Query 014507
Match_columns 423
No_of_seqs 444 out of 2765
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3E-34 1E-38 274.2 26.6 205 154-358 9-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.2E-34 7.4E-39 275.2 24.8 207 187-393 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 6.2E-31 2.1E-35 259.7 31.3 353 46-408 95-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.8E-30 6.3E-35 256.3 31.7 335 46-390 211-594 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.3E-24 7.9E-29 201.2 34.8 355 43-409 7-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.6E-22 2.6E-26 184.1 36.1 317 86-409 12-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 8.7E-21 3E-25 180.3 36.8 300 102-409 24-358 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 8.4E-20 2.9E-24 173.5 30.7 323 75-406 27-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.4E-20 4.7E-25 181.9 23.4 353 45-409 16-478 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 7E-18 2.4E-22 154.7 36.9 300 103-409 2-335 (359)
11 2gw1_A Mitochondrial precursor 99.8 4.6E-18 1.6E-22 164.1 29.3 301 103-409 5-401 (514)
12 3spa_A Mtrpol, DNA-directed RN 99.8 2E-20 6.7E-25 184.4 11.8 114 242-355 129-246 (1134)
13 3hym_B Cell division cycle pro 99.8 3.3E-17 1.1E-21 148.6 30.3 287 105-397 23-322 (330)
14 1fch_A Peroxisomal targeting s 99.8 9.9E-18 3.4E-22 154.7 27.1 286 114-404 35-354 (368)
15 3fp2_A TPR repeat-containing p 99.8 6.6E-18 2.3E-22 164.1 26.0 352 46-409 36-491 (537)
16 3hym_B Cell division cycle pro 99.8 8.7E-17 3E-21 145.8 31.3 273 131-409 18-299 (330)
17 4eqf_A PEX5-related protein; a 99.8 5.9E-18 2E-22 156.3 23.1 266 134-405 64-352 (365)
18 3spa_A Mtrpol, DNA-directed RN 99.8 7.8E-20 2.7E-24 180.3 10.8 129 274-406 126-258 (1134)
19 3ieg_A DNAJ homolog subfamily 99.8 6.9E-16 2.4E-20 141.4 33.8 297 89-392 19-352 (359)
20 3cv0_A Peroxisome targeting si 99.8 1.5E-16 5.1E-21 144.0 26.8 265 136-406 22-312 (327)
21 1b89_A Protein (clathrin heavy 99.8 6.2E-18 2.1E-22 154.9 16.4 280 89-403 19-305 (449)
22 3fp2_A TPR repeat-containing p 99.8 9E-16 3.1E-20 149.0 30.3 301 103-410 24-408 (537)
23 4eqf_A PEX5-related protein; a 99.8 6.7E-17 2.3E-21 149.1 21.1 266 102-370 63-352 (365)
24 1fch_A Peroxisomal targeting s 99.8 2.5E-16 8.5E-21 145.3 23.9 264 103-370 63-355 (368)
25 3cv0_A Peroxisome targeting si 99.7 5.9E-16 2E-20 140.1 24.6 262 105-371 22-312 (327)
26 3mkr_A Coatomer subunit epsilo 99.7 9.2E-15 3.2E-19 130.3 29.8 269 116-403 11-288 (291)
27 3mkr_A Coatomer subunit epsilo 99.7 3.4E-15 1.2E-19 133.1 25.5 252 143-408 7-263 (291)
28 1b89_A Protein (clathrin heavy 99.7 7.5E-17 2.6E-21 147.8 14.4 252 116-406 15-266 (449)
29 3uq3_A Heat shock protein STI1 99.7 2.1E-14 7.3E-19 125.1 24.6 222 172-407 7-234 (258)
30 2xm6_A Protein corresponding t 99.7 4E-13 1.4E-17 129.0 34.9 335 48-410 56-433 (490)
31 2pl2_A Hypothetical conserved 99.7 3.5E-14 1.2E-18 120.8 22.5 210 168-407 3-212 (217)
32 2pl2_A Hypothetical conserved 99.7 2.8E-14 9.5E-19 121.5 21.8 167 237-409 2-180 (217)
33 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5.2E-18 119.6 26.8 225 136-374 6-236 (258)
34 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.3E-17 115.2 32.5 222 169-408 5-250 (273)
35 2ho1_A Type 4 fimbrial biogene 99.6 3.3E-13 1.1E-17 117.3 27.6 201 170-374 37-238 (252)
36 2xm6_A Protein corresponding t 99.6 7E-12 2.4E-16 120.4 39.3 302 88-410 58-397 (490)
37 2vq2_A PILW, putative fimbrial 99.6 6.5E-13 2.2E-17 113.0 27.6 202 169-373 7-210 (225)
38 2ho1_A Type 4 fimbrial biogene 99.6 3.2E-13 1.1E-17 117.4 26.1 201 205-409 37-238 (252)
39 2vq2_A PILW, putative fimbrial 99.6 9.3E-13 3.2E-17 112.0 26.6 203 204-409 7-211 (225)
40 3u4t_A TPR repeat-containing p 99.6 3.9E-13 1.4E-17 118.2 24.9 232 173-408 6-249 (272)
41 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6E-18 118.2 21.9 202 168-374 21-222 (243)
42 1ouv_A Conserved hypothetical 99.6 8.7E-12 3E-16 109.8 32.3 223 135-375 6-252 (273)
43 2q7f_A YRRB protein; TPR, prot 99.6 2.5E-13 8.4E-18 117.2 20.3 201 204-409 22-222 (243)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.4E-14 2.9E-18 122.6 17.6 224 170-403 43-269 (275)
45 2ooe_A Cleavage stimulation fa 99.6 3.2E-12 1.1E-16 124.0 30.3 182 223-409 256-454 (530)
46 2h6f_A Protein farnesyltransfe 99.6 8.7E-13 3E-17 121.7 24.8 228 171-406 98-344 (382)
47 3u4t_A TPR repeat-containing p 99.6 3.1E-12 1.1E-16 112.4 25.7 246 138-388 6-263 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-13 1.8E-17 117.5 20.6 225 180-410 15-245 (275)
49 1xi4_A Clathrin heavy chain; a 99.5 4E-12 1.4E-16 129.9 29.0 307 46-405 996-1305(1630)
50 2h6f_A Protein farnesyltransfe 99.5 8.3E-12 2.8E-16 115.1 28.5 246 137-391 99-364 (382)
51 4g1t_A Interferon-induced prot 99.5 1.7E-12 5.9E-17 123.8 23.0 330 75-409 52-459 (472)
52 4g1t_A Interferon-induced prot 99.5 3.2E-11 1.1E-15 115.0 30.4 300 104-408 51-400 (472)
53 2ooe_A Cleavage stimulation fa 99.5 1.5E-11 5E-16 119.3 28.1 217 187-408 255-491 (530)
54 4a1s_A PINS, partner of inscut 99.5 9E-13 3.1E-17 123.3 18.7 235 172-406 88-369 (411)
55 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-11 5.4E-16 101.2 23.4 166 169-338 4-169 (184)
56 3sf4_A G-protein-signaling mod 99.5 3.1E-12 1E-16 119.2 19.9 267 107-373 12-335 (406)
57 3sf4_A G-protein-signaling mod 99.5 2E-12 6.9E-17 120.4 18.5 272 134-406 8-333 (406)
58 1xi4_A Clathrin heavy chain; a 99.5 1.4E-10 4.9E-15 118.7 32.7 310 46-401 1060-1376(1630)
59 3ro2_A PINS homolog, G-protein 99.5 2.5E-12 8.7E-17 116.1 18.4 268 140-408 10-331 (338)
60 3nf1_A KLC 1, kinesin light ch 99.5 8.5E-13 2.9E-17 118.2 15.0 240 168-408 25-306 (311)
61 4abn_A Tetratricopeptide repea 99.5 5.6E-12 1.9E-16 120.3 21.5 211 186-404 84-316 (474)
62 2ond_A Cleavage stimulation fa 99.5 1.2E-10 4E-15 104.6 29.0 217 153-374 34-270 (308)
63 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-11 5.2E-16 116.6 24.0 339 45-409 13-387 (452)
64 3vtx_A MAMA; tetratricopeptide 99.5 4.1E-11 1.4E-15 98.7 23.6 167 204-374 4-170 (184)
65 4a1s_A PINS, partner of inscut 99.5 3.6E-12 1.2E-16 119.2 19.0 270 105-374 49-372 (411)
66 2ond_A Cleavage stimulation fa 99.5 1.7E-10 5.9E-15 103.5 29.2 233 104-339 8-270 (308)
67 3ulq_A Response regulator aspa 99.4 1.7E-11 5.7E-16 113.7 22.1 230 176-408 109-367 (383)
68 3ro2_A PINS homolog, G-protein 99.4 1.4E-11 4.7E-16 111.3 20.1 269 106-374 7-332 (338)
69 4abn_A Tetratricopeptide repea 99.4 3.6E-11 1.2E-15 114.7 20.2 198 167-370 99-317 (474)
70 3e4b_A ALGK; tetratricopeptide 99.4 6.3E-11 2.2E-15 112.3 20.7 306 86-410 16-352 (452)
71 3q15_A PSP28, response regulat 99.4 2.8E-10 9.5E-15 105.3 24.5 290 115-408 23-364 (378)
72 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.8E-15 94.1 20.7 163 172-338 10-172 (186)
73 3nf1_A KLC 1, kinesin light ch 99.3 6.2E-12 2.1E-16 112.6 12.2 204 169-373 68-306 (311)
74 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.1E-15 93.6 20.6 163 242-408 10-172 (186)
75 1hz4_A MALT regulatory protein 99.3 9.7E-10 3.3E-14 101.3 26.2 290 112-409 22-349 (373)
76 4gyw_A UDP-N-acetylglucosamine 99.3 3.8E-10 1.3E-14 112.3 21.6 166 169-338 8-173 (723)
77 3edt_B KLC 2, kinesin light ch 99.3 8.1E-11 2.8E-15 103.5 14.6 227 181-408 12-280 (283)
78 4i17_A Hypothetical protein; T 99.3 1.3E-09 4.3E-14 93.1 21.6 195 168-374 5-209 (228)
79 4gyw_A UDP-N-acetylglucosamine 99.3 5.7E-10 2E-14 111.0 21.7 165 204-373 8-173 (723)
80 1hz4_A MALT regulatory protein 99.2 4.5E-09 1.5E-13 96.8 25.4 269 139-407 18-320 (373)
81 4i17_A Hypothetical protein; T 99.2 3.8E-09 1.3E-13 90.1 23.0 194 204-409 6-209 (228)
82 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4.2E-15 102.4 13.5 204 169-373 42-280 (283)
83 3ulq_A Response regulator aspa 99.2 1.4E-09 4.9E-14 100.6 20.0 227 144-373 112-367 (383)
84 3mv2_B Coatomer subunit epsilo 99.1 2.6E-08 8.9E-13 87.5 23.7 242 116-380 25-286 (310)
85 3q15_A PSP28, response regulat 99.1 1.1E-08 3.6E-13 94.6 22.0 226 144-373 110-364 (378)
86 2fo7_A Synthetic consensus TPR 99.1 1E-08 3.5E-13 78.8 17.9 127 208-337 4-130 (136)
87 2fo7_A Synthetic consensus TPR 99.1 1.3E-08 4.3E-13 78.2 17.9 130 172-304 3-132 (136)
88 1qqe_A Vesicular transport pro 99.1 7.5E-09 2.6E-13 92.0 18.4 206 185-407 32-267 (292)
89 1qqe_A Vesicular transport pro 99.1 7.7E-09 2.6E-13 91.9 18.0 197 174-372 41-267 (292)
90 3urz_A Uncharacterized protein 99.0 2.5E-08 8.7E-13 83.7 18.1 131 246-384 60-194 (208)
91 3qky_A Outer membrane assembly 99.0 3.6E-08 1.2E-12 85.9 18.9 210 168-399 13-251 (261)
92 3qky_A Outer membrane assembly 99.0 3.1E-08 1.1E-12 86.3 17.9 186 204-410 14-225 (261)
93 3urz_A Uncharacterized protein 99.0 5E-08 1.7E-12 81.9 18.4 172 170-350 4-195 (208)
94 3rjv_A Putative SEL1 repeat pr 99.0 1.7E-07 5.9E-12 78.8 21.6 177 188-376 4-199 (212)
95 3mv2_B Coatomer subunit epsilo 99.0 1.4E-07 4.7E-12 82.9 21.4 214 175-409 50-282 (310)
96 3dra_A Protein farnesyltransfe 98.9 1E-06 3.4E-11 78.1 25.6 217 187-408 50-286 (306)
97 3rjv_A Putative SEL1 repeat pr 98.9 3.8E-07 1.3E-11 76.7 21.4 177 222-410 3-198 (212)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 1.4E-07 4.9E-12 84.3 19.7 187 212-401 43-253 (307)
99 2pzi_A Probable serine/threoni 98.9 2.3E-08 7.9E-13 99.7 15.5 184 216-406 402-602 (681)
100 3dra_A Protein farnesyltransfe 98.9 7.3E-06 2.5E-10 72.5 28.8 220 150-374 48-287 (306)
101 3qou_A Protein YBBN; thioredox 98.9 1.5E-07 5E-12 83.4 18.0 164 169-336 116-281 (287)
102 2pzi_A Probable serine/threoni 98.9 5.7E-08 1.9E-12 96.8 16.7 174 146-325 402-583 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.9E-07 1.7E-11 76.8 20.3 185 170-375 4-214 (225)
104 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.9E-12 92.7 18.5 154 148-305 2-158 (568)
105 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.7E-12 83.5 17.2 165 204-372 116-282 (287)
106 2vsy_A XCC0866; transferase, g 98.8 1.8E-07 6.3E-12 91.3 19.1 154 183-340 2-158 (568)
107 2r5s_A Uncharacterized protein 98.8 8.9E-08 3E-12 78.0 14.3 158 175-336 11-170 (176)
108 4e6h_A MRNA 3'-END-processing 98.8 5E-06 1.7E-10 81.9 29.1 334 73-410 65-534 (679)
109 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.6E-07 1.2E-11 77.6 18.5 186 204-411 3-215 (225)
110 4ga2_A E3 SUMO-protein ligase 98.8 3.1E-08 1.1E-12 78.4 10.4 109 181-292 8-116 (150)
111 2r5s_A Uncharacterized protein 98.8 1.1E-07 3.7E-12 77.4 13.8 158 210-371 11-170 (176)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 4.8E-07 1.6E-11 80.8 18.7 174 117-302 29-222 (307)
113 3u3w_A Transcriptional activat 98.7 6.8E-06 2.3E-10 72.7 24.7 161 212-372 82-264 (293)
114 3u3w_A Transcriptional activat 98.7 6.8E-06 2.3E-10 72.7 24.4 162 245-406 80-263 (293)
115 2qfc_A PLCR protein; TPR, HTH, 98.7 5.7E-06 1.9E-10 73.2 23.9 166 206-372 76-264 (293)
116 4ga2_A E3 SUMO-protein ligase 98.7 4.3E-07 1.5E-11 71.7 14.4 114 173-289 34-148 (150)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.6E-06 9E-11 71.2 19.4 127 207-338 8-149 (213)
118 3q7a_A Farnesyltransferase alp 98.7 1.2E-05 3.9E-10 72.2 24.2 217 186-407 70-329 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.1E-06 7E-11 71.9 18.5 127 173-304 9-150 (213)
120 1a17_A Serine/threonine protei 98.7 2E-06 6.7E-11 68.6 17.2 127 207-336 15-143 (166)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 5.8E-06 2E-10 73.2 21.8 166 241-406 76-263 (293)
122 2c2l_A CHIP, carboxy terminus 98.6 4.8E-06 1.7E-10 73.2 20.6 197 204-415 3-205 (281)
123 1a17_A Serine/threonine protei 98.6 2E-06 6.8E-11 68.6 16.6 130 170-302 13-144 (166)
124 1na0_A Designed protein CTPR3; 98.6 1.9E-06 6.5E-11 64.8 15.4 96 171-268 10-105 (125)
125 1na0_A Designed protein CTPR3; 98.6 3.4E-06 1.2E-10 63.3 16.4 96 206-303 10-105 (125)
126 3gw4_A Uncharacterized protein 98.6 7.7E-07 2.6E-11 73.8 13.4 119 182-301 4-133 (203)
127 4gco_A Protein STI-1; structur 98.6 2.7E-06 9.2E-11 64.8 15.2 96 172-269 15-110 (126)
128 3q7a_A Farnesyltransferase alp 98.6 0.0001 3.5E-09 66.0 27.2 218 152-374 71-331 (349)
129 3gw4_A Uncharacterized protein 98.6 1.2E-06 4.1E-11 72.6 14.0 157 216-373 3-175 (203)
130 2vyi_A SGTA protein; chaperone 98.6 3.5E-06 1.2E-10 63.8 15.2 93 208-302 15-107 (131)
131 2uy1_A Cleavage stimulation fa 98.5 0.00015 5.2E-09 69.0 29.3 151 118-269 28-242 (493)
132 4e6h_A MRNA 3'-END-processing 98.5 1.7E-05 5.7E-10 78.2 23.1 230 155-390 329-584 (679)
133 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 71.5 12.2 121 181-304 21-144 (177)
134 4gco_A Protein STI-1; structur 98.5 5E-06 1.7E-10 63.3 15.3 95 207-303 15-109 (126)
135 3gyz_A Chaperone protein IPGC; 98.5 6.7E-06 2.3E-10 64.8 16.4 102 275-381 36-138 (151)
136 2vyi_A SGTA protein; chaperone 98.5 3.3E-06 1.1E-10 64.0 14.4 119 169-290 11-129 (131)
137 2c2l_A CHIP, carboxy terminus 98.5 1E-06 3.4E-11 77.7 12.6 195 169-374 3-199 (281)
138 2lni_A Stress-induced-phosphop 98.5 2.6E-06 8.9E-11 65.0 13.5 97 170-268 16-112 (133)
139 2lni_A Stress-induced-phosphop 98.5 5.2E-06 1.8E-10 63.2 15.1 96 241-338 17-112 (133)
140 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4.1E-11 71.1 11.9 120 217-339 22-144 (177)
141 3gyz_A Chaperone protein IPGC; 98.5 9.5E-06 3.3E-10 63.9 16.4 95 207-303 38-132 (151)
142 4f3v_A ESX-1 secretion system 98.5 1.3E-05 4.3E-10 69.5 17.9 187 182-374 18-237 (282)
143 4f3v_A ESX-1 secretion system 98.5 5.2E-06 1.8E-10 71.9 15.0 190 217-410 18-238 (282)
144 1p5q_A FKBP52, FK506-binding p 98.4 6.2E-06 2.1E-10 74.6 16.0 87 241-329 197-283 (336)
145 1p5q_A FKBP52, FK506-binding p 98.4 8E-06 2.7E-10 73.8 16.5 86 277-364 198-283 (336)
146 1elw_A TPR1-domain of HOP; HOP 98.4 2.4E-05 8.2E-10 57.9 15.9 95 172-268 6-100 (118)
147 2fbn_A 70 kDa peptidylprolyl i 98.4 8.2E-07 2.8E-11 73.6 8.2 57 177-234 11-67 (198)
148 2vgx_A Chaperone SYCD; alterna 98.4 5.3E-06 1.8E-10 65.2 12.2 99 274-374 20-118 (148)
149 2vgx_A Chaperone SYCD; alterna 98.4 2.4E-06 8.2E-11 67.2 10.2 56 211-267 27-82 (148)
150 1elw_A TPR1-domain of HOP; HOP 98.4 3.2E-05 1.1E-09 57.2 15.7 97 205-303 4-100 (118)
151 3upv_A Heat shock protein STI1 98.3 1.5E-05 5E-10 60.4 13.8 95 172-268 6-100 (126)
152 3upv_A Heat shock protein STI1 98.3 2.3E-05 7.8E-10 59.3 14.8 26 311-336 73-98 (126)
153 2fbn_A 70 kDa peptidylprolyl i 98.3 1.6E-06 5.5E-11 71.8 8.8 132 277-410 40-187 (198)
154 4b4t_Q 26S proteasome regulato 98.3 4.9E-05 1.7E-09 71.0 20.1 95 311-405 136-241 (434)
155 2kck_A TPR repeat; tetratricop 98.3 1.3E-05 4.6E-10 58.7 12.5 98 170-269 6-106 (112)
156 1elr_A TPR2A-domain of HOP; HO 98.3 1.6E-05 5.3E-10 60.2 12.4 96 207-303 6-107 (131)
157 3q49_B STIP1 homology and U bo 98.3 3.6E-05 1.2E-09 59.0 14.5 96 170-267 9-104 (137)
158 2uy1_A Cleavage stimulation fa 98.3 0.0011 3.9E-08 62.9 27.7 336 47-408 26-412 (493)
159 4gcn_A Protein STI-1; structur 98.3 3.3E-05 1.1E-09 58.8 14.0 59 208-267 11-69 (127)
160 4gcn_A Protein STI-1; structur 98.3 2.8E-05 9.6E-10 59.2 13.5 59 243-302 11-69 (127)
161 1elr_A TPR2A-domain of HOP; HO 98.3 1.7E-05 5.8E-10 60.0 12.3 108 277-387 6-119 (131)
162 3dss_A Geranylgeranyl transfer 98.2 0.00061 2.1E-08 60.7 23.5 99 186-287 90-191 (331)
163 4b4t_Q 26S proteasome regulato 98.2 9.4E-05 3.2E-09 69.0 19.5 165 173-337 58-243 (434)
164 2xcb_A PCRH, regulatory protei 98.2 2.5E-05 8.6E-10 60.7 13.1 92 175-268 23-114 (142)
165 3q49_B STIP1 homology and U bo 98.2 4.7E-05 1.6E-09 58.4 14.5 96 240-337 9-104 (137)
