +.+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555544 443 3456777777776655555543 1111 111122222 245555666644443 44455
Q ss_pred HHHHHHHHH-------HHHHcCCHHHHHHHHHH
Q 014507 380 KEASCTLAA-------WFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 380 ~~~~~~l~~-------~~~~~g~~~~A~~~~~~ 405 (423)
..+-.++.. .+.+.+++++|.+.|+-
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 555444433 34578999999999873
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.017 Score=50.07 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=84.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 327 (423)
-..+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|.+=-+..... .| ...+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 366789999999999999997654 7788888899999999999999888877764 34 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
+|.+.|+...+ +.|+-.+|-.=+...
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 99999998877 778877776655543
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.17 Score=42.64 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=33.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
....+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455667777777777777665221 11233444566667777777777777776654
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.049 Score=46.36 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=79.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM----- 246 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----- 246 (423)
+.+.+++.+.-.+.+.-...++.+..+...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666666677777777777777655556666677777777777777777777766554333333333332
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
...|.-.+++..|...+.+....+-. |....|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344456666666667666665433 4444444444444456777777777777764
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.94 E-value=0.042 Score=52.59 Aligned_cols=241 Identities=11% Similarity=-0.008 Sum_probs=128.7
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHh-----------cCCChhhHHHHHHHHHhcCCchHHHHH--HHHHhhcccCCCHHH
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRF-----------MKPRRADWLAVLKQLKLMEHPLYLQVA--ELALLEESFEANIRD 172 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~ 172 (423)
.+.+=+..|...|.+++|.++---+ ...+.-.++..-++|.+..+...-+.+ ++.+.+.|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 3455566777888888887653322 122334455566677766665444333 345666777677654
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHH--cCCCC
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF------------EEIKL--LGEPL 238 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------------~~m~~--~g~~~ 238 (423)
+...++-.|.+.+|-++|.+- |.. |..+..|...+.+|.|.++. ++-.+ ..++-
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 345566678888888887653 322 11233333444444443333 22111 11111
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 014507 239 DKRSYGSMVMAYVRAGMLDRGEVLLRE------MDAQEVY---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD 309 (423)
Q Consensus 239 ~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 309 (423)
.. +....+...|+.++|..+.-+ +.+.+-. .+..+...+..-+.+...+.-|-++|..|-..
T Consensus 706 Pk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 706 PK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred cH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 11 122333445666665544321 1121111 13334445555555666777788888777632
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-----------CVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
..+++.....++|.+|..+-+...+ +.||.. -|.-.-.+|.+.|+-.+|..+++++..
T Consensus 777 ----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3566777888889998888877654 334321 233444556666666666666666544
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.89 E-value=0.0062 Score=40.54 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=24.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555544432 11334444444444555555555555544443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.86 E-value=0.18 Score=40.76 Aligned_cols=130 Identities=13% Similarity=0.064 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 014507 237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG---ITPDARMC 313 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~ 313 (423)
.|++..--.|..+..+.|+..+|...|++....-..-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666666666666666666666554444455555666666666666666666666655532 1222 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
-.+.+.+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34455666666666666666666552 34333322233344555555544443333
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.86 E-value=0.18 Score=42.51 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM 287 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 287 (423)
.....+...|++++|.+.|+++...-. +--....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 345556788999999999999987531 122345667788888999999999999998775332222223333333222
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 288 NGNSEGAQRVFEAIQFAGITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
........ . ...| ...+..+|.-|=......+|...+..+.+. .-..- -.+..-|.+.|.
T Consensus 90 ~~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 90 YKQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-
T ss_pred HHhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHccc
Confidence 11111110 0 0111 123444455555555556665555555431 11111 235666888888
Q ss_pred HHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 361 LNRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 361 ~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
+..|..-++.+.+. +.+........++.+|.+.|..+.|..
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88888888888875 222234556778888888888875543
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.83 E-value=0.0069 Score=40.33 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=25.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
.+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555444321 344444444555555555555555554443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.0086 Score=40.39 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIK 232 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 232 (423)
..|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444555555555555555554444222 3444444444455554 3555555544443
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.44 Score=43.11 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF 390 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 390 (423)
.+.+..|.-+...|+...|.++-.+.. .||..-|..-+.+++..+++++..++... . -++.-|..++++|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 456667788888999999999877775 48999999999999999999987776542 1 2345688999999
Q ss_pred HHcCCHHHHHHHHHHhcc
Q 014507 391 KRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~ 408 (423)
.+.|+..+|..++.+++.
T Consensus 248 ~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHCCCHHHHHHHHHhCCh
Confidence 999999999999988654
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.70 E-value=0.057 Score=41.32 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS 353 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 353 (423)
|..++..+|.++++.|+++....+++..-. +..+... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 456777888888888888887777765432 1111000 0000 0011234566666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHH
Q 014507 354 ACEKENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKR 392 (423)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~ 392 (423)
+|+..|++..|.++++...+. +++.+..+|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666665543 555556666666655443
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.24 Score=40.04 Aligned_cols=133 Identities=10% Similarity=0.016 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---CCCCHHH
Q 014507 201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE---VYVGSEV 277 (423)
Q Consensus 201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~ 277 (423)
..|++...-.|..+....|+..+|...|++....-...|....-.+..+....+++..+..+++++.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4566666667778888888888888888877765556677777777777777888888888887777643 2344 3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
.-.+...+...|..++|+.-|+..... -|+...--..-..+.+.|+.+++..-+.++.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 445566777778888888888877765 3444333333334466676666655544443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.69 E-value=0.012 Score=39.58 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG-MLDRGEVLLREMDA 268 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 268 (423)
+..+|..+...+...|++++|+..|.+..+.. +-+...|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666653 234555666666666666 56666666665544
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.67 E-value=0.044 Score=41.96 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN 318 (423)
Q Consensus 239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 318 (423)
|..++..+|.++++.|+.+....+++..-.-++.... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~-----------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK-----------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc-----------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 5678999999999999999999998765432222100 0000 1112345678888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc
Q 014507 319 AYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKE 358 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~ 358 (423)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 88888888888888887765 46766777787777755443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.66 E-value=0.036 Score=48.55 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA----RMCALLINAYQMAGQSQKAYTAFQNMRKAG--LEPSDKCVA 349 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~ 349 (423)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.- -......+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555556667777777777777764 3432 455566677777777777777777776521 011133444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 350 LILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
.+...+...|+.+.|..+++++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566677777777777776664
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.029 Score=44.46 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-----DGFMVGKEASC 384 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~ 384 (423)
.....++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+++.+ .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345667778889999999999999998853 44788999999999999999999999998753 39999887654
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.22 Score=43.58 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 014507 237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG---NSEGAQRVFEAIQFAGITPDARMC 313 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~ 313 (423)
+-|...|-.|...|...|+.+.|..-|....+...+ +...+..+..++.... ...++.++|+++.... .-|+.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 345556666666666666666666666665553221 3444444443333221 2335666666666542 2244455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555666666666666666666654
No 203
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.57 E-value=0.019 Score=49.20 Aligned_cols=117 Identities=11% Similarity=0.167 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 014507 167 EANIRDYTKIIHGYGK-----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR 241 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 241 (423)
+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+-.- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 4455555555544432 24455555555566666666666666666555432211 010 0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS-EGAQRVFEAIQ 302 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 302 (423)
.+....-.|-+ +-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11111111111 2234667777777777777777777777777776643 23444444443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.083 Score=46.32 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVM 248 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~ 248 (423)
|...+....+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554421110 1233444555555555555555555554321 0111222333334
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 014507 249 AYVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~ 268 (423)
.+...|+.+.|..+|+++.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555444
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=0.66 Score=42.12 Aligned_cols=291 Identities=12% Similarity=0.018 Sum_probs=190.1
Q ss_pred HHHHHHhccC--CCCCHHHHHHHHHHh---cCCChhhHHHHHHHHHh--cCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507 106 FVKQIICVSP--ETGNLSDLLAAWVRF---MKPRRADWLAVLKQLKL--MEHPLYLQVAELALLEESFEANIRDYTKIIH 178 (423)
Q Consensus 106 ~~~~ll~~~~--~~g~~~~a~~~~~~~---~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 178 (423)
.|..|-.++. -.|+-..|.++-.+. +..|......++.+=.. .|+.+.+.+-|+.|...- +.-.--...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHH
Confidence 3555544443 457777787777664 56777777777775543 799999999999987641 111111233344
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHHH---
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRS--YGSMVMAYVR--- 252 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~--~~~li~~~~~--- 252 (423)
..-+.|+.+.|.+.-+..-..-.. -...+...+...+..|+++.|+++.+.-++.. +.+++.- -..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 445778999998888887665332 35678889999999999999999998877643 4455432 2233333221
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVGSE-VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
..|...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+. .|....+...+ +.+.| +.+..
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~g--dta~d 313 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSG--DTALD 313 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCC--CcHHH
Confidence 2344555555444444 344432 2334457889999999999999999987 45555443333 23444 44555
Q ss_pred HHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHhcc
Q 014507 332 AFQNMRK-AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR-LGVVEEVEHVLREYGL 408 (423)
Q Consensus 332 ~~~~m~~-~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 408 (423)
-+++..+ ..++|| ..+-..+..+-...|++..|..--+...+ ..|....|-.|.+.-.- .|+-.++.+.+-+-..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555544 235665 56777778888889999888777666555 56888888888877654 4999999888776543
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.74 Score=42.27 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLG---EPLDKRSYGSMVMAYVR---AGMLDRGEVLLREMDAQEVYVGSEVYKAL 281 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 281 (423)
...++-+|-...+++...++.+.+...- +.-+...-....-++-+ .|+.++|.+++..+......++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556788888888888888887641 11122222233344455 77888888888886665566677788777
Q ss_pred HHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---HHH-HHCCC---
Q 014507 282 LRGYSMN---------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ-SQ---KAYTAF---QNM-RKAGL--- 341 (423)
Q Consensus 282 i~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~~m-~~~~~--- 341 (423)
...|-.. ...++|...|.+.-+. .||..+=-.+...+...|. .+ +..++- ..+ .+.|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 6665431 1345566666554432 2432221111111122222 21 222222 111 12222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 342 EPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
..|---+..++.++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 233445566677777777777777777777764
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.59 Score=40.08 Aligned_cols=132 Identities=10% Similarity=0.048 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL---- 282 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li---- 282 (423)
+.+.++..+.-.|.+.-....+++..+...+.++.....|++.-.+.||.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666667777777777777776555566667777777777777777777777666543333333333332
Q ss_pred -HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 283 -RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 283 -~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
..|.-.+++..|...+.+..... ..|...-|.=.-+..-.|+..+|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444556666666666666542 224444444444444456777777777777663
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.048 Score=37.13 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=24.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.|.+.+++++|.++++.+...+ +.+...|.....++...|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444444444444432 12333444444444444555555554444443
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.026 Score=39.10 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
|+.+...|...|++++|++.|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444444444443
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.42 Score=41.88 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++.... +..++..+|+++...+.. |..+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444432 223333333333332221 223344444444443322 3344444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444444444444444444
No 211
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.15 E-value=0.33 Score=43.39 Aligned_cols=130 Identities=13% Similarity=0.208 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC-
Q 014507 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR--AG----MLDRGEVLLREMDAQEV---YVGSEVYKALLRGYSMNGN- 290 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~- 290 (423)
+++...+++.|.+.|+..+..+|-+....... .. ....+..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567777778888777776665543333222 12 24457788888887543 2344556666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 291 ---SEGAQRVFEAIQFAGITPD-A-RMCALLINAYQMAGQ--SQKAYTAFQNMRKAGLEPSDKCVALIL 352 (423)
Q Consensus 291 ---~~~a~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 352 (423)
.+.++.+|+.+.+.|+..+ . ...+.++...-.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3567777888888777663 2 333333332222222 447788888888888887776665543
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=1.6 Score=43.17 Aligned_cols=287 Identities=10% Similarity=0.036 Sum_probs=166.9
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHhcCCC---hhhHHHHHHHHHhcCCch--HH-HHHHHHHhhcccCCCHHHHHHHHHHH
Q 014507 107 VKQIICVSPETGNLSDLLAAWVRFMKPR---RADWLAVLKQLKLMEHPL--YL-QVAELALLEESFEANIRDYTKIIHGY 180 (423)
Q Consensus 107 ~~~ll~~~~~~g~~~~a~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~--~a-~~~~~~~~~~~~~~~~~~~~~li~~~ 180 (423)
-..+|+-+...+.+..|+++-..+-.|. ...|.....-+.+..+.. .+ ..+-..+ .... ..-.+|..+.+-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHh-cccC-CCceeHHHHHHHH
Confidence 3446777788899999999988886666 345555555555543322 22 2222222 2222 3445677777777
Q ss_pred HccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHH
Q 014507 181 GKKMQIQNAENTLLAMKRRGFI----CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-----------EPLDKRSYGS 245 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~ 245 (423)
..+|+.+.|..+++.=...+-. .+..-+...+.-+...|+.+....++-.+...- .+.....|.-
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 7899999999888754433211 122345566777778888887777776665421 1111122222
Q ss_pred HHHH--------HHHcCChhHHHHHH--HHHHh----CCCCCCHHHHHHHHHHHHhCCCHH----------HHHHHHHHH
Q 014507 246 MVMA--------YVRAGMLDRGEVLL--REMDA----QEVYVGSEVYKALLRGYSMNGNSE----------GAQRVFEAI 301 (423)
Q Consensus 246 li~~--------~~~~~~~~~a~~~~--~~m~~----~~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m 301 (423)
+++- +...++-..+...| +...+ .+..| ......+.|.+..... +-+.+.+.+
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2221 01111111111111 11101 12222 2233334444443311 122222233
Q ss_pred HH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507 302 QF-AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK 380 (423)
Q Consensus 302 ~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 380 (423)
.. .|..-..-+.+--+.-+...|+-.+|.++-.+.+ -||...|..=+.+++..+++++.+++-+.++. +
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------P 744 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------P 744 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------C
Confidence 22 2333344455666777788899999999988876 58989999999999999999987777665442 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 381 EASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
.-|.-++..|.+.|+.++|.+++.+...
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 3466788999999999999999876643
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.98 E-value=0.064 Score=36.48 Aligned_cols=55 Identities=16% Similarity=-0.021 Sum_probs=29.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
.|.+.+++++|.++++.+...+.. +...|......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555555322 4444555555555555555555555555543
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.97 E-value=0.082 Score=45.53 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 014507 204 DQVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY 278 (423)
Q Consensus 204 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 278 (423)
|..+|-+.+..+... +..+-....++.|.+.|+..|..+|+.|++.+-+-. ..|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 666777666666543 445666666777777777777777777776654321 11111 11
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
....-.|= .+-+-+..++++|...|+-||..+-..++.++.+.+.
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 2334578889999999999999988888888877664
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.96 E-value=0.55 Score=45.17 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQE-VYVG-----SEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARM 312 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~ 312 (423)
+..+++...=.||-+.+++.+.+..+.+ +.-. .-.|+..+..++. ..+.+.|.++++.+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555566788888888887766532 2211 1245555554443 45678899999999875 677776
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH-HH
Q 014507 313 CALLI-NAYQMAGQSQKAYTAFQNMRKA--GL-EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT-LA 387 (423)
Q Consensus 313 ~~~li-~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l~ 387 (423)
|...- +.+...|++++|.+.|++.... .. +.....+--+...+.-.+++++|.+.|..+.+.. ..+..+|.- ..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 65543 5567789999999999976531 11 2234456666777788899999999999998862 123333332 33
Q ss_pred HHHHHcCCH-------HHHHHHHHHhccc
Q 014507 388 AWFKRLGVV-------EEVEHVLREYGLR 409 (423)
Q Consensus 388 ~~~~~~g~~-------~~A~~~~~~m~~~ 409 (423)
-++...|+. ++|.++|++.+.-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 344567877 8899999887654
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.94 E-value=1.4 Score=40.92 Aligned_cols=357 Identities=10% Similarity=0.011 Sum_probs=187.4
Q ss_pred hhcCchhhHhhhhhcccccccc-cCCC-c-ceeeeeeccccchHHHHHHhcCChhhhhhh-HHHHHHHHh--ccCCCCCH
Q 014507 47 RSLRSGPALEAIKAEDMGKTQV-KDDT-S-MFTWIQIGPNITEEQKQAISQFPRKMTKRC-KAFVKQIIC--VSPETGNL 120 (423)
Q Consensus 47 ~~~~~~~a~~~~~~~~m~~~g~-~~~~-~-~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~ll~--~~~~~g~~ 120 (423)
.++++++|..+ |.+..+..- .|.. . -..-+.++++|--+..+.......+..+.. ...|-.+.. .+-+.+.+
T Consensus 18 kq~~~~esEki--fskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKI--FSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHH--HHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 44567777666 666654322 2211 0 123355667776555544444444444311 122333332 22367888
Q ss_pred HHHHHHHHHh------cC------------CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC----CCHHHHHHHHH
Q 014507 121 SDLLAAWVRF------MK------------PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE----ANIRDYTKIIH 178 (423)
Q Consensus 121 ~~a~~~~~~~------~~------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 178 (423)
++|++.+..- -+ +|-.--+.....+...|++.+++.+...+...-++ .+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8887776432 11 22223345566778899999998888877665444 88888888665
Q ss_pred HHHccC---------------CHHHHHHHHHHHHHc------CCCCCHHHH-----------------------------
Q 014507 179 GYGKKM---------------QIQNAENTLLAMKRR------GFICDQVTL----------------------------- 208 (423)
Q Consensus 179 ~~~~~~---------------~~~~a~~~~~~m~~~------g~~p~~~~~----------------------------- 208 (423)
.++++= -++.+.-...+|... .+.|.....
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 555431 122333333333221 112221111
Q ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--
Q 014507 209 ---------TVMVVMYSKAGNLKMAEETFEEIKLLGEP----LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV-- 273 (423)
Q Consensus 209 ---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-- 273 (423)
..+...+.+ +.+++..+-+.+....+. .-..+|..++....+.++...|.+.+.-+.-.+...
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv 333 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV 333 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence 112222211 334444444333322111 123467777777777777777777776655422110
Q ss_pred -----------------CHHHH------------------------HHHHH---HHHhCCC-HHHHHHHHHHHHHCCCCC
Q 014507 274 -----------------GSEVY------------------------KALLR---GYSMNGN-SEGAQRVFEAIQFAGITP 308 (423)
Q Consensus 274 -----------------~~~~~------------------------~~li~---~~~~~g~-~~~a~~~~~~m~~~g~~p 308 (423)
|...| ..|+. -+-+.|. -++|.++++.+..-. .-
T Consensus 334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~y 412 (549)
T PF07079_consen 334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NY 412 (549)
T ss_pred hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cc
Confidence 11111 11111 1122233 556666666666531 12
Q ss_pred CHHHHHHHHH----HHHH---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCC
Q 014507 309 DARMCALLIN----AYQM---AGQSQKAYTAFQNMRKAGLEPSD----KCVALILSA--CEKENQLNRALEFLIDLERDG 375 (423)
Q Consensus 309 ~~~~~~~li~----~~~~---~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g 375 (423)
|..+-|.+.. +|.+ ...+.+-+.+-+-+.+.|+.|-. ..-+.|..| +...|++.++.-.-..+.+
T Consensus 413 D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-- 490 (549)
T PF07079_consen 413 DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-- 490 (549)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Confidence 4433333221 2222 12333444444444567877643 333444443 4568899888766666555
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 376 FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
+.|++.+|..+.-++....++++|.+++..++-++
T Consensus 491 iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 491 IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 78999999999999999999999999999987644
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.92 E-value=0.027 Score=39.00 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 345 DKCVALILSACEKENQLNRALEFLIDLERD----GF-MVG-KEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
..+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+..+|...|++++|.+++++-
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457888999999999999999999988743 22 122 667889999999999999999999874
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.90 E-value=0.32 Score=46.19 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=89.2
Q ss_pred HHHHccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507 178 HGYGKKMQIQNAENTLLAMK-RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 256 (423)
....-.++++++.+....-. -..+ ...-.+.++..+-+.|..+.|+.+-.+-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34455677777777664111 1112 24456777777777888887776653321 123445567777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
+.|.++.++. .+...|..|.+...+.|+++-|++.|.+... |..++-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7777654322 2566788888888888888888877776652 345666667777777777776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 337 RKAGLEPSDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
...|- ++....++.-.|++++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65542 44455555566777777666643
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.73 E-value=1.6 Score=40.08 Aligned_cols=168 Identities=14% Similarity=0.048 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRG---FICDQVTLTVMVVMYSK---AGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
..+...++-+|....+++...++++.+.... +.-+...-....-++.+ .|+.++|.+++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667889999999999999998762 11122333344556666 89999999999996666667889999
Q ss_pred HHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-H---HHHHHHH---H-HHHHCCC
Q 014507 244 GSMVMAYVR---------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN-S---EGAQRVF---E-AIQFAGI 306 (423)
Q Consensus 244 ~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~---~~a~~~~---~-~m~~~g~ 306 (423)
..+...|-. ....++|...|.+.-+.. ||.+.=-.+...+...|. . .+..++- . .+.++|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888887743 123667777777766543 443322122222222222 2 1233333 1 2223332
Q ss_pred C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 307 T---PDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 307 ~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
. .|---+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 24445678899999999999999999999875
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.71 E-value=0.49 Score=44.96 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
....+.++..+-+.|..+.|+++..+-..+ .....+.|+++.|.++.++. .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 445777888888888888888776553332 44556778888887665443 366788888888
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 329 (423)
..+.|+++-|++.|++..+ |..|+-.|.-.|+.+...++.+.....|- +|....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 8888888888888766543 56677777778888877777777776542 44555556666777777
Q ss_pred HHHHHH
Q 014507 330 YTAFQN 335 (423)
Q Consensus 330 ~~~~~~ 335 (423)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.70 E-value=0.61 Score=43.14 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=55.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRG-FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY-GSMVMAY 250 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~ 250 (423)
|...|+...+..-.+.|..+|-+..+.| +.+++..++++|..++ .|+...|.++|+--... -||...| +-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4444444444555555555555555554 3444455555555443 34444555555443332 1222222 2233344
Q ss_pred HHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
.+.++-+.|..+|+....+--. .-...|..+|+--..-|++..+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 4455555555555532221000 012345555555555555555444444444
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.57 E-value=0.85 Score=35.69 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=16.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK 217 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 217 (423)
+..+...+........++.+...+. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333334444444444444443332 233344444444443
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.56 E-value=1.2 Score=43.60 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
|..|.+-....|..+.|+..--.+.. ..+-|....|+.+.-+.+..+.+....+.|-++...
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 33444445567888888887665554 346677888888877777777777777777666554
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.54 E-value=0.73 Score=36.73 Aligned_cols=90 Identities=12% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 361 (423)
..-+...|++++|+.+|..+...+. -+..-|..|..++-..+++++|...|...-..+. -|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 3345567888888888887766432 2555566777777777888888888776654331 2333344556677777888
Q ss_pred HHHHHHHHHHHH
Q 014507 362 NRALEFLIDLER 373 (423)
Q Consensus 362 ~~a~~~~~~m~~ 373 (423)
+.|...|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888777766
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.49 E-value=0.91 Score=35.52 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
.++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555544443 2344444555555544
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.47 E-value=0.66 Score=43.35 Aligned_cols=68 Identities=9% Similarity=-0.104 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ--VTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
+.+...|+.+..+|.+.|++++|+..|++..+....... .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999999998887433111 45888999999999999999999998875
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.47 E-value=0.34 Score=45.16 Aligned_cols=66 Identities=12% Similarity=-0.077 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507 134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANI--RDYTKIIHGYGKKMQIQNAENTLLAMKRR 199 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 199 (423)
+...++.+..++...|++++|...++..++....... .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4478999999999999999999999888776533221 45888999999999999999999999886
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.45 E-value=0.83 Score=34.79 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 309 DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF 376 (423)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 376 (423)
+.......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555666666666666666666665432 55666666666667777776666666666666665
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.42 E-value=0.28 Score=44.66 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAI----QFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AGL-EPSDK 346 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~ 346 (423)
.|..|-+.|.-.|+++.|....+.= .+.|-+. .-..+..+..++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555566666666554321 1222111 223455566666666677666666655322 121 12233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 347 CVALILSACEKENQLNRALEFLIDLERD-----GFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
+..+|..+|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|..+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4445566666666666666665542211 112234556666777766676666666544
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.37 E-value=2.3 Score=39.50 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV-YKAL 281 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l 281 (423)
=..+|...|++-.+..-++.|..+|-+..+.| +.+++..++++|..++ .|+...|.++|+.-...- ||... -+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence 45678889999888889999999999999998 6778888999998776 578889999998655432 34333 3556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE 358 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 358 (423)
+..+.+.++-+.|..+|+..+.+ +..+ ...|..+|.--..-|+...|..+=++|.+ +.|...+.....+-|.-.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 77788899999999999966543 1223 56899999999999999999998888887 456666666666655543
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.34 E-value=1.1 Score=35.69 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=59.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
-+...|++++|..+|+-+.-.+ .-+..-|..|..++-..+++++|...|......+.. |...+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3446788888888887777654 234555666666666777788888877776655432 44455566677777788888
Q ss_pred HHHHHHHHHH
Q 014507 294 AQRVFEAIQF 303 (423)
Q Consensus 294 a~~~~~~m~~ 303 (423)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8877777765
No 232
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.29 E-value=1.8 Score=38.80 Aligned_cols=130 Identities=11% Similarity=0.177 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCC----HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSK--AGN----LKMAEETFEEIKLLGE---PLDKRSYGSMVMAYVRAGM- 255 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~- 255 (423)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..+|..+|+.|++... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777776553333222 222 5578899999988642 2344556555544 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 256 ---LDRGEVLLREMDAQEVYVGSE--VYKALLRGYSMNGN--SEGAQRVFEAIQFAGITPDARMCALLI 317 (423)
Q Consensus 256 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li 317 (423)
.+.++..|+.+.+.|...+.. ....++..+-.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 355778888888877765432 23333332222222 447888889999999888777776554
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.28 E-value=3.3 Score=40.73 Aligned_cols=187 Identities=14% Similarity=0.060 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----
Q 014507 201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE---- 276 (423)
Q Consensus 201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---- 276 (423)
++-+....-.+.+++.+.|.-++|.+.|-+. + .|. ..+.+|...++|.+|.++-+...-..+..-..
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA 918 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3446667777888888888888887776443 2 222 23455666777777776665433222210000
Q ss_pred ------HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCH----HHHHHH-HHHH----------HHcCCHHHHHH
Q 014507 277 ------VYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDA----RMCALL-INAY----------QMAGQSQKAYT 331 (423)
Q Consensus 277 ------~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~----~~~~~l-i~~~----------~~~g~~~~a~~ 331 (423)
-.---|..+.+.|+.-.|.+++.+|.+ ++.+|-. ....++ +.-+ -.+|..++|..
T Consensus 919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~ 998 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD 998 (1189)
T ss_pred HHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh
Confidence 011235567778888778888777754 3333321 111111 1111 13456666666
Q ss_pred HHHHHHHC-------CCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCH
Q 014507 332 AFQNMRKA-------GLEPSDKCVALIL--SACEKENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKRLGVV 396 (423)
Q Consensus 332 ~~~~m~~~-------~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~ 396 (423)
+++.-.-. +.---...|..+| .--...|.++.|..---.+.+. .+-|..+.|+.+.-+-+....+
T Consensus 999 lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 999 LLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred hhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 55443210 0111223344444 3344568888877765555543 5667788887666555444333
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.89 Score=41.54 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAW 389 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~ 389 (423)
.+++.+..+|.+.+++.+|++..+...+.+ ++|....-.=..++...|+++.|+..|+++.+. .|+ ...-+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 455667777778888888888877777654 456666666677777788888888888887774 443 4444445554
Q ss_pred HHHcCCHHH-HHHHHHHhcc
Q 014507 390 FKRLGVVEE-VEHVLREYGL 408 (423)
Q Consensus 390 ~~~~g~~~~-A~~~~~~m~~ 408 (423)
-.+.....+ ..++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444433 3566666643
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=1.7 Score=41.91 Aligned_cols=128 Identities=13% Similarity=0.001 Sum_probs=57.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRR-GFICD-----QVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYG 244 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 244 (423)
.++...+-.|+-+.+++.+.+..+. |+.-. ...|..++..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3455555555555555555544332 11110 1233333333332 23455556666555554 34444333
Q ss_pred HH-HHHHHHcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 245 SM-VMAYVRAGMLDRGEVLLREMDAQE---VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 245 ~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
.. .+.+...|++++|.+.|++..... .+.....+--+.-.+.-..++++|.+.|..+.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 22 222334555666666665443211 1112233444444555556666666666665553
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.92 E-value=0.76 Score=42.03 Aligned_cols=261 Identities=16% Similarity=0.043 Sum_probs=146.9
Q ss_pred ccCCCCCHHHHHHHHHHhcCCChh-------hHHHHHHHHHhcCCchHHHHHHHHHh--hc--cc-CCCHHHHHHHHHHH
Q 014507 113 VSPETGNLSDLLAAWVRFMKPRRA-------DWLAVLKQLKLMEHPLYLQVAELALL--EE--SF-EANIRDYTKIIHGY 180 (423)
Q Consensus 113 ~~~~~g~~~~a~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li~~~ 180 (423)
-+++.|+.+..+++|+..++.... .|..|-++|--.++++.|.+++..=+ .. |- .-...+...+.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 356778888888888776554333 34444455555566666655543211 00 00 00111222344444
Q ss_pred HccCCHHHHHHHHH----HHHHcCCCC-CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH---
Q 014507 181 GKKMQIQNAENTLL----AMKRRGFIC-DQVTLTVMVVMYSKAGN--------------------LKMAEETFEEIK--- 232 (423)
Q Consensus 181 ~~~~~~~~a~~~~~----~m~~~g~~p-~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--- 232 (423)
--.|.+++|...-. -..+.|-.. ....+-.+...|...|. ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666543221 122222110 12233345555554432 334555554322
Q ss_pred -HcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Q 014507 233 -LLGEP-LDKRSYGSMVMAYVRAGMLDRGEVLLREMD----AQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-- 303 (423)
Q Consensus 233 -~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 303 (423)
+.|-. .--..|..|...|.-.|+++.|....+.=. +-|-. .-...+..+.+++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 22211 112357777777778899999987765532 22221 2345778888899999999999998876432
Q ss_pred --CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 304 --AGI-TPDARMCALLINAYQMAGQSQKAYTAFQNMRK----A-GLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 304 --~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
-|- .....+..++...|.-..++++|..++.+-.. . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 22345556777888888888999888765432 1 1122346788889999999999998888776543
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=1.1 Score=39.85 Aligned_cols=192 Identities=10% Similarity=-0.035 Sum_probs=126.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSE 292 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 292 (423)
...|++.+|-..++++.+. .+.|...+..--.+|.-.|..+.-...+++.... +.+-..+.-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888998899998876 4668888888889999999999988888888754 23222233334445566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA---GLEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
+|++.-++..+-+ +-|.-.-.+....+-..|++.++.++..+-... +.-.-...|-...-.+...+.++.|.++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888877654 346667778888888899999999987765432 111112234444445566788999999998
Q ss_pred H-HHHCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 370 D-LERDGFMVGK---EASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 370 ~-m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
. |.+.--+.|. ..|.-+.-...+...+.+..++-+-+.++
T Consensus 272 ~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~ 315 (491)
T KOG2610|consen 272 REIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDK 315 (491)
T ss_pred HHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcch
Confidence 5 4444223333 22232333344444555555544444443
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.81 Score=41.81 Aligned_cols=91 Identities=14% Similarity=0.002 Sum_probs=49.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRR-----GFIC---------DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS 242 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 242 (423)
.+.+.+.|++..|..-|++.... +..+ -..++..+.-.|.+.+++..|+..-++....+ ++++-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45678888998888888876542 1111 11234444445555555555555555555443 334444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~ 268 (423)
.-.-..+|...|+++.|...|+++++
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44444555555555555555555555
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.70 E-value=0.53 Score=45.48 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=129.7
Q ss_pred hhhhcCchhhHhhhh-------hcccccccccCCCcceeeeeeccccchHHHH---HHhcCChhhhhhhHHHH-HHHHhc
Q 014507 45 WSRSLRSGPALEAIK-------AEDMGKTQVKDDTSMFTWIQIGPNITEEQKQ---AISQFPRKMTKRCKAFV-KQIICV 113 (423)
Q Consensus 45 ~~~~~~~~~a~~~~~-------~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~---~a~~~~~~m~~~~~~~~-~~ll~~ 113 (423)
|+.+|.+++|..+.+ ++++....+.. ..++.--.+|.+-+.. ....-++++.++...-- -.+...
T Consensus 566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeA----L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~ 641 (1081)
T KOG1538|consen 566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEA----LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV 641 (1081)
T ss_pred hhhccchhhhhcccccceecchHHHHHHHHHhh----hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 377777777765544 55555544422 5566667777753332 22222344443222111 122345
Q ss_pred cCCCCCHHHHHHHHHHhcCCCh--hhHHH-----HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507 114 SPETGNLSDLLAAWVRFMKPRR--ADWLA-----VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 114 ~~~~g~~~~a~~~~~~~~~p~~--~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (423)
++-.|++.+|-++|.+-...+. ..|+- ...-+...|..++-+.+.+.- .....|+.-=.+....+..+|+.
T Consensus 642 ~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR--A~WAr~~kePkaAAEmLiSaGe~ 719 (1081)
T KOG1538|consen 642 FAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR--ADWARNIKEPKAAAEMLISAGEH 719 (1081)
T ss_pred HHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHhhhcCCcHHHHHHhhcccch
Confidence 6667888888888877533222 11111 111222233333322222110 11111111112234445566666
Q ss_pred HHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507 187 QNAENTLL------AMKRRGFIC---DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257 (423)
Q Consensus 187 ~~a~~~~~------~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 257 (423)
++|..+.- -+.+.+-+. +..+...+...+.+...+..|-++|.+|-+. ..++......++|+
T Consensus 720 ~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~ 790 (1081)
T KOG1538|consen 720 VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWD 790 (1081)
T ss_pred hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccch
Confidence 66654421 111111111 4456666666666777788899999887542 24666777889999
Q ss_pred HHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 258 RGEVLLREMDAQEVYVGS-----------EVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
+|..+-+...+- .||. .-|.-.-.+|.++|+-.+|.++++++....
T Consensus 791 eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 791 EAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 999888776552 2222 234555678888899999999988887543
No 240
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=3.5 Score=37.96 Aligned_cols=277 Identities=9% Similarity=-0.064 Sum_probs=143.3
Q ss_pred HHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC
Q 014507 109 QIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ 185 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 185 (423)
..-..+.+..++..|+..+... .-||. .-|..=...+...++++++.--.+.-++... -....+.-.-+++...++
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 3445566778888888888776 33544 3455555566667777766444333222211 111234444555666666
Q ss_pred HHHHHHHHHHHHHc----------C------CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 186 IQNAENTLLAMKRR----------G------FICDQVTLTVM-VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 186 ~~~a~~~~~~m~~~----------g------~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
..+|.+.++.-... . -+|.-.+|..+ ...+...|+.++|...-....+.. ..+....-.--.
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccc
Confidence 66676666532200 0 01222233322 233445677777766666655542 112222222222
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVY-------------KALLRGYSMNGNSEGAQRVFEAIQFA---GITPDARM 312 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~ 312 (423)
++.-.++.+.+...|++....+ |+...- ..=-+-..+.|++..|.+.|.+.... +..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3334566777777777776654 332211 11122345567777777777776642 33445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMV-GKEASCTLAAWF 390 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~ 390 (423)
|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...++++.|++-++...+..-.+ ...++.....++
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 66666677777777777777666654 2221 1222222333444567777777777666542222 233444444444
Q ss_pred H
Q 014507 391 K 391 (423)
Q Consensus 391 ~ 391 (423)
-
T Consensus 368 k 368 (486)
T KOG0550|consen 368 K 368 (486)
T ss_pred H
Confidence 3
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.45 E-value=2.1 Score=34.44 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 226 ETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 226 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
++.+.+.+.+++|+...|..++..+.+.|.+. .+..+...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444445555555555555555555555532 23333344444444433333322221 112222222222211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 306 ITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344455555555555555555543
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=3.2 Score=41.70 Aligned_cols=178 Identities=14% Similarity=0.116 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMV----VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
.....-++.+.+...++.|..+.+. .+. |..+...+. +.+.+.|++++|...|-+-... ++|. .+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 3455678888888888888876543 333 344444444 4455789999999888776543 2332 24
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
|.-|.......+-...++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+.-. .|..- .-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChH
Confidence 55566666777778888899999887 77788899999999999999888877665 44331 1234567777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
++|..+-..... +......+ +-..+++++|.++++.+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 888877665542 23333444 34578899999998764
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=2.9 Score=35.66 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
..|.....+|....++++|...+.+..+. .+-+...|. ..+.++.|.-+.+++.+.. --+..|+--...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 34555667777888888888776665532 121222222 1233455666666665431 1233466666677
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHHcCC
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF---AGI--TPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~--~p~~~~~~~li~~~~~~g~ 325 (423)
..+|.++.|-..+++.-+. ...-++++|+++|++... .+- .--...+...-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777766666655431 111233444444443221 100 0112233444455566666
Q ss_pred HHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHH
Q 014507 326 SQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERD---GFMVGKEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 326 ~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~g~~~ 397 (423)
+++|-..+.+-.. -.--|+ -..|...|-.+....++..|.+.++.-.+. .-+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 6665554443221 111122 233555555556666777777777764433 1223456666777766 457777
Q ss_pred HHHHHH
Q 014507 398 EVEHVL 403 (423)
Q Consensus 398 ~A~~~~ 403 (423)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 766654
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=0.77 Score=39.73 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGI--TPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPS-DKCVALIL 352 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li 352 (423)
.|+.-+..+ +.|++..|..-|....+..- .-....+--|..++...|++++|..+|..+.+. +-.|- +..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 444444433 33446666666655554321 011223334555556666666666666555542 11121 23444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 014507 353 SACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555556666666666655553
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.26 E-value=3.2 Score=37.50 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=58.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCCHHHH---
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLG-----EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYVGSEVY--- 278 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~--- 278 (423)
+-.++...+.++++++.|+...+-. -.....+|-.|-+.|.+..|+++|.-+..+..+ .++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444555555666666665554311 111223556666666666666666555444332 1222001111
Q ss_pred --HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 279 --KALLRGYSMNGNSEGAQRVFEAIQF----AGITP-DARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 279 --~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
..|.-++...|+...|.+.-++..+ .|-.+ .......+.+.|...|+.|.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2223344555555555555444332 22222 223344455566666666666655554
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.25 E-value=1.9 Score=32.97 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
+...+...+......|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++.+++++--++|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455677788889999999999999998764 468888999999999999999999999999888775
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.17 E-value=0.85 Score=40.04 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKA 280 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 280 (423)
++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44445555555555555555555555543 33555555555555555555555555555443 344444444333
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.14 E-value=4.5 Score=37.01 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=162.2
Q ss_pred CCCCCHHHHHHHHHHhc-CCChhh--HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507 115 PETGNLSDLLAAWVRFM-KPRRAD--WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~~-~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
.-.|+++.|.+-|+.|. .|.... ...|.-..-+.|..+.+..+-+...... +.-...+...+...+..|+|+.|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 35799999999999995 454432 2334444456777777776665443332 2334678889999999999999999
Q ss_pred HHHHHHHcC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHH
Q 014507 192 TLLAMKRRG-FICDQVT--LTVMVVMYSK---AGNLKMAEETFEEIKLLGEPLDKRS-YGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 192 ~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~ 264 (423)
+++.-+... +.++..- -..|+.+-.. ..+...|...-.+..+ +.||... --.-..++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 999877653 3444432 2233333221 2345556555555444 3566543 3345577889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
.+-+....|+. . .+..+.+.|+. +..=++...+ ...+| +..+--.+..+-...|++..|..--+.... ..
T Consensus 288 ~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~ 359 (531)
T COG3898 288 TAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EA 359 (531)
T ss_pred HHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hC
Confidence 99998766653 2 22234455553 2222222221 11234 566777788888899999888776665554 57
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 014507 343 PSDKCVALILSACE-KENQLNRALEFLIDLERD 374 (423)
Q Consensus 343 p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 374 (423)
|....|..|...-. ..|+-.++...+.+..+.
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888888877644 459999999999888765
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.00 E-value=3.8 Score=38.79 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+-..+..++.+.|+.++|.+.+++|.+..-. -.......++.++...+.+.++..++.+-.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344555556666667676666666543111 1233455566666666666666666666543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=2.3 Score=36.86 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YV-GSEVYKALL 282 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li 282 (423)
.|+.-+..+ +.|++..|...|....+... .-....+--|..++...|++++|..+|..+.+.-. .| -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 44445555555555554320 01112233355555555555555555555544211 11 123444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.75 E-value=1.1 Score=39.43 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL-----LGEPLDKRSYGS 245 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 245 (423)
.++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 46777889999999999999999999998544 888999999999999999999999998876 688888887776
Q ss_pred HHHH
Q 014507 246 MVMA 249 (423)
Q Consensus 246 li~~ 249 (423)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.74 E-value=5.5 Score=36.62 Aligned_cols=65 Identities=18% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMV---GKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
...++..+...+.+.|.++.|...+..+...+... .+.+.-.-.+.+...|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777777777777777776543111 334444556666677777777777766655
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.50 E-value=12 Score=39.55 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK--CVALILSA 354 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~ 354 (423)
.|.+..+.+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++.. .-|.. +-..|+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence 3444444555566677776666654421 2346677778888888888777652 11221 22556777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+...+++-+|-++..+.... ....+..|++...|++|..+...-.