166 2dba_A Smooth muscle cell asso 98.2 7.9E-05 2.7E-09 57.7 16.0 100 168-270 26-129 (148)
167 2xcb_A PCRH, regulatory protei 98.2 2.9E-05 1E-09 60.3 13.0 92 209-302 22-113 (142)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 3.7E-05 1.3E-09 61.3 13.8 98 170-269 11-108 (164)
169 3sz7_A HSC70 cochaperone (SGT) 98.2 6E-05 2E-09 60.0 14.9 95 277-373 13-107 (164)
170 2kck_A TPR repeat; tetratricop 98.2 2.5E-05 8.4E-10 57.3 11.0 17 215-231 16-32 (112)
171 2dba_A Smooth muscle cell asso 98.1 0.00014 4.8E-09 56.3 15.9 97 274-373 27-127 (148)
172 3dss_A Geranylgeranyl transfer 98.1 0.0039 1.3E-07 55.5 27.4 133 118-253 44-192 (331)
173 3ro3_A PINS homolog, G-protein 98.1 2.6E-05 8.8E-10 61.4 11.3 129 208-336 12-155 (164)
174 3ro3_A PINS homolog, G-protein 98.1 3.4E-05 1.2E-09 60.7 11.6 95 242-336 11-115 (164)
175 1hxi_A PEX5, peroxisome target 98.1 5.7E-05 2E-09 56.8 11.6 94 174-269 21-114 (121)
176 1hxi_A PEX5, peroxisome target 98.0 5.4E-05 1.8E-09 57.0 11.2 90 211-302 23-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00014 4.8E-09 68.7 15.1 123 240-365 268-405 (457)
178 1wao_1 Serine/threonine protei 98.0 2.9E-05 9.9E-10 73.8 10.1 121 176-299 12-134 (477)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00013 4.3E-09 68.9 14.5 87 241-330 318-405 (457)
180 1wao_1 Serine/threonine protei 98.0 2.7E-05 9.3E-10 73.9 9.8 121 211-334 12-134 (477)
181 2xev_A YBGF; tetratricopeptide 97.9 0.00037 1.3E-08 52.5 14.3 22 246-267 45-66 (129)
182 2xev_A YBGF; tetratricopeptide 97.9 0.00059 2E-08 51.3 15.3 94 175-270 7-106 (129)
183 1ihg_A Cyclophilin 40; ppiase 97.9 0.00019 6.6E-09 65.6 14.1 27 207-233 225-251 (370)
184 1ihg_A Cyclophilin 40; ppiase 97.9 0.00016 5.6E-09 66.1 13.2 138 171-330 224-361 (370)
185 3rkv_A Putative peptidylprolyl 97.9 0.00022 7.4E-09 56.6 12.3 61 277-338 65-125 (162)
186 3n71_A Histone lysine methyltr 97.8 0.00011 3.9E-09 69.5 11.7 127 284-410 318-465 (490)
187 3k9i_A BH0479 protein; putativ 97.8 5.7E-05 1.9E-09 56.4 7.8 85 253-338 3-89 (117)
188 3k9i_A BH0479 protein; putativ 97.8 4.9E-05 1.7E-09 56.7 7.4 84 184-268 4-89 (117)
189 3rkv_A Putative peptidylprolyl 97.8 0.00033 1.1E-08 55.5 12.7 63 241-304 64-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00015 5.1E-09 65.5 10.2 146 171-338 180-327 (338)
191 2l6j_A TPR repeat-containing p 97.7 4.3E-05 1.5E-09 56.0 5.3 93 310-405 4-103 (111)
192 1dce_A Protein (RAB geranylger 97.7 0.0041 1.4E-07 60.1 20.3 171 184-360 43-241 (567)
193 1klx_A Cysteine rich protein B 97.7 0.0017 5.7E-08 49.9 14.4 14 324-337 111-124 (138)
194 1klx_A Cysteine rich protein B 97.7 0.00074 2.5E-08 52.0 12.3 111 184-305 9-127 (138)
195 2hr2_A Hypothetical protein; a 97.7 0.001 3.6E-08 52.0 12.6 96 172-267 13-129 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00018 6.2E-09 64.9 9.5 148 205-374 179-328 (338)
197 3n71_A Histone lysine methyltr 97.6 0.00039 1.3E-08 65.8 11.9 62 312-373 395-463 (490)
198 2hr2_A Hypothetical protein; a 97.6 0.003 1E-07 49.4 14.9 96 206-301 12-128 (159)
199 1dce_A Protein (RAB geranylger 97.6 0.0078 2.7E-07 58.2 20.3 174 220-398 44-244 (567)
200 2l6j_A TPR repeat-containing p 97.6 0.00013 4.4E-09 53.4 6.2 90 169-261 3-99 (111)
201 1na3_A Designed protein CTPR2; 97.5 0.0022 7.4E-08 44.6 11.2 79 171-251 10-88 (91)
202 2kat_A Uncharacterized protein 97.4 0.0015 5.2E-08 48.1 10.4 78 259-338 4-81 (115)
203 2kat_A Uncharacterized protein 97.4 0.0013 4.5E-08 48.4 9.9 80 293-374 3-82 (115)
204 1na3_A Designed protein CTPR2; 97.4 0.0022 7.7E-08 44.5 10.7 63 206-269 10-72 (91)
205 3ma5_A Tetratricopeptide repea 97.2 0.0027 9.3E-08 45.5 8.9 64 169-233 6-69 (100)
206 3ma5_A Tetratricopeptide repea 97.1 0.003 1E-07 45.2 8.7 63 309-372 6-68 (100)
207 1zu2_A Mitochondrial import re 97.1 0.0019 6.6E-08 50.4 8.0 85 182-268 14-119 (158)
208 3mkq_A Coatomer beta'-subunit; 97.0 0.016 5.5E-07 58.6 16.4 156 178-372 607-763 (814)
209 1zu2_A Mitochondrial import re 97.0 0.0022 7.5E-08 50.1 7.4 71 216-288 13-93 (158)
210 3ly7_A Transcriptional activat 96.9 0.04 1.4E-06 49.4 15.3 71 274-348 276-346 (372)
211 3ly7_A Transcriptional activat 96.7 0.042 1.5E-06 49.2 14.6 72 308-383 275-346 (372)
212 3qwp_A SET and MYND domain-con 96.7 0.02 6.8E-07 53.2 12.7 92 282-373 294-399 (429)
213 3qww_A SET and MYND domain-con 96.6 0.0091 3.1E-07 55.5 10.0 87 287-373 310-410 (433)
214 3mkq_A Coatomer beta'-subunit; 96.6 0.14 4.7E-06 51.7 19.6 153 144-335 608-761 (814)
215 3qww_A SET and MYND domain-con 96.6 0.013 4.4E-07 54.4 10.4 86 322-407 310-409 (433)
216 3qwp_A SET and MYND domain-con 96.4 0.021 7.2E-07 53.0 11.2 92 316-407 293-398 (429)
217 3mkq_B Coatomer subunit alpha; 96.3 0.19 6.4E-06 39.8 14.3 130 248-407 13-142 (177)
218 2kc7_A BFR218_protein; tetratr 96.1 0.04 1.4E-06 38.7 9.0 53 180-233 10-63 (99)
219 2kc7_A BFR218_protein; tetratr 95.9 0.1 3.4E-06 36.6 10.2 58 212-270 7-65 (99)
220 1wy6_A Hypothetical protein ST 95.6 0.47 1.6E-05 35.4 16.1 138 218-377 20-157 (172)
221 3bee_A Putative YFRE protein; 95.6 0.11 3.9E-06 36.3 9.1 19 283-301 51-69 (93)
222 3bee_A Putative YFRE protein; 95.4 0.17 5.8E-06 35.4 9.5 48 186-234 25-72 (93)
223 2v5f_A Prolyl 4-hydroxylase su 95.3 0.26 8.8E-06 35.2 10.4 22 210-231 10-31 (104)
224 1pc2_A Mitochondria fission pr 95.1 0.13 4.3E-06 39.7 8.6 21 318-338 79-99 (152)
225 1pc2_A Mitochondria fission pr 95.1 0.36 1.2E-05 37.1 11.2 81 221-303 14-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 95.0 0.35 1.2E-05 34.5 10.6 67 168-234 3-75 (104)
227 1wy6_A Hypothetical protein ST 94.9 0.86 2.9E-05 34.1 14.5 139 252-412 19-157 (172)
228 3mkq_B Coatomer subunit alpha; 93.6 2.1 7.2E-05 33.8 18.6 131 212-372 12-142 (177)
229 3u64_A Protein TP_0956; tetrat 93.2 0.94 3.2E-05 39.0 10.9 93 221-315 179-282 (301)
230 1nzn_A CGI-135 protein, fissio 93.2 0.55 1.9E-05 34.7 8.3 81 291-373 17-102 (126)
231 3u64_A Protein TP_0956; tetrat 93.2 1.3 4.5E-05 38.1 11.7 94 186-281 179-283 (301)
232 4gns_B Protein CSD3, chitin bi 93.1 0.63 2.1E-05 46.1 10.9 55 352-407 344-398 (754)
233 2ff4_A Probable regulatory pro 93.0 1.8 6E-05 39.4 13.4 70 277-347 173-247 (388)
234 1nzn_A CGI-135 protein, fissio 92.7 0.82 2.8E-05 33.8 8.6 22 317-338 81-102 (126)
235 4h7y_A Dual specificity protei 92.6 2 6.7E-05 32.8 10.6 51 254-305 74-124 (161)
236 1qsa_A Protein (soluble lytic 92.4 8.4 0.00029 37.3 20.5 342 46-408 17-409 (618)
237 4h7y_A Dual specificity protei 91.9 1.3 4.5E-05 33.7 8.9 63 289-353 74-136 (161)
238 1v54_E Cytochrome C oxidase po 91.8 1.9 6.6E-05 30.2 8.9 63 325-388 25-87 (109)
239 3ffl_A Anaphase-promoting comp 91.3 1.9 6.5E-05 33.5 9.5 128 269-409 12-151 (167)
240 4fhn_B Nucleoporin NUP120; pro 91.2 7.3 0.00025 41.0 17.1 186 211-403 818-1043(1139)
241 2ff4_A Probable regulatory pro 91.0 1.2 4E-05 40.6 9.7 77 313-390 174-255 (388)
242 4ady_A RPN2, 26S proteasome re 90.5 9.8 0.00034 38.7 16.3 150 250-407 500-656 (963)
243 4gns_B Protein CSD3, chitin bi 90.4 1.6 5.5E-05 43.2 10.5 124 209-336 252-397 (754)
244 4b4t_P 26S proteasome regulato 90.1 12 0.0004 34.7 19.9 154 183-337 29-204 (445)
245 2y69_E Cytochrome C oxidase su 88.9 4 0.00014 30.4 8.9 62 326-388 69-130 (152)
246 1v54_E Cytochrome C oxidase po 88.7 3.5 0.00012 28.9 8.1 34 268-301 38-71 (109)
247 4b4t_P 26S proteasome regulato 87.9 17 0.00057 33.6 18.5 259 149-407 30-322 (445)
248 4fhn_B Nucleoporin NUP120; pro 86.8 16 0.00056 38.4 16.0 147 245-399 817-990 (1139)
249 2p58_C Putative type III secre 86.2 6.7 0.00023 27.4 8.3 51 284-340 49-99 (116)
250 2y69_E Cytochrome C oxidase su 84.8 6.5 0.00022 29.3 8.1 41 227-267 75-115 (152)
251 2uwj_G Type III export protein 84.3 6.4 0.00022 27.5 7.4 51 284-340 48-98 (115)
252 3o48_A Mitochondria fission 1 84.2 11 0.00037 28.0 10.0 67 307-373 37-106 (134)
253 1qsa_A Protein (soluble lytic 83.7 33 0.0011 33.2 22.8 253 140-408 77-347 (618)
254 3o48_A Mitochondria fission 1 83.3 12 0.00041 27.8 9.3 70 165-234 35-107 (134)
255 3lvg_A Clathrin heavy chain 1; 82.0 0.037 1.3E-06 51.1 -5.6 241 75-331 55-325 (624)
256 2p58_C Putative type III secre 81.8 11 0.00038 26.3 7.9 80 289-376 21-100 (116)
257 4ady_A RPN2, 26S proteasome re 80.1 55 0.0019 33.3 19.7 150 181-337 501-656 (963)
258 2uwj_G Type III export protein 79.2 10 0.00036 26.4 7.0 80 289-376 20-99 (115)
259 3lvg_A Clathrin heavy chain 1; 78.3 0.00058 2E-08 62.7 -18.4 259 120-408 41-319 (624)
260 4b4t_R RPN7, 26S proteasome re 77.8 18 0.00062 33.2 10.9 99 171-269 132-237 (429)
261 1y8m_A FIS1; mitochondria, unk 77.3 21 0.00071 26.9 10.9 71 307-379 36-109 (144)
262 1zbp_A Hypothetical protein VP 77.3 9.6 0.00033 32.3 7.9 56 178-234 5-60 (273)
263 3ffl_A Anaphase-promoting comp 76.5 6.6 0.00022 30.5 6.2 23 209-231 67-89 (167)
264 2d2s_A Exocyst complex compone 74.6 17 0.00058 30.2 8.8 28 378-405 89-116 (235)
265 4b4t_R RPN7, 26S proteasome re 72.7 28 0.00094 31.9 10.7 108 277-384 133-247 (429)
266 1zbp_A Hypothetical protein VP 71.5 19 0.00064 30.5 8.2 112 283-407 5-127 (273)
267 3txn_A 26S proteasome regulato 70.4 62 0.0021 29.2 22.9 23 211-233 105-127 (394)
268 1wdy_A 2-5A-dependent ribonucl 70.1 4.8 0.00016 34.0 4.7 240 140-404 7-274 (285)
269 1y8m_A FIS1; mitochondria, unk 69.0 34 0.0012 25.7 11.4 23 316-338 83-105 (144)
270 1k1a_A B-cell lymphoma 3-encod 64.4 13 0.00044 30.4 6.1 27 177-203 13-39 (241)
271 3esl_A Checkpoint serine/threo 64.1 55 0.0019 26.3 9.7 56 323-378 92-148 (202)
272 3eiq_C Programmed cell death p 62.6 84 0.0029 27.9 12.2 71 313-384 220-292 (358)
273 1wdy_A 2-5A-dependent ribonucl 62.2 4.7 0.00016 34.1 3.0 245 109-379 7-280 (285)
274 4g8k_A 2-5A-dependent ribonucl 58.3 23 0.00079 30.9 7.0 56 109-168 27-85 (337)
275 2fu4_A Ferric uptake regulatio 58.2 36 0.0012 22.4 6.4 60 335-395 7-67 (83)
276 2zu6_B Programmed cell death p 57.6 61 0.0021 28.1 9.2 210 172-390 5-247 (307)
277 3lpz_A GET4 (YOR164C homolog); 56.5 1E+02 0.0035 27.0 21.0 167 106-302 37-214 (336)
278 3esl_A Checkpoint serine/threo 56.3 76 0.0026 25.4 10.6 57 288-344 92-149 (202)
279 3eu9_A Huntingtin-interacting 55.5 7.4 0.00025 31.8 3.0 54 352-409 181-236 (240)
280 2keb_A DNA polymerase subunit 54.6 50 0.0017 22.8 6.3 56 329-386 28-88 (101)
281 2d2s_A Exocyst complex compone 53.9 86 0.003 25.9 9.2 89 176-267 24-118 (235)
282 2fe3_A Peroxide operon regulat 53.6 55 0.0019 24.5 7.4 60 335-395 12-71 (145)
283 3kea_A K1L; tropism, ANK repea 53.2 11 0.00038 32.2 3.9 18 283-300 166-183 (285)
284 2zu6_B Programmed cell death p 52.6 1.1E+02 0.0039 26.3 12.2 67 277-344 168-236 (307)
285 3eu9_A Huntingtin-interacting 52.2 5.9 0.0002 32.4 1.8 17 115-131 17-33 (240)
286 2xig_A Ferric uptake regulatio 49.9 80 0.0027 23.8 8.1 61 194-255 16-76 (150)
287 3eyy_A Putative iron uptake re 49.0 49 0.0017 24.8 6.5 58 336-395 10-67 (145)
288 1mzb_A Ferric uptake regulatio 48.7 58 0.002 24.0 6.8 36 325-360 33-68 (136)
289 3jxi_A Vanilloid receptor-rela 48.6 9.5 0.00033 31.8 2.6 22 387-408 229-250 (260)
290 3hra_A Ankyrin repeat family p 48.4 10 0.00035 30.0 2.7 15 365-379 158-172 (201)
291 2nsz_A Programmed cell death p 48.1 79 0.0027 23.2 9.0 64 277-341 9-74 (129)
292 3ltm_A Alpha-REP4; protein eng 47.2 1E+02 0.0035 24.3 19.1 122 239-373 63-184 (211)
293 3lpz_A GET4 (YOR164C homolog); 46.5 1.5E+02 0.0051 26.0 23.5 168 207-408 37-215 (336)
294 3ljn_A Hypothetical protein; a 45.8 12 0.0004 33.3 2.9 88 112-203 25-114 (364)
295 2wpv_A GET4, UPF0363 protein Y 45.5 1.5E+02 0.0051 25.7 21.4 169 207-409 35-217 (312)
296 3jxi_A Vanilloid receptor-rela 45.0 15 0.00051 30.6 3.3 57 142-198 9-74 (260)
297 4a1g_A Mitotic checkpoint seri 43.9 1E+02 0.0036 23.4 9.3 50 259-308 84-134 (152)
298 2w57_A Ferric uptake regulatio 42.9 69 0.0024 24.1 6.5 59 336-395 8-67 (150)
299 3kea_A K1L; tropism, ANK repea 42.2 29 0.001 29.4 4.8 39 116-154 40-78 (285)
300 2fe3_A Peroxide operon regulat 41.9 83 0.0028 23.5 6.8 58 196-254 13-70 (145)
301 3t8k_A Uncharacterized protein 41.9 37 0.0013 26.6 5.1 23 216-238 46-68 (186)
302 2xig_A Ferric uptake regulatio 41.8 1.1E+02 0.0037 23.0 7.4 13 291-303 42-54 (150)
303 3hra_A Ankyrin repeat family p 41.6 12 0.00041 29.6 2.1 13 117-129 15-27 (201)
304 1k1a_A B-cell lymphoma 3-encod 41.4 35 0.0012 27.7 5.0 179 212-404 13-204 (241)
305 2ijq_A Hypothetical protein; s 38.8 1.3E+02 0.0045 23.1 8.3 52 182-233 44-103 (161)
306 2ion_A PDCD4, programmed cell 38.6 1.3E+02 0.0043 22.8 9.0 24 244-267 13-36 (152)
307 3eyy_A Putative iron uptake re 38.4 80 0.0027 23.6 6.2 58 195-254 9-66 (145)
308 1mzb_A Ferric uptake regulatio 37.1 86 0.0029 23.1 6.1 59 196-255 9-68 (136)
309 3l6a_A Eukaryotic translation 36.9 1.4E+02 0.0046 26.6 8.3 24 138-161 15-38 (364)
310 2wvi_A Mitotic checkpoint seri 36.4 1.5E+02 0.005 22.9 9.7 50 259-308 79-129 (164)
311 3eiq_C Programmed cell death p 35.3 2.4E+02 0.0081 25.0 13.3 68 277-345 219-288 (358)
312 2wpv_A GET4, UPF0363 protein Y 35.1 2.2E+02 0.0076 24.6 19.5 141 241-400 34-188 (312)
313 3t8k_A Uncharacterized protein 34.4 74 0.0025 24.8 5.7 66 175-240 40-109 (186)
314 4b4t_S RPN3, 26S proteasome re 34.1 3E+02 0.01 25.8 10.2 65 170-234 231-299 (523)
315 2ion_A PDCD4, programmed cell 34.0 1.5E+02 0.0052 22.4 9.6 67 277-344 11-79 (152)
316 4gq2_M Nucleoporin NUP120; bet 33.7 2.4E+02 0.0081 28.9 10.6 108 281-394 816-950 (950)
317 3bu8_A Telomeric repeat-bindin 33.6 1.9E+02 0.0065 23.4 10.0 21 213-233 122-142 (235)
318 4aez_C MAD3, mitotic spindle c 33.4 90 0.0031 25.5 5.9 51 258-308 132-183 (223)
319 2keb_A DNA polymerase subunit 33.3 1.2E+02 0.0041 21.0 7.1 31 189-219 28-58 (101)
320 2nsz_A Programmed cell death p 33.3 1.4E+02 0.0048 21.8 10.4 63 243-306 10-74 (129)
321 3ygs_P Procaspase 9; apoptosis 32.7 61 0.0021 22.3 4.3 40 118-157 51-90 (97)
322 2rfa_A Transient receptor pote 32.3 35 0.0012 27.6 3.5 56 282-338 158-222 (232)
323 2o03_A Probable zinc uptake re 32.2 69 0.0024 23.4 4.8 45 316-360 16-60 (131)
324 3ltm_A Alpha-REP4; protein eng 31.6 1.9E+02 0.0063 22.7 18.6 17 204-220 94-110 (211)
325 4fke_A Aminopeptidase N; zinc 31.4 4.3E+02 0.015 26.8 15.6 159 208-373 689-859 (909)
326 3aji_A 26S proteasome non-ATPa 31.4 48 0.0016 26.6 4.3 19 177-195 10-28 (231)
327 4a1g_A Mitotic checkpoint seri 31.3 1.7E+02 0.0058 22.2 9.8 50 329-378 84-134 (152)
328 2w57_A Ferric uptake regulatio 31.3 1E+02 0.0035 23.2 5.7 59 196-255 8-67 (150)
329 4aez_C MAD3, mitotic spindle c 31.0 1.1E+02 0.0038 25.0 6.1 51 293-343 132-183 (223)
330 4ets_A Ferric uptake regulatio 30.9 1.2E+02 0.0043 23.1 6.3 59 196-255 24-84 (162)
331 4ets_A Ferric uptake regulatio 30.4 1.2E+02 0.0042 23.1 6.1 57 232-289 25-83 (162)
332 1wty_A Hypothetical protein TT 30.1 1.5E+02 0.0051 21.2 6.5 77 290-373 3-80 (119)
333 2fu4_A Ferric uptake regulatio 30.0 1.1E+02 0.0039 19.8 6.8 10 224-233 36-45 (83)
334 1ug3_A EIF4GI, eukaryotic prot 29.8 2E+02 0.0067 25.2 8.2 27 108-134 15-41 (339)
335 4gq2_M Nucleoporin NUP120; bet 29.5 4.6E+02 0.016 26.8 11.8 49 276-324 898-950 (950)
336 3mwm_A ZUR, putative metal upt 29.1 66 0.0023 23.9 4.3 45 316-360 19-63 (139)
337 3l6a_A Eukaryotic translation 28.7 2.5E+02 0.0085 24.9 8.6 68 241-309 13-82 (364)
338 2o03_A Probable zinc uptake re 28.7 1.2E+02 0.0042 22.0 5.7 14 256-269 26-39 (131)
339 3ltj_A Alpharep-4; protein eng 28.7 2E+02 0.007 22.2 21.2 17 204-220 89-105 (201)