T Consensus 1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77888888888777766543 2344555666777777777765544
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=5.5 Score=35.70 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
.|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...+++..
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444444444443 22244444444444444444444444444443
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=1.6 Score=43.72 Aligned_cols=247 Identities=11% Similarity=-0.000 Sum_probs=145.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANI--RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY 215 (423)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 215 (423)
...-+..+.+...+..|..+.. ..+..++. .......+.+.+.|++++|..-+-+-... +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 3344555555555555544432 23322221 22333444566789999998877665443 2322 256677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 295 (423)
..+....+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7788888899999999999965 77777889999999999998888776655 3322 112445666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG 375 (423)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 375 (423)
.+-..... +......+ +-..|++++|++.+..+.-...-+....|...+ . ...+++...++-+.....
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHhhc
Confidence 66555442 22333333 345689999999998764222222223333322 2 345666666666655443
Q ss_pred CCcCHHHHHHHH-----HHHHHcCCHHHHHHHHHHhccc
Q 014507 376 FMVGKEASCTLA-----AWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 376 ~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+++.......+ ....-.++++....+++.|.+.
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 333322222222 2234466777777777766543
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.40 E-value=2.7 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
+..|+.+.|++.|.+....-.+ ....||.-.+++.-.|+.++|++=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555554443222 344555555555555555555555544443
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.32 E-value=6.1 Score=35.82 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=64.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQE-----VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDARMCAL 315 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~ 315 (423)
++-.++...+.++++++.|+...+.. ......+|..|-..|.+..|.++|.-+..+..+ .++..-..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555556666666666654321 111234666666666666666666655544322 232222222332
Q ss_pred H-----HHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 316 L-----INAYQMAGQSQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 316 l-----i~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
+ .-++...|+...|.+.-++..+ .|-+|. ......+.+.|...|+.+.|..-++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2345556666666666665543 232221 2233444555556666666655555543
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.94 E-value=3.2 Score=31.63 Aligned_cols=86 Identities=22% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhCCCH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSE---VYKALLRGYSMNGNS 291 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~---~~~~li~~~~~~g~~ 291 (423)
+..|+++.|++.|.+....- +-....||.-..++--.|+.++|+.=+++..+. |-. +.. .|..-...|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 34455555555554444432 223444555555555555555555444444432 111 211 122222334445555
Q ss_pred HHHHHHHHHHHH
Q 014507 292 EGAQRVFEAIQF 303 (423)
Q Consensus 292 ~~a~~~~~~m~~ 303 (423)
+.|..=|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 555555544443
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=4.3 Score=32.69 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=23.2
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
+.+..++|+.-|.++.+.|...= .-.--.+.......|+...|...|+++-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44555566666666655544310 00111112233445555555555555544
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.70 E-value=9.4 Score=36.31 Aligned_cols=80 Identities=8% Similarity=0.012 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLIN 318 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 318 (423)
.+-..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-.+...+. -..+|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33445666677889999999999999865322 244578889999999999999999999876533222 3345666544
Q ss_pred HH
Q 014507 319 AY 320 (423)
Q Consensus 319 ~~ 320 (423)
-+
T Consensus 340 ka 341 (539)
T PF04184_consen 340 KA 341 (539)
T ss_pred HH
Confidence 33
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=6.7 Score=34.58 Aligned_cols=143 Identities=14% Similarity=0.098 Sum_probs=74.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 257 (423)
......|++.+|..+|+........ +...--.+...|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777776665333 344455567777777777777777776654321111222223344444444444
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC
Q 014507 258 RGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAG 324 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g 324 (423)
+...+-++.-.. | |...-..+...+...|+.+.|.+.+-.+.++.. .-|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443332 2 445555566666666666666665555443211 123344444555444444
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.67 E-value=6.1 Score=34.07 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
...|+.-+.. .+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|...+++............|...|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445544444 47788888888888877643 12234455566667777788888888877777654333333455555
Q ss_pred HHHH
Q 014507 283 RGYS 286 (423)
Q Consensus 283 ~~~~ 286 (423)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.65 E-value=5.3 Score=33.34 Aligned_cols=200 Identities=15% Similarity=0.028 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 445555556666666666666666655542 122244455555555555666666666666665543222 111222222
Q ss_pred -HHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 014507 249 -AYVRAGMLDRGEVLLREMDAQEV--YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAG 324 (423)
Q Consensus 249 -~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 324 (423)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+-..+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 45566666666666666544211 1122333333333455556666666666555432 11 2445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 325 QSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
+++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666555542 222 23333333333344455555555555544
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.64 E-value=4.6 Score=32.57 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 190 ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 190 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
.+.+..+.+.|++|+...+..+++.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555556677888888888888888888875543 455555666666665555543332 233444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 270 EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 270 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
=- ..+..++..+...|++-+|.++.+..... +......++.+-.+.++...-..+++-..+
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10 14566677778888888888887765321 222234556666666666555555554444
No 265
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.47 E-value=5.8 Score=34.91 Aligned_cols=121 Identities=7% Similarity=0.044 Sum_probs=73.3
Q ss_pred cCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH
Q 014507 166 FEANIRDYTKIIHGYGKK-M-QIQNAENTLLAMK-RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL-GEPLDKR 241 (423)
Q Consensus 166 ~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~ 241 (423)
+-.|..+-..+++..... + ....-.++.+-+. +.|-.++..+...++..+++.+++.+-.++++.-... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 445666666666665552 1 2222233333333 2345567777777788888888888887777776654 4455777
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLRE-----MDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~~ 286 (423)
.|..+|..-...||..-..++..+ +++.++..+...-..+-..+.
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 788888888888887666666554 234556656555555544443
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.42 E-value=2.7 Score=34.41 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
+..+...|.+.|+.++|.+.|.++.+....|. ...+-.+|+.+...+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444455555555555555555544322222 2233444444444455554444444443
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.36 E-value=4.7 Score=32.09 Aligned_cols=91 Identities=10% Similarity=-0.159 Sum_probs=48.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 257 (423)
.-.+.++.++++.+++.+.-..+. |...++. ...+.+.|++++|.++|+++.+.+ |.......|+..|.....-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 344566777777777777665222 1223333 333456777888888887776543 33334444555554443333
Q ss_pred HHHHHHHHHHhCCCCC
Q 014507 258 RGEVLLREMDAQEVYV 273 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p 273 (423)
.-...-+++.+.+-.|
T Consensus 95 ~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 95 SWRRYADEVLESGADP 110 (160)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 3333344455554433
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.30 E-value=5.9 Score=33.04 Aligned_cols=199 Identities=14% Similarity=-0.029 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 014507 137 DWLAVLKQLKLMEHPLYLQVAELALLEE-SFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV-M 214 (423)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~ 214 (423)
.+......+...+....+.......... ........+......+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3444444444444444444443333321 222333344444444444445555555555544432222 111111122 4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE 292 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 292 (423)
+...|+++.|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...++.+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4455555555555555433110 01222232333333444455555555555444322112334444444555555555
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.|...+...... .|+ ...+..+...+...+..+++...+....+
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555544432 121 22222222233344445555544444443
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.16 E-value=0.63 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
++..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.15 E-value=2.2 Score=34.98 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
..+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777777777777777777666533332 23455566666667777776666665544
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.00 E-value=0.92 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRR 199 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 199 (423)
++..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.92 E-value=9.2 Score=37.86 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=38.7
Q ss_pred HcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507 217 KAGNLKMAEETFEEIKL-------LGEPLDKRSYGSMVMAYVRAG-----MLDRGEVLLREMDAQEVYVGSEVYKALLRG 284 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 284 (423)
...|++.|+.+|+...+ .| ......-+..+|.+.. +.+.|..++.+..+.|.+ +....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 44456666666665554 33 2223444455554432 334455555555555432 33222222222
Q ss_pred HHh-CCCHHHHHHHHHHHHHCC
Q 014507 285 YSM-NGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 285 ~~~-~g~~~~a~~~~~~m~~~g 305 (423)
... ..+...|.++|......|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcC
Confidence 222 234455555555555554
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.82 E-value=0.38 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 382 ASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+|..|.+.|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678889999999999999999873
No 274
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=11 Score=34.88 Aligned_cols=173 Identities=10% Similarity=-0.035 Sum_probs=112.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HH------
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM--YSKAGNLKMAEETFEEIKLLGEPLDKRSYG---SM------ 246 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l------ 246 (423)
.++.-.|+.++|.+.-....+..- ...+...+++ +.-.++.+.|...|++....+ |+...-. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 345567888888888877777632 2223333333 334677888888888877653 3332211 11
Q ss_pred ----HHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH
Q 014507 247 ----VMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR---MCALL 316 (423)
Q Consensus 247 ----i~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l 316 (423)
.+-..+.|.+..|.+.|.+.+.. ++.|+...|........+.|+.++|+.--+...+ .|.. .|..-
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHH
Confidence 22235789999999999998864 4567778888888899999999999988887774 2332 23333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 014507 317 INAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKEN 359 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 359 (423)
..++...++|++|.+-|+...+..-.+ ...++.....++-++.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 345666788999988888876643222 3455555555555443
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.46 E-value=5.6 Score=31.02 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=51.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
.....+.|++++|.+.|+.+..+-.. -....--.++.+|.+.+++++|...+++..+........-|-..+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445778888888888888876211 133445567888888888888888888888865333334455555555443
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.91 E-value=11 Score=33.48 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 207 TLTVMVVMYSKAGNLK---MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
++..++.+|...+..+ +|.++++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655533 3444555554432 212444545555555566666667777666654
No 277
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.89 E-value=2.5 Score=30.23 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
.-++.+-++.+....+.|++......+++|.+.+++..|.++++-.+.+ ...+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3355555666666677788888888888888888888888888776643 2224445665553
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.87 E-value=0.69 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEE 230 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~ 230 (423)
|..|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555556666666655555
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=90.69 E-value=15 Score=34.70 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
+|.++-+...+.+ .-|......+..+....|+++.|..+|++... +.|| ..+|......+.-.|+.++|.+.+++.
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444332 22444444444444444445555555555444 2343 223333333334445555555555553
Q ss_pred H
Q 014507 372 E 372 (423)
Q Consensus 372 ~ 372 (423)
.
T Consensus 399 l 399 (458)
T PRK11906 399 L 399 (458)
T ss_pred h
Confidence 3
No 280
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.65 E-value=5 Score=29.07 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
+..+-++.+....+.|++......+++|.+.+++..|+++++-.+.+ ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666778888888888888888888888888888887765 2232336666654
No 281
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=3.8 Score=36.33 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507 235 GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE---VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR 311 (423)
Q Consensus 235 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 311 (423)
|......+...++..-....+++.+...+-++...- ..|+. +-...+..+. .-+++++..++..=...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334445555556655555667777777776665531 11221 1122222222 235667777777777778888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
+++.+|+.+.+.+++.+|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877777766543
No 282
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.52 E-value=11 Score=32.63 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS 245 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 245 (423)
|-...|+.-+. -.+.|++++|.+.|+.+..+.+- -...+.-.++.++.+.++++.|....++....-......-|-.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 34455655444 45889999999999999876321 1344556677888899999999999999988543333334555
Q ss_pred HHHHHHHc-------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 246 MVMAYVRA-------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN 318 (423)
Q Consensus 246 li~~~~~~-------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 318 (423)
-|.+.+.- .|...+.+-+..+.+ ++.-|=...-...|..-+..+... =...=..+.+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iar 175 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIAR 175 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHH
Confidence 55555421 222233333333322 111111111112222222222210 0000123456
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 319 AYQMAGQSQKAYTAFQNMRKA--GLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
-|.+.|.+..|..-+++|.+. .-.-....+-.+..+|...|-.++|...-+-+...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 778888888888888888774 11112345666777788888877777766655443
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.14 E-value=7.7 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=33.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 014507 182 KKMQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG 235 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (423)
..++.+++..+++.|.-..+. +...++-.++ +...|++++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 467788888888887665222 2333444333 457788888888888887754
No 284
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.78 E-value=4.1 Score=36.09 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=64.3
Q ss_pred hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507 163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR---GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239 (423)
Q Consensus 163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 239 (423)
..|.+....+...++..-....+++.++..+-+++.. -..|+...+ ++++.+ ..-+.++++.++..=.+-|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 3455555556666666666667777777776666543 112222111 122222 23356677777777777777778
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888887777777776666543
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=15 Score=32.54 Aligned_cols=143 Identities=10% Similarity=0.096 Sum_probs=80.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507 213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE 292 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 292 (423)
......|++.+|..+|+......- -+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344567788888888877776542 2345556677777888888888888877655432222222223344444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC
Q 014507 293 GAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL-EPSDKCVALILSACEKEN 359 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g 359 (423)
+...+-...-. .| |...-..+...+...|+.++|++.+-.+.+... .-|...=..++..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444443 34 555556666777777777777766555544211 122333344444444444
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.39 E-value=4 Score=33.82 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=49.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHH
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD---GFMVGKEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~g~~~ 397 (423)
.+.|+ +.|.+.|-.+...+.--++..... +..|....+.+++..++.+..+. +-.+|+..+.+|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44444 467777777776664434444433 44444466777777777776654 33677788888888888888877
Q ss_pred HHH
Q 014507 398 EVE 400 (423)
Q Consensus 398 ~A~ 400 (423)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 287
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.16 E-value=27 Score=35.29 Aligned_cols=134 Identities=6% Similarity=-0.019 Sum_probs=66.2
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhh-hhH-HHHHHHHhccCCCCCHHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTK-RCK-AFVKQIICVSPETGNLSDL 123 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~-~~~-~~~~~ll~~~~~~g~~~~a 123 (423)
+++|++..+..+ ..++...-+. +...|-.+.........+.+..++++-+. |-. ..-...+..+.+.++++..
T Consensus 44 ~~~g~~~~~~~~--~~~l~d~pL~---~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQL--MPTLKDYPLY---PYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHH--HHhccCCCcH---hHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 788887777666 3333322222 22344444444333333444444444433 111 1122233344467788877
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507 124 LAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 124 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (423)
++ |..-...+..--.....+....|+.+.+......+-..| ...+..++.++..+.+.|.+
T Consensus 119 ~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 119 LA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 77 332233444444566667777777665544444333333 22344566666666655543
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.46 E-value=7.7 Score=28.15 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
..+-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444555555566666666666667777777777777766666543
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.44 E-value=38 Score=36.04 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=43.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 014507 318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVE 397 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 397 (423)
..+...+.+++|.-.|+..-+ ..-.+.+|...|++.+|..+..++.... .--..+-..|+.-+...|+.-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccch
Confidence 333445566666655554321 2234566666677777766666554221 011112245666777777777
Q ss_pred HHHHHHHHhc
Q 014507 398 EVEHVLREYG 407 (423)
Q Consensus 398 ~A~~~~~~m~ 407 (423)
+|-++..+-.
T Consensus 1017 eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1017 EAAKILLEYL 1026 (1265)
T ss_pred hHHHHHHHHh
Confidence 7777766543
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.37 E-value=17 Score=32.06 Aligned_cols=137 Identities=11% Similarity=0.129 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 256 LDRGEVLLREMDA-QEVYVGSEVYKALLRGYSMN-G-NSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 256 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
+.+|+++|+...- ..+--|..+...+++..... + ....-.++.+-+.. .|-.++..+.-.+|..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542221 22344666666666665552 2 22233344444443 2346677777788888888888888888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHH
Q 014507 332 AFQNMRKA-GLEPSDKCVALILSACEKENQLNRALEFLID-----LERDGFMVGKEASCTLAAWFKR 392 (423)
Q Consensus 332 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~l~~~~~~ 392 (423)
+|+.-... +..-|...|..+|+.....|+..-..++.++ +++.|+..+...-..+-+.+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 88877654 4455777788888888888887666555553 2344566666665555555443
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.14 E-value=1.7 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555544443
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=88.00 E-value=25 Score=33.39 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=68.8
Q ss_pred HHH--HHHHHHHHcc-----CCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 014507 171 RDY--TKIIHGYGKK-----MQIQNAENTLLAMKRR-GFICD-QVTLTVMVVMYSK---------AGNLKMAEETFEEIK 232 (423)
Q Consensus 171 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 232 (423)
..| ...+++.... ...+.|..+|.+.... .+.|+ ...|..+...+.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555555442 2345677778777721 22333 3333333222211 122345555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
+.+ ..|......+..+....++++.|...|++....+.. ...+|......+.-+|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 554 446666666666666666677777777766664332 233444444445556666666666666443
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.97 E-value=15 Score=30.99 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=15.2
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhcCCC
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRFMKPR 134 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~~~p~ 134 (423)
.+|-+--.+...|+++.|.+.|+...+.|
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 44444445555566666666665554433
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.95 E-value=12 Score=29.82 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=9.6
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 014507 321 QMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~ 338 (423)
...|+|.+|..+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 445555555555555544
No 295
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.38 E-value=11 Score=35.79 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHhcCCChhh--HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHH--HHHHHHHHHHccCCHHHHH
Q 014507 115 PETGNLSDLLAAWVRFMKPRRAD--WLAVLKQLKLMEHPLYLQVAELALLEESFEANIR--DYTKIIHGYGKKMQIQNAE 190 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~ 190 (423)
+..|+.+.+..+++.+..|+... ..+.+..++..|+.+.+ +.+.+.|..|+.. .....+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 34577777777777666555422 23445555566665544 3344555544432 1223455556778877766
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507 191 NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR---SYGSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 191 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
.+++.-....-..+..-. +.+...+..|+.+-+ +.+.+.|..|+.. -.+. +...+..|+.+.+..++
T Consensus 86 ~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll---- 155 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGM-TPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLI---- 155 (413)
T ss_pred HHHHcCCcccccccCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----
Confidence 555432111000011112 233334456665433 4444555544332 2233 33344566655444443
Q ss_pred hCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 268 AQEVYVGS---EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM---CALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 268 ~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
+.|..++. .-.+ .+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+- .+.+.+.|.
T Consensus 156 ~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~ga 226 (413)
T PHA02875 156 DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGA 226 (413)
T ss_pred hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCc
Confidence 33433221 1112 233344456654 3344455555554322 1234443455566543 333344554
Q ss_pred CCC
Q 014507 342 EPS 344 (423)
Q Consensus 342 ~p~ 344 (423)
.++
T Consensus 227 d~n 229 (413)
T PHA02875 227 DCN 229 (413)
T ss_pred Ccc
Confidence 444
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.06 E-value=29 Score=33.26 Aligned_cols=179 Identities=9% Similarity=0.075 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
|....-+++..+.++-.+.-++.+..+|..-| -+...|..++.+|..+ ..+.-..+|+++.+.... |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677777777777777888888887765 3667777788888777 556777777777776554 4444444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITP-----DARMCALLINAYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEK 357 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~ 357 (423)
-|-+ ++.+.+...|.+....=++. =...|.-++.. -..+.+..+.+...+.+ .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77777777777766542211 12245554432 13456666666666655 3333344555666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507 358 ENQLNRALEFLIDLERDGFMVGKEASCTLAAWF 390 (423)
Q Consensus 358 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 390 (423)
..++++|.+++..+.+.. .-|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 777888888877776652 23444444444443
No 297
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.89 E-value=13 Score=29.03 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGI--TPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
...+.|++++|.+.|+.+..+-. .-....--.++.+|.+.|++++|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455677777777777665410 113344455667777777777777777777663
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=15 Score=35.82 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=58.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 295 (423)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45566666666554432 455677777777777777777776655444 334555666666666555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
.+-....+.|. . |....+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 55555555442 1 2333455566777777766554
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.54 E-value=13 Score=30.82 Aligned_cols=73 Identities=18% Similarity=0.053 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507 222 KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 222 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~ 295 (423)
+.|.+.|-++...+..-++.....|...|. ..|.+++..++.+..+. +-.+|+..+.+|++.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766664445544444444444 55667777777666542 33566777777777777777777664
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.47 E-value=16 Score=29.61 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR-SYGSMVM 248 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~ 248 (423)
..|...++. .+.+..++|+.-|..+.+-|..--+ ...-.......+.|+...|...|++.-...-.|-.. -...|=.