340 2f6m_A Suppressor protein STP2 27.4 1.2E+02 0.0041 19.2 4.4 44 348-392 5-48 (65)
341 3e3v_A Regulatory protein RECX 26.7 2.2E+02 0.0076 22.0 9.9 50 292-342 50-99 (177)
342 2wvi_A Mitotic checkpoint seri 26.4 2.2E+02 0.0076 21.9 10.2 50 329-378 79-129 (164)
343 3ltj_A Alpharep-4; protein eng 26.0 2.3E+02 0.0078 21.9 20.0 19 238-256 88-106 (201)
344 2dzn_A Probable 26S proteasome 25.9 47 0.0016 26.6 3.2 19 387-405 178-196 (228)
345 3mwm_A ZUR, putative metal upt 25.1 1.1E+02 0.0038 22.6 4.9 13 222-234 30-42 (139)
346 1ug3_A EIF4GI, eukaryotic prot 25.0 77 0.0026 27.8 4.6 64 242-306 13-77 (339)
347 2r9g_A AAA ATPase, central reg 24.6 2.7E+02 0.0092 22.2 10.3 55 217-272 26-85 (204)
348 3pvs_A Replication-associated 24.4 4.1E+02 0.014 24.2 12.0 143 220-377 166-327 (447)
349 3f3f_C Nucleoporin NUP85; stru 24.1 2.8E+02 0.0096 26.3 8.2 53 169-223 515-567 (570)
350 4fke_A Aminopeptidase N; zinc 23.9 5.8E+02 0.02 25.9 15.5 157 244-407 690-858 (909)
351 3bge_A Predicted ATPase; struc 23.4 2.8E+02 0.0097 22.1 9.2 38 217-254 19-56 (201)
352 2r9g_A AAA ATPase, central reg 23.4 2.9E+02 0.0098 22.1 10.5 62 175-237 16-85 (204)
353 2rfa_A Transient receptor pote 23.0 94 0.0032 24.8 4.6 54 352-406 158-220 (232)
354 4g8k_A 2-5A-dependent ribonucl 22.4 1.2E+02 0.004 26.1 5.4 21 46-72 33-53 (337)
355 2rg8_A Programmed cell death p 22.1 92 0.0031 24.0 4.0 26 277-302 12-37 (165)
356 2b7e_A PRE-mRNA processing pro 21.9 47 0.0016 20.6 1.7 28 223-250 4-31 (59)
357 3kae_A CDC27, possible protein 21.9 2.9E+02 0.0099 21.6 7.9 26 380-405 114-139 (242)
358 2pnn_A Transient receptor pote 21.7 26 0.00089 29.4 0.8 19 387-405 237-255 (273)
359 2etb_A Transient receptor pote 21.0 54 0.0019 26.9 2.7 26 177-202 6-31 (256)
360 3f3f_C Nucleoporin NUP85; stru 20.9 3.6E+02 0.012 25.5 8.3 51 241-293 517-567 (570)
361 2yru_A Steroid receptor RNA ac 20.5 2.3E+02 0.0079 20.3 5.5 41 193-233 49-89 (118)
362 3ygs_P Procaspase 9; apoptosis 20.5 2.1E+02 0.0072 19.5 5.2 12 291-302 53-64 (97)
363 3qil_A Clathrin heavy chain 1; 20.4 1.1E+02 0.0036 22.3 3.6 49 175-226 37-85 (125)
364 3lxu_X Tripeptidyl-peptidase 2 20.3 4.6E+02 0.016 28.0 9.6 77 326-406 1265-1342(1354)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3e-34 Score=274.23 Aligned_cols=205 Identities=15% Similarity=0.132 Sum_probs=182.1
Q ss_pred HHHHHHHHhhcccCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 014507 154 LQVAELALLEESFEANI-RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN---------LKM 223 (423)
Q Consensus 154 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 223 (423)
++.+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34555666666666554 45888999999999999999999999999999999999999999988765 688
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507 224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 224 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 304 AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE 358 (423)
Q Consensus 304 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 358 (423)
.|+.||..||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.2e-34 Score=275.20 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------h
Q 014507 187 QNAENTLLAMKRRGFICDQ-VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM---------L 256 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------~ 256 (423)
..++.+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4566777788888776554 46889999999999999999999999999999999999999999988765 6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507 337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL 393 (423)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 393 (423)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-31 Score=259.68 Aligned_cols=353 Identities=10% Similarity=-0.105 Sum_probs=215.0
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhh--hhhhHHHHHHHHhccCCCCCHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKM--TKRCKAFVKQIICVSPETGNLSD 122 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~ 122 (423)
.+.|++++|+.. |++|. +..|+. .++..++.+|.+ ++.+.|..+|+++ ..++..+|+.++.+|.+.|++++
T Consensus 95 ~~~g~~~~A~~~--~~~~~--~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 95 LMQQQYKCAAFV--GEKVL--DITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHTTCHHHHHHH--HHHHH--HHHCCH--HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHccCchHHHHH--HHHHH--hhCCCc--hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHH
Confidence 678899999988 99888 456764 667777777775 4558888888887 45778888999999999999999
Q ss_pred HHHHHHHhcCC-------------------ChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc-----------------
Q 014507 123 LLAAWVRFMKP-------------------RRADWLAVLKQLKLMEHPLYLQVAELALLEESF----------------- 166 (423)
Q Consensus 123 a~~~~~~~~~p-------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------- 166 (423)
|+++|+++... +..+|+.++.++.+.|+.++|...++.+.+.++
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 248 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence 99999864322 367888888899999998888888877754332
Q ss_pred -----------------------------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507 167 -----------------------------------------------------EANIRDYTKIIHGYGKKMQIQNAENTL 193 (423)
Q Consensus 167 -----------------------------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 193 (423)
+++..+|+.++.++.+.|++++|.++|
T Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 267777888888888888888888888
Q ss_pred HHHHHcCCC---------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507 194 LAMKRRGFI---------------------------------CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK 240 (423)
Q Consensus 194 ~~m~~~g~~---------------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 240 (423)
+++.+.+.. .+..+|+.++..|.+.|++++|.++|+++.+.. +.+.
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 887765422 133444444455555555555555555444432 2234
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
.+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555555555555555555555555443321 44455555555555555555555555554432 22445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507 321 QMAGQSQKAYTAFQNMRKA----GLEPS--DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG 394 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 394 (423)
.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 5555555555555555442 33444 4455555555555555555555555554432 234455555555555555
Q ss_pred CHHHHHHHHHHhcc
Q 014507 395 VVEEVEHVLREYGL 408 (423)
Q Consensus 395 ~~~~A~~~~~~m~~ 408 (423)
++++|.++|+++.+
T Consensus 565 ~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 565 IPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555555443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-30 Score=256.33 Aligned_cols=335 Identities=11% Similarity=-0.020 Sum_probs=283.1
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcce-------------------------------------eeeeeccccch-H
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMF-------------------------------------TWIQIGPNITE-E 87 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~-------------------------------------~~~~l~~~~~~-~ 87 (423)
...|++++|+.. |++|.+. .|+.... +|+.++..|.+ +
T Consensus 211 ~~~g~~~~A~~~--~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 211 TNLSNFDRAKEC--YKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHTTCHHHHHHH--HHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHcCCHHHHHHH--HHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 677888888888 8888764 3432110 13344666664 4
Q ss_pred HHHHHhcCChhhhh--hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 014507 88 QKQAISQFPRKMTK--RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALL 162 (423)
Q Consensus 88 ~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 162 (423)
+.+.|..+|+++.+ ++..+|+.++..|.+.|++++|+++|+++. .| +..++..++.++.+.|+.++|..++..+.
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45888888888876 788889999999999999999999998873 33 56788899999999999999999988887
Q ss_pred hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507 163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 242 (423)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 543 567899999999999999999999999999886433 78899999999999999999999999999875 458899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITPD--ARMCALL 316 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l 316 (423)
|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 999999999999999999999999986543 7899999999999999999999999999875 66787 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF 390 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 390 (423)
+.+|.+.|++++|.+.|+++.+.+ +.+..+|..+...|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999999998864 3478999999999999999999999999999852 33566676666554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.3e-24 Score=201.18 Aligned_cols=355 Identities=12% Similarity=0.036 Sum_probs=299.6
Q ss_pred hhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCC
Q 014507 43 AKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETG 118 (423)
Q Consensus 43 ~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g 118 (423)
..+...|++++|+.. +.++.+ ..|+. ...+..+...+. .++.+.+..+++...+ .+..+|..+...+.+.|
T Consensus 7 ~~~~~~g~~~~A~~~--~~~~~~--~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERH--CMQLWR--QEPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHH--HHHHHH--HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHH--HHHHHH--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 344788999999988 777655 45664 233333444444 3455777777776654 45678999999999999
Q ss_pred CHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507 119 NLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA 195 (423)
Q Consensus 119 ~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (423)
++++|++.|+++ ..|+. .+|..+..++...|+.++|...+..+++.. +.+...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998 45654 579999999999999999999999888764 33556778888999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS 275 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 275 (423)
+.+.... +..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 9987433 68899999999999999999999999999875 446788999999999999999999999999886543 67
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
.++..+...+.+.|++++|.+.|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999863 3367889999999999999999999999998853 45788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
...|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999875 3456889999999999999999999999998763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=7.6e-22 Score=184.10 Aligned_cols=317 Identities=9% Similarity=-0.040 Sum_probs=273.4
Q ss_pred hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--c-CCChhhHHHHHHHHHhcCCchHHHHHHH
Q 014507 86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--M-KPRRADWLAVLKQLKLMEHPLYLQVAEL 159 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 159 (423)
.++.+.|...++.+.+ .+...+..+...+.+.|++++|...++.. . ..+..+|..+..++.+.|++++|...++
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556778877777654 34456777777888999999999999886 2 3456789999999999999999999999
Q ss_pred HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507 160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239 (423)
Q Consensus 160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 239 (423)
.+.+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 92 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 92 HALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 888764 345678999999999999999999999999987533 56678888999999999999999999999874 446
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINA 319 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 319 (423)
..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+..++..+..+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 789999999999999999999999999987544 67889999999999999999999999988753 2368899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 014507 320 YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 320 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 399 (423)
|...|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999853 235778999999999999999999999999886 356789999999999999999999
Q ss_pred HHHHHHhccc
Q 014507 400 EHVLREYGLR 409 (423)
Q Consensus 400 ~~~~~~m~~~ 409 (423)
.+.++++.+.
T Consensus 325 ~~~~~~al~~ 334 (388)
T 1w3b_A 325 VRLYRKALEV 334 (388)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.7e-21 Score=180.30 Aligned_cols=300 Identities=11% Similarity=0.021 Sum_probs=255.2
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--C-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRFM--K-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH 178 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 178 (423)
.+...|..+...+.+.|++++|++.|++++ . .+..++..+..++...|+.+.|...+..+++.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 456788889999999999999999999973 3 456889999999999999999999999988875 456888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFICDQ---VTLTVM------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
++.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|...|+++.+.. +.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999887432 33 555555 444889999999999999999865 4578899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL------- 316 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------- 316 (423)
..+..+|.+.|++++|...|+++.+.... +..++..+...|...|++++|...|+++.... +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 99999999999999999999999876433 68899999999999999999999999998652 2245555554
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 014507 317 -----INAYQMAGQSQKAYTAFQNMRKAGLEPS-----DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTL 386 (423)
Q Consensus 317 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 386 (423)
...+...|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999999873 454 4578888999999999999999999988752 3468899999
Q ss_pred HHHHHHcCCHHHHHHHHHHhccc
Q 014507 387 AAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
..+|.+.|++++|.+.|++..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999998663
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=8.4e-20 Score=173.50 Aligned_cols=323 Identities=11% Similarity=0.026 Sum_probs=241.8
Q ss_pred eeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHh
Q 014507 75 FTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKL 147 (423)
Q Consensus 75 ~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~ 147 (423)
..|..+...+.+ ++.+.|..+|+++.+ .+..+|..+..++...|++++|++.|++++ .| +..++..+...+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 344444444443 444666666666644 356678888888888899999999988873 34 35678888888888
Q ss_pred cCCchHHHHHHHHHhhcccCCCH---HHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507 148 MEHPLYLQVAELALLEESFEANI---RDYTKI------------IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMV 212 (423)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 212 (423)
.|+++.|...+..+.+... .+. ..+..+ ...+.+.|++++|...|+++.+... .+...+..+.