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 344444443 4566777777777777776544211 111223344556777777777777776643333322 1112222
Q ss_pred H--HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 249 A--YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 249 ~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
+ +..+|-++++....+.+-..+-+.-...-..|--+-.+.|++.+|...|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2 3355667776666666655544444445556666666777777777777766653
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.24 E-value=37 Score=33.66 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhcccCCCHH-HHHHHHHH-HHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC---
Q 014507 152 LYLQVAELALLEESFEANIR-DYTKIIHG-YGKKMQIQNAENTLLAMKR-------RGFICDQVTLTVMVVMYSKAG--- 219 (423)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g--- 219 (423)
..+..+++...+.|..-... .-.....+ +....+.+.|...|+...+ .| +......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 45566666666655321111 11122223 4567899999999999877 55 3346667777887743
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCCHHHH
Q 014507 220 --NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR-AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS--MNGNSEGA 294 (423)
Q Consensus 220 --~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a 294 (423)
+.+.|..+|.+..+.| .|+....-..+..... ..+...|.+.|...-+.|.. ...-+..++.... -..+.+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 6677999999999887 4455544333332222 24677999999999998865 2222222222222 33478889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
..++.+..+.| .|...---..+..+.. ++++.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 99999988887 3332222233334444 788888888888877664
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.11 E-value=2.3 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355556666666666666666666554
No 303
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.08 E-value=25 Score=32.63 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 268 (423)
.+.-+...|..+|+++.|++.|-+.++-- .+.....|-.+|..-.-.|+|..+.....+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34445555556666666666665543321 011222333444444445555555555444443
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.81 E-value=0.25 Score=38.91 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=40.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
+++.+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... + .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 344445555555555555555554433445555566666666555555555544111 1 112234455555555
Q ss_pred HHHHHHHHHH
Q 014507 361 LNRALEFLID 370 (423)
Q Consensus 361 ~~~a~~~~~~ 370 (423)
++.+..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.56 E-value=14 Score=36.06 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=49.1
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
+.|+++.|.++..+. -+..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555554443221 1444566666666666666666666655442 2344555555555555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
+-....+.|. - |...-++...|+++++.+++.
T Consensus 714 la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 4444444442 1 222333445566666665554
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.41 E-value=1.2 Score=24.89 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 014507 310 ARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~a 329 (423)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444433
No 307
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.41 E-value=17 Score=31.94 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=9.0
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m 336 (423)
|-.|.+.|++..+.++-..-
T Consensus 125 ILLysKv~Ep~amlev~~~W 144 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAW 144 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 33444455544444444333
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.26 E-value=2.7 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 309
>PHA02875 ankyrin repeat protein; Provisional
Probab=85.01 E-value=18 Score=34.22 Aligned_cols=211 Identities=14% Similarity=0.048 Sum_probs=105.2
Q ss_pred HHHhcCCchHHHHHHHHHhhcccCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 014507 144 QLKLMEHPLYLQVAELALLEESFEANIRD--YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV--TLTVMVVMYSKAG 219 (423)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g 219 (423)
..+..|+.+.+ +.+++.|..|+... ..+.+..++..|+.+-+. .+.+.|..|+.. ...+.+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33455665544 44456677666533 334556667778876444 444556555432 1123455556889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCCHHHHHHH
Q 014507 220 NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV--YKALLRGYSMNGNSEGAQRV 297 (423)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~ 297 (423)
+.+.+..+++.-....-..+....+.| ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 888776665432110000111112333 334455665 44455556666554321 12344555677887655555
Q ss_pred HHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 298 FEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKC---VALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 298 ~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
+ +.|..++ ..-++.+. ..+..|+.+- .+.+.+.|..|+... ...++...+..|+.+ +.+.+
T Consensus 155 l----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 155 I----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred H----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 4 3443332 22233333 3455676653 444555666555322 123444445666654 44555
Q ss_pred HHCCCCcCH
Q 014507 372 ERDGFMVGK 380 (423)
Q Consensus 372 ~~~g~~~~~ 380 (423)
.+.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 566776654
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.71 E-value=1.5 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMA 224 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A 224 (423)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33334444444444443333
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.53 E-value=3.3 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
..+..++...|++++|.+.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.63 E-value=0.36 Score=37.96 Aligned_cols=51 Identities=8% Similarity=0.069 Sum_probs=21.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 264 (423)
.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333334444444444444444444444433
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.76 E-value=4.8 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
|..+...|...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3344444444444444444444443
No 314
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.72 E-value=22 Score=31.24 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR-- 252 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 252 (423)
.=|.+++..++|.++....-+--+.--+.........|-.|++.+++..+.++-......--.-+...|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346777777777777655444332211112344455566667777777777776666653222333447766666654
Q ss_pred ---cCChhHHHHHH
Q 014507 253 ---AGMLDRGEVLL 263 (423)
Q Consensus 253 ---~~~~~~a~~~~ 263 (423)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46777776665
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.45 E-value=16 Score=26.45 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-++.. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34455544444443321 12222222344555666666666655552 566666655543 345555555555555
Q ss_pred HHHCC
Q 014507 336 MRKAG 340 (423)
Q Consensus 336 m~~~~ 340 (423)
|..+|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55554
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.83 E-value=48 Score=31.40 Aligned_cols=205 Identities=17% Similarity=0.160 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCC
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTL-------TVMVVMYSK----AGNLKMAEETFEEIKLLGEPL 238 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~ 238 (423)
..+|..++....+.++...|.+.+.-+..... +...- ..+-+..+. .-+...-+.+|.......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 45788888899999999999998888776532 22211 112222221 112333455555555544321
Q ss_pred CHHHHHHHHHH---HHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh---CCCHHHHHHHHHHHHHCCCC
Q 014507 239 DKRSYGSMVMA---YVRAGM-LDRGEVLLREMDAQEVYVGSEVYKAL----LRGYSM---NGNSEGAQRVFEAIQFAGIT 307 (423)
Q Consensus 239 ~~~~~~~li~~---~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~m~~~g~~ 307 (423)
. ..-.-|+.+ +-+.|. -++|.++++...+-... |...-|.+ =.+|.+ ...+.+-..+-+.+.+.|+.
T Consensus 376 q-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 Q-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred H-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 122223332 334454 77889999888773211 33222222 122322 23455566666777788887
Q ss_pred CC----HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 014507 308 PD----ARMCALLINA--YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKE 381 (423)
Q Consensus 308 p~----~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 381 (423)
|- ...-|.+.++ +..+|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. ++|+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~ 526 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNER 526 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchh
Confidence 73 3445555544 5678999998877666665 789999999999899999999999999987 678877
Q ss_pred HHHH
Q 014507 382 ASCT 385 (423)
Q Consensus 382 ~~~~ 385 (423)
++++
T Consensus 527 ~~ds 530 (549)
T PF07079_consen 527 MRDS 530 (549)
T ss_pred hHHH
Confidence 7764
No 317
>PRK09687 putative lyase; Provisional
Probab=80.87 E-value=41 Score=29.98 Aligned_cols=236 Identities=11% Similarity=0.002 Sum_probs=123.9
Q ss_pred cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCCCHH
Q 014507 131 MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI----QNAENTLLAMKRRGFICDQV 206 (423)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~ 206 (423)
..+|.......+.++...|..+-...+.. +.. .+|...=...+.+++..|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIE-LCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHH-HHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 34555555555555655554333333222 222 23444444455556666552 4566666655333 23555
Q ss_pred HHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNL-----KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL 281 (423)
Q Consensus 207 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 281 (423)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555555555554321 233333333332 3355555566677777666 3455555555542 344555555
Q ss_pred HHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 282 LRGYSMNG-NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 282 i~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
+.++.+.+ +.+.+...+..+.. .++...-...+.++.+.|+. .|...+-...+.+ + .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 66666543 23345555555543 45666667777777777774 4555444444432 2 23456777777777
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507 361 LNRALEFLIDLERDGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 391 (423)
. +|...+..+.+. .||..+-...+.++.
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 4 577777777653 246665555555543
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.56 E-value=3 Score=21.57 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 014507 383 SCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666667777777766654
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.24 E-value=4.9 Score=21.90 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 381 EASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
..+..+...+.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788889999999999999987644
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.01 E-value=76 Score=32.01 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=43.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CC-----------HHHHHHHHHHHHHCC-----CC-cCH
Q 014507 319 AYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE-NQ-----------LNRALEFLIDLERDG-----FM-VGK 380 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~-----------~~~a~~~~~~m~~~g-----~~-~~~ 380 (423)
-+...|++++|..+|+-..+.. --....+.++...... .. ...|..+.+.....+ +. .+.
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 3556778888887777654211 0012233333322221 11 234555555544332 11 234
Q ss_pred HHHHHHHHH-----HHHcCCHHHHHHHHHHhcccCCcC
Q 014507 381 EASCTLAAW-----FKRLGVVEEVEHVLREYGLRETYS 413 (423)
Q Consensus 381 ~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~~~~~ 413 (423)
.|+..|++. +...|+|++|.+.++++ +++|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 555555543 35789999999888876 4555
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.58 E-value=19 Score=30.36 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=28.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
.++.+.+.+++++|+...++-.+.... |..+-..+++.+|-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344455555555555555554444222 44444455555555555555554444433
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.29 E-value=20 Score=27.23 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA 387 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 387 (423)
+..+-++......+.|++......+++|.+.+++..|.++|+-++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455555666678888888888888888888888888888877665 333333455544
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.26 E-value=64 Score=30.77 Aligned_cols=123 Identities=11% Similarity=0.104 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 212 VVMYSKAGNLKMA-EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 212 i~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
|.--...|++-.| .+++..+....-.|+..-..+. .....|+++.+.+.+....+. +..+..+-.+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3444456776665 4455555554334555444333 355779999999888776654 23355688889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
++.|..+-+.|....++ +........-..-..|-++++...|++...
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 99999999888876554 333333333333556788999999988864
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.14 E-value=20 Score=30.20 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA--GLEPSDKCVALILSA 354 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 354 (423)
|.+.-++.+.+.+...+|+...++-++.. +.|..+-..+++.++-.|+|++|..-++-.-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888999999999998877652 336677788899999999999999887766542 234456677777765
No 325
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.54 E-value=50 Score=29.16 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 014507 384 CTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
..++..+.+.|.+.+|..+.+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4677788888999888877653
No 326
>PRK09687 putative lyase; Provisional
Probab=77.18 E-value=53 Score=29.24 Aligned_cols=223 Identities=11% Similarity=0.031 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL----KMAEETFEEIKLLGEPLDKRS 242 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~ 242 (423)
.+|.......+.++...|..+.. ..+..+... +|...-...+.++++.|+. +++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVF-RLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHH-HHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46666777777888777764433 333334333 2677777778888888873 5678888877443 567777
Q ss_pred HHHHHHHHHHcCChhH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 243 YGSMVMAYVRAGMLDR--GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~--a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
-...+.++...+.... -...+..+...-..++..+-...+.++.+.++. ++...+-.+.+ .+|...-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 6667777766543211 112233332222234666777888888888875 45555555554 45555555556666
Q ss_pred HHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 014507 321 QMAG-QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 321 ~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 399 (423)
.+.+ .-..+...+..+.. .+|...-...+.++.+.|+. .+...+-+..+.+. .....+.++...|.- +|
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hH
Confidence 6543 23456666666653 45777777888899998884 56666655555432 234688889999985 68
Q ss_pred HHHHHHhccc
Q 014507 400 EHVLREYGLR 409 (423)
Q Consensus 400 ~~~~~~m~~~ 409 (423)
...+..+.+.
T Consensus 254 ~p~L~~l~~~ 263 (280)
T PRK09687 254 LPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHhh
Confidence 8888887653
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.89 E-value=25 Score=25.33 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507 225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
.+-++.+....+.|++....+.+.+|-+.+|+..|.++|+-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444333
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.85 E-value=3.6 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 384 CTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34666777788888888888877653
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.52 E-value=8.7 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 014507 351 ILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 351 li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.42 E-value=66 Score=29.43 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV---GSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
..+|..+...+.+.|.++.|...+..+.+.+... +......-....-..|+.++|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666665533111 223344444555555666666666665554
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.20 E-value=11 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555556666666665555543
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.90 E-value=61 Score=28.81 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-----DGFMVGKEAS 383 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 383 (423)
++...+.|..+|.+.+|.++.++....+ +.+...+-.++..++..|+--.+.+-++++.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4455566777777777777777666543 34556666677777777775555555554432 2555554444
No 333
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.82 E-value=45 Score=27.27 Aligned_cols=77 Identities=8% Similarity=-0.010 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC-HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHCC
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPS-DKCVALILSACEKEN----Q-------LNRALEFLIDLERDG 375 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~-~~~~~~li~~~~~~g----~-------~~~a~~~~~~m~~~g 375 (423)
|...+.-+++.....++.+++++... ..+.|+ ..++..+..++...+ + +++|.+.|++..+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 44444444444444444444444332 125666 356666666665543 2 3344444444444
Q ss_pred CCcCHHHHHHHHHHHH
Q 014507 376 FMVGKEASCTLAAWFK 391 (423)
Q Consensus 376 ~~~~~~~~~~l~~~~~ 391 (423)
..|+..+|+.-++...
T Consensus 109 ~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAA 124 (186)
T ss_dssp H-TT-HHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHH
Confidence 4688888887777653
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.73 E-value=62 Score=28.78 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPSDKC 347 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 347 (423)
++.....|..+|.+.+|.++.+...... +.+...|-.++..+...|+--.|.+-++.+.+ .|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3444556667777777777777666543 33566666777777777776666666666543 355554433
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.54 E-value=8.7 Score=23.06 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=8.0
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 014507 213 VMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~ 232 (423)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33334444444444443333
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.43 E-value=11 Score=20.48 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555556666666665555543
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.34 E-value=40 Score=26.47 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=61.2
Q ss_pred HhhcccCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 014507 161 LLEESFEANI--RDYTKIIHGYGKKMQIQNAENTLLAMKRRGF-----ICDQVTLTVMVVMYSKAGN-LKMAEETFEEIK 232 (423)
Q Consensus 161 ~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 232 (423)
|.+.+..++. ...|.+++-....+++.....+++.+..... ..+..+|.+++.+.++..- --.+..+|+-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444444444 3356777777777778877777777743210 1245567778887766655 345677777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Q 014507 233 LLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 233 ~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+.+.+++..-|..+|.++.+-..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Confidence 77777888888888887766533
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.68 E-value=42 Score=26.37 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFAG---I--TPDARMCALLINAYQMAGQ-SQKAYTAFQNMRKAGLEPSDKCVALI 351 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 351 (423)
.++++.-....++......+++.+..-. + ..+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 0 2244456666666644443 33445566666665566666666666
Q ss_pred HHHHHHc
Q 014507 352 LSACEKE 358 (423)
Q Consensus 352 i~~~~~~ 358 (423)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665554
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.03 E-value=32 Score=25.33 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=6.0
Q ss_pred HcCCHHHHHHHHHHHH
Q 014507 322 MAGQSQKAYTAFQNMR 337 (423)
Q Consensus 322 ~~g~~~~a~~~~~~m~ 337 (423)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3344444444444333
No 340
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.98 E-value=18 Score=30.09 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 321 QMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
...++.+......+.+.+ ....|+..+|..++.++...|+.++|.+..+++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555444444444433 235677778888888888888888888777777664
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.90 E-value=1.3e+02 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
|......+-+..+++.+....-.++..-.+.++..|+.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555566666666666554444455555555555543
No 342
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.47 E-value=18 Score=22.16 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666655555543
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.29 E-value=59 Score=27.03 Aligned_cols=128 Identities=9% Similarity=-0.011 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH----
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA--LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA---- 314 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---- 314 (423)
..|..++.+.. .+.+ +.....+++........-.++.. +...+..++++++|+.-++..... |....+.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555555443 3333 44445555555432212222222 345677788888888888876642 2222222
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 315 -LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG 375 (423)
Q Consensus 315 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 375 (423)
.+.+.....|.+|+|+.+++.....+..+ .....-...+...|+-++|..-|++....+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34456777888888888888776544322 223344556778888888888888888764
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.65 E-value=1e+02 Score=29.52 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=88.3
Q ss_pred HHHHHccCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 177 IHGYGKKMQIQNA-ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 177 i~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
|.--...|++-.| .+++..+....-.|+....-+.| ....|+++.+...+...... +.....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 4444556776665 45555565554445555444443 45789999999888766543 34566788999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
++.|..+-.-|....+. +........-.....|-++++.-.|+++..-
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999999988776 5555555555556678899999999888653
No 345
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=70.34 E-value=1.1e+02 Score=29.97 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=92.4
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHhcCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHhhcccC--CCHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRR---ADWLAVLKQLKLMEHPLYLQVAELALLEESFE--ANIRDYTKI 176 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 176 (423)
.+..+|+..++.-...|+++.+.-.|++..-|=. ..|-.-+.-....|+.+.+..+...-.+--.+ |......+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3556888888888899999999988888744422 23333333333347766666554433332222 222222222
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHHHHH-
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVT-LTVMVVMYSKAGNLKMAEE---TFEEIKLLGEPLDKRSYGSMVMAYV- 251 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~---~~~~m~~~g~~~~~~~~~~li~~~~- 251 (423)
+ .-..|+++.|..+++.+.+.- |+... -..-+..-.+.|+.+.+.. ++..... | .-+..+...+.--++
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFAR 448 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHH
Confidence 2 223467888888888777662 33221 1122334445666666552 2222221 1 112222222222222
Q ss_pred ----HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 252 ----RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 252 ----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
-.++.+.|..++.++.+. ++++...|..++......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 235666666666666665 3335555555555544443
No 346
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.02 E-value=13 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555554443
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.09 E-value=64 Score=27.00 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=67.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPD-----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACE 356 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~ 356 (423)
+-+.++|++++|..-|.+.... +++. .+.|..-.-++.+.+.++.|.+-....++.+ |+ ......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3478899999999999988875 2332 2345555667788899999988887777644 43 333334455788
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHH
Q 014507 357 KENQLNRALEFLIDLERDGFMVGKE 381 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~~~~ 381 (423)
+...+++|++=|+.+.+. .|...
T Consensus 180 k~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--CcchH
Confidence 888999999999988875 45443
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.82 E-value=1.1e+02 Score=32.10 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHhCCCCCCHHHHH--
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLG---EPLDKRSYGSMVMAYVRAGML--DRGEVLLREMDAQEVYVGSEVYK-- 279 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~-- 279 (423)
-|..|+..|...|+.++|+++|.+..+.- ...-...+--++.-..+.+.. +-+.+.-+...+....-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46777888888888888888888776521 111112222344433333333 33333333333221111111111
Q ss_pred ----------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507 280 ----------ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM 322 (423)
Q Consensus 280 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 322 (423)
.-+-.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1123344555566666666666655445566666666666553
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.67 E-value=1.2e+02 Score=29.32 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=130.1
Q ss_pred ccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507 165 SFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG 244 (423)
Q Consensus 165 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 244 (423)
....|....-+++..++....+.-++.+-.+|...|- +...|-.++..|... ..+.-..+|+++.+..+. |++.-.