T Consensus 107 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 184 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRA 184 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 9999999888888876542 233 455544 3448888999999999999887643 3778888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH-----------
Q 014507 213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL----------- 281 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----------- 281 (423)
..|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 457888999999999999999999999998875432 44445444
Q ss_pred -HHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 282 -LRGYSMNGNSEGAQRVFEAIQFAGITPD-----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 282 -i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
...+.+.|++++|...|+.+.+. .|+ ...|..+..++.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 78888999999999999998874 454 4578888899999999999999999987742 33578889999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHh
Q 014507 356 EKENQLNRALEFLIDLERDGFMV-GKEASCTLAAW------------FKRLG-----VVEEVEHVLREY 406 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 406 (423)
...|++++|...++++.+. .| +...+..+..+ |...| +.+++.+.++++
T Consensus 340 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999998874 34 45556655532 33334 455667766653
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-20 Score=181.89 Aligned_cols=353 Identities=8% Similarity=-0.070 Sum_probs=287.8
Q ss_pred hhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCH
Q 014507 45 WSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNL 120 (423)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~ 120 (423)
+...|++++|+.. |+++.+.. |+. ..|..+..++.+ ++.+.|...++++.+ .+..+|..+..++.+.|++
T Consensus 16 ~~~~g~~~~A~~~--~~~al~~~--p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 16 FFRNKKYDDAIKY--YNWALELK--EDP--VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHTSCHHHHHHH--HHHHHHHC--CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhccHHHHHHH--HHHHHhcC--ccH--HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 3788999999999 99988765 654 677777777774 556888888888765 3567899999999999999
Q ss_pred HHHHHHHHHhc--CC-C---------------------------------------------------------------
Q 014507 121 SDLLAAWVRFM--KP-R--------------------------------------------------------------- 134 (423)
Q Consensus 121 ~~a~~~~~~~~--~p-~--------------------------------------------------------------- 134 (423)
++|+..|+++. .| +
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 99999998872 22 1
Q ss_pred ----------------hhhHHHHHHHHHh---cCCchHHHHHHHHHhh-----ccc--------CCCHHHHHHHHHHHHc
Q 014507 135 ----------------RADWLAVLKQLKL---MEHPLYLQVAELALLE-----ESF--------EANIRDYTKIIHGYGK 182 (423)
Q Consensus 135 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~ 182 (423)
...+......+.. .|+++.|...+..+.+ ..- +.+...+..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1112222222222 7889999998888877 211 2345678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
.|++++|...++++.+.... ...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999987544 8889999999999999999999999998865 44678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL- 341 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 341 (423)
+++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+...
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 9999987554 66789999999999999999999999988753 33678899999999999999999999999876321
Q ss_pred CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 342 EPS----DKCVALILSACEK---ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 342 ~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 122 3488899999999 999999999999998753 346788899999999999999999999987654
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=7e-18 Score=154.74 Aligned_cols=300 Identities=11% Similarity=0.006 Sum_probs=248.7
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507 103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179 (423)
Q Consensus 103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 179 (423)
|+..|..+...+...|++++|++.|++. ..| +..++..+...+...|+++.|...+....+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556777788888999999999999997 334 45788888899999999999999999888764 3467889999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVM------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS 245 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 245 (423)
+...|++++|...+++..+.... .+...+..+ ...+...|++++|...++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999887430 144445444 578889999999999999998875 457889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 014507 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA----------- 314 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----------- 314 (423)
+...+...|++++|...++++.+.... +..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543 78899999999999999999999999988753 22444333
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 315 -LLINAYQMAGQSQKAYTAFQNMRKAGLEPS-D----KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 315 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
.+...+.+.|++++|.+.+++..+.. |+ . ..+..+...+...|++++|...+++..+. .+.+..++..+..
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 23667899999999999999998743 43 2 23556778899999999999999999885 2447889999999
Q ss_pred HHHHcCCHHHHHHHHHHhccc
Q 014507 389 WFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.|.+.|++++|.+.|++..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.6e-18 Score=164.11 Aligned_cols=301 Identities=8% Similarity=-0.075 Sum_probs=248.7
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHH
Q 014507 103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGY 180 (423)
Q Consensus 103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 180 (423)
....|......+.+.|++++|++.|+++ ..|+..+|..+..++...|+++.|...+..+++.. +.+...|..+..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3455666777788899999999999998 46898999999999999999999999999888765 45678899999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC---------------------------------------------------------
Q 014507 181 GKKMQIQNAENTLLAMKRRGFIC--------------------------------------------------------- 203 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~p--------------------------------------------------------- 203 (423)
.+.|++++|...|+++.+.+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999887764210
Q ss_pred ---------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHH
Q 014507 204 ---------------------DQVTLTVMVVMYSK---AGNLKMAEETFEEIKL-----LGE--------PLDKRSYGSM 246 (423)
Q Consensus 204 ---------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~l 246 (423)
+...+......+.. .|++++|..+|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 12333333333343 7999999999999988 311 2235678889
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
...+...|++++|...++++.+.+.. ...+..+...+...|++++|...++.+.... +.+...|..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999886544 8889999999999999999999999998753 34678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998854 235678889999999999999999999999875 2346788999999999999999999999987
Q ss_pred ccc
Q 014507 407 GLR 409 (423)
Q Consensus 407 ~~~ 409 (423)
.+.
T Consensus 399 ~~~ 401 (514)
T 2gw1_A 399 IEL 401 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=184.44 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLREMDA---QEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN 318 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 318 (423)
||++||++|++.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 444444444444444444444444332 24444555555555555555555555555555555555555555555555
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 319 AYQMAGQ-SQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 319 ~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
++++.|+ .++|.++|++|.+.|+.||..||++++.++
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 5555444 234445555555555555555555444433
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.3e-17 Score=148.60 Aligned_cols=287 Identities=9% Similarity=-0.088 Sum_probs=230.4
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507 105 AFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG 181 (423)
Q Consensus 105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 181 (423)
..+..+...+...|++++|++.|++.. .| +...+..+...+...|+.+.|...+..+.+.. +.+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 445556666677799999999999873 33 33566677888889999999999988887754 346778888899999
Q ss_pred ccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014507 182 KKM-QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE 260 (423)
Q Consensus 182 ~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 260 (423)
..| ++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 999 999999999999887533 57788899999999999999999999998865 335667777999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG--------ITPDARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
..+++..+.... +...+..+...+...|++++|...+++..+.. ...+...|..+..++...|++++|.+.
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999887543 67889999999999999999999999887531 123467888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HHcCCHH
Q 014507 333 FQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF-KRLGVVE 397 (423)
Q Consensus 333 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~g~~~ 397 (423)
+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99988743 2356788889999999999999999999887752 34677788888877 4555543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=9.9e-18 Score=154.69 Aligned_cols=286 Identities=11% Similarity=0.013 Sum_probs=229.0
Q ss_pred cCCCCCHHHHHH-HHHHhc--CC-----ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC
Q 014507 114 SPETGNLSDLLA-AWVRFM--KP-----RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ 185 (423)
Q Consensus 114 ~~~~g~~~~a~~-~~~~~~--~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 185 (423)
+...|++++|++ .|++.. .| +...+..+...+...|+++.|...+..+++.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445588999998 888752 22 34668889999999999999999999988765 4578899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHH
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS---------------MVMAY 250 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~ 250 (423)
+++|...|+++.+.... +..++..+...|...|++++|.+.|+++.+... .+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999987543 788999999999999999999999999998642 22222221 23444
Q ss_pred HHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 329 (423)
...|++++|...++++.+..... +..++..+...|.+.|++++|...++++.... +.+...|..+..++...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998864332 58899999999999999999999999988753 34688999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------cCHHHHHHHHHHHHHcCCHHHH
Q 014507 330 YTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM----------VGKEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------~~~~~~~~l~~~~~~~g~~~~A 399 (423)
.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.... ....+|..+..+|.+.|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998743 345788999999999999999999999998764211 1268899999999999999999
Q ss_pred HHHHH
Q 014507 400 EHVLR 404 (423)
Q Consensus 400 ~~~~~ 404 (423)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 99876
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=6.6e-18 Score=164.09 Aligned_cols=352 Identities=9% Similarity=0.011 Sum_probs=272.3
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS 121 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~ 121 (423)
...|++++|+.. |++..+. .|+. ...|..+..++.+ ++.+.|...|+++.+ .+...|..+...+...|+++
T Consensus 36 ~~~g~~~~A~~~--~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 36 FTAKNFNEAIKY--YQYAIEL--DPNE-PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHTTCCC-CHHH--HHHHHHH--CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhccHHHHHHH--HHHHHhh--CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence 789999999999 9988764 4553 3566677777764 556888888888765 45678888999999999999
Q ss_pred HHHHHHHHh-cCCChhh---------------------------------------------------------------
Q 014507 122 DLLAAWVRF-MKPRRAD--------------------------------------------------------------- 137 (423)
Q Consensus 122 ~a~~~~~~~-~~p~~~~--------------------------------------------------------------- 137 (423)
+|++.|+.. ..|+...
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 999999643 2232111
Q ss_pred --HHHHHHHHHh------------cCCchHHHHHHHHHhhcccCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014507 138 --WLAVLKQLKL------------MEHPLYLQVAELALLEESFEAN-------IRDYTKIIHGYGKKMQIQNAENTLLAM 196 (423)
Q Consensus 138 --~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (423)
+..+..++.. .++++.|...+..+++.... + ..++..+...+...|++++|...+++.
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0001111111 13566777777777665422 2 235677778888999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 014507 197 KRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE 276 (423)
Q Consensus 197 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 276 (423)
.+.. |+...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+.... +..
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 345 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY 345 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 9874 457889999999999999999999999998875 457889999999999999999999999999886543 567
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-----LEPSDKCVALI 351 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~l 351 (423)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 89999999999999999999999998763 3467789999999999999999999999987631 11222334555
Q ss_pred HHHHHHc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 352 LSACEKE----------NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 352 i~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
...+... |++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6677777 99999999999998863 356788999999999999999999999987653
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.7e-17 Score=145.78 Aligned_cols=273 Identities=9% Similarity=-0.055 Sum_probs=233.4
Q ss_pred cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 131 MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV 210 (423)
Q Consensus 131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 210 (423)
...+...+..+...+...|+++.|..++..+.+.. +.+...+..++..+...|++++|...++++.+.... +...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34566778888888999999999999999888765 345667777888999999999999999999987433 6788999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 211 MVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 211 li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999865 446788999999999999999999999999886543 4567777999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 014507 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG--------LEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~ 361 (423)
++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998764 4478899999999999999999999999987631 123457899999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999998863 346788999999999999999999999987653
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=5.9e-18 Score=156.27 Aligned_cols=266 Identities=11% Similarity=-0.022 Sum_probs=217.9
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV 213 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 213 (423)
+...+..+...+.+.|+++.|...++.+++.. +.+...|..+...+...|++++|...|++..+.... +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44568888889999999999999999888765 457889999999999999999999999999887433 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLD-----------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKAL 281 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 281 (423)
.|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998753 22 233445688899999999999999999886433 268899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 361 (423)
...|.+.|++++|.+.+++..+.. +.+..+|+.+..+|...|++++|.+.|++..+.. +.+..++..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999988763 4478899999999999999999999999998843 23488899999999999999
Q ss_pred HHHHHHHHHHHHCC---CC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 362 NRALEFLIDLERDG---FM--------VGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 362 ~~a~~~~~~m~~~g---~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
++|...++++.+.. .. .+...+..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987641 11 1367899999999999999999988765
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=180.26 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQF---AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVAL 350 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 350 (423)
-..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346999999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 351 ILSACEKENQL-NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 351 li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++.++++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence 99999999984 78999999999999999999999999887775 444444444
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=6.9e-16 Score=141.36 Aligned_cols=297 Identities=10% Similarity=-0.013 Sum_probs=231.3
Q ss_pred HHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 014507 89 KQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALL 162 (423)
Q Consensus 89 ~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 162 (423)
.+.|...|+++.+ .+..+|..+...+...|++++|++.|++. ..| +...+..+...+...|+.+.|...+....
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3445555544432 23456777777888889999999999887 344 44778888888888999999988888877
Q ss_pred hcccC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 163 EESFE--ANIRDYTKI------------IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF 228 (423)
Q Consensus 163 ~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 228 (423)
+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+..+...+...|++++|...+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65421 234444444 5788899999999999999988744 37889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhCCCHHHHHH
Q 014507 229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK------------ALLRGYSMNGNSEGAQR 296 (423)
Q Consensus 229 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~ 296 (423)
++..+.. +.+..++..+...+...|++++|...+++..+.... +...+. .+...+.+.|++++|..
T Consensus 178 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 255 (359)
T 3ieg_A 178 KAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255 (359)
T ss_dssp HHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999875 557889999999999999999999999999876433 333333 33667999999999999
Q ss_pred HHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 297 VFEAIQFAGITPD-A----RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 297 ~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
.++.+.+.. |+ . ..+..+..++...|++++|.+.+++..+.. +.+..++..+...+...|++++|...++++
T Consensus 256 ~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 256 KYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988753 33 3 235567789999999999999999998853 336889999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHH
Q 014507 372 ERDGFMVGKEASCTLAAWFKR 392 (423)
Q Consensus 372 ~~~g~~~~~~~~~~l~~~~~~ 392 (423)
.+.. +-+......+..+...
T Consensus 333 ~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 333 QEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTC-TTCHHHHHHHHHHHHH
T ss_pred HhcC-CCChHHHHHHHHHHHH
Confidence 9853 2345666666655543
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.5e-16 Score=144.01 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=209.8
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY 215 (423)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 215 (423)
..+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 345556666677777777777777766654 34677788888888999999999999998888743 3678888888999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSM--------------VM-AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
...|++++|.+.+++..+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 99999999999999988753 2222233322 22 367788999999999999886543 7889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
+...+.+.|++++|.+.++++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988753 3468889999999999999999999999988743 3357889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 361 LNRALEFLIDLERDGFMV-----------GKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+++|.+.++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999988752211 4778999999999999999999998753
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.2e-18 Score=154.92 Aligned_cols=280 Identities=11% Similarity=0.042 Sum_probs=137.6
Q ss_pred HHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCC
Q 014507 89 KQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEA 168 (423)
Q Consensus 89 ~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (423)
.+.|..++++++.++ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|+++++..++...++. .+
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~ 92 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence 588888999997664 9999999999999999999999874 67779999999999999999999977766653 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..+..
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp ----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 67889999999999999999998885 367789999999999999999999999977 37999999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|++++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999988 27789999999999999999996655542 2344445579999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507 329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GFMV------GKEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~------~~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
|..+++...... +-....|+-+.-++++- ++++..+.++..... .++| +...|..++-.|.+.|+++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999987643 34567788887777764 455555555544433 4544 46678889999999999998877
Q ss_pred HH
Q 014507 402 VL 403 (423)
Q Consensus 402 ~~ 403 (423)
..
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=9e-16 Score=148.99 Aligned_cols=301 Identities=11% Similarity=-0.003 Sum_probs=232.6
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507 103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179 (423)
Q Consensus 103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 179 (423)
....|..+...+.+.|++++|++.|++. ..| +..++..+..++...|+++.|...+...++.. +.+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4456777777888889999999998887 334 45778888888888899999988888887765 4567788888888
Q ss_pred HHccCCHHHHHHHHHHHHHcC------------------------------------CCCCHH-----------------
Q 014507 180 YGKKMQIQNAENTLLAMKRRG------------------------------------FICDQV----------------- 206 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g------------------------------------~~p~~~----------------- 206 (423)
+...|++++|...|+.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 888899999988886432110 011111
Q ss_pred -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCChhH
Q 014507 207 -------------TLTVMVVMYS--------KAGNLKMAEETFEEIKLLGEPLD-------KRSYGSMVMAYVRAGMLDR 258 (423)
Q Consensus 207 -------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~~~~~~ 258 (423)
....+...+. ..|++++|..+|+++.+.. +.+ ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 1247889999999998764 223 2357777788889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
|...++++.+.. |+...+..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.+++..+
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999854 557889999999999999999999999998764 34788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 339 AGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 339 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
.. +-+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.|++..+.+
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 53 2246788999999999999999999999998863 4567789999999999999999999999876543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=6.7e-17 Score=149.13 Aligned_cols=266 Identities=13% Similarity=-0.016 Sum_probs=214.9
Q ss_pred hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507 102 RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH 178 (423)
Q Consensus 102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 178 (423)
.+...|..+...+.+.|++++|++.|++++ .| +..++..+...+...|+++.|...+...++.. +.+...|..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 345567788888899999999999999983 34 55789999999999999999999999888765 456889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRRGFI---------CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-LDKRSYGSMVM 248 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~ 248 (423)
.+...|++++|...++++.+.... .....+..+...+...|++++|...|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999999876321 01223445688899999999999999999987422 16889999999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
.|...|++++|...|+++.+.... +..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999986543 78899999999999999999999999998753 3368899999999999999999
Q ss_pred HHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 329 AYTAFQNMRKAG---LE--------PSDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 329 a~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
|.+.|++..+.. .. .+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999987621 01 1357889999999999999988887664
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.5e-16 Score=145.27 Aligned_cols=264 Identities=12% Similarity=-0.025 Sum_probs=219.1
Q ss_pred hHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507 103 CKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179 (423)
Q Consensus 103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 179 (423)
+...|..+...+.+.|++++|+..|++++ .| +..++..+...+...|+++.|...+...++.. +.+...+..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34567777888889999999999999983 34 45788889999999999999999999888775 4578899999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTV---------------MVVMYSKAGNLKMAEETFEEIKLLGEPL-DKRSY 243 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~ 243 (423)
+...|++++|.+.++++.+.... +...+.. .+..+...|++++|...|+++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999887433 2222221 2444448999999999999999864221 58899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA 323 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 323 (423)
..+...+.+.|++++|...++++.+.... +..++..+...+.+.|++++|...++++.... +.+...+..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999886433 67899999999999999999999999988753 34688999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 324 GQSQKAYTAFQNMRKAGLE----------PSDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
|++++|.+.|++..+.... ....+|..+..++...|+.++|..++++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999998763211 1268899999999999999999988764
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=5.9e-16 Score=140.08 Aligned_cols=262 Identities=10% Similarity=-0.020 Sum_probs=215.6
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507 105 AFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG 181 (423)
Q Consensus 105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 181 (423)
..|-.+...+...|++++|++.|++.. .| +..++..+...+...|+++.|...+....+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 345556667778899999999999973 34 45778888889999999999999999888764 457888999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVM--------------VV-MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 246 (423)
..|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 999999999999999887432 23333333 22 3677889999999999999875 4478899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+..+|...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999886543 67899999999999999999999999988753 34688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 327 QKAYTAFQNMRKAGLEP-----------SDKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
++|.+.+++..+..... +...+..+..++...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999988732111 3678999999999999999999988754
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=9.2e-15 Score=130.26 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=210.6
Q ss_pred CCCCHHHHHHHHHHhcC--CCh--hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507 116 ETGNLSDLLAAWVRFMK--PRR--ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~~~--p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
..|++..|++.+++... |+. .....+.+++...|+.+.+...++. .-+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 46899999999887633 443 3445567889999999888754432 345677888899999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507 192 TLLAMKRRGFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 192 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 270 (423)
.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999998877545 566677778999999999999999987 4678899999999999999999999999998865
Q ss_pred CCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507 271 VYVGSEV---YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKC 347 (423)
Q Consensus 271 ~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 347 (423)
|+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|.+.+++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44321 1233455556799999999999998863 5688899999999999999999999999988743 235788
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 348 VALILSACEKENQLNR-ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 348 ~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
+..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 9999999999999875 67899988874 454332 334455666666665544
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=3.4e-15 Score=133.06 Aligned_cols=252 Identities=11% Similarity=-0.003 Sum_probs=201.2
Q ss_pred HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 143 KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK 222 (423)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 222 (423)
+..-..|+++.+....+................+.++|...|+++.|...++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34445788888877765543332222234556678999999999999986654 2 3557788899999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507 223 MAEETFEEIKLLGEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (423)
+|.+.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..+...+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999876545 566777788999999999999999987 457889999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507 302 QFAGITPDARMC---ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 302 ~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (423)
.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 886 3553221 223344455699999999999999863 4578899999999999999999999999988853 45
Q ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHhcc
Q 014507 379 GKEASCTLAAWFKRLGVVEE-VEHVLREYGL 408 (423)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 408 (423)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78889999999999999976 5788887654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=7.5e-17 Score=147.77 Aligned_cols=252 Identities=11% Similarity=0.064 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507 116 ETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA 195 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (423)
+.|++++|.+++++...| .+|..+..++.+.|++++|...+.. .+|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 668899999999999555 4999999999999999999888753 36888999999999999999999998877
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS 275 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 275 (423)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 7664 4467889999999999999999998885 377789999999999999999999999977
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHH
Confidence 37999999999999999999999988 27899999999999999999996655442 23334455789999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.+.|++++|..+++...... +-...+|+-|..+|++- +.++..+.++..