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 3456777788899999999999999999999998753 677889999999988 567888999988887543 444444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQEVY-----VGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLIN 318 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~ 318 (423)
.|..-|-+ ++.+.+..+|.+...+=++ .=...|..+...- ..+.+..+.+..++.. .|...-.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 55555544 8888899999888765332 1122444444321 3567777777777765 354556677777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 319 AYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
-|....++.+|.+++..+.+.. .-|...-..++.-+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 8899999999999999888754 33444444444433
No 350
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.94 E-value=79 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhcccCCcCC
Q 014507 384 CTLAAWFKRLGVVEEVEHVLREYGLRETYSK 414 (423)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 414 (423)
-.+.....+.|+.++|.+.|.++......++
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3455556667777777777777766655554
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.94 E-value=62 Score=25.58 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.0
Q ss_pred CHHHHHHHHHH
Q 014507 290 NSEGAQRVFEA 300 (423)
Q Consensus 290 ~~~~a~~~~~~ 300 (423)
++++|.++|++
T Consensus 59 ~w~eA~rvlr~ 69 (153)
T TIGR02561 59 NYDEAARILRE 69 (153)
T ss_pred CHHHHHHHHHh
Confidence 33333333333
No 352
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.21 E-value=42 Score=26.42 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507 334 QNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 334 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 394 (423)
+.+++.|++++..= ..++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555544322 2344444455454556666666665555454444444444444444
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.95 E-value=51 Score=25.16 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
.+-+..+..-++.|++.....-+.+|.+.+|+..|.++|+.++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666666666666554
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.55 E-value=1.6e+02 Score=29.77 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCCC--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH-
Q 014507 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMK-RRGFICD--QVTLTVMVVMYS-KAGNLKMAEETFEEIKLLGEPLDKR- 241 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~- 241 (423)
+.+...|..+|..- ++.++.+. +..++|. ..++-.+...+. ...++++|+..+.+.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~a---------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIATA---------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHHH---------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34455666666543 34444444 3334443 234445555555 5678899999988775433222221
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHCC---CCCC
Q 014507 242 ----SYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYVGSEVYKAL-LRGYSMNGNSEGAQRVFEAIQFAG---ITPD 309 (423)
Q Consensus 242 ----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 309 (423)
.-..++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234555566655544 88888776553 222233344444 333434478999999988776531 2344
Q ss_pred HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCC--C-------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 014507 310 ARMCALLINAYQ--MAGQSQKAYTAFQNMRKAG--L-------EPSDKCVALILSACE--KENQLNRALEFLIDL 371 (423)
Q Consensus 310 ~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~--~-------~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m 371 (423)
...+-.++.+.. +.+..+++.+..+++.... + .|-..+|..++..++ ..|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555544 4455677777777664321 1 234566777777654 467766666655554
No 355
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.52 E-value=78 Score=26.24 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=106.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 234 LGEPLDKRSYGSMVMAYVRAG----MLDRGEVLLREMDAQEVYVGS----EVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 234 ~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
.|..++...++.++..+.+.. +.+-+..+=.+....+..++- .....=+..|-+.||+.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 477789999999988887654 444444444455555555432 334444667888899998888887665432
Q ss_pred CCC-CHHHHHHHH-HHHHHcC--CHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 306 ITP-DARMCALLI-NAYQMAG--QSQKAYTAFQNMRKAGLEPSD-------KCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 306 ~~p-~~~~~~~li-~~~~~~g--~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
-.+ |...+..-+ .++.+.- +..--..-|.+-.-...+-|. ..=.+++-.|.+.-++.++.++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222222211 1221110 111111122222222222121 22345666777888888999998888654
Q ss_pred C--------------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCcc
Q 014507 375 G--------------FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSR 419 (423)
Q Consensus 375 g--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 419 (423)
. ..+--...|.-...+.+.|..+.|..+++ +..-+.+.|.+.
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~t~lWP 217 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIISTPLWP 217 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeecCCCCC
Confidence 2 23344567888899999999999999998 444455556554
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.41 E-value=39 Score=28.03 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFA-GITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 343 (423)
..+.......+.+......+...+. ...|+...|..++.++...|+.++|.++.+++.. +-|
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 3333444666666555555444331 2478999999999999999999999999998886 445
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.08 E-value=27 Score=24.08 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=23.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
...+.++|+..|+...+.-..+. -.+...++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665554422221 13455556666666666655544
No 358
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.96 E-value=19 Score=31.95 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGIT 307 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (423)
+..|....+.||+++|+.++++.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555543
No 359
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.83 E-value=1.5e+02 Score=29.23 Aligned_cols=317 Identities=12% Similarity=0.051 Sum_probs=171.3
Q ss_pred eeeeeeccccc-hHHHHHHhcCChhhhh--hhH-HHHHHHHhccCCCCCHHHHHHHHHHhc---CCChhhHHHHHHHHHh
Q 014507 75 FTWIQIGPNIT-EEQKQAISQFPRKMTK--RCK-AFVKQIICVSPETGNLSDLLAAWVRFM---KPRRADWLAVLKQLKL 147 (423)
Q Consensus 75 ~~~~~l~~~~~-~~~~~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~---~p~~~~~~~ll~~~~~ 147 (423)
..|..++.--. ..+.+.++..++.+-. |-. .-|......=.+.|..+.+.++|++++ .-+...|...+.-+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34555554333 2333666666665542 322 246666666668899999999999984 3444556655554443
Q ss_pred -cCCchHHHHHHHHHhhc-ccC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c---
Q 014507 148 -MEHPLYLQVAELALLEE-SFE-ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK---A--- 218 (423)
Q Consensus 148 -~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~--- 218 (423)
.|+.+.....++..... |.. .....|...|..-..++++.....+++++.+. ...-|+..-.-|.+ .
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCCh
Confidence 55666655555544332 322 34567888888888889999999999999886 33334333333322 1
Q ss_pred ---CCHHHHHHHHHHHHH--------------------cCCCCCH--HHHHHHHHHHH-------HcCChhHHHHHHHHH
Q 014507 219 ---GNLKMAEETFEEIKL--------------------LGEPLDK--RSYGSMVMAYV-------RAGMLDRGEVLLREM 266 (423)
Q Consensus 219 ---g~~~~A~~~~~~m~~--------------------~g~~~~~--~~~~~li~~~~-------~~~~~~~a~~~~~~m 266 (423)
...+++.++=..... .+.+.+. ...+.+-..+. ...........|+.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 123333333222221 0000000 01111111111 111111111122221
Q ss_pred HhC---CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 267 DAQ---EVY----VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 267 ~~~---~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
.+. .+. ++..+|...+.--.+.|+.+.+.-+|+...-. +..-...|--.++.....|+.+-|..++..-.+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 111 111 24567888888888888888888888877621 1123345555666666668888888777766553
Q ss_pred CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHH
Q 014507 340 GL--EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVE 400 (423)
Q Consensus 340 ~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 400 (423)
-+ .|....+.+.+ +-..|++..|..+++.+...- |+ ...-..-+....+.|..+.+.
T Consensus 361 ~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 22 23333333322 334578899999999888763 43 333334455566788888887
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.38 E-value=30 Score=21.13 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS 353 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 353 (423)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777666666666554
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.08 E-value=29 Score=23.95 Aligned_cols=46 Identities=13% Similarity=-0.063 Sum_probs=20.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCc-C-HHHHHHHHHHHHHcCCHHHHHHH
Q 014507 357 KENQLNRALEFLIDLERDGFMV-G-KEASCTLAAWFKRLGVVEEVEHV 402 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~-~-~~~~~~l~~~~~~~g~~~~A~~~ 402 (423)
..+..++|+..|....+.-..+ + -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544431111 1 22344555555555555555443
No 362
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.97 E-value=1.1e+02 Score=27.62 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH----H
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDARMCALLIN-AYQMAGQSQKAYTAFQNMRKAGLEPSD----K 346 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~----~ 346 (423)
...-....-||+.||.+.|++.+++..+ .|.+.|+..+..-+. .|..+.-..+-.+..+.+.+.|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455556667777777777776655433 355555555443332 233333344445555555555543332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 347 CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
+|..+- |....++.+|-.+|-+....=-+-....|..++.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 444333 2234566666666666554322223344555544
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.14 E-value=2e+02 Score=30.03 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=121.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFICDQ-------VTLTVMV-VMYSKAGNLKMAEETFEEIKLL----GEPLDKRSYGSMV 247 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li 247 (423)
.....++++|..+..++...-..|+. ..|+.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567889999988888665323222 1333332 2233568888888888776653 2334556677777
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHhCCCHHHH--HHHHHHHHHC--CCC----CCHHHHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK---AL--LRGYSMNGNSEGA--QRVFEAIQFA--GIT----PDARMCA 314 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l--i~~~~~~g~~~~a--~~~~~~m~~~--g~~----p~~~~~~ 314 (423)
.+..-.|++++|..+.++..+..-.-+...+. .+ ...+-..|+...+ +..|...... +-+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999988887776643222333332 22 2234556633322 2233322221 001 1223444
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHH
Q 014507 315 LLINAYQMAG-QSQKAYTAFQNMRKAGLEPSDKCV--ALILSACEKENQLNRALEFLIDLERDGF----MVGKEASCTLA 387 (423)
Q Consensus 315 ~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~~~~~~~~l~ 387 (423)
.+..++.+.. ...++..-++--......|-.... ..|+......|++++|...+.++..... .++-......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 4555554421 112222222222222222222222 3677778889999999999988876522 22322222333
Q ss_pred HH--HHHcCCHHHHHHHHHHhcc
Q 014507 388 AW--FKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 388 ~~--~~~~g~~~~A~~~~~~m~~ 408 (423)
+. ....|+.+++.....+-..
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhccC
Confidence 32 2357888888777766333
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.96 E-value=54 Score=25.81 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
+.+.+++.|++++. .-..++..+.+.++.-.|.++++++.+.+...+..|-..-+..+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44455556666543 334456666666666667777777766655554444433444444444
No 365
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=62.77 E-value=51 Score=23.16 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=35.7
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCC
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKI 415 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 415 (423)
++|+-....|+..|+.+|..+++.+.-.=-.+...++++.|.........
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~~~~~ 78 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSRLAST 78 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccccCcc
Confidence 66776667777778888887777776666677777777777766555444
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.76 E-value=57 Score=23.76 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
..++|..|-+.+...+.. ....--+-+..+.+.|++++|..+.+.+ ..||...|..|-.. +.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 356677777766654321 1222223345677889999999887776 37888888766543 6777777777777
Q ss_pred HHHHCCC
Q 014507 370 DLERDGF 376 (423)
Q Consensus 370 ~m~~~g~ 376 (423)
+|...|-
T Consensus 93 rla~sg~ 99 (115)
T TIGR02508 93 RLAASGD 99 (115)
T ss_pred HHHhCCC
Confidence 7777763
No 367
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=1.2e+02 Score=27.57 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=55.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH-
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRR---GFICDQVTL--TVMVVMYSKAGNLKMAEETFEEIKL-----LGEPLDKRS- 242 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~- 242 (423)
..++...-+.++.++|.+.++++.+. --.|+...| ..+...+...|+.+++.+++++.++ .|+++++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34555556677888898888888654 234455555 3456667778899999998888887 677775543
Q ss_pred HHHHHHHHHH-cCChh
Q 014507 243 YGSMVMAYVR-AGMLD 257 (423)
Q Consensus 243 ~~~li~~~~~-~~~~~ 257 (423)
|..+-+-|.+ .|++.
T Consensus 159 fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 5555555544 34443
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.63 E-value=28 Score=22.69 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
++.+.++.+.+... .-|-.-.-.+|.+|...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555432 11223333456777777777777776666654
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.21 E-value=1.9e+02 Score=29.24 Aligned_cols=64 Identities=6% Similarity=-0.034 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHc
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-------LKMAEETFEEIKLL 234 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 234 (423)
+...|. +|-.|.++|++++|.++..+.... +......+...+..|....+ -+....-|++....
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344564 677788999999999999655543 44445567777888776533 23455555555544
No 370
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.96 E-value=58 Score=29.60 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=50.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
.+-|.+.|.+++|+..|..-.... +.+.+++..-..+|.+...+..|+.=-......+-. =...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 456777888888888887666542 237777777778888877776665544444332110 112333333333334444
Q ss_pred HHHHHHHHHHHH
Q 014507 292 EGAQRVFEAIQF 303 (423)
Q Consensus 292 ~~a~~~~~~m~~ 303 (423)
++|.+=++....
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 444444444443
No 371
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.36 E-value=78 Score=24.18 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 346 KCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 346 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
.-|..+--.|++.- +.+.++|+.|...|+--. +..|......+...|++++|.++|+.
T Consensus 66 ~RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444444433 388888888888766554 66678888888888999999888864
No 372
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.05 E-value=2.2e+02 Score=29.23 Aligned_cols=98 Identities=13% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hhhcCchhhHhhhhhcccccccccCCC-cceeeeeeccccc-hHHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDT-SMFTWIQIGPNIT-EEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDL 123 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~-~~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a 123 (423)
+.++.+++|+.. .+. ..|..|.. ..-.+...+..+- +++.+.|....-.|-..+..-|..-+..++..+.....
T Consensus 367 l~~k~yeeAl~~--~k~--~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDA--AKA--SIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHH--HHh--ccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 777788888766 222 33333321 1122233333333 34445555555555555555665555555555554443
Q ss_pred HHHHHHh-cCCChhhHHHHHHHHHh
Q 014507 124 LAAWVRF-MKPRRADWLAVLKQLKL 147 (423)
Q Consensus 124 ~~~~~~~-~~p~~~~~~~ll~~~~~ 147 (423)
..+.=.. .+.+...|..+|..+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 3322221 11233455555555544
No 373
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.72 E-value=1.2e+02 Score=26.28 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK 217 (423)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 217 (423)
|...-.++....+++.+...+....+ +.+-|...|+ ....++.|.-+.+++.+.. --+..|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 44444566677777777664443321 2333333332 2234566666666666541 123346667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhCCCHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EV--YVGSEVYKALLRGYSMNGNSE 292 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~ 292 (423)
.|.++.|-..+++.-+. ..+.++++|+++|++.... +- ..-...|...-..+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 88777776666554331 1233455555555543321 10 001123444445566666666
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 293 GAQRVFEAIQFA----GITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAG---LEPSDKCVALILSACEKENQLNRA 364 (423)
Q Consensus 293 ~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a 364 (423)
+|-..+.+-... .--++. ..|-..|-.|.-..++..|.+.+++-.+.+ -.-+..+...|+.+|- .|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence 655544332210 001121 234555566666778888888887754321 1224567777777764 4676666
Q ss_pred HHHH
Q 014507 365 LEFL 368 (423)
Q Consensus 365 ~~~~ 368 (423)
.+++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5554
No 374
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.26 E-value=2.2e+02 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=25.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.+.|+.+=+-+++++.+. +++..-| -|+. ..|++++|++-+.++
T Consensus 884 SQkDPKEYLPfL~~L~~l--~~~~rry--~ID~--hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 884 SQKDPKEYLPFLQELQKL--PPLYRRY--KIDD--HLKRYEKALRHLSAC 927 (928)
T ss_pred hccChHHHHHHHHHHHhC--Chhheee--eHhh--hhCCHHHHHHHHHhh
Confidence 456677777777776652 3332212 2332 367888888776553
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.09 E-value=64 Score=22.78 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQ 302 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~ 302 (423)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.03 E-value=22 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 014507 168 ANIRD-YTKIIHGYGKKMQIQNAENTLLAMKRRGFIC 203 (423)
Q Consensus 168 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 203 (423)
||... |+..|....+.||+++|+.++++.++.|..-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44433 5677777778888888888888887777653
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.80 E-value=1.3e+02 Score=26.40 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=104.0
Q ss_pred cCCChhhHHHHHHHHH-hcCCchHHHHHHHHHhhcccCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--
Q 014507 131 MKPRRADWLAVLKQLK-LMEHPLYLQVAELALLEESFEANI---RDYTKIIHGYGKKMQIQNAENTLLAMKRR---GF-- 201 (423)
Q Consensus 131 ~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~-- 201 (423)
-+||+..-|.--.+-+ +...+++|..-+..+++...+.-. ...-.+|....+.+++++....+.++... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 3455544333322221 233556666666655554322222 23344566677777777777777666432 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---
Q 014507 202 ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL--GEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV--- 273 (423)
Q Consensus 202 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--- 273 (423)
.-+..+.|.+++.-+...+.+...+.|+.-.+. ..+-+ -.|-+-|...|...+++....++++++...--.-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 113445666666666666666655555443221 00100 1234456666667777777777777776531110
Q ss_pred --------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH-----HHcCCHHHHHH
Q 014507 274 --------GSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLINAY-----QMAGQSQKAYT 331 (423)
Q Consensus 274 --------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~-----~~~g~~~~a~~ 331 (423)
-...|..=|+.|....+-.+...++++... +..-|.+.... +|+-| .+.|++++|..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 124666667777777777777777765443 22234444333 23333 35567776653
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.12 E-value=98 Score=25.47 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCCCH--H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 186 IQNAENTLLAMKRRGFICDQ--V-----TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~--~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
.+.|+.+|+.+.+.-..|.. . .-...+-.|.+.|.+++|.++++.... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 46788888887766333211 1 112345567788888888888888876 3455555555555555443
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.67 E-value=2.1e+02 Score=28.27 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=76.8
Q ss_pred HcCChhHHHHHHHHHHhCC----CC----CCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCCC-----
Q 014507 252 RAGMLDRGEVLLREMDAQE----VY----VGSE---VYKALLRGYSMNGNSEGAQRVFEAIQF-------AGITP----- 308 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~----~~----p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~p----- 308 (423)
....+++|...|.-....- +. .+++ +.-.+...+...|+.+-|..+.++..- ..+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3445667777666655431 10 1222 333445567777888877777665331 11111
Q ss_pred --------CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC--
Q 014507 309 --------DARMCALL---INAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE-KENQLNRALEFLIDLERD-- 374 (423)
Q Consensus 309 --------~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~-- 374 (423)
+-..|-++ |+.+.+.|-|..|+++.+-+.+....-|+.....+|..|+ +..++.-.++++++....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 12223222 3455667777777777777766443335666666666654 456677777777766443
Q ss_pred -CCCcCHHHHHHHHHHHHHcC
Q 014507 375 -GFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 375 -g~~~~~~~~~~l~~~~~~~g 394 (423)
..-||-..-.+|...|.+..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcC
Confidence 33455444444555554433
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.64 E-value=4e+02 Score=31.49 Aligned_cols=284 Identities=12% Similarity=0.021 Sum_probs=148.1
Q ss_pred ccCCCCCHHHHHHHHHHh----cC--CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507 113 VSPETGNLSDLLAAWVRF----MK--PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 113 ~~~~~g~~~~a~~~~~~~----~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (423)
+--+.+.+.+|+..+++- .+ ....-|-.+...|+..++++....+..... .+...+ ..|-.....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhhccH
Confidence 444667777888777772 11 111334455558888888888766654211 122233 345556788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHH-
Q 014507 187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY-GSMVMAYVRAGMLDRGEVLLR- 264 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~- 264 (423)
..|...|+.+.+.+.. ...+++-++......|.++.+....+-....- .+....+ +.=+.+--+.+++|.......
T Consensus 1466 ~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~~ 1543 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLSD 1543 (2382)
T ss_pred HHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhhc
Confidence 9999999999887432 35567766666666777777766554444331 2222222 222333345666665555433
Q ss_pred -------------HHHhCCCCCCHHHH-HHH----------HHHHHhCCCHHHHHHHHHHHH-----------HCCCCCC
Q 014507 265 -------------EMDAQEVYVGSEVY-KAL----------LRGYSMNGNSEGAQRVFEAIQ-----------FAGITPD 309 (423)
Q Consensus 265 -------------~m~~~~~~p~~~~~-~~l----------i~~~~~~g~~~~a~~~~~~m~-----------~~g~~p~ 309 (423)
.+... ..-|...+ ..+ +.+++..|.+..+.++.-++. ..++.++
T Consensus 1544 ~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred ccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 00000 00011111 111 112222222222222221110 0112222
Q ss_pred HH------HHHHHHHHHHHcCCHHHHHHHHHH----HHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 310 AR------MCALLINAYQMAGQSQKAYTAFQN----MRKA----GLEP-SDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 310 ~~------~~~~li~~~~~~g~~~~a~~~~~~----m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
.. -|-.-+.- .+....+.+-.-. +... +..- -..+|....+.+...|.++.|...+-...+.
T Consensus 1623 ~~s~~~sd~W~~Rl~~---tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLER---TQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred ccccccchhHHHHHHH---hchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 11 12111111 1111112211111 1111 2211 2467888888888899999999888777766
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 375 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
+ -+..+-...+.+...|+...|..++++..+.+.
T Consensus 1700 r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1700 R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 5 334566778889999999999999998765443
No 381
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.25 E-value=74 Score=25.03 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 300 AIQFAGITPDARMCALLINAYQMA-GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLN 362 (423)
Q Consensus 300 ~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 362 (423)
.+.+.|.+++..= ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455565544332 2344444443 345567777777776665556666666666666666543
No 382
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.15 E-value=14 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 254 GMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
|.-.+|..+|++|.+.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344455556666666655555 3444443
No 383
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.14 E-value=79 Score=28.80 Aligned_cols=81 Identities=20% Similarity=0.042 Sum_probs=56.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
.+-|.+.|.+++|+..+..-... .| +.+++..-..+|.+.+.+..|+.=.......+ ...+.+|.+.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 46688999999999999887665 34 88899889999999999988876666655432 123455665554
Q ss_pred hhHHHHHHHHHH
Q 014507 256 LDRGEVLLREMD 267 (423)
Q Consensus 256 ~~~a~~~~~~m~ 267 (423)
-..++....+.+
T Consensus 174 AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 174 ARESLGNNMEAK 185 (536)
T ss_pred HHHHHhhHHHHH
Confidence 444444444443
No 384
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.46 E-value=49 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 348 VALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 348 ~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
|..|+.-|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666667777777777766655
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.25 E-value=93 Score=31.11 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQ--EVYVGSEVYKALLRGYSMNGNSE------GAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
+|+.+|..+|++-.+.++++..... |-+.-...||..|....+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6778888888888888888777653 33333456777777777777654 2333333333 34577777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~ 337 (423)
+++-..--+-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544333333333444443
No 386
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.20 E-value=1.3e+02 Score=25.61 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 014507 272 YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMC--ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK 346 (423)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 346 (423)
.+...-+|.|+--|.-...+.+|.+.|.. ..|+.| |..++ ..-|+.....|+.++|.+........-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34444555554444444444444444432 223333 33333 234555667777777777776664332333332
Q ss_pred HHHHHHH----HHHHcCCHHHHHHHHHH
Q 014507 347 CVALILS----ACEKENQLNRALEFLID 370 (423)
Q Consensus 347 ~~~~li~----~~~~~g~~~~a~~~~~~ 370 (423)
.+-.|.. -..+.|..++|.++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222211 13455666666666554
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.20 E-value=2.4e+02 Score=28.50 Aligned_cols=306 Identities=12% Similarity=0.027 Sum_probs=158.4
Q ss_pred hhHHHHHHHHhccC-CCCCHHHHHHHHHHhc----CCChh-----hHHHHHHHHHhcCCchHHHHHHHHHhhcc----cC
Q 014507 102 RCKAFVKQIICVSP-ETGNLSDLLAAWVRFM----KPRRA-----DWLAVLKQLKLMEHPLYLQVAELALLEES----FE 167 (423)
Q Consensus 102 ~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~----~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~ 167 (423)
.+..++-.+...+. ...+++.|...++++. +++.. .-..++..+.+.+... |....+..++.- ..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 34445555555444 6778999999998871 22221 1223444445554444 766666554432 22
Q ss_pred CCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC-----
Q 014507 168 ANIRDYTKI-IHGYGKKMQIQNAENTLLAMKRRG---FICDQVTLTVMVVMYSK--AGNLKMAEETFEEIKLLGE----- 236 (423)
Q Consensus 168 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~----- 236 (423)
+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+... .+..+.+.+..+++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 223334443 333333479999999998886542 23334445555555443 4556677777776643221
Q ss_pred ----CCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHh-------CC----------CC-------------CCH-----
Q 014507 237 ----PLDKRSYGSMVMAYV--RAGMLDRGEVLLREMDA-------QE----------VY-------------VGS----- 275 (423)
Q Consensus 237 ----~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~-------~~----------~~-------------p~~----- 275 (423)
.|...+|..++..++ ..|+++.+...++++.+ .. ++ |..
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~ 295 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLP 295 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecC
Confidence 345567777777665 56776677666655532 11 00 100
Q ss_pred ----HHHHHHHH--HHHhCCCHHHHHHHHHH-------HH-HCCCCCC--------HHHHHHHHHH---------HHHcC
Q 014507 276 ----EVYKALLR--GYSMNGNSEGAQRVFEA-------IQ-FAGITPD--------ARMCALLINA---------YQMAG 324 (423)
Q Consensus 276 ----~~~~~li~--~~~~~g~~~~a~~~~~~-------m~-~~g~~p~--------~~~~~~li~~---------~~~~g 324 (423)
....-++. ..+..+..++|.+++++ .. .....+. ...|...+.. .+-.|
T Consensus 296 ~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 296 KEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 11112222 23344444455555544 33 1111111 1223222222 24568
Q ss_pred CHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHH--HHHcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHH--
Q 014507 325 QSQKAYTAFQNMRKAG-LEPS-----DKCVALILSA--CEKENQLNRALEFLI--------DLERDGFMVGKEASCTL-- 386 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~-~~p~-----~~~~~~li~~--~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~~~~l-- 386 (423)
++..|...++.|.+.. -.|+ ...+...+.| +...|+.+.|...|. .....+...+..++..|
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 8999999999998631 1121 2233333333 345789999999997 44455555555555432
Q ss_pred HHHHHHcCC--HHH--HHHHHHHhcc
Q 014507 387 AAWFKRLGV--VEE--VEHVLREYGL 408 (423)
Q Consensus 387 ~~~~~~~g~--~~~--A~~~~~~m~~ 408 (423)
+-.+...+. .++ +.++++.+..
T Consensus 456 ~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 456 AIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHhHhhcccchhhhHHHHHHHhcCc
Confidence 222222222 223 6777776643
No 388
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=55.04 E-value=1.3e+02 Score=25.57 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-|..| --|++..|.+=|.+.-+.. +.|+ |.+|=--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDD-PNDP--FRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcC-CCCh--HHHHHHH
Confidence 4567777777777777777777777777764433322333222222 3566777766665555443 1122 2211111
Q ss_pred H-HHcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHH
Q 014507 250 Y-VRAGMLDRGEVLL-REMDAQEVYVGSEVYKALLR-GYSMNGNSEGAQRVFEAIQFAGI------TPDARMCALLINAY 320 (423)
Q Consensus 250 ~-~~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~------~p~~~~~~~li~~~ 320 (423)
. -..-++.+|..-+ ++..+. |..-|..-|- .|.-.=..+ .+++.+....- ..=+.||--+..-+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 1 1223444444332 222222 2223322222 222111111 22222221100 01235677777777
Q ss_pred HHcCCHHHHHHHHHHHHHCC
Q 014507 321 QMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~ 340 (423)
...|+.++|..+|+-....+
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 77788888877777766543
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.03 E-value=84 Score=23.24 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
-..++|..|.+.+...+. -....--+-+..+.+.|++++|+.. -. ..-.||...|..|-. .+.|..+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~---~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL---PQ-CHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH---HT-TS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh---cc-cCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 456778888888777542 1222223334567788888888221 11 223677777765543 4778888888888
Q ss_pred HHHHHCC
Q 014507 369 IDLERDG 375 (423)
Q Consensus 369 ~~m~~~g 375 (423)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8776655
No 390
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=54.95 E-value=87 Score=25.40 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 299 EAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 299 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
+.+...|++.+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+.+.|-+..
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334556766554443 4555555556666788888888887766777777777777777776543
No 391
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.70 E-value=1.1e+02 Score=27.33 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA---G--LEPSDKCV 348 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~--~~p~~~~~ 348 (423)
....-...++.....|++..|.+++.+..+. .-....|+++=.. ..++++-....+++.+. + ...|+..|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQL--LEELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHhcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3344555667777788888888888776642 0011111111111 11233333333333321 1 14577778
Q ss_pred HHHHHHHHHcCCHHHHH
Q 014507 349 ALILSACEKENQLNRAL 365 (423)
Q Consensus 349 ~~li~~~~~~g~~~~a~ 365 (423)
..++.||.-.|+...+.
T Consensus 201 ~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 88888888877665544
No 392
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.66 E-value=27 Score=17.53 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 014507 315 LLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m 336 (423)
.+...+...|++++|...++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444443
No 393
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.48 E-value=37 Score=33.83 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 266 (423)
+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.+.|+.+.+..+-..+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444555555555655555555555443311 1223444444445555544444443333
No 394
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.99 E-value=1.2e+02 Score=24.84 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
++|.+.|+..... .|+...|+.-+... ++|-++..++.+++
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 3344444444432 56666666666543 23555555555544
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.64 E-value=1.3e+02 Score=25.18 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=50.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICD----QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
+-+.+.|++++|..-|......-.... ...|..-..++.+.+.++.|+.-..+..+.+ +......-.-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345667777777777777666522211 1233334455566666666666666655543 11222223334456666
Q ss_pred CChhHHHHHHHHHHhCC
Q 014507 254 GMLDRGEVLLREMDAQE 270 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~~ 270 (423)
.++++|+.=|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 66777777776666653
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.34 E-value=1.9e+02 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
...+.-.+-..+.+.|+.+.|.+++++..
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34466666677777777777777766543
No 397
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.71 E-value=36 Score=22.52 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507 342 EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL 393 (423)
Q Consensus 342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 393 (423)
.|+...++.++..+++..-.++++..+.++.+.|. .+..+|-.-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34445666666666666666677777777666654 4556666555555543
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.02 E-value=2.2e+02 Score=26.81 Aligned_cols=180 Identities=9% Similarity=0.040 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCC
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRG--FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL---------GEPL 238 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~~ 238 (423)
...+.-+...|..+|+++.|++.+.+.+..- -+.....|-.+|..-.-.|+|..+..+-.+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3457778889999999999999999966541 1113445666677777788888877777766653 1333
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH
Q 014507 239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE------VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG-ITPDAR 311 (423)
Q Consensus 239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ 311 (423)
....+..+...+.+ ++..|.+.|-...... +.|...+....+.+.+-.++-+--..+.....-+. ...++.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 44444444444433 6666655554433211 23444444444455555444443333322111100 012333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKA-----GLEPSDKCVALILS 353 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~ 353 (423)
.+..+..-| .+++...++++++++.. -+.|...+.-.+|+
T Consensus 308 lr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 444444433 34688888888887642 23455444444443
No 399
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.99 E-value=2e+02 Score=26.32 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFA---GITPDARMC--ALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPSDK 346 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 346 (423)
....++...-+.++.++|.++++++.+. --.|+.+.| ..+.+++...|+..++.+++.+.++ .+++|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344455556666788888888777652 124555554 3445666677888888888777766 56666433
Q ss_pred -HHHHHHHHHH
Q 014507 347 -CVALILSACE 356 (423)
Q Consensus 347 -~~~~li~~~~ 356 (423)
.|..+-.-|.
T Consensus 157 ~~fY~lssqYy 167 (380)
T KOG2908|consen 157 SSFYSLSSQYY 167 (380)
T ss_pred hhHHHHHHHHH
Confidence 3444444443
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.45 E-value=88 Score=22.11 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q 014507 219 GNLKMAEETFEEI 231 (423)
Q Consensus 219 g~~~~A~~~~~~m 231 (423)
|+.+.|.++++.+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333444444333
No 401
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.33 E-value=1.7e+02 Score=25.33 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507 107 VKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI 186 (423)
Q Consensus 107 ~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (423)
...-+..|...-+|.-|-..+++.++|=..- ..+--|.+..+.+--.++.+.....++..+.....+++ +...|+.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEPIQSR--CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEPIQSR--CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhhHHhh--hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 3444555555555555555555554442211 11112223333333333333344445555554444433 3456666
Q ss_pred HHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 014507 187 QNAENTLLAMKRR-G-----------FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP 237 (423)
Q Consensus 187 ~~a~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (423)
.+|+.-++.-... | -.|.+.....++..| ..+++++|.+++.++-+.|..
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgys 270 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYS 270 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCC
Confidence 6666655543321 1 123444444444443 334556666666666555544
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.86 E-value=1e+02 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKR 198 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~ 198 (423)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555544
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.08 E-value=1.4e+02 Score=29.47 Aligned_cols=104 Identities=12% Similarity=-0.042 Sum_probs=64.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014507 181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE 260 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 260 (423)
...|+...|...+............+....|.+...+.|....|..++.+..... ...+-++-.+.+++....++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3457777777766665443222233344455566666677777777777766554 334556667778888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 261 VLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
+.|++..+.... +...-+.|...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 888887776543 4455555544433
No 404
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.79 E-value=19 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 324 GQSQKAYTAFQNMRKAGLEPSDKCVALILSA 354 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 354 (423)
|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4444555666666666655553 4555443
No 405
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.64 E-value=79 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=11.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
.++.-|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34445555566666666665543
No 406
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.97 E-value=2.1e+02 Score=25.77 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=32.8
Q ss_pred CCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 288 NGNSEGAQRVF-EAIQFAGITPDAR----MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLN 362 (423)
Q Consensus 288 ~g~~~~a~~~~-~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 362 (423)
...+++..... ++|.+.+ -|+.. .|+.++++ ++|.+-.++..+-.- -...+|.-|+.+++..|+.+
T Consensus 268 e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qal----rhlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQAL----RHLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHHH----HHHHhhhHHHHHHhcCChHH
Confidence 34455544444 3455444 45543 35555554 344433333222110 11246777888888888765
Q ss_pred H
Q 014507 363 R 363 (423)
Q Consensus 363 ~ 363 (423)
.
T Consensus 339 L 339 (412)
T KOG2297|consen 339 L 339 (412)
T ss_pred H
Confidence 4
No 407
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.62 E-value=3.3e+02 Score=28.00 Aligned_cols=124 Identities=9% Similarity=0.057 Sum_probs=74.8
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC
Q 014507 105 AFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKM 184 (423)
Q Consensus 105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 184 (423)
..+..+|..+...|+++.|-...-.|..-+..-|...+..++..+.......+ +.......+...|..++..+.. .
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~ 468 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S 468 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H
Confidence 45778888888899999998888888777777777777777776665443221 2222223456677777777766 2
Q ss_pred CHHHHHHHHHHHHH---------cCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 185 QIQNAENTLLAMKR---------RGF-------ICDQVTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 185 ~~~~a~~~~~~m~~---------~g~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
+...-.++..+-.. ... .-+...-..|...|...+++..|+.++-..+
T Consensus 469 ~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 469 DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 22211111111000 000 1122333458888888899999988887765
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.23 E-value=1.4e+02 Score=25.94 Aligned_cols=22 Identities=36% Similarity=0.319 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH
Q 014507 381 EASCTLAAWFKRLGVVEEVEHV 402 (423)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~ 402 (423)
.+...+..++.+.|+.++...+
T Consensus 219 ~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 219 EVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHhCCHHHHHHH
Confidence 3344444444444444444444
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.60 E-value=1.3e+02 Score=26.23 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRK----AG-LEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.-.+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34567788999999999999998853 23 24456677777788888888888776655543
No 410
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=46.39 E-value=2.8e+02 Score=29.72 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=97.7
Q ss_pred HHHhccCCCCCHHHHHHHHHHh-------cCCChhhHHHHHHHHHh-cCCchHHHHHHHHHhhcccCCCHHHHHHHH---
Q 014507 109 QIICVSPETGNLSDLLAAWVRF-------MKPRRADWLAVLKQLKL-MEHPLYLQVAELALLEESFEANIRDYTKII--- 177 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~-------~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 177 (423)
..+..+...++|.+|..+.++- ..-+...|-.=+..+.+ .++.+..-.+...+.+..+.. ..|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--cccccccccc
Confidence 3455677889999999988773 34455555444444443 444444444444343332211 1111111
Q ss_pred ---------HHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 178 ---------HGYGKKMQIQNAENTLLAMKRRGFICDQ-VTLTVMVVMYSKAG--NLKMAEETFEEIKLLGEPLDKRSYGS 245 (423)
Q Consensus 178 ---------~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ 245 (423)
......+++...-+.+....+. ..+. .-...++.+|++.+ ++++|+.+..++++.+ ...-..
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~----~~~ae~ 850 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED----PESAEE 850 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC----hHHHHH
Confidence 1111222333332222222221 2233 33457888888888 8888888888888651 111111
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
.+.-.+- +-.+.++|+..... . | .=-+++-|-..+.|+.+=+-+++++.+. +|+.. .-.|+ ...|+
T Consensus 851 alkyl~f---LvDvn~Ly~~ALG~--Y-D--l~Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~r--ry~ID--~hLkR 916 (928)
T PF04762_consen 851 ALKYLCF---LVDVNKLYDVALGT--Y-D--LELALMVAQQSQKDPKEYLPFLQELQKL--PPLYR--RYKID--DHLKR 916 (928)
T ss_pred HHhHhee---eccHHHHHHHHhhh--c-C--HHHHHHHHHHhccChHHHHHHHHHHHhC--Chhhe--eeeHh--hhhCC
Confidence 1111111 11233333333221 0 0 0013344445556777777777777653 22221 11222 33577
Q ss_pred HHHHHHHHHH
Q 014507 326 SQKAYTAFQN 335 (423)
Q Consensus 326 ~~~a~~~~~~ 335 (423)
+++|++-+.+
T Consensus 917 y~kAL~~L~~ 926 (928)
T PF04762_consen 917 YEKALRHLSA 926 (928)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 411
>PRK09857 putative transposase; Provisional
Probab=46.38 E-value=2.2e+02 Score=25.55 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=7.1
Q ss_pred HcCChhHHHHHHHHHHh
Q 014507 252 RAGMLDRGEVLLREMDA 268 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~ 268 (423)
..++.++..++++.+.+
T Consensus 218 ~~~~~~~~~~~~~~l~~ 234 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAE 234 (292)
T ss_pred hccccchHHHHHHHHHH
Confidence 33444444444444433
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.26 E-value=51 Score=32.85 Aligned_cols=26 Identities=8% Similarity=-0.188 Sum_probs=12.0
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHH
Q 014507 134 RRADWLAVLKQLKLMEHPLYLQVAEL 159 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 159 (423)
+...-..++..|.+.|-.+.+..+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~ 429 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICK 429 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444445555555555554444444
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.84 E-value=3.8e+02 Score=28.10 Aligned_cols=298 Identities=13% Similarity=0.032 Sum_probs=159.5
Q ss_pred HHhccCCCCCHHHHHHHHHHh---c-----CCChhhHHHHHHHHHhcC----CchHHHHHHHH----HhhcccCCCHHHH
Q 014507 110 IICVSPETGNLSDLLAAWVRF---M-----KPRRADWLAVLKQLKLME----HPLYLQVAELA----LLEESFEANIRDY 173 (423)
Q Consensus 110 ll~~~~~~g~~~~a~~~~~~~---~-----~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~----~~~~~~~~~~~~~ 173 (423)
+.+.....++-..-++-.+.+ + .+..+.|..++.-+-+.. .......++.. ....|. |+
T Consensus 290 L~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~---- 364 (894)
T COG2909 290 LCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PS---- 364 (894)
T ss_pred HHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hH----
Confidence 445555556666556555554 1 244467777776654422 12233333332 223332 11
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc---C-----------CCCCHHHHH----HHHHH--HHHcCCHHHHHHHHHHHHH
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRR---G-----------FICDQVTLT----VMVVM--YSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~---g-----------~~p~~~~~~----~li~~--~~~~g~~~~A~~~~~~m~~ 233 (423)
-.|.-..+.|+++.|-.+++..... + --|+....+ .+..+ .....++++|..+..+...
T Consensus 365 -eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~ 443 (894)
T COG2909 365 -EAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEH 443 (894)
T ss_pred -HHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2344556788888888887776221 0 012222111 12233 2346789999999988876
Q ss_pred cCCCCCH-------HHHHHHHHHH-HHcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507 234 LGEPLDK-------RSYGSMVMAY-VRAGMLDRGEVLLREMDAQ----EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 234 ~g~~~~~-------~~~~~li~~~-~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (423)
.-..|+. ..++.|-... ...|+++.+.++-+...+. -..+....+..+..+..-.|++++|..+....
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 4222222 2344333222 3468889999888877653 23345667788888899999999999998766
Q ss_pred HHCCCCCCHH---HHHHHH--HHHHHcCC--HHHHHHHHHHHHHC-----CC-CCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 014507 302 QFAGITPDAR---MCALLI--NAYQMAGQ--SQKAYTAFQNMRKA-----GL-EPSDKCVALILSACEKEN-QLNRALEF 367 (423)
Q Consensus 302 ~~~g~~p~~~---~~~~li--~~~~~~g~--~~~a~~~~~~m~~~-----~~-~p~~~~~~~li~~~~~~g-~~~~a~~~ 367 (423)
.+..-.-++. .|..+. ..+...|+ +.+.+..|...... .+ .+-..+...++.++.+.. ...++..-
T Consensus 524 ~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~ 603 (894)
T COG2909 524 EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLG 603 (894)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhc
Confidence 5432122333 333332 33556663 33333344443321 11 122345555666655521 11222222
Q ss_pred HHHHHHCCCCcCHHHH--HHHHHHHHHcCCHHHHHHHHHHhcccCCcC
Q 014507 368 LIDLERDGFMVGKEAS--CTLAAWFKRLGVVEEVEHVLREYGLRETYS 413 (423)
Q Consensus 368 ~~~m~~~g~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 413 (423)
++--......|-..-+ ..|++.....|+.++|...++++.....-+
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 3222222222222222 367888889999999999999887654443
No 414
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.58 E-value=5.9e+02 Score=30.24 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 309 DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
-..+|-...+...++|+++.|...+-...+.+ .| ..+.-...-.-..|+...|..++++-.+.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 35678888888888999999888776666654 33 34556666777888989999998887754
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.97 E-value=1.5e+02 Score=26.63 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------CCCHHHH
Q 014507 225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM----------NGNSEGA 294 (423)
Q Consensus 225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 294 (423)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+.++..+|+.+..... -|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45677777777777777766666666666667777777777765322 25555555544 4777777
Q ss_pred HHHHHHH
Q 014507 295 QRVFEAI 301 (423)
Q Consensus 295 ~~~~~~m 301 (423)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7776543
No 416
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.97 E-value=1.6e+02 Score=29.65 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhH------HHHHHHHHHhCCCCCCHHHHHHH
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLL--GEPLDKRSYGSMVMAYVRAGMLDR------GEVLLREMDAQEVYVGSEVYKAL 281 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~m~~~~~~p~~~~~~~l 281 (423)
+|+.+|...|++..+..+++.+... |-+.=...||..|+...+.|.++- +.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999999874 333345678888999999997643 333333333 44577889888
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~ 302 (423)
+++-..-..-.-..-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877655333333344444444
No 417
>PHA03100 ankyrin repeat protein; Provisional
Probab=44.85 E-value=1.7e+02 Score=28.26 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=7.5
Q ss_pred CCCCCHHHHHHHHHHhc
Q 014507 115 PETGNLSDLLAAWVRFM 131 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~~ 131 (423)
++.|+.+.+..+++.+.