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~ 266 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELF 266 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 99999999999999987654 45677888887777764 344444444433
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.1e-14 Score=125.05 Aligned_cols=222 Identities=14% Similarity=0.013 Sum_probs=112.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLD----KRSYGS 245 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 245 (423)
.|..+...+...|++++|...|++..+.. .+...|..+...+...|++++|...+++..+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555544 3455555555555555555555555555544210 111 344555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 5555555555555555555555432 221 22333455555555555555431 1133445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
+++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555555432 2234555555555555555555555555555432 22345555555555555555555555554
Q ss_pred hc
Q 014507 406 YG 407 (423)
Q Consensus 406 m~ 407 (423)
..
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=4e-13 Score=129.03 Aligned_cols=335 Identities=12% Similarity=0.014 Sum_probs=268.6
Q ss_pred hcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-----HHHHHHhcCChhhhh-hhHHHHHHHHhccCC----C
Q 014507 48 SLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-----EQKQAISQFPRKMTK-RCKAFVKQIICVSPE----T 117 (423)
Q Consensus 48 ~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-----~~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~ 117 (423)
.+++++|+.+ |++..+.|.. ..+..+...|.. .+.+.|..+|++..+ .+...+..|-..|.. .
T Consensus 56 ~~~~~~A~~~--~~~a~~~~~~-----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDW--FRRAAEQGYT-----PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHH--HHHHHHTTCH-----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHH--HHHHHHCCCH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6788888888 8877665431 233444444443 344777777777655 355666666666665 7
Q ss_pred CCHHHHHHHHHHhcCC-ChhhHHHHHHHHHh----cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc----cCCHHH
Q 014507 118 GNLSDLLAAWVRFMKP-RRADWLAVLKQLKL----MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK----KMQIQN 188 (423)
Q Consensus 118 g~~~~a~~~~~~~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 188 (423)
+++++|++.|++...+ +..++..+...+.. .++.+.|...++...+.| +...+..+...|.. .++.++
T Consensus 129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 8999999999987443 45667777777776 778999999988887764 67888888888887 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 014507 189 AENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGE 260 (423)
Q Consensus 189 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~ 260 (423)
|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 999999998876 66788888888886 889999999999998764 56777778888888 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 014507 261 VLLREMDAQEVYVGSEVYKALLRGYSMN-----GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG---QSQKAYTA 332 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~ 332 (423)
..|++..+.| +...+..+...|... ++.++|...|++..+.| +...+..+...|...| ++++|.++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 9999998875 456778888888887 89999999999998864 5677888888888766 78999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507 333 FQNMRKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR----LGVVEEVEHVLR 404 (423)
Q Consensus 333 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 404 (423)
|++..+.| +...+..+...|.. .+++++|...+++..+.| +...+..|...|.+ .++.++|.+.|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998864 56788888888888 899999999999999875 56788889999998 899999999999
Q ss_pred HhcccC
Q 014507 405 EYGLRE 410 (423)
Q Consensus 405 ~m~~~~ 410 (423)
+..+.+
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 877654
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3.5e-14 Score=120.84 Aligned_cols=210 Identities=13% Similarity=-0.003 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV 247 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 247 (423)
++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34444555555555555555555555555544322 44455555555555555555555555555442 22344444444
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
.++...+.. . .. .+...|++++|...+++..+.. +-+...|..+..++...|+++
T Consensus 81 ~~~~~~~~~-------------~--~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALYRQ-------------A--ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHT-------------C--SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhh-------------h--hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 444444000 0 00 0001166666666666665532 224556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+|.+.|++..+.. .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.|++..
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6666666666644 455666666666666666666666666666532 2345566666666666677777766666543
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.8e-14 Score=121.46 Aligned_cols=167 Identities=13% Similarity=0.005 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
+++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345566667777777777777777777777765443 56677777777777777777777777776642 2356677777
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507 317 INAYQMA-----------GQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC 384 (423)
Q Consensus 317 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (423)
..++... |++++|...+++..+. .| +...+..+...+...|++++|...+++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 7777777 9999999999999884 45 47888999999999999999999999999876 7889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 385 TLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+..+|...|++++|...|++..+.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987653
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-13 Score=119.58 Aligned_cols=225 Identities=12% Similarity=-0.042 Sum_probs=181.4
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 014507 136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CD----QVTLT 209 (423)
Q Consensus 136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~----~~~~~ 209 (423)
..+..+...+...|+++.|...+...++.. .+...+..+..++...|++++|...+++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777888888888777777766 77888888899999999999999999988765322 12 57888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
.+...+...|++++|...|++..+. .|+. ..+...|++++|...++++.+.... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 8899999999999999999998885 3453 3456678889999999998886433 5667888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
++++|...+++..... +.+...|..+..+|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988753 3467888999999999999999999999988753 3357788889999999999999999999
Q ss_pred HHHHC
Q 014507 370 DLERD 374 (423)
Q Consensus 370 ~m~~~ 374 (423)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 34
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.3e-12 Score=115.25 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYG 244 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 244 (423)
+...+..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455556666666666666666666666532 44556666666666 666666666666666654 555666
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 245 SMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 245 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666654 45566666666666 666666666666666543 45555566
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 317 INAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 317 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
...|.. .+++++|.+.|++..+.+ +...+..+...+.. .+++++|...+++..+.+. ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 666665 666666666666666543 34555566666666 6666666666666665432 445555666
Q ss_pred HHHH----cCCHHHHHHHHHHhcc
Q 014507 389 WFKR----LGVVEEVEHVLREYGL 408 (423)
Q Consensus 389 ~~~~----~g~~~~A~~~~~~m~~ 408 (423)
.|.+ .|++++|.+.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 6666 6666666666665443
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=3.3e-13 Score=117.34 Aligned_cols=201 Identities=12% Similarity=0.093 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|.+.|+++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45667777777788888888888888776632 256777777888888888888888888877654 3366777777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
+...|++++|...++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888777633333 45566777777778888888888887776643 2356777777777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888887776642 335666777777777778888888877777664
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=7e-12 Score=120.37 Aligned_cols=302 Identities=10% Similarity=0.003 Sum_probs=247.9
Q ss_pred HHHHHhcCChhhhh-hhHHHHHHHHhccCC----CCCHHHHHHHHHHhcC-CChhhHHHHHHHHHh----cCCchHHHHH
Q 014507 88 QKQAISQFPRKMTK-RCKAFVKQIICVSPE----TGNLSDLLAAWVRFMK-PRRADWLAVLKQLKL----MEHPLYLQVA 157 (423)
Q Consensus 88 ~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~ 157 (423)
+.+.|..+|++..+ .+...+..+-..|.. .+++++|++.|.+... -+...+..+-..+.. .++.+.|...
T Consensus 58 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44666666666544 455666667666666 8999999999999744 355677777778877 7899999999
Q ss_pred HHHHhhcccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507 158 ELALLEESFEANIRDYTKIIHGYGK----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFE 229 (423)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 229 (423)
++...+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.++|+
T Consensus 138 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 138 FRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 98887765 56778888888877 789999999999998875 77888889999988 899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Q 014507 230 EIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAI 301 (423)
Q Consensus 230 ~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 301 (423)
+..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|+..
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 998865 67788888888886 789999999999998875 45677777778887 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 014507 302 QFAGITPDARMCALLINAYQMA-----GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN---QLNRALEFLIDLER 373 (423)
Q Consensus 302 ~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~ 373 (423)
.+.| +...+..+...|... +++++|.++|++..+.| +...+..+...+...| ++++|.+++++..+
T Consensus 286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 8754 667778888888887 89999999999998865 4567777888887766 78899999999988
Q ss_pred CCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHhcccC
Q 014507 374 DGFMVGKEASCTLAAWFKR----LGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 374 ~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 410 (423)
.| +...+..|...|.. .+++++|.+.|++..+.+
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 64 57788889999998 899999999999876653
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=6.5e-13 Score=112.99 Aligned_cols=202 Identities=12% Similarity=-0.002 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 455677777778888888888888888777633 256777778888888888888888888877754 346677777777
Q ss_pred HHHHc-CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 249 AYVRA-GMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS 326 (423)
Q Consensus 249 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 326 (423)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888777322333 4567777777788888888888887776642 23567777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888887776643113556666666677777777777777777765
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3.2e-13 Score=117.39 Aligned_cols=201 Identities=9% Similarity=-0.024 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG 284 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 284 (423)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5678888999999999999999999998875 457889999999999999999999999999886543 77899999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 285 YSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
|...|++++|.+.++++...+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733345 56788889999999999999999999998753 3357889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
|...++++.+. .+.+...+..+...+.+.|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999875 3456788899999999999999999999998654
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=9.3e-13 Score=112.02 Aligned_cols=203 Identities=10% Similarity=-0.028 Sum_probs=175.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 56678889999999999999999999998865 456889999999999999999999999999886543 6788999999
Q ss_pred HHHhC-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 284 GYSMN-GNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 284 ~~~~~-g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 361 (423)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998733334 36788899999999999999999999998743 23578899999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999987532256777888888899999999999999988643
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3.9e-13 Score=118.19 Aligned_cols=232 Identities=11% Similarity=-0.000 Sum_probs=129.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL--DKRSYGSMVMAY 250 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~ 250 (423)
+......+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.+..+ ...+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455556666666666666666655322 33455566666666666666666666666532111 123356666666
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY 330 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 330 (423)
...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654332 44566666666666666666666666665441 224455555552333344666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC-CCCcC------HHHHHHHHHHHHHcCCHHHHH
Q 014507 331 TAFQNMRKAGLEPSDKCVALILSACEKENQ---LNRALEFLIDLERD-GFMVG------KEASCTLAAWFKRLGVVEEVE 400 (423)
Q Consensus 331 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-g~~~~------~~~~~~l~~~~~~~g~~~~A~ 400 (423)
+.|++..+.. +.+...+..+...+...|+ +++|...+++..+. .-.|+ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666532 1224555555555655555 55566666655543 11122 245555666666666666666
Q ss_pred HHHHHhcc
Q 014507 401 HVLREYGL 408 (423)
Q Consensus 401 ~~~~~m~~ 408 (423)
+.|++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666543
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.8e-13 Score=118.19 Aligned_cols=202 Identities=10% Similarity=0.003 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV 247 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 247 (423)
.+...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45566777788888889999999999888876433 67788888888889999999999998888764 44677888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
..+...|++++|...++++.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 8888899999999999888876533 67788888888888999999999988887653 346778888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
+|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999988887743 335778888888888889999999998888774
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=8.7e-12 Score=109.84 Aligned_cols=223 Identities=9% Similarity=-0.038 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK----KMQIQNAENTLLAMKRRGFICDQVTLTV 210 (423)
Q Consensus 135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 210 (423)
..++..+...+...++.+.|...+....+ +-+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 34556666667777777777777776666 2345677778888888 899999999999988876 6788888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 211 MVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 211 li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 8888888 899999999999988865 77888888888888 899999999999988876 566777888
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 283 RGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSA 354 (423)
Q Consensus 283 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 354 (423)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 88887 899999999999888754 56778888888888 899999999999988764 25677778888
Q ss_pred HHH----cCCHHHHHHHHHHHHHCC
Q 014507 355 CEK----ENQLNRALEFLIDLERDG 375 (423)
Q Consensus 355 ~~~----~g~~~~a~~~~~~m~~~g 375 (423)
+.. .+++++|.+.+++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888 889999999999888765
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.5e-13 Score=117.24 Aligned_cols=201 Identities=14% Similarity=0.053 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
....|..+...+...|++++|..+|++..+.. +.+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45677888889999999999999999998864 457889999999999999999999999999886543 7889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 4478889999999999999999999999998753 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
|...++++.+.. +.+..++..+...|.+.|++++|.+.+++..+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999998763 356888999999999999999999999988654
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=8.4e-14 Score=122.62 Aligned_cols=224 Identities=11% Similarity=-0.034 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|...|++..+.... +..+|..+...|...|++++|...|++..+.. +.+..++..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 345556666666677777777777766665332 56666667777777777777777777766653 2345666667777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 329 (423)
+.+.|++++|...++++.+.. |+.......+..+...|++++|...++...... +++...+. ++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHH
Confidence 777777777777777766643 232333334444455577777777776655432 23333333 55556666667777
Q ss_pred HHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 330 YTAFQNMRKAGLE--P-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 330 ~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
.+.+++..+.... | +...+..+...+...|++++|...+++..+.. |+. +.....++...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7777766542211 1 14566777777777777777777777777642 321 222344566667777776665
No 45
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3.2e-12 Score=124.04 Aligned_cols=182 Identities=7% Similarity=-0.034 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507 223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVR-------AGMLD-------RGEVLLREMDAQEVYVGSEVYKALLRGYSMN 288 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 288 (423)
+|..+|++..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4555565555542 3356666666666654 57766 7788887777632223567777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA-CEKENQLNRAL 365 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 365 (423)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 8888888888887764 443 2467777777777888888888888877642 1122333222222 23577888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+|++..+. .+.+...+..++..+.+.|+.++|..+|++....
T Consensus 412 ~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 412 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 888877664 2235677777787777888888888888877654
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=8.7e-13 Score=121.65 Aligned_cols=228 Identities=8% Similarity=-0.006 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
..|+.+...+.+.|++++|+..+++..+.... +...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44556666666777777777777777766433 56677777777777775 777777777777654 3356677777777
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM-AGQSQK 328 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~ 328 (423)
+...|++++|...|+++.+.... +...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777777775544 66677777777777777777777777777653 2366677777777777 555466
Q ss_pred H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC------
Q 014507 329 A-----YTAFQNMRKAGLEP-SDKCVALILSACEKEN--QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG------ 394 (423)
Q Consensus 329 a-----~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------ 394 (423)
| ++.+++..+ +.| +...|..+...+...| ++++|.+.+.++ + ..+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6 466666665 334 3566777666677666 467777777776 2 23345666777777777753
Q ss_pred ---CHHHHHHHHHHh
Q 014507 395 ---VVEEVEHVLREY 406 (423)
Q Consensus 395 ---~~~~A~~~~~~m 406 (423)
..++|.++|+++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 247777777777
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=3.1e-12 Score=112.40 Aligned_cols=246 Identities=10% Similarity=-0.053 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 014507 138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC--DQVTLTVMVVMY 215 (423)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~ 215 (423)
+......+...|+++.|...+...++.. +.+...+..+...+...|++++|...+++..+.+..+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455566666666666666665543 2344577777888888888888888888887743222 234478888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 295 (423)
...|++++|.+.|++..+.. +.+..++..+...|...|++++|...+++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999988888888764 345678888888888999999999988888876332 5667777773444455899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 014507 296 RVFEAIQFAGITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAG-LEPS------DKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~a~ 365 (423)
+.|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998888753 2356777778888888888 778888888876521 1233 256777888888899999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHH
Q 014507 366 EFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
+.+++..+.. +-+......+..
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHC-
T ss_pred HHHHHHHhcC-ccHHHHHHHhhh
Confidence 9999888752 234444444433
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=5.3e-13 Score=117.47 Aligned_cols=225 Identities=12% Similarity=0.035 Sum_probs=183.1
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFI---CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 256 (423)
....|++++|...++++.+.... .+..+|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999886421 246778899999999999999999999999875 44789999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
++|...|++..+.... +..++..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999986543 6789999999999999999999999999875 455445555556667789999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM--V-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
.... +++...+ .++..+...++.++|...+++..+.... | +...+..+...|.+.|++++|.+.|++..+.+
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7643 3343344 4677777888889999999988764211 1 25788899999999999999999999987653
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=4e-12 Score=129.86 Aligned_cols=307 Identities=9% Similarity=0.063 Sum_probs=190.5
Q ss_pred hhhcCchhhHhhhhhcccccccccCCC---cceeeeeeccccchHHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDT---SMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSD 122 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~---~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~ 122 (423)
...|.+.+|+.+ +++.+- .|+. ....-+.++.+-.+.+.........+... .....+...+...|.+++
T Consensus 996 ~~aglp~EaieL--LEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~---~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 996 MTADLPNELIEL--LEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDN---YDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HhCCCHHHHHHH--HHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhh---ccHHHHHHHHHhCCCHHH
Confidence 788899999888 887662 2331 11222333332223222222222222222 223445667778899999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 014507 123 LLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI 202 (423)
Q Consensus 123 a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 202 (423)
|..+|++...++. ..+.++. ..+++++|..+.... -+..+|..+..++.+.|++++|...|.+.
T Consensus 1068 Af~IYkKa~~~~~-A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1068 AFAIFRKFDVNTS-AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHHHHcCCHHH-HHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 9999988642221 1222222 566677776665533 34667778888888888888888888553
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
-|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+. + .++...|..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 267777788888888888888888887766643 33333445777788877777544332 1 23555666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLN 362 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 362 (423)
..|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|..+-.+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 7778888888888888774 36777777777778888777777755 23456666666666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 363 RALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 363 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
.|...... +..++..+..++..|.+.|.+++|..+++.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554432 334455555666666666666666666654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=8.3e-12 Score=115.09 Aligned_cols=246 Identities=12% Similarity=-0.003 Sum_probs=173.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 137 DWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ-IQNAENTLLAMKRRGFICDQVTLTVMVVMY 215 (423)
Q Consensus 137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 215 (423)
.|..+...+...|+.++|...+...++.. +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+...+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 44555555556666666666666666544 3456777777788888886 88888888888877544 677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM-NGNSEGA 294 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a 294 (423)
...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 88888888888888888765 446778888888888888888888888888886654 67788888888888 5554666
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 014507 295 -----QRVFEAIQFAGITPDARMCALLINAYQMAG--QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN-------- 359 (423)
Q Consensus 295 -----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------- 359 (423)
++.+++..... +-+...|+.+...+...| ++++|.+.+.++ +. -..+...+..+...+.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 47777766642 236677888888888777 578888888877 32 2334667777887877764
Q ss_pred -CHHHHHHHHHHH-HHCCCCcC-HHHHHHHHHHHH
Q 014507 360 -QLNRALEFLIDL-ERDGFMVG-KEASCTLAAWFK 391 (423)
Q Consensus 360 -~~~~a~~~~~~m-~~~g~~~~-~~~~~~l~~~~~ 391 (423)
.+++|.++++++ .+ +.|. ...|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 257888888887 44 3343 445555555443
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.7e-12 Score=123.79 Aligned_cols=330 Identities=15% Similarity=-0.022 Sum_probs=183.5
Q ss_pred eeeeeeccccc-hHHHHHHhcCChhhhh------------hhHHHHHHHHhccCCCCCHHHHHHHHHHhc----------
Q 014507 75 FTWIQIGPNIT-EEQKQAISQFPRKMTK------------RCKAFVKQIICVSPETGNLSDLLAAWVRFM---------- 131 (423)
Q Consensus 75 ~~~~~l~~~~~-~~~~~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------- 131 (423)
..||.+...+. .++.+.|...|++..+ ....+|+.+...|...|++++|+..+++..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 44555555544 2444566555554321 123567777777777777777777776641
Q ss_pred CCC-hhhHHHHHHHHHhc--CCchHHHHHHHHHhhcccCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCCCH
Q 014507 132 KPR-RADWLAVLKQLKLM--EHPLYLQVAELALLEESFEANIRDYTKIIHG---YGKKMQIQNAENTLLAMKRRGFICDQ 205 (423)
Q Consensus 132 ~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 205 (423)
.++ ..++.....++... ++.+.|...++..++..+ -++..+..+..+ +...++.++|++.+++..+.... +.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-ch
Confidence 111 23454444444443 356677777776665432 234444444433 33456666777777776665332 45
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507 206 VTLTVMVVMYSKA----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL 281 (423)
Q Consensus 206 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 281 (423)
..+..+...+... |++++|.+++++..... +.+..++..+...|...|++++|...+++..+.... +..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 5555555444443 45667777777776654 345667777777777777777777777777765433 45555555
Q ss_pred HHHHHhC-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 282 LRGYSMN-------------------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 282 i~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
...|... +..+.|...++...... +.+..++..+...|...|++++|.+.|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 5444321 22455666666655432 224455666777777777777777777777664322
Q ss_pred CCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCC-----------------------CCcCHHHHHHHHHHHHHcCCH
Q 014507 343 PSDK--CVALILS-ACEKENQLNRALEFLIDLERDG-----------------------FMVGKEASCTLAAWFKRLGVV 396 (423)
Q Consensus 343 p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g-----------------------~~~~~~~~~~l~~~~~~~g~~ 396 (423)
|... .+..+.. .....|+.++|+..+++..+.. -+.+..+|..+...|...|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 2211 1222221 2235677777777776655431 134577899999999999999
Q ss_pred HHHHHHHHHhccc
Q 014507 397 EEVEHVLREYGLR 409 (423)
Q Consensus 397 ~~A~~~~~~m~~~ 409 (423)
++|.+.|++-.+.
T Consensus 447 ~~A~~~y~kALe~ 459 (472)
T 4g1t_A 447 QQADEDSERGLES 459 (472)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987664
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=3.2e-11 Score=114.99 Aligned_cols=300 Identities=9% Similarity=-0.026 Sum_probs=217.4
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhc-----------CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcc------
Q 014507 104 KAFVKQIICVSPETGNLSDLLAAWVRFM-----------KPR-RADWLAVLKQLKLMEHPLYLQVAELALLEES------ 165 (423)
Q Consensus 104 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 165 (423)
...||.+-..+...|++++|++.|++.. .|+ ..+|+.+..++...|+.++|...+....+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3568888889999999999999998751 233 3678999999999999999988887765421
Q ss_pred -cCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507 166 -FEANIRDYTKIIHGYGKK--MQIQNAENTLLAMKRRGFICDQVTLTVMVVM---YSKAGNLKMAEETFEEIKLLGEPLD 239 (423)
Q Consensus 166 -~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~ 239 (423)
......++.....++.+. +++++|...|++..+..+. +...+..+... +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 112346666666565554 5799999999999887433 55556555544 445678889999999888764 446
Q ss_pred HHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507 240 KRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCAL 315 (423)
Q Consensus 240 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 315 (423)
..++..+...+.. .+++++|.+.+++..+.... +..++..+...|.+.|++++|...+++..+.. +-+...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 6777766666655 45788999999998876544 77889999999999999999999999988753 235667777
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 316 LINAYQMA-------------------GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF 376 (423)
Q Consensus 316 li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 376 (423)
+..+|... +.+++|...++...+.. +.+..++..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 76665432 23567777887777643 22355678889999999999999999999988644
Q ss_pred CcCH--HHHHHHHH-HHHHcCCHHHHHHHHHHhcc
Q 014507 377 MVGK--EASCTLAA-WFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 377 ~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~ 408 (423)
.+.. ..+..+.. .+...|++++|.+.|++..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3322 12333332 23468999999999987543
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.5e-11 Score=119.31 Aligned_cols=217 Identities=10% Similarity=-0.015 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSK-------AGNLK-------MAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
+.|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36778888887763 3377888888888876 79987 899999998863234468889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN-AYQMAGQSQKAY 330 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~ 330 (423)
.|++++|..+|+++.+.... + ...|..++..+.+.|+.++|.++|+...+.. +.+...|..... .+...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999999985322 3 3589999999999999999999999998752 122333332222 234689999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 331 TAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDG-FMV--GKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 331 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
.+|+...+. .| +...|..++..+.+.|+.++|..+|++....+ ..| ....|...+....+.|+.+.+.++++++
T Consensus 412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998874 35 57889999999999999999999999999863 233 2557888888888999999999999877
Q ss_pred cc
Q 014507 407 GL 408 (423)
Q Consensus 407 ~~ 408 (423)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=9e-13 Score=123.33 Aligned_cols=235 Identities=14% Similarity=0.031 Sum_probs=129.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRR----GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----G-EPLDKR 241 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~ 241 (423)
.|..+...+...|++++|...+++..+. +. ......+..+...|...|++++|...|++..+. + ......
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 4555556666666666666666655432 11 112344555666666666666666666655442 1 011233
Q ss_pred HHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507 242 SYGSMVMAYVRAGM-----------------LDRGEVLLREMDAQ----EV-YVGSEVYKALLRGYSMNGNSEGAQRVFE 299 (423)
Q Consensus 242 ~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (423)
++..+...|...|+ +++|...+++..+. +. .....++..+...|...|++++|.+.++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 55566666666666 66666666554331 11 1122355666666677777777777766
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 300 AIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLE-PSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 300 ~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
+..+... .++ ...+..+...|...|++++|.+.+++..+. +.. ....++..+...+...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6543210 011 225666666777777777777777665541 100 113456666666777777777777777
Q ss_pred HHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 370 DLERD----GF-MVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 370 ~m~~~----g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+..+. +. .....++..+...|.+.|++++|.+.|++.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66542 11 111345666677777777777777777653
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=1.6e-11 Score=101.19 Aligned_cols=166 Identities=16% Similarity=0.067 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
++.+|..+...+.+.|++++|++.|++..+..+. +...|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3445555555555555555555555555554322 45555555555555555555555555555443 224444555555
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
.+...++++.+...+.+..+.... +...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555543322 34455555555555555555555555554432 2244455555555555555555
Q ss_pred HHHHHHHHHH
Q 014507 329 AYTAFQNMRK 338 (423)
Q Consensus 329 a~~~~~~m~~ 338 (423)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.1e-12 Score=119.18 Aligned_cols=267 Identities=13% Similarity=0.036 Sum_probs=126.7
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHh--cCCCh-----hhHHHHHHHHHhcCCchHHHHHHHHHhhcc----c-CCCHHHHH
Q 014507 107 VKQIICVSPETGNLSDLLAAWVRF--MKPRR-----ADWLAVLKQLKLMEHPLYLQVAELALLEES----F-EANIRDYT 174 (423)
Q Consensus 107 ~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~ 174 (423)
+......+...|++++|+..|++. ..|+. ..+..+...+...|+++.|...+...+... . +.....+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344444555566666666666654 22321 344455555555666666655555443221 1 11133455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFI-CD----QVTLTVMVVMYSKAGN--------------------LKMAEETFE 229 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 229 (423)
.+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 5555555566666666555555432000 01 2245555555555555 555555555
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507 230 EIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YVG----SEVYKALLRGYSMNGNSEGAQRVFE 299 (423)
Q Consensus 230 ~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~ 299 (423)
+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54331 1001 123455555555555555555555555443210 001 2245555555555555555555555
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 300 AIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS-DKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 300 ~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
+...... .++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5443210 011 334455555555555555555555554431 10111 3344455555555555555555555
Q ss_pred HHHH
Q 014507 370 DLER 373 (423)
Q Consensus 370 ~m~~ 373 (423)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2e-12 Score=120.40 Aligned_cols=272 Identities=13% Similarity=-0.002 Sum_probs=187.0
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-C
Q 014507 134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEAN----IRDYTKIIHGYGKKMQIQNAENTLLAMKRR----GFIC-D 204 (423)
Q Consensus 134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 204 (423)
....+......+...|+++.|...+...++.... + ...+..+...+...|++++|...+++..+. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445556666777888888888888877776422 3 356777888888888888888888876443 2121 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGM--------------------LDRG 259 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~a 259 (423)
..++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888888888888887765310 012 3467778888888888 8888
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHH
Q 014507 260 EVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPD----ARMCALLINAYQMAGQSQKA 329 (423)
Q Consensus 260 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a 329 (423)
...+++..+. +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776542 2111 234677778888888888888888887654210 122 33677788888888888888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcCCHHHH
Q 014507 330 YTAFQNMRKA----GLEPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMV-GKEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 330 ~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A 399 (423)
...+++..+. +..+. ..++..+...+...|++++|...+++..+. +..+ ...++..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888877642 11111 456777888888888888888888877653 1111 155677788888888888888
Q ss_pred HHHHHHh
Q 014507 400 EHVLREY 406 (423)
Q Consensus 400 ~~~~~~m 406 (423)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.47 E-value=1.4e-10 Score=118.71 Aligned_cols=310 Identities=11% Similarity=0.023 Sum_probs=217.9
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLA 125 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~ 125 (423)
...|++++|..+ |++-. . .+ ...+.++. .-+.++.|.++.++.. +..+|..+..++.+.|++++|++
T Consensus 1060 i~lglyEEAf~I--YkKa~---~-~~---~A~~VLie--~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1060 ISNELFEEAFAI--FRKFD---V-NT---SAVQVLIE--HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HhCCCHHHHHHH--HHHcC---C-HH---HHHHHHHH--HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 566777888777 66531 1 10 11122222 1234566665555443 34678888888888899999998
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 014507 126 AWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ 205 (423)
Q Consensus 126 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 205 (423)
.|.+. -|...|..+..++.+.|+++++.+++....+.. ++....+.++.+|++.+++++..... + .++.
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 88774 556677888888888999988888887666554 33333334888888888888544432 2 2366
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY 285 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 285 (423)
..|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. -+..+|..+-.+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 67777888888899999999988874 37888888899999999988888876 2457888888888
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 286 SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 365 (423)
...|++..|......+ .-+...+..++..|.+.|.+++|..+++...... +-....|.-+...+++. ++++..
T Consensus 1261 ve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklm 1333 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMR 1333 (1630)
T ss_pred hhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHH
Confidence 8888888888776643 3466777899999999999999999997776432 22345666666666663 344444
Q ss_pred HHHHHHHHC-CCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507 366 EFLIDLERD-GFMV------GKEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 366 ~~~~~m~~~-g~~~------~~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
+.++...+. .+++ +...|..++-.|.+.|+++.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 444433333 3433 56779999999999999999983
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.5e-12 Score=116.14 Aligned_cols=268 Identities=13% Similarity=-0.005 Sum_probs=188.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhcccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 014507 140 AVLKQLKLMEHPLYLQVAELALLEESFEAN----IRDYTKIIHGYGKKMQIQNAENTLLAMKRR----GFIC-DQVTLTV 210 (423)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ 210 (423)
.....+...|+++.|...++..++.... + ...+..+...+...|++++|.+.+++..+. +..| ...++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344555667777776666666655322 2 356777788888888888888888876443 2111 2456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHHHHHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGM--------------------LDRGEVLLRE 265 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~ 265 (423)
+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 88888888899988888888765310 112 3467778888888888 8888888877
Q ss_pred HHhC----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 266 MDAQ----EVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 266 m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
..+. +.. ....++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 111 12347788888899999999999999877642 1111 234788888899999999999999988
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 336 MRKA----GLEP-SDKCVALILSACEKENQLNRALEFLIDLERD----GFM-VGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 336 m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
..+. +..+ ...++..+...+...|++++|...+++..+. +-. ....++..+...|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7652 1111 1457788888899999999999999987653 111 1245678899999999999999999988
Q ss_pred hcc
Q 014507 406 YGL 408 (423)
Q Consensus 406 m~~ 408 (423)
..+
T Consensus 329 a~~ 331 (338)
T 3ro2_A 329 HLE 331 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=8.5e-13 Score=118.25 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=166.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-------GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------ 234 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 234 (423)
.+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888888999999999999999988763 22334567888889999999999999999888764
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--
Q 014507 235 GE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EV-YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA-- 304 (423)
Q Consensus 235 g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 304 (423)
+- +....++..+...|...|++++|...+++..+. +. ......+..+...+...|++++|.+.+++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 223467888889999999999999999988764 22 224567888889999999999999999987753
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHHcCCHHHHH
Q 014507 305 ----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA-------GLEPSD-------KCVALILSACEKENQLNRAL 365 (423)
Q Consensus 305 ----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~li~~~~~~g~~~~a~ 365 (423)
+..| ...++..+..+|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 3457888899999999999999999988752 112221 12222233333445555666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
..++..... .+.+..++..+..+|.+.|++++|.++|++..+
T Consensus 265 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665543 234567788999999999999999999987643
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=5.6e-12 Score=120.28 Aligned_cols=211 Identities=12% Similarity=0.024 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL-KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR 264 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 264 (423)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +-+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443331 22455555566666666666 66666666655543 2245556666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 014507 265 EMDAQEVYVGSEVYKALLRGYSMN---------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA--------GQSQ 327 (423)
Q Consensus 265 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 327 (423)
+..+.. |+...+..+...+... |++++|.+.+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 665543 4445556666666666 66666666666665542 22455666666666666 6666
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 328 KAYTAFQNMRKAGLEP----SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
+|.+.|++..+. .| +...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666653 23 45566666666666666666666666665532 224455666666666666666666544
Q ss_pred H
Q 014507 404 R 404 (423)
Q Consensus 404 ~ 404 (423)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1.2e-10 Score=104.59 Aligned_cols=217 Identities=11% Similarity=0.005 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 153 YLQVAELALLEESFEANIRDYTKIIHGYGK-------KMQI-------QNAENTLLAMKRRGFICDQVTLTVMVVMYSKA 218 (423)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 218 (423)
.|..+++..+... +.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444555544432 3455556555555542 3554 66666666666521112445566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHHHH
Q 014507 219 GNLKMAEETFEEIKLLGEPLD-KR-SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS-MNGNSEGAQ 295 (423)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~ 295 (423)
|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.... +...|........ ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653 232 22 5666666666666666666666666654322 3333333322221 246666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-LEP--SDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.+|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666655431 2245556666666666666666666666666542 333 24455555666666666666666666665
Q ss_pred HC
Q 014507 373 RD 374 (423)
Q Consensus 373 ~~ 374 (423)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=1.5e-11 Score=116.56 Aligned_cols=339 Identities=10% Similarity=0.030 Sum_probs=183.3
Q ss_pred hhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHH---HHHhcCChhhhhhhHHHHHHHHhccCCC---
Q 014507 45 WSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQK---QAISQFPRKMTKRCKAFVKQIICVSPET--- 117 (423)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~---~~a~~~~~~m~~~~~~~~~~ll~~~~~~--- 117 (423)
..++|++++|+.+ |++..+.|. + ..+..+...|. .+.. +.|..+|++..+.+...+..+-..+...
T Consensus 13 ~~~~g~~~~A~~~--~~~aa~~g~-~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQN--YQQLAELGY-S----EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHTC-C----TGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHH--HHHHHHCCC-H----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3788999999999 998877663 2 23344555554 3444 6888888877666666666666633333
Q ss_pred --CCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhcCCchHH---HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507 118 --GNLSDLLAAWVRFMKPR-RADWLAVLKQLKLMEHPLYL---QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 118 --g~~~~a~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
+++++|++.|.+...++ ...+..|...+...+....+ ...+......| +...+..+...|...+.++++..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 38899999999875443 34666677777665543332 33333233233 33455556666666664444333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHHHHHH
Q 014507 192 TLLAMKRRGFICDQVTLTVMVVMYSKAG---NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA----GMLDRGEVLLR 264 (423)
Q Consensus 192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~ 264 (423)
....+.+.-...+...+..+...|...| +.++|++.|++..+.| .++...+..|...|... +++++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3222222211113336666777777777 6777777777777766 44555555566655443 56777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 014507 265 EMDAQEVYVGSEVYKALLRG-Y--SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-----QSQKAYTAFQNM 336 (423)
Q Consensus 265 ~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m 336 (423)
+.. .| +...+..|... + ...++.++|.+.|++..+.| +...+..+...|. .| ++++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 766 22 33455555554 3 45677777777777776654 5556666666665 44 777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHhcc
Q 014507 337 RKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR----LGVVEEVEHVLREYGL 408 (423)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 408 (423)
. .| +...+..|...|.. ..++++|..+|++..+.|. ......|..+|.. ..+.++|..+|+.-.+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 5 22 44555555555554 2367777777777766553 2233445555543 3466666666665544
Q ss_pred c
Q 014507 409 R 409 (423)
Q Consensus 409 ~ 409 (423)
.