T Consensus 43 ~~~~~~~ivk~Ll~~g~ 59 (480)
T PHA03100 43 KEARNIDVVKILLDNGA 59 (480)
T ss_pred hccCCHHHHHHHHHcCC
Confidence 34444444444444443
No 418
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.42 E-value=92 Score=20.31 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=20.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHcCCHHHHHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY-----SKAGNLKMAEET 227 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~~ 227 (423)
..|++=+|.++++.+-.....+....+..+|... .+.|+.+.|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4555556666665554332222334444444432 234555555443
No 419
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.32 E-value=1.5e+02 Score=22.69 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 362 NRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
++..++|..|.+.|+-.. +..|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345778888888877554 4557777888888999999999886
No 420
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.38 E-value=1.4e+02 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=10.1
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 014507 246 MVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m 266 (423)
++..|...++.++|..-++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555444
No 421
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.16 E-value=2e+02 Score=23.98 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS--MVMAYVRAGMLDRGEVLLREMDAQEVYVG--SEVYKA 280 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ 280 (423)
...|..++.... .+.. +......++....-...-.++.+ +...+...+++++|...++........-+ ..+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344555555542 3333 34444445544321111222222 22345667777777777776664322111 122233
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
|.......|.+++|+.+++.....+. .......--+++...|+-++|..-|+...+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45566677788888888777664322 12223334466777888888888888777654
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.14 E-value=1.5e+02 Score=24.07 Aligned_cols=58 Identities=7% Similarity=-0.019 Sum_probs=26.6
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 197 KRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 197 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
++.|+..+.. -..++..+...++.-.|.++++.+.+.+...+..|...-|..+...|-
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3445543332 223344444444444555555555555544444444344444444443
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.13 E-value=3e+02 Score=25.85 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=42.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFICDQV--TLTVMVVMYS--KAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 234 (423)
+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999987 665554 4455555554 456788999999988764
No 424
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.04 E-value=71 Score=23.71 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
.++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3555666666666788888888887766777777777788888776543
No 425
>PRK09857 putative transposase; Provisional
Probab=41.58 E-value=2.6e+02 Score=25.07 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=26.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG 379 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (423)
...|+.++..++++.+.+. ........-.+..-+.+.|.-+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3344444444444444332 122222333344444444444555666666666665543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.31 E-value=2e+02 Score=23.71 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 291 SEGAQRVFEAIQFAGITPD--ARMC-----ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 359 (423)
++.|+.+|+.+.+.--.|. ...- -..+-.|.+.|.+++|.+++++... .|+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 6788888888876532331 1112 2234467788888888888888775 344444444444444444
No 427
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.13 E-value=1.5e+02 Score=22.15 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
+++.+.++.-.++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455566666777777777776665
No 428
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.87 E-value=67 Score=24.11 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=21.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507 351 ILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 351 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 394 (423)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555665555555555544444444444444
No 429
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=5.2e+02 Score=27.54 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
.+.-.+.|.++.+---.-|..++..-...+...|++..+.+++.++.+. |-+++...+..++..+...|- ..-..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHh
Confidence 4555566666655211335556666666667778888888888887764 667777777777777777663 44445555
Q ss_pred Hhc
Q 014507 405 EYG 407 (423)
Q Consensus 405 ~m~ 407 (423)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 543
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.39 E-value=1e+02 Score=19.36 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=10.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 014507 318 NAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~ 338 (423)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555554
No 431
>PRK12356 glutaminase; Reviewed
Probab=38.38 E-value=3.1e+02 Score=24.96 Aligned_cols=158 Identities=10% Similarity=0.021 Sum_probs=84.7
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM 312 (423)
Q Consensus 233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 312 (423)
.-|.+|+-..||.++..-...|.+..- | +.....+-..||..-....+++..+++++++....+..|..+
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g~P~NP------m----INAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v 160 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGGKPLNP------L----VNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEV 160 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCCCCCCc------c----ccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHH
Confidence 346788888888776543333332100 0 000112333333331111223444555555554444556555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-------CHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEP-S-DKCVALILSACEKENQLNRALEFLIDLERDGFMV-------GKEAS 383 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------~~~~~ 383 (423)
|.+ -...|+...|+.. .|++.|.-+ | ..+.....+.|+-....++.-.+.--+...|+.| +..+-
T Consensus 161 ~~S----E~~t~~RNrAlA~--~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~ 234 (319)
T PRK12356 161 YQS----EQTTNFHNRAIAW--LLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNV 234 (319)
T ss_pred HHH----HHhhhHHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHH
Confidence 443 3344555555444 455655443 3 3455555556665666666666666666667665 55666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Q 014507 384 CTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
..+......+|-++.+-++.-+.
T Consensus 235 r~v~s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 235 PYILAEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred HHHHHHHHHcCCccchhhHHHHh
Confidence 77777778899999998887765
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.15 E-value=3.4e+02 Score=25.43 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=39.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCChhHHHHHHHHHHhC
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKR--SYGSMVMAYV--RAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 269 (423)
...+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445889999999999999887 555444 4555555554 355677888888877765
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.06 E-value=1.4e+02 Score=21.00 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507 227 TFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 227 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 266 (423)
+|+-....|+..|...|..++.....+=-++...++++.|
T Consensus 30 L~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 30 LYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333333444444444444443333333333333333333
No 434
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.85 E-value=2.6e+02 Score=23.94 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEE 230 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~ 230 (423)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33333334444444444433
No 435
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=37.76 E-value=80 Score=20.82 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHHHHH-HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCcc
Q 014507 364 ALEFLID-LERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSR 419 (423)
Q Consensus 364 a~~~~~~-m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 419 (423)
..+++.+ +.+.|.+|+ +.-+.+.+. ......+...++.+.++|.+.+.||.+
T Consensus 11 vL~~I~~~~~~~G~~Pt---~rEIa~~~g-~~S~~tv~~~L~~Le~kG~I~r~~~~~ 63 (65)
T PF01726_consen 11 VLEFIREYIEENGYPPT---VREIAEALG-LKSTSTVQRHLKALERKGYIRRDPGKA 63 (65)
T ss_dssp HHHHHHHHHHHHSS------HHHHHHHHT-SSSHHHHHHHHHHHHHTTSEEEGCCSC
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHhC-CCChHHHHHHHHHHHHCcCccCCCCCC
Confidence 3344333 334577774 344444443 235677778888888888887777654
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.74 E-value=3.1e+02 Score=24.79 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 014507 260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM----------AGQSQKA 329 (423)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~a 329 (423)
.++++.|.+.++.|.-.+|.-+.-.+.+.=.+.++..+|+.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 57899999999999999999888889999999999999999985 33335556655543 5888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 330 YTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 330 ~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
.++++.-. ..|..+...+...+.
T Consensus 338 mkLLQ~yp----~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 338 MKLLQNYP----TTDISKMLAVADSLR 360 (370)
T ss_pred HHHHhcCC----CCCHHHHHHHHHHHH
Confidence 88876542 445555555555444
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.46 E-value=99 Score=20.43 Aligned_cols=49 Identities=4% Similarity=-0.030 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507 308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK 357 (423)
Q Consensus 308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 357 (423)
|....++.++..+++-.-.+++...+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445555666666665556666666666666553 344555555544443
No 438
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.28 E-value=1.8e+02 Score=28.05 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHH--HHHHHHH-----HHccCCHHHHHHHHHHHHHcCCCCCH---HHHH
Q 014507 140 AVLKQLKLMEHPLYLQVAELALLEESFEANIRD--YTKIIHG-----YGKKMQIQNAENTLLAMKRRGFICDQ---VTLT 209 (423)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~ 209 (423)
+.+...++.++.+.. +.+++.|..++... ....+.. ....|+.+-+ +.+.+.|..++. ...+
T Consensus 37 t~L~~A~~~~~~~iv----k~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVV----KILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHH----HHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCCc
Confidence 344444555665444 33445666554322 1223344 4455554443 334445544322 2233
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHH
Q 014507 210 VMVVMYS-KAGNLKMAEETFEEIKLLGEPLDKR---SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY--KALLR 283 (423)
Q Consensus 210 ~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~ 283 (423)
.+..+.. ..|+.+-+. .+.+.|..++.. ..+ .+...+..|. .-.++++.+.+.|..++.... .+.+.
T Consensus 109 pL~~A~~~~~~~~~iv~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 109 PLLYAISKKSNSYSIVE----YLLDNGANVNIKNSDGEN-LLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hhhHHHhcccChHHHHH----HHHHcCCCCCccCCCCCc-HHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 3333332 555554443 334455444322 233 3344444551 113344445555655433211 23344
Q ss_pred HHHhCCCHHHHHHHH
Q 014507 284 GYSMNGNSEGAQRVF 298 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~ 298 (423)
..+..|+.+-+.-++
T Consensus 182 ~A~~~~~~~iv~~Ll 196 (480)
T PHA03100 182 IAVEKGNIDVIKFLL 196 (480)
T ss_pred HHHHhCCHHHHHHHH
Confidence 555556554444333
No 439
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.21 E-value=3.1e+02 Score=24.66 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 211 MVVMYSKA---GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG-----MLDRGEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 211 li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
+|+++.++ .|.|.|+-++-.|.+.|..|....-..++.++-..| -...|...++.....|.+--.......+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~av 208 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~ 303 (423)
-.++..-+-..+..-++...+
T Consensus 209 iyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 209 IYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHcCCCchHHHHHHHHHHH
No 440
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.01 E-value=92 Score=23.07 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555555666678888888877766667777667777777777654
No 441
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.98 E-value=1.9e+02 Score=28.72 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCChhhHHH---HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507 121 SDLLAAWVRFMKPRRADWLA---VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMK 197 (423)
Q Consensus 121 ~~a~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 197 (423)
+.+-.+|.-|.+|+.-.|.+ ..--....|+...|...+...+...+...-+....+.+...+.|..-.|..++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44555566665665544332 222234467777777666555544433333445556777778888888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 198 RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 198 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
... .....++-.+.++|.-..+.+.|++.|++..+.. .-+.+.-+.|...-|
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 664 3356678888999999999999999999988764 334555555554433
No 442
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.17 E-value=3.4e+02 Score=24.79 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGITPDA---RMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
..|.-+..+.|+..+|.+.|+++.+. .|-. .....+|.++....-+.++..++.+..
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455667777777777766543 2311 123345666666555555555544443
No 443
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.86 E-value=65 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhcccCCcCC
Q 014507 385 TLAAWFKRLGVVEEVEHVLREYGLRETYSK 414 (423)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 414 (423)
++++.+.+|.-.++|+++++-|.++|-++.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 566777788888888888888888776654
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.38 E-value=1.1e+02 Score=22.91 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 014507 256 LDRGEVLLREMDAQEVYVGS 275 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~ 275 (423)
.-.|.++++.+.+.+...+.
T Consensus 23 ~~ta~ei~~~l~~~~~~is~ 42 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISL 42 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--H
T ss_pred CCCHHHHHHHhhhccCCcCH
Confidence 33444444444444333333
No 445
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.33 E-value=4.1e+02 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 014507 324 GQSQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~~p~ 344 (423)
.+.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 345555555555555444444
No 446
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=34.11 E-value=4e+02 Score=25.84 Aligned_cols=68 Identities=26% Similarity=0.333 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhCC-CHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV----YKALLRGYSMNG-NSE 292 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g-~~~ 292 (423)
..++|+|++..++.++.+.+ ...|-...|..+|.++.+.|+.||..| ...-+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 35677777777777766522 344567788999999999999887643 334455577666 456
Q ss_pred HHHHHH
Q 014507 293 GAQRVF 298 (423)
Q Consensus 293 ~a~~~~ 298 (423)
++.++.
T Consensus 274 e~~~lr 279 (545)
T TIGR01228 274 DADKLR 279 (545)
T ss_pred HHHHHH
Confidence 665554
No 447
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=3.3e+02 Score=23.68 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.5
Q ss_pred HcCCHHHHHHHHHHH
Q 014507 322 MAGQSQKAYTAFQNM 336 (423)
Q Consensus 322 ~~g~~~~a~~~~~~m 336 (423)
....+++|...+.+.
T Consensus 90 ~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRA 104 (284)
T ss_pred hhccccHHHHHHHHH
Confidence 334444444444443
No 448
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.82 E-value=2.4e+02 Score=22.09 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhC
Q 014507 258 RGEVLLREMDAQ 269 (423)
Q Consensus 258 ~a~~~~~~m~~~ 269 (423)
.|.++++.+.+.
T Consensus 35 sa~eI~~~l~~~ 46 (148)
T PRK09462 35 SAEDLYKRLIDM 46 (148)
T ss_pred CHHHHHHHHHhh
Confidence 333333333333
No 449
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.68 E-value=1.3e+02 Score=25.34 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhCC
Q 014507 277 VYKALLRGYSMNG 289 (423)
Q Consensus 277 ~~~~li~~~~~~g 289 (423)
-|..+..+|++.|
T Consensus 165 E~~avA~aca~~g 177 (236)
T TIGR03581 165 EYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHHcC
Confidence 3444444444443
No 450
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.00 E-value=1.9e+02 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=7.9
Q ss_pred HHcCCHHHHHHHHHHHH
Q 014507 356 EKENQLNRALEFLIDLE 372 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~ 372 (423)
...|.+++|...+++.+
T Consensus 52 ~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 52 RRFGHYEEALQALEEAI 68 (94)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 34444455544444443
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.99 E-value=3.8e+02 Score=24.08 Aligned_cols=146 Identities=13% Similarity=0.159 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 256 LDRGEVLLREMDAQEV----YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
.+.|.+.|++....+. ..+......++....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567778888776422 34666777788888888887776666666664 4577778889999998989988888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHH----HHHHCCCCcCHHHHHHHHHHH----HHcCCHHHHH
Q 014507 332 AFQNMRKAG-LEPSDKCVALILSACEKENQL--NRALEFLI----DLERDGFMVGKEASCTLAAWF----KRLGVVEEVE 400 (423)
Q Consensus 332 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~----~m~~~g~~~~~~~~~~l~~~~----~~~g~~~~A~ 400 (423)
+++.....+ +++.. ...++.++...+.. +.+.+++. .+.+. +..+......++..+ +.....++..
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888888754 55443 23445555534433 55555554 23222 333322444455443 3344555666
Q ss_pred HHHHHhc
Q 014507 401 HVLREYG 407 (423)
Q Consensus 401 ~~~~~m~ 407 (423)
++|+.-.
T Consensus 300 ~f~~~~~ 306 (324)
T PF11838_consen 300 EFFEDKP 306 (324)
T ss_dssp HHHHHHC
T ss_pred HHHhhCc
Confidence 6665443
No 452
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.68 E-value=2.1e+02 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
.++.-|...+++++|.+-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555556666666666666654
No 453
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=30.42 E-value=3.6e+02 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 014507 352 LSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
+-++.+.++.+.+..+.+-+.+.
T Consensus 199 LLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 199 LLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 33444557777777777666553
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=4e+02 Score=23.89 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcC
Q 014507 257 DRGEVLLREMDAQE--------VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDARMCALLINAYQMAG 324 (423)
Q Consensus 257 ~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g 324 (423)
+...-+++-+-+.| ++.|...+|.|+. .+-++..++=+.+.+ .|..--...|..+..-|++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k-----kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~ 129 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK-----KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIM 129 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH-----hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh
Q ss_pred CHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH--cCCHH
Q 014507 325 QSQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR--LGVVE 397 (423)
Q Consensus 325 ~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~--~g~~~ 397 (423)
+.+.+.++..+..+ .|.+.| ..+-..|.-.|....-+++-.+..+.|.+.|-..+...--..-.+-.+ ..++.
T Consensus 130 D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFk 209 (412)
T COG5187 130 DIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFK 209 (412)
T ss_pred hhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHhcccCCcCCCCCcccccC
Q 014507 398 EVEHVLREYGLRETYSKIPGSRSIAL 423 (423)
Q Consensus 398 ~A~~~~~~m~~~~~~~~~~~~~~~~~ 423 (423)
+|-.++-+.. |++++.+|
T Consensus 210 eAa~Ll~d~l--------~tF~S~El 227 (412)
T COG5187 210 EAAILLSDIL--------PTFESSEL 227 (412)
T ss_pred HHHHHHHHHh--------cccccccc
No 455
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.99 E-value=2e+02 Score=20.34 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=11.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 014507 318 NAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~ 338 (423)
......|++++|.+.+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666655543
No 456
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.87 E-value=4e+02 Score=23.63 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=73.9
Q ss_pred hcccCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc---C
Q 014507 163 EESFEANIRDYTKIIHG-YGKKMQIQNAENTLLAMKRRGFICDQV---TLTVMVVMYSKAGNLKMAEETFEEIKLL---G 235 (423)
Q Consensus 163 ~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~---g 235 (423)
+++.+||+..=|..-++ -.+..+.++|+.-|++..+....-... ....+|..+.+.+++++.+..|.+|..- .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34567777664443332 124457888888888887763222333 3345677888888888888888887531 1
Q ss_pred C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 236 E--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----Q-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 236 ~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
+ .-+....|.++.--....+.+--..+++.-.+ . +-..--.|-+.|-..|...+++.+...+++++.
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 1 12334555555555544444444444433221 1 000001123344455555555555555555554
No 457
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.54 E-value=4.4e+02 Score=24.01 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 237 PLDKRSYGSMVMAYVRAGM------------LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
+-|+.+|-.++..--..-. .+.-+.++++..+.+. -+......+|..+.+..+.++..+-|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777777765433211 2333455555555533 24555555566666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 014507 305 GITPDARMCALLINAYQM---AGQSQKAYTAFQNM 336 (423)
Q Consensus 305 g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m 336 (423)
. +-+...|...|..... .-.++....+|.+.
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 1244555555544333 12344454444443
No 458
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=29.44 E-value=2.7e+02 Score=21.55 Aligned_cols=30 Identities=7% Similarity=-0.091 Sum_probs=19.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFI 202 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 202 (423)
+..++--+...|+++.|+++.+...+.|..
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334555556777777777777777766644
No 459
>PHA02989 ankyrin repeat protein; Provisional
Probab=29.38 E-value=5.4e+02 Score=25.05 Aligned_cols=19 Identities=11% Similarity=-0.164 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHhcCCCh
Q 014507 117 TGNLSDLLAAWVRFMKPRR 135 (423)
Q Consensus 117 ~g~~~~a~~~~~~~~~p~~ 135 (423)
..+.+.+..+++.+..++.
T Consensus 13 ~~~~~~v~~LL~~GadvN~ 31 (494)
T PHA02989 13 TVDKNALEFLLRTGFDVNE 31 (494)
T ss_pred cCcHHHHHHHHHcCCCccc
Confidence 3455555555555544443
No 460
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=29.30 E-value=4.9e+02 Score=24.78 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507 185 QIQNAENTLLAMKRRGF-----ICDQ---VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~-----~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 256 (423)
+...|.-.|..+..+.+ ..|. .+|-.-...+...+.. ++|..+.+..+.||...+.-+...|.+.=-+
T Consensus 415 d~~~AFiafANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp----~L~~Hl~kl~l~PDiylidwiftlyskslpl 490 (586)
T KOG2223|consen 415 DLADAFIAFANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLP----KLFTHLKKLELTPDIYLIDWIFTLYSKSLPL 490 (586)
T ss_pred CcHHHHHHHHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccH----HHHHHHHhccCCCchhhHHHHHHHHhccCCh
Confidence 44556666666554322 1122 2333333333333333 3445555666788888887777777777777
Q ss_pred hHHHHHHHHHHhCC
Q 014507 257 DRGEVLLREMDAQE 270 (423)
Q Consensus 257 ~~a~~~~~~m~~~~ 270 (423)
|-|-++++-.-..|
T Consensus 491 dlacRIwDvy~rdg 504 (586)
T KOG2223|consen 491 DLACRIWDVYCRDG 504 (586)
T ss_pred HHhhhhhheeeecc
Confidence 77777766655544
No 461
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.06 E-value=4.4e+02 Score=23.96 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 014507 204 DQVTLTVMVVMYSKAGN------------LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV 271 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 271 (423)
|+.+|-.++..--..-. .+.-+.++++..+.+ +.+......+|..+.+..+.+...+.++++.....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 78888888765433321 456677888888774 45677788899999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Q 014507 272 YVGSEVYKALLRGYSM---NGNSEGAQRVFEAIQ 302 (423)
Q Consensus 272 ~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 302 (423)
. +...|...++.... .-.++.+..+|.+..