T Consensus 387 ~ 387 (452)
T 3e4b_A 387 Q 387 (452)
T ss_dssp T
T ss_pred C
Confidence 3
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=4.1e-11 Score=98.66 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56778888888888888888888888888764 446778888888888888888888888888776544 5667777778
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR 363 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 363 (423)
.+...++++.|...+++..... +.+...+..+..+|.+.|++++|.+.|++..+.. +-+...+..+...+.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888877643 3367778888888888888888888888887743 2356778888888888888888
Q ss_pred HHHHHHHHHHC
Q 014507 364 ALEFLIDLERD 374 (423)
Q Consensus 364 a~~~~~~m~~~ 374 (423)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887763
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=3.6e-12 Score=119.23 Aligned_cols=270 Identities=13% Similarity=-0.001 Sum_probs=208.0
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-----hhHHHHHHHHHhcCCchHHHHHHHHHhhcc-----cCCCHHH
Q 014507 105 AFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-----ADWLAVLKQLKLMEHPLYLQVAELALLEES-----FEANIRD 172 (423)
Q Consensus 105 ~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 172 (423)
..+..+...+...|++++|++.|++. ..|+. ..+..+...+...|+++.|...++..++.. .+.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44556667788899999999999997 34443 467888889999999999988888776531 2334567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRR----GF-ICDQVTLTVMVVMYSKAGN-----------------LKMAEETFEE 230 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 230 (423)
+..+...+...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999987654 11 1134578889999999999 9999999988
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 014507 231 IKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKALLRGYSMNGNSEGAQRVFEA 300 (423)
Q Consensus 231 m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (423)
..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7542 1111 2357888999999999999999999988763211 12 34788899999999999999999988
Q ss_pred HHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 301 IQFAGI-TP----DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 301 m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
...... .. ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 765210 01 2567888999999999999999999988752 1111 145788889999999999999999999
Q ss_pred HHHC
Q 014507 371 LERD 374 (423)
Q Consensus 371 m~~~ 374 (423)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.7e-10 Score=103.50 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=181.6
Q ss_pred HHHHHHHHhccCCC----CCH----HHHHHHHHHhc--CC-ChhhHHHHHHHHH-------hcCCc-------hHHHHHH
Q 014507 104 KAFVKQIICVSPET----GNL----SDLLAAWVRFM--KP-RRADWLAVLKQLK-------LMEHP-------LYLQVAE 158 (423)
Q Consensus 104 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~--~p-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~ 158 (423)
...|...+..-.+. ++. ++|+..|++.+ .| +...|......+. +.|+. ++|..++
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 34566665543332 343 78889999873 34 4467777776665 35886 8888888
Q ss_pred HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 014507 159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKLLGEP 237 (423)
Q Consensus 159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (423)
+..++.-.+-+...|..++..+.+.|++++|.++|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 88877423456778999999999999999999999999986322 333 89999999999999999999999999864 3
Q ss_pred CCHHHHHHHHHHHH-HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 014507 238 LDKRSYGSMVMAYV-RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG-ITP--DARMC 313 (423)
Q Consensus 238 ~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~ 313 (423)
.+...|........ ..|++++|..+|++..+.... +...+..++..+.+.|++++|..+|++..... +.| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 44555554433322 369999999999999876433 67899999999999999999999999999863 354 46789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 314 ALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 314 ~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
..++..+.+.|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999873
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1.7e-11 Score=113.74 Aligned_cols=230 Identities=7% Similarity=-0.080 Sum_probs=175.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHHHHH
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRR----GFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PL-----DKRSYG 244 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~ 244 (423)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999998764 2111 346788899999999999999999999876311 11 235788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GI-TPDARMCA 314 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~ 314 (423)
.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753 2111 1347888999999999999999999988761 32 23467789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCc-CHHHHHHH
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKA----GLEPSDKCVALILSACEKENQ---LNRALEFLIDLERDGFMV-GKEASCTL 386 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~~~~l 386 (423)
.+..+|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999988652 111123345667777888888 66666666654 3333 35567889
Q ss_pred HHHHHHcCCHHHHHHHHHHhcc
Q 014507 387 AAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
...|.+.|++++|.+.|++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987644
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.4e-11 Score=111.30 Aligned_cols=269 Identities=13% Similarity=0.026 Sum_probs=203.8
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHh--cCCC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhhc----c-cCCCHHHH
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRF--MKPR-----RADWLAVLKQLKLMEHPLYLQVAELALLEE----S-FEANIRDY 173 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 173 (423)
.+......+...|++++|++.|++. ..|+ ...+..+...+...|+++.|...+...++. + .+.....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444555677889999999999997 3344 256778888999999999998888776543 1 12235678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRRGF-ICD----QVTLTVMVVMYSKAGN--------------------LKMAEETF 228 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 228 (423)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999998765411 112 3478888999999999 99999999
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507 229 EEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE----V-YVGSEVYKALLRGYSMNGNSEGAQRVF 298 (423)
Q Consensus 229 ~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 298 (423)
++..+. +..+ ...++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887542 1111 23478888899999999999999999886531 1 112347888899999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 299 EAIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 299 ~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
++...... .++ ..++..+...+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 98764210 112 567888899999999999999999988652 1111 1457788899999999999999999
Q ss_pred HHHHHC
Q 014507 369 IDLERD 374 (423)
Q Consensus 369 ~~m~~~ 374 (423)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998874
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=3.6e-11 Score=114.72 Aligned_cols=198 Identities=11% Similarity=-0.025 Sum_probs=168.1
Q ss_pred CCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507 167 EANIRDYTKIIHGYGKKMQI-QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS 245 (423)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 245 (423)
+.+...+..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|...|++..+. .|+...+..
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 45778888899999999999 9999999999887433 6889999999999999999999999999886 467788889
Q ss_pred HHHHHHHc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCC-
Q 014507 246 MVMAYVRA---------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN--------GNSEGAQRVFEAIQFAGIT- 307 (423)
Q Consensus 246 li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~- 307 (423)
+...+... |++++|...|++..+.... +...|..+..+|... |++++|.+.|++..+.. +
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 253 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK 253 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence 99999998 9999999999999886544 678899999999888 99999999999988752 2
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 308 --PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLID 370 (423)
Q Consensus 308 --p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 370 (423)
-+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+.+
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 378899999999999999999999999988743 22466788888888888888888875543
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=6.3e-11 Score=112.31 Aligned_cols=306 Identities=11% Similarity=0.021 Sum_probs=203.5
Q ss_pred hHHHHHHhcCChhhhh-hhHHHHHHHHhccCCCCCH---HHHHHHHHHhcCCChhhHHHHHHHHHhcC-----CchHHHH
Q 014507 86 EEQKQAISQFPRKMTK-RCKAFVKQIICVSPETGNL---SDLLAAWVRFMKPRRADWLAVLKQLKLME-----HPLYLQV 156 (423)
Q Consensus 86 ~~~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~ 156 (423)
+++.+.|..+|++..+ .+...+..+-..|...|+. ++|++.|.+....+...+..+...+...+ +.++|..
T Consensus 16 ~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 4566888888887765 3555666777777778888 89999999986667777777777666655 6678888
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 157 AELALLEESFEANIRDYTKIIHGYGKKMQIQ---NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
.++...+.|... .+..+...|...+..+ ++.+.+......| +...+..+...|...+.++++......+.+
T Consensus 96 ~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 96 LLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 888888766433 6666777777665543 3455555555555 345677788888888855554444333332
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCC
Q 014507 234 LGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN----GNSEGAQRVFEAIQFAGI 306 (423)
Q Consensus 234 ~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~ 306 (423)
.....++..+..|...|...| +.++|...|++..+.|.. +...+..+...|... ++.++|.+.|+... .|
T Consensus 170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g- 246 (452)
T 3e4b_A 170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG- 246 (452)
T ss_dssp HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-
Confidence 222233348888999999999 999999999999998864 666667777777665 79999999999988 43
Q ss_pred CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCc
Q 014507 307 TPDARMCALLINA-Y--QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN-----QLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 307 ~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~ 378 (423)
+...+..+... + ...|++++|.++|++..+.| +...+..+...|. .| ++++|.++|++.. +-
T Consensus 247 --~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g 316 (452)
T 3e4b_A 247 --YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GR 316 (452)
T ss_dssp --STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TT
T ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CC
Confidence 55566666665 3 46899999999999999877 5667777777776 55 9999999999877 34
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHhcccC
Q 014507 379 GKEASCTLAAWFKR----LGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 379 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 410 (423)
+...+..|...|.. ..++++|.+.|++-.+.+
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 66777788888876 349999999999877654
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.8e-10 Score=105.29 Aligned_cols=290 Identities=9% Similarity=-0.062 Sum_probs=198.3
Q ss_pred CCCCCHHHHHHHHHHh------cCCCh--hhHHHHHHHHHh--cCCchHHH---------HHHHHHhhcccCCCH----H
Q 014507 115 PETGNLSDLLAAWVRF------MKPRR--ADWLAVLKQLKL--MEHPLYLQ---------VAELALLEESFEANI----R 171 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~------~~p~~--~~~~~ll~~~~~--~~~~~~a~---------~~~~~~~~~~~~~~~----~ 171 (423)
...+++++|.+++++. .+.|. ..|-.++..-.. .+...... ..+..+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 3567889998888764 22333 333444432211 22222222 444443322111111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGF-IC----DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--E---PL-DK 240 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~ 240 (423)
.|......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+.. . .+ ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 233445567789999999999999876411 12 24578889999999999999999999887531 1 11 24
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQF-----AGITPDA 310 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~ 310 (423)
.+++.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|.+.+++... .. +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 57888999999999999999999987653 2211 245788899999999999999999998876 32 2246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCc-CHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGL---EPS-DKCVALILSACEKENQ---LNRALEFLIDLERDGFMV-GKEA 382 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~ 382 (423)
.++..+..+|.+.|++++|.+.+++..+..- .|. ...+..+...+...++ +.+|...+++ .+..+ ....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 7888899999999999999999999876311 222 3456666666677777 6666666665 33333 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 383 SCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
+..+...|.+.|++++|.+.|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77899999999999999999987643
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2e-10 Score=94.09 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=93.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.|..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 444555566666666666666666555422 245556666666666666666666666665543 334555666666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
..|++++|...++++.+... .+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555432 244555555555666666666666665555432 2244555555555555566666655
Q ss_pred HHHHHHH
Q 014507 332 AFQNMRK 338 (423)
Q Consensus 332 ~~~~m~~ 338 (423)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.2e-12 Score=112.56 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR------GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------G 235 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 235 (423)
....+..+...+...|++++|...+++..+. +- +....++..+...|...|++++|...|++..+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777777777777777776543 11 223456677777777777777777777777653 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---
Q 014507 236 EPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--- 304 (423)
Q Consensus 236 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 304 (423)
..| ...++..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++...
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 2345677777777788888888877777653 1122 2446777777888888888888888776642
Q ss_pred ----CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 305 ----GITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 305 ----g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
...+. ...+..+...+...+.+.++...++...... ..+..++..+...|...|++++|.+.+++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 1222233333444555556666666555421 22356778888888888888888888887765
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.4e-10 Score=93.63 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ 321 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 321 (423)
.|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4555556666666666666666666554322 45566666666666677777777666665542 235566666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 322 MAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 322 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766542 2345666666777777777777777777766642 3356667777777777777777777
Q ss_pred HHHHhcc
Q 014507 402 VLREYGL 408 (423)
Q Consensus 402 ~~~~m~~ 408 (423)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776644
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=9.7e-10 Score=101.29 Aligned_cols=290 Identities=11% Similarity=-0.012 Sum_probs=165.6
Q ss_pred hccCCCCCHHHHHHHHHHhc--CCCh------hhHHHHHHHHHhcCCchHHHHHHHHHhhcccC-CCH----HHHHHHHH
Q 014507 112 CVSPETGNLSDLLAAWVRFM--KPRR------ADWLAVLKQLKLMEHPLYLQVAELALLEESFE-ANI----RDYTKIIH 178 (423)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~--~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~ 178 (423)
..+...|++++|.+.+++.. .|+. .+++.+...+...|+++.|...+......... .+. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34456788888888887752 1221 13444555666677777777766665543211 121 23455666
Q ss_pred HHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 014507 179 GYGKKMQIQNAENTLLAMKRR----GFI--C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL----DKRSYGSMV 247 (423)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li 247 (423)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777776543 221 2 23345556677777777777777777776532111 234566677
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVG--SEVYK----ALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLIN 318 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~ 318 (423)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777777777777777777654311111 11111 22334667777777777777765432111 1234556667
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507 319 AYQMAGQSQKAYTAFQNMRK----AGLEPSD-KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL 393 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 393 (423)
.+...|++++|.+.+++... .|..++. ..+..+..++...|+.++|...+++..... +. .-.+..+...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~ 335 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHFVIE 335 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHc
Confidence 77777777777777776644 2222222 255555666777777777777777776641 10 1122334444
Q ss_pred CCHHHHHHHHHHhccc
Q 014507 394 GVVEEVEHVLREYGLR 409 (423)
Q Consensus 394 g~~~~A~~~~~~m~~~ 409 (423)
| +....+++.+...
T Consensus 336 g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 336 G--EAMAQQLRQLIQL 349 (373)
T ss_dssp H--HHHHHHHHHHHHT
T ss_pred c--HHHHHHHHHHHhC
Confidence 4 5556666655443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=3.8e-10 Score=112.26 Aligned_cols=166 Identities=9% Similarity=-0.033 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
+...|+.+...+.+.|++++|++.|++..+.... +...|..+...|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4577888899999999999999999998887433 67888889999999999999999999888864 335788888999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
+|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999988886544 67788899999999999999999999888752 2267788888999999999998
Q ss_pred HHHHHHHHHH
Q 014507 329 AYTAFQNMRK 338 (423)
Q Consensus 329 a~~~~~~m~~ 338 (423)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=8.1e-11 Score=103.50 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=142.3
Q ss_pred HccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Q 014507 181 GKKMQIQNAENTLLAMKRR-------GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------GEPL-DKRSYGSM 246 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l 246 (423)
...|++++|+..+++..+. ..+....++..+...|...|++++|...|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666665555431 11223556777777888888888888888777653 2112 34567777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 014507 247 VMAYVRAGMLDRGEVLLREMDAQ------E-VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA------GITP-DARM 312 (423)
Q Consensus 247 i~~~~~~~~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~ 312 (423)
...|...|++++|...+++..+. . .+....++..+...|...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888777653 1 1223567788888888888888888888877653 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCc
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKA-------GLEPSD-KCVALILSACEKENQLN------RALEFLIDLERDGFMV 378 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~ 378 (423)
+..+..+|...|++++|.+.+++..+. ...+.. ..+..+.......+... .+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888888999999999999999887652 122322 23333333333322222 22222221111 1123
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 379 GKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
...++..+...|.+.|++++|.++|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999987654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.3e-09 Score=93.06 Aligned_cols=195 Identities=12% Similarity=-0.027 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV 247 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 247 (423)
.|+..+......+...|++++|...|++..+....++...+..+...+...|++++|...|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677788888888999999999999998887654677777778888999999999999999988764 33567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGS-------EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD---ARMCALLI 317 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li 317 (423)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999988875433 34 45777888888999999999999998875 454 45667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
.+|...| ...++++...+ ..+...|..... ...+.+++|...+++..+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 7775544 34455555432 234445544433 3456688999999988874
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=5.7e-10 Score=111.01 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
+...|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999874 346789999999999999999999999999986544 6889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLN 362 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 362 (423)
+|.+.|++++|++.|++..+.. +-+...|+.+..+|...|++++|.+.|++..+. .|+ ...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988753 336889999999999999999999999999884 564 788999999999999999
Q ss_pred HHHHHHHHHHH
Q 014507 363 RALEFLIDLER 373 (423)
Q Consensus 363 ~a~~~~~~m~~ 373 (423)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=4.5e-09 Score=96.78 Aligned_cols=269 Identities=13% Similarity=-0.038 Sum_probs=175.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 014507 139 LAVLKQLKLMEHPLYLQVAELALLEESFEANIR----DYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-CD----QVTLT 209 (423)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 209 (423)
......+...|+++.+...+...+......+.. .++.+...+...|++++|.+.+++..+.... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333445566888888888777766654333322 4566667788888888888888877543110 12 23356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----CCHHHH
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLL----GEP--LD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY----VGSEVY 278 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~ 278 (423)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777788888888888888877652 221 22 345666777888888888888888887653221 123567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGITP-D-ARMCA----LLINAYQMAGQSQKAYTAFQNMRKAGLEP---SDKCVA 349 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~-~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~ 349 (423)
..+...+...|++++|...+++.....-.+ + ..... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 777888888888888888888776421111 1 11111 23344778888888888888776532111 133566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 350 LILSACEKENQLNRALEFLIDLERD----GFMVGK-EASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.+.+++..
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777888888888888888876543 322333 366677788888888888888887653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=3.8e-09 Score=90.07 Aligned_cols=194 Identities=13% Similarity=-0.020 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
|...+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 667888899999999999999999999998764378888888999999999999999999999987544 6778999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDA-------RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS---DKCVALILS 353 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~ 353 (423)
.|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999988753 2244 45788888899999999999999999874 565 456666776
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 354 ACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
.+...| ...++++...+ ..+...|..... ...|.+++|...|++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 765443 44556665543 234555554443 3467789999999887653
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.2e-10 Score=102.36 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR------GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------G 235 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 235 (423)
...++..+...+...|++++|...+++..+. +- +....++..+...|...|++++|...|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777777777888777777776644 11 123456777777777788888887777777653 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---
Q 014507 236 E-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--- 304 (423)
Q Consensus 236 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 304 (423)
. +....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456777777777888888888887777654 1122 3456777777888888888888888776642
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 305 ----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AG-LEP-SDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 305 ----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
...+ ....|..+...+...+....+.. +..... .+ ..| ...++..+...+...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 22233333333333222222221 111111 11 112 245677778888888888888888887765
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1.4e-09 Score=100.65 Aligned_cols=227 Identities=8% Similarity=-0.047 Sum_probs=153.1
Q ss_pred HHHhcCCchHHHHHHHHHhhc----ccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC----CCHHHHHHHH
Q 014507 144 QLKLMEHPLYLQVAELALLEE----SFEA-NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG--FI----CDQVTLTVMV 212 (423)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~----p~~~~~~~li 212 (423)
.+...|+++.|...+....+. +-.+ ...++..+...+...|++++|...+++..+.- .. ....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344556666665555555432 1111 23567777888888888888888888776531 11 1235677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 014507 213 VMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKALL 282 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~li 282 (423)
..|...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+ ...+....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 888888888888888888765310 111 24677888888888999999888888776 32133466788888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFA----GITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPS-DKCVALILSA 354 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 354 (423)
..|.+.|++++|...+++.... +-......+..+...+...|+ +++|+.++++. +..|+ ...+..+...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 8888999999998888876542 111122335667777778888 66666666655 33333 4467778888
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 014507 355 CEKENQLNRALEFLIDLER 373 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~ 373 (423)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8899999999998887764
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=2.6e-08 Score=87.52 Aligned_cols=242 Identities=10% Similarity=-0.021 Sum_probs=164.2
Q ss_pred CCCCHHHHHHHHHHhcCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 014507 116 ETGNLSDLLAAWVRFMKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLL 194 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 194 (423)
-.|++..+++-..+.-.-+. ..-.-+.+++...|+.... ....|....+..+...+ ..+ |...|+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 35777777774443311111 2222344677777776642 12334444444444443 322 777888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV 273 (423)
Q Consensus 195 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 273 (423)
+..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 777665 45666677888999999999999999999877653 236678889999999999999999999999875 34
Q ss_pred -----CHHHHHHHHHH--HHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 014507 274 -----GSEVYKALLRG--YSM--NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA----- 339 (423)
Q Consensus 274 -----~~~~~~~li~~--~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 339 (423)
+..+...|..+ ... .++..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 34555666655 222 34899999999998765 455444445555889999999999999876542
Q ss_pred CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507 340 GL---EP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK 380 (423)
Q Consensus 340 ~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 380 (423)
+. .| |..++..+|......|+ .|.++++++.+. .|+.