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 4 66677777766544 234566666665544
No 462
>PHA02878 ankyrin repeat protein; Provisional
Probab=28.71 E-value=83 Score=30.51 Aligned_cols=105 Identities=15% Similarity=0.036 Sum_probs=47.8
Q ss_pred HHHHHhhcccCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 157 AELALLEESFEANIRD---YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV---TLTVMVVMYSKAGNLKMAEETFEE 230 (423)
Q Consensus 157 ~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~ 230 (423)
+.+.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++.. -.+ .+...++.|+.+-+ +.
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll----~~gad~n~~d~~g~t-pLh~A~~~~~~~iv----~~ 219 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL----SYGANVNIPDKTNNS-PLHHAVKHYNKPIV----HI 219 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH----HCCCCCCCcCCCCCC-HHHHHHHhCCHHHH----HH
Confidence 4455666666555432 224455556667665444443 445444322 222 23333455655433 33
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 014507 231 IKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG 274 (423)
Q Consensus 231 m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 274 (423)
+.+.|..++ ..-.+.|..+....++. ++.+.+.+.|..++
T Consensus 220 Ll~~ga~in~~d~~g~TpLh~A~~~~~~~----~iv~~Ll~~gadvn 262 (477)
T PHA02878 220 LLENGASTDARDKCGNTPLHISVGYCKDY----DILKLLLEHGVDVN 262 (477)
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHhcCCH----HHHHHHHHcCCCCC
Confidence 344454333 22344444444444443 33344445555444
No 463
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=28.50 E-value=3.3e+02 Score=22.27 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014507 189 AENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLRE 265 (423)
Q Consensus 189 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 265 (423)
..+++..+.+.|+--|..--...+..-.+.| ..-..+..++.+.|+ +..+....+..+......+.|..++..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~k 126 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRK 126 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3344444444444433333333444444443 333444555555552 344444444444444444444444433
No 464
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.11 E-value=4.2e+02 Score=23.39 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cC
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AG 254 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~ 254 (423)
.+++..+...+......+ +......+...|.. ..+..+|.++|....+.|. ......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 344555555555555432 12223233333322 2346667777776665542 2223334444433 23
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 014507 255 MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG-------NSEGAQRVFEAIQFAGITPDARMCALLINAYQM----A 323 (423)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 323 (423)
|..+|...|++..+.|..+...+...+-..|..-. +...|...+.+....+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 66677777777777665533222333333333321 2235666676666654 33333333333322 2
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 014507 324 GQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~ 341 (423)
.+.++|...|+...+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 366777777777776664
No 465
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=27.85 E-value=2.7e+02 Score=29.36 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=9.8
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 014507 281 LLRGYSMNGNSEGAQRVF 298 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~ 298 (423)
.+...+..|+.+-+..++
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll 642 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELL 642 (823)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 455556666665544444
No 466
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.39 E-value=5.9e+02 Score=24.86 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHC-CCCcCHHH
Q 014507 307 TPDARMC-ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK--ENQLNRALEFLIDLERD-GFMVGKEA 382 (423)
Q Consensus 307 ~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-g~~~~~~~ 382 (423)
.|+..|+ +.+++.+-+.|-.++|...+..+.... +|+...|..+|..-.. +-++..+.++++.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444433 345555566666666666666665532 3445555555443211 12255566666666554 4 44555
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 014507 383 SCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~ 403 (423)
|-..+..=...|..+.+-.++
T Consensus 533 w~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHHHhhccCCCcccccHHH
Confidence 554444444555555555444
No 467
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.37 E-value=7e+02 Score=25.72 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHhC
Q 014507 222 KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-------------VYVGSEVYKALLRGYSMN 288 (423)
Q Consensus 222 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~~~~~li~~~~~~ 288 (423)
+-...+-..+.+.|+..+......++... .|++..+..+++++...| ...+......++.++.+
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARM 312 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~ 312 (423)
++...++.+++++...|+.+....
T Consensus 259 ~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHH
No 468
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.27 E-value=1e+02 Score=15.90 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507 360 QLNRALEFLIDLERDGFMVGKEASCTLA 387 (423)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 387 (423)
+.+.+..+|+++... .+-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 455566666665543 223444444433
No 469
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.04 E-value=2.2e+02 Score=19.88 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=19.5
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 287 MNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
...+.+++.++++.+..+ ...+|..+..++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~R----G~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETR----GKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCchH
Confidence 334456666666666643 3345555555555555443
No 470
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=26.75 E-value=4.3e+02 Score=23.05 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH--CCC-C
Q 014507 272 YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITPDARMCALLINAYQMAGQ--SQKAYTAFQNMRK--AGL-E 342 (423)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~--~~~-~ 342 (423)
.|-...-..++....+....++..++++.+... |..++......++.+++..|. +.-+..++++..+ ..+ .
T Consensus 8 ~P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~ 87 (253)
T PF09090_consen 8 LPFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEA 87 (253)
T ss_dssp STTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-T
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc
Confidence 466677777888887777777788888776643 234566778888888887764 4444444444332 113 3
Q ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 014507 343 PSDKCVALILSACEK--ENQLNRALEFLIDLERDGFMVGKEASCTL 386 (423)
Q Consensus 343 p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 386 (423)
++...=..++.+..+ ..++..+.-+.++|...|+-....+.+-+
T Consensus 88 ~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~ 133 (253)
T PF09090_consen 88 ESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWV 133 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHH
Confidence 444444455555443 46777788888888888775444444333
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.34 E-value=3.3e+02 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
|-.+.-+|...+++.+|.+.|..
T Consensus 167 ~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 167 YYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 472
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=26.15 E-value=6.8e+02 Score=25.10 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
|+. ....|.++.-+|.+.+++..|..-|.+..+.
T Consensus 583 ~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafkl 616 (1141)
T KOG1811|consen 583 GID-TFGAWHAWGLACLKAENLAAAREKFKQAFKL 616 (1141)
T ss_pred CCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence 443 4568999999999999999999999887663
No 473
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.07 E-value=3.2e+02 Score=21.36 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 308 PDARMCALLINAYQMAG---QSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 308 p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
++..+--.+.-++.+.. +..+...++++..+.. .|+ .....-|.-++.+.++++.+.++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333333333444433 3444555666655421 222 23334444556666666666666666555
No 474
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=2.5e+02 Score=29.33 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (423)
.+++++++.+.+.-.--|.. +|.-+.+.|.++-|+.+.++-..+ ...+..+|+.+.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvGqa--------iIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVGQA--------IIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCcccHH--------HHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 298 FEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM 377 (423)
Q Consensus 298 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (423)
-.++- |..+|..|.......|+.+-|+..|++.+. |..|--.|.-.|+.++..++.+.....+-
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D- 729 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRND- 729 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhh-
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 378 VGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
.......-.-.|+.++=.++++.
T Consensus 730 -----~~~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 730 -----ATGQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred -----hHHHHHHHHHhccHHHHHHHHHh
No 475
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.94 E-value=3.1e+02 Score=21.04 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHCCCCcCHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK-----------ENQLNRALEFLIDLERDGFMVGKE 381 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-----------~g~~~~a~~~~~~m~~~g~~~~~~ 381 (423)
+...++.+.+..---.++++..++....-.|. .-....+.-|.+ .....-.-.+++.+.+.++.....
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~-efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~ 99 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ-EFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVED 99 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHH
Confidence 44555555555555566666666655443332 223333333322 122344555677777777766666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 382 ASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
.+..+-.-|.+--+..||..+|+-++
T Consensus 100 l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 100 LFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 67777777777778888988888765
No 476
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.77 E-value=4.4e+02 Score=22.77 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=31.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK-AGNLKMAEETFEEIKL 233 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 233 (423)
++..+-++++++++.+.+.++...+...+..-.+.+-.+|-. .|....+.+++..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 455566667777777777777666666666666655555532 2333444444444443
No 477
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.35 E-value=1.9e+02 Score=24.45 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 014507 290 NSEGAQRVFEAIQFAGIT-------PDARMCALLINAYQMAGQ---------SQKAYTAFQNMRKAGLEP-SDKCVALIL 352 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~~~~p-~~~~~~~li 352 (423)
..+.|..++..|--..++ ....-|..+..+|++.|- .+...++++...+.|++- =+..|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 356677777766543221 245567777777777763 333344444444444321 123444444
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 014507 353 SACEKENQLNRALEFLID 370 (423)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~ 370 (423)
+.-.-.-++++..+++..
T Consensus 216 Dk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAI 233 (236)
T ss_pred ccccCCCCHHHHHHHHHH
Confidence 443333344444444443
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.07 E-value=3.4e+02 Score=21.26 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=11.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+.-++.+.|+++++.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444555555555555555544
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.82 E-value=2.3e+02 Score=26.83 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH--HcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMK--RRG-----FICDQVTLTVMVVMYSKAGNLKMAEETFEEIK 232 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~--~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (423)
.-.+++.++-.||+..|+++++.+. +.+ ..-.+.+|-.+.-+|.-.+++..|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667666666666542 111 12234455556666666666777766666653
No 480
>PHA02798 ankyrin-like protein; Provisional
Probab=24.61 E-value=5.1e+02 Score=25.17 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCCCCC
Q 014507 224 AEETFEEIKLLGEPLD 239 (423)
Q Consensus 224 A~~~~~~m~~~g~~~~ 239 (423)
..++.+.+.+.|..++
T Consensus 88 ~~~iv~~Ll~~GadiN 103 (489)
T PHA02798 88 MLDIVKILIENGADIN 103 (489)
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3455555566665444
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.54 E-value=8.1e+02 Score=25.45 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHhC
Q 014507 222 KMAEETFEEIKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS----------EVYKALLRGYSMN 288 (423)
Q Consensus 222 ~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------~~~~~li~~~~~~ 288 (423)
++-..++.+|..+--.|+ ..+...++..|-...+++...++.+.++.. ||. ..|.-.++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 344455666665433333 345556666666677777777777776653 221 1233333333445
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHH-----HHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 014507 289 GNSEGAQRVFEAIQFA--GITPDARM-----CALLI--NAYQMAGQSQKAYTAFQNMRKAGLEPSD 345 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~--g~~p~~~~-----~~~li--~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 345 (423)
|+-++|+.+.-.+++. .+.||..+ |.-+. +.|...+..+.|.++|++.-+ +.|+.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~ 320 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLE 320 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchh
Confidence 6677777666655543 24455432 22211 234445556677777776654 34543
No 482
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=24.43 E-value=1.7e+02 Score=22.78 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507 347 CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF 390 (423)
Q Consensus 347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 390 (423)
|...++ .+.+.|-..+...++++|.+.|+..+...|+..++-.
T Consensus 112 tlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 444433 3445577777778888888888888888877766543
No 483
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.33 E-value=1.4e+02 Score=16.55 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRK 338 (423)
Q Consensus 326 ~~~a~~~~~~m~~ 338 (423)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 484
>PHA02798 ankyrin-like protein; Provisional
Probab=24.19 E-value=5.6e+02 Score=24.92 Aligned_cols=151 Identities=8% Similarity=0.000 Sum_probs=70.9
Q ss_pred HHHHHHhhcccCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHH
Q 014507 156 VAELALLEESFEANI---RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV---TLTVMVVMYSKAGNLKMAEETFE 229 (423)
Q Consensus 156 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~ 229 (423)
++.+.+++.|..+|. .-.+.+..++.....+....++.+.+.+.|..++.. -.+.+..+ +..+.. .-.++.+
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~ 129 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHH
Confidence 344556677776653 222233222222223344567788888888776543 23444433 333322 2345556
Q ss_pred HHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 230 EIKLLGEPLDKR---SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV---YKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 230 ~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
.+.+.|..++.. -++.+ ..+.+.|. ..-.++++.+.+.|..++... ....+..+.+.+-...-.++++.+.+
T Consensus 130 ~Ll~~Gadvn~~d~~g~tpL-~~a~~~~~-~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~ 207 (489)
T PHA02798 130 FMIENGADTTLLDKDGFTML-QVYLQSNH-HIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD 207 (489)
T ss_pred HHHHcCCCccccCCCCCcHH-HHHHHcCC-cchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence 666777665543 23433 33444443 112344555566776654321 11222333322211112345666666
Q ss_pred CCCCCCH
Q 014507 304 AGITPDA 310 (423)
Q Consensus 304 ~g~~p~~ 310 (423)
.|..++.
T Consensus 208 ~Ga~i~~ 214 (489)
T PHA02798 208 NGFIINK 214 (489)
T ss_pred CCCCccc
Confidence 6665543
No 485
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.10 E-value=2.5e+02 Score=19.48 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=13.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
++.+.++.--++|+++++-|.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444555555556666666655554
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.63 E-value=6.4e+02 Score=23.93 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHH---cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 187 QNAENTLLAMKR---RGF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 187 ~~a~~~~~~m~~---~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
++...++..... .|+ ..+......++... .|+...++.+++.....+...+. +...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 445555554432 233 44555555554432 67777777777766543111111 222222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHH
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSM---NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ-----SQKAYTAFQ 334 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~ 334 (423)
+...... ...+......+++++.+ ..+.+.|+..+..|.+.|..|....-..++.++-.-|. ..-|...++
T Consensus 216 ~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 216 LQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred Hhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 2221111 01111223333444433 46788888888888888877765555555555444432 223444444
Q ss_pred HHHHCCC
Q 014507 335 NMRKAGL 341 (423)
Q Consensus 335 ~m~~~~~ 341 (423)
....-|+
T Consensus 295 ~~~~~g~ 301 (413)
T PRK13342 295 AVERIGM 301 (413)
T ss_pred HHHHhCC
Confidence 4444554
No 487
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.43 E-value=3.2e+02 Score=20.44 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=10.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 014507 215 YSKAGNLKMAEETFEEIKLLG 235 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g 235 (423)
+.++...++|+++.+-|.+.|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 344444455555555555444
No 488
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=23.41 E-value=6.3e+02 Score=23.79 Aligned_cols=101 Identities=11% Similarity=-0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--CCCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcC-----HHH
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMRK--AGLE-PS--DKCVALILSACEKENQLNRALEFLIDLERDGF-MVG-----KEA 382 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~-p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~-----~~~ 382 (423)
..+...+-..|+.++|..++.+..- .|.- -. ..-..--++.|...+++-.|.-+-+++...-+ .|+ ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 3455667778888888887776531 1100 00 01111224566677777777776666654422 233 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcccCCcCC
Q 014507 383 SCTLAAWFKRLGVVEEVEHVLREYGLRETYSK 414 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 414 (423)
|+.++......+.+-.+.+.|+.+-+.+.+..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 77888888788888888888888877777655
No 489
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.29 E-value=2.1e+02 Score=27.46 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRS-YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
.-+...+.++.|..++.+..+. .|+-.. |..--.++.+.+++..|+.=+....+.... -...|..=..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 3344556677777777777664 444333 333335666667776666666555554421 222333333444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 292 EGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
.+|...|+.... +.|+-.-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 556665555554 356655555555444
No 490
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.90 E-value=7.2e+02 Score=24.27 Aligned_cols=151 Identities=11% Similarity=0.062 Sum_probs=88.9
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHH-HHcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLG-EPLD-------KRSYGSMVMAY-VRAGMLDRGEVLLREMDAQEVYVGSEVY--KALLRG 284 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g-~~~~-------~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~ 284 (423)
.-.|+..+|++-..+|.+.- -.|. ......++..| ...+.++.|+.-|....+.--.-|...+ ..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 34799999999999998742 1233 11233333333 4568899999988877665433344333 345667
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--------HHHH--HHHcCCHHHHHHHHHHHHHCC----C-CCCHHHHH
Q 014507 285 YSMNGNSEGAQRVFEAIQFAGITPDARMCAL--------LINA--YQMAGQSQKAYTAFQNMRKAG----L-EPSDKCVA 349 (423)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--------li~~--~~~~g~~~~a~~~~~~m~~~~----~-~p~~~~~~ 349 (423)
|.+.|+.+.-.++++.+. .++..++.. ++.+ ....+++.+|..++++-.+-. . +...-...
T Consensus 414 YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 888888887777777665 333332211 1111 246789999999998876521 1 11111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 014507 350 LILSACEKENQLNRALEFLID 370 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~ 370 (423)
.|-..+...|+..++.+...-
T Consensus 490 LLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHHhcchHHHHhccch
Confidence 233344556777777666653
No 491
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=22.66 E-value=6e+02 Score=23.31 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
.-.+++.|.+.|.+++|.++.....+
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 34788899999999999988876654
No 492
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.62 E-value=6.3e+02 Score=23.51 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=41.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ-MAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 338 (423)
.|..+.+.|-+..|+++-+-+..-...-|....-.+|+.|+ +.++++-..++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 36677888888888888888887654446666667777765 56777777777776544
No 493
>PHA02878 ankyrin repeat protein; Provisional
Probab=22.32 E-value=7.1e+02 Score=24.03 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=6.1
Q ss_pred HHHHHHHcCCCCC
Q 014507 192 TLLAMKRRGFICD 204 (423)
Q Consensus 192 ~~~~m~~~g~~p~ 204 (423)
+.+.+.+.|..++
T Consensus 149 iv~~Ll~~gadin 161 (477)
T PHA02878 149 ITKLLLSYGADIN 161 (477)
T ss_pred HHHHHHHcCCCCC
Confidence 4444445554443
No 494
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.11 E-value=7.8e+02 Score=24.37 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEEI 231 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m 231 (423)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555555444
No 495
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.90 E-value=7.7e+02 Score=24.28 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=22.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
+.+.|+..+......++... .|+...|..++++....
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc
Confidence 34556666666665555442 57777777777666543
No 496
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.80 E-value=5.1e+02 Score=22.16 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHHHHH--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 243 YGSMVMAYVR--AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 243 ~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
|..++.++-. .++++.|.+.+ -+..+.|+ .-..++.++...|+.+.|.++++.+.-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 4445555443 35555665555 22222222 22246677777788888888887765321 122333333333
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 359 (423)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 55677888877766554311 1346666666666443
No 497
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=21.42 E-value=6.3e+02 Score=23.04 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 014507 191 NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP 237 (423)
Q Consensus 191 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (423)
++-.-..+.|+..|...+..++.. ..|++..|+..++.+...|-.
T Consensus 196 rL~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~ 240 (346)
T KOG0989|consen 196 RLEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKR 240 (346)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcc
Confidence 333333455777777777766653 467777777777777665433
No 498
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.41 E-value=8e+02 Score=24.27 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHhccCCCCCHHHHHHHHHHh
Q 014507 108 KQIICVSPETGNLSDLLAAWVRF 130 (423)
Q Consensus 108 ~~ll~~~~~~g~~~~a~~~~~~~ 130 (423)
..++.-|.+.+++++|+.++..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Confidence 35677888899999999998887
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=6.4e+02 Score=23.13 Aligned_cols=191 Identities=12% Similarity=-0.010 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCC
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL-GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYVG 274 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~ 274 (423)
.+..|...++.|..+ +...+++-.+..++..+. |-.--...+-....-|++.||-+.|.+.+++..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 455566666666554 233345555555555443 2111234677778889999999999988877654 466666
Q ss_pred HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 275 SEVYKALLRG-YSMNGNSEGAQRVFEAIQFAGITP----DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 275 ~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
...+..-+.. |....-+.+-.+..+.+.+.|..= -..+|..+-. ....++.+|-.+|-+....=-.-...+|.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcccccceecccHH
Confidence 6555443333 333333455555556666665422 2345555433 34457889999888776421111122333
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507 350 -----LILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 350 -----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 394 (423)
.++.+.....+.+--.++.+--.-.++-+.......++..+..+.
T Consensus 221 ~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~ 270 (393)
T KOG0687|consen 221 TFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECD 270 (393)
T ss_pred HHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhcc
Confidence 334444444554444444332222233333344455555555543
No 500
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.32 E-value=91 Score=20.46 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhcccCCcCC
Q 014507 395 VVEEVEHVLREYGLRETYSK 414 (423)
Q Consensus 395 ~~~~A~~~~~~m~~~~~~~~ 414 (423)
+++.|...|.++...+.+|.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~ 59 (63)
T smart00804 40 DYERALKNFTELKSEGSIPP 59 (63)
T ss_pred CHHHHHHHHHHHHhcCCCCh
Done!