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 10 24 46677677777777786 888999999885 4544
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.1e-08 Score=94.58 Aligned_cols=226 Identities=12% Similarity=0.001 Sum_probs=158.9
Q ss_pred HHHhcCCchHHHHHHHHHhhccc-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHH
Q 014507 144 QLKLMEHPLYLQVAELALLEESF-EA----NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR----G-FIC-DQVTLTVMV 212 (423)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~~~~~li 212 (423)
.+...|+.+.|...+....+... .+ ...++..+...+...|+++.|...+++..+. + ..+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556777777766666554311 12 2456777888888899999998888887653 1 111 245677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 014507 213 VMYSKAGNLKMAEETFEEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKALL 282 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~li 282 (423)
..|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+ .... ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 8899999999999998887652 1111 234677888889999999999999988876 4333 367888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAG----ITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPS-DKCVALILSA 354 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~ 354 (423)
..+.+.|++++|...+++..+.. -+.....+..+-..+...|+ +.+|+..+++ .+..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 99999999999999998877631 12223455666666777777 6677776665 233333 3466778888
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 014507 355 CEKENQLNRALEFLIDLER 373 (423)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~ 373 (423)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8999999999999988754
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=1e-08 Score=78.79 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM 287 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 287 (423)
|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3334444444444444444444444432 223344444444444444444444444444433221 33344444444445
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
.|++++|.+.++.+.... +.+...+..+...+...|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555554444331 1234444444455555555555555554444
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=1.3e-08 Score=78.25 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=105.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4667778888889999999999888776433 67778888888888899999999998888765 446778888888888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999888876433 5678888888899999999999999887754
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=7.5e-09 Score=91.96 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHH
Q 014507 185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEPLD-KRSYGSMVMAYVRAGMLDRG 259 (423)
Q Consensus 185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a 259 (423)
++++|...|++. ...|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455667777777776665442 21111 34666677777777777777
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 014507 260 EVLLREMDAQ----EVYV-GSEVYKALLRGYSMN-GNSEGAQRVFEAIQFAGI-TPD----ARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 260 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 328 (423)
...+++..+. |-.. -..+++.+...|... |++++|...|++..+... ..+ ..+++.+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777666542 1110 134666677777775 777777777776654210 001 3456677777777777777
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHH--HcC
Q 014507 329 AYTAFQNMRKAGLEPSD------KCVALILSACEKENQLNRALEFLIDLERDGFMVG------KEASCTLAAWFK--RLG 394 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~l~~~~~--~~g 394 (423)
|.+.|++..+....... ..|..+..++...|++++|...+++..+. .|+ ...+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 77777777663221111 14566666677777777777777776552 222 112344455553 345
Q ss_pred CHHHHHHHHHHhc
Q 014507 395 VVEEVEHVLREYG 407 (423)
Q Consensus 395 ~~~~A~~~~~~m~ 407 (423)
++++|.+.|+++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 6777777776553
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=7.7e-09 Score=91.90 Aligned_cols=197 Identities=9% Similarity=0.002 Sum_probs=141.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHH
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRR----GFICD-QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE---PL--DKRSY 243 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~ 243 (423)
......|...|++++|...|++..+. |-.++ ..+|+.+...|.+.|++++|...|++..+... .+ -..++
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33456778889999999999887653 32222 46788999999999999999999988765310 11 13578
Q ss_pred HHHHHHHHHc-CChhHHHHHHHHHHhCCCC----CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH------H
Q 014507 244 GSMVMAYVRA-GMLDRGEVLLREMDAQEVY----VG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA------R 311 (423)
Q Consensus 244 ~~li~~~~~~-~~~~~a~~~~~~m~~~~~~----p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~ 311 (423)
+.+...|... |++++|...|++..+.... +. ..++..+...+.+.|++++|...|++.......... .
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 8899999996 9999999999988763211 11 357888999999999999999999998875322211 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD------KCVALILSACE--KENQLNRALEFLIDLE 372 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~ 372 (423)
.|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 577788889999999999999999876 33432 13445556654 3456777777776554
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=2.5e-08 Score=83.70 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=57.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ 325 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 325 (423)
+..+|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 444455555555555555555543322 34455555555555555555555555554431 1234445555444443332
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507 326 --SQKAYTAFQNMRKAGLEPSD--KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC 384 (423)
Q Consensus 326 --~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (423)
.+.+...++... .|+. ..+.....++...|++++|...|++..+ ..|+.....
T Consensus 138 ~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 222333333322 2222 1222233334445555555555555554 234444333
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=3.6e-08 Score=85.88 Aligned_cols=210 Identities=12% Similarity=0.023 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD---QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-P-LDKRS 242 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~ 242 (423)
.+...+-.....+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666677777788888888888887776322 2 55677777778888888888888888777521 1 12345
Q ss_pred HHHHHHHHHH--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 243 YGSMVMAYVR--------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314 (423)
Q Consensus 243 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 314 (423)
+..+..++.. .|++++|...|++..+.... +......+ ..+...... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 6666777777 77777777777777764322 11111111 000000000 011134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCcC---
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRKAGL-EP-SDKCVALILSACEKE----------NQLNRALEFLIDLERDGFMVG--- 379 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~--- 379 (423)
.+...|...|++++|...|++..+..- .+ ....+..+..++... |++++|...++++.+.. |+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 455566666666666666666655211 11 133455555555544 66666666666666531 22
Q ss_pred -HHHHHHHHHHHHHcCCHHHH
Q 014507 380 -KEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 380 -~~~~~~l~~~~~~~g~~~~A 399 (423)
......+-..+.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23344444444455554443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=3.1e-08 Score=86.27 Aligned_cols=186 Identities=8% Similarity=-0.076 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CC-CHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YV-GSEVY 278 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~ 278 (423)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555566666777777777777777776653 112 45666677777777777777777777766422 11 23455
Q ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 279 KALLRGYSM--------NGNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 279 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
..+..++.. .|++++|...|+++.+. .|+. .....+.. +...... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 556666666 67777777777766654 2321 11111110 1110000 011246
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHhcccC
Q 014507 350 LILSACEKENQLNRALEFLIDLERDGFM-V-GKEASCTLAAWFKRL----------GVVEEVEHVLREYGLRE 410 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 410 (423)
.+...+...|++++|...++++.+.... + ....+..+..+|.+. |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 6788899999999999999999875211 1 356778888888876 99999999999886543
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=5e-08 Score=81.89 Aligned_cols=172 Identities=11% Similarity=0.012 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV----------------MVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
...+-.....+...|++++|...|++..+.... +...|.. +...|.+.|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444556677889999999999998887322 4455666 88888899999999999998888
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCH-
Q 014507 234 LGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN--SEGAQRVFEAIQFAGITPDA- 310 (423)
Q Consensus 234 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~- 310 (423)
.. +-+...+..+..++...|++++|...|++..+.... +..++..+...|...|+ .+.+...++... .|+.
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 65 446788888999999999999999999998886544 67788888877766554 344555555554 3443
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507 311 -RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVAL 350 (423)
Q Consensus 311 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 350 (423)
..+.....++...|++++|...|++..+ +.|+......
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 3344455566778889999999998876 5677654433
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.7e-07 Score=78.80 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHH
Q 014507 188 NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG----MLDRGEVLL 263 (423)
Q Consensus 188 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 263 (423)
+|.+.|++..+.| +...+..+...|...+++++|.++|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 66667777777777777777777777777654 55666666666666 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507 264 REMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQM----AGQSQKAYTAFQ 334 (423)
Q Consensus 264 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 334 (423)
++..+.| +...+..|-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|.++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 44566666666666 67777777777777765411 015666677777766 667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 014507 335 NMRKAGLEPSDKCVALILSACEKE-N-----QLNRALEFLIDLERDGF 376 (423)
Q Consensus 335 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 376 (423)
+..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77664 12334555566665543 2 67777777777766654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=1.4e-07 Score=82.93 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=155.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
-+.+++...|+++.. ..-.|....+..+...+ ..+ |...|++..+.+ .++..++..+..++...|
T Consensus 50 ~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 355777777776642 12334443444333333 322 778888887765 566777778899999999
Q ss_pred ChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HHcC--
Q 014507 255 MLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-----DARMCALLINAY--QMAG-- 324 (423)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~--~~~g-- 324 (423)
++++|++++.+..+.+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...+..++ ...|
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCc
Confidence 999999999998776642 26678889999999999999999999999875 56 355666666663 3334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCcCHHHHHHHHHHHHHcCC
Q 014507 325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-----G----FMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g----~~~~~~~~~~l~~~~~~~g~ 395 (423)
++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. . -+-++.++..++......|+
T Consensus 193 ~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 899999999999764 466444445555889999999999999977653 1 13467777677777777887
Q ss_pred HHHHHHHHHHhccc
Q 014507 396 VEEVEHVLREYGLR 409 (423)
Q Consensus 396 ~~~A~~~~~~m~~~ 409 (423)
+|.++++++.+.
T Consensus 271 --~a~~l~~qL~~~ 282 (310)
T 3mv2_B 271 --DTEDLTNQLVKL 282 (310)
T ss_dssp --TTHHHHHHHHHT
T ss_pred --HHHHHHHHHHHh
Confidence 889999988764
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1e-06 Score=78.10 Aligned_cols=217 Identities=10% Similarity=-0.073 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CChh
Q 014507 187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--NLKMAEETFEEIKLLGEPLDKRSYGSMVMAY----VRA---GMLD 257 (423)
Q Consensus 187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---~~~~ 257 (423)
++|+.+++.+...... +...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4555555555554322 3444554444444455 5555555555555543 12333333333333 233 4555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 014507 258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE--GAQRVFEAIQFAGITPDARMCALLINAYQMAGQ------SQKA 329 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~a 329 (423)
+++.+++++.+.... +..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.|+ ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 555555555554433 4555555555555555555 5555555555543 2255555554444444444 5556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 330 YTAFQNMRKAGLEPSDKCVALILSACEKENQL-NRALEFLIDLERDG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
++.++.+.... +-|...|+.+-..+.+.|+. +.+..+..++.+.+ -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666555532 22455555555555555543 22334444443321 1234555666666666666666666666665
Q ss_pred cc
Q 014507 407 GL 408 (423)
Q Consensus 407 ~~ 408 (423)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=3.8e-07 Score=76.71 Aligned_cols=177 Identities=15% Similarity=0.073 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 014507 222 KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG----NSEGAQRV 297 (423)
Q Consensus 222 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~ 297 (423)
.+|.++|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|-..|.. + +.++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888865 78889999999999999999999999999876 56788888888888 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 014507 298 FEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLE-PSDKCVALILSACEK----ENQLNRALEFL 368 (423)
Q Consensus 298 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 368 (423)
|++..+.| +...+..+...|.. .+++++|.++|++..+.|.. -+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998754 77788888888877 88999999999999886521 026778888888888 88999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhcccC
Q 014507 369 IDLERDGFMVGKEASCTLAAWFKRL-G-----VVEEVEHVLREYGLRE 410 (423)
Q Consensus 369 ~~m~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 410 (423)
++..+. ..+...+..|..+|... | ++++|.+.|++-.+.+
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999886 24455677788888764 3 8999999999876654
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=1.4e-07 Score=84.28 Aligned_cols=187 Identities=9% Similarity=-0.024 Sum_probs=116.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKAL 281 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l 281 (423)
...|...|++++|...|.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+. |-.. -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566778888888877776542 1110 1346777777888888888888888776542 2111 13466777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS-DKCVALI 351 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l 351 (423)
...|.. |++++|...|++.... |-.+ ...+++.+...|...|++++|.+.|++..+. +..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 777777 8888888888776542 1100 1456777788888888888888888877652 21121 2255566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--CCcC--HHHHHHHHHHHHHcCCHHHHHH
Q 014507 352 LSACEKENQLNRALEFLIDLERDG--FMVG--KEASCTLAAWFKRLGVVEEVEH 401 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~g--~~~~--~~~~~~l~~~~~~~g~~~~A~~ 401 (423)
...+...|++++|...+++.. .. +... ......++.++ ..|+.+.+.+
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 666677788888888888877 31 1111 12344455554 5677666555
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=2.3e-08 Score=99.66 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=129.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507 216 SKAGNLKMAEETFEEIK--------LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM 287 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 287 (423)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|++..+.+.. +...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56788888888888877 332 335567777888888888888888888888775443 66778888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEF 367 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 367 (423)
.|++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877652 2256777788888888888888 88888877643 22466777888888888888888888
Q ss_pred HHHHHHCCCCcC-HHHHHHHHHHHHHcCC--------HHHHHHHHHHh
Q 014507 368 LIDLERDGFMVG-KEASCTLAAWFKRLGV--------VEEVEHVLREY 406 (423)
Q Consensus 368 ~~~m~~~g~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~m 406 (423)
+++..+. .|+ ...+..+..++...|+ +++|.+.+..+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 8877653 354 5566666666655443 55555555544
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=7.3e-06 Score=72.54 Aligned_cols=220 Identities=4% Similarity=-0.093 Sum_probs=159.2
Q ss_pred CchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CC
Q 014507 150 HPLYLQVAELALLEESFEANIRDYTKIIHGYGKKM--QIQNAENTLLAMKRRGFICDQVTLTVMVVMY----SKA---GN 220 (423)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~ 220 (423)
..++|......++..+ +-+...|+.--..+...+ +++++++.++.+.....+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3345666666665554 234455666666666666 888888888888877544 556666544444 444 67
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------HH
Q 014507 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD--RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN------SE 292 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~ 292 (423)
+++++.+++++.+.. +-+..+|+.-...+.+.|.++ ++++.++++.+.+.. |...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888875 457788888777788888887 888888888887766 77788777777777776 88
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK-AYTAFQNMRKAG--LEPSDKCVALILSACEKENQLNRALEFLI 369 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 369 (423)
++++.++.+.... +-|...|+..-..+.+.|+..+ +.++..++.+.+ -..+...+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888887753 3488888888888888887444 555666655432 13467788888888989999999999999
Q ss_pred HHHHC
Q 014507 370 DLERD 374 (423)
Q Consensus 370 ~m~~~ 374 (423)
.+.+.
T Consensus 283 ~l~~~ 287 (306)
T 3dra_A 283 LLKSK 287 (306)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98764
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=1.5e-07 Score=83.36 Aligned_cols=164 Identities=11% Similarity=0.014 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS-MV 247 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li 247 (423)
+...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...+++.... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3344455555566666666666666666555332 4555666666666666666666666655443 233332221 22
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQMAGQS 326 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~ 326 (423)
..+...++.+.|...+++..+.... +...+..+...+...|++++|.+.|+++...... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2244455555566666555554332 4555556666666666666666666655553211 0144555556666666666
Q ss_pred HHHHHHHHHH
Q 014507 327 QKAYTAFQNM 336 (423)
Q Consensus 327 ~~a~~~~~~m 336 (423)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555543
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=5.7e-08 Score=96.83 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=122.3
Q ss_pred HhcCCchHHHHHHHHHhh-------cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 146 KLMEHPLYLQVAELALLE-------ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA 218 (423)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 218 (423)
...++.++|...+...++ ...+.+...+..+...+...|++++|.+.|++..+.... +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 567777777777776651 112345667777777888888888888888887776433 667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507 219 GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVF 298 (423)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 298 (423)
|++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877764 3356777778888888888888 8888887776543 5667788888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 014507 299 EAIQFAGITPD-ARMCALLINAYQMAGQ 325 (423)
Q Consensus 299 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 325 (423)
++..+. .|+ ...|..+..++...|+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877654 443 4566666666655444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=4.9e-07 Score=76.77 Aligned_cols=185 Identities=10% Similarity=0.011 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-LDK-RSYGS 245 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~~ 245 (423)
...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|...|++..+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666777788888888888887765332 1 1346666777888888888888888887765311 111 23444
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 014507 246 MVMAYVR------------------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT 307 (423)
Q Consensus 246 li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 307 (423)
+..++.. .|++++|...|+++.+.... +......... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----------l~~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----------LVFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----------HHHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----------HHHHHHHHH-----
Confidence 4444443 34455555555555543211 1111111000 000000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS----DKCVALILSACEKENQLNRALEFLIDLERDG 375 (423)
Q Consensus 308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 375 (423)
.....+...|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01134567788899999999999998874 343 2567788888999999999999999888763
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=1.1e-07 Score=92.70 Aligned_cols=154 Identities=7% Similarity=-0.138 Sum_probs=102.1
Q ss_pred cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET 227 (423)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 227 (423)
.|+.++|...++...+.. +.+...|..+...+...|++++|.+.+++..+.... +...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356667777666665543 335677777888888888888888888887776433 567777788888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC
Q 014507 228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN---GNSEGAQRVFEAIQFA 304 (423)
Q Consensus 228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 304 (423)
|++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88877764 345677778888888888888888888887775433 566777778888888 8888888888877765
Q ss_pred C
Q 014507 305 G 305 (423)
Q Consensus 305 g 305 (423)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.4e-07 Score=83.53 Aligned_cols=165 Identities=7% Similarity=-0.010 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK-ALL 282 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li 282 (423)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 45566677777778888888888888877764 3356777778888888888888888887776543 3433222 222
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE-PSDKCVALILSACEKENQL 361 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 361 (423)
..+.+.++.++|.+.+++..... +.+...+..+...+...|++++|.+.|.++.+..-. .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33555666666777777766542 335667777777777777777777777777763211 1245667777777777777
Q ss_pred HHHHHHHHHHH
Q 014507 362 NRALEFLIDLE 372 (423)
Q Consensus 362 ~~a~~~~~~m~ 372 (423)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77776666543
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=1.8e-07 Score=91.26 Aligned_cols=154 Identities=13% Similarity=0.013 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507 183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL 262 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 262 (423)
.|++++|.+.+++..+.... +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998776333 67889999999999999999999999998864 44678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA---GQSQKAYTAFQNMRKA 339 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 339 (423)
+++..+.... +...+..+...|.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999886543 67889999999999999999999999988753 33678888899999999 9999999999998875
Q ss_pred C
Q 014507 340 G 340 (423)
Q Consensus 340 ~ 340 (423)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=8.9e-08 Score=77.96 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=75.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA-YVRA 253 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~ 253 (423)
.....+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3445555666666666666655543221 45556666666666666666666666554432 233322221111 1111
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTA 332 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 332 (423)
++...+...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2222344555554443222 34455555555555555555555555554432111 233445555555555555555555
Q ss_pred HHHH
Q 014507 333 FQNM 336 (423)
Q Consensus 333 ~~~m 336 (423)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 108
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=5e-06 Score=81.91 Aligned_cols=334 Identities=8% Similarity=-0.013 Sum_probs=203.5
Q ss_pred cceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCC---HHHHHHHHHHhc--C---CChhhHHH
Q 014507 73 SMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGN---LSDLLAAWVRFM--K---PRRADWLA 140 (423)
Q Consensus 73 ~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~--~---p~~~~~~~ 140 (423)
+...|..++....+ +..+.+..+|+++.. .....|...+..-.+.|+ ++.+.++|++.+ . |+...|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45778877776653 344777778887765 345678888887777788 999999999973 2 78877777
Q ss_pred HHHHHHhcCCc----hHH----HHHHHHHh-hccc-CC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcC
Q 014507 141 VLKQLKLMEHP----LYL----QVAELALL-EESF-EA-NIRDYTKIIHGYGK---------KMQIQNAENTLLAMKRRG 200 (423)
Q Consensus 141 ll~~~~~~~~~----~~a----~~~~~~~~-~~~~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g 200 (423)
-+.-..+.++. +.+ ..+++..+ ..|. .+ +...|...+..... .++++.+..+|+......
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 66655554443 222 34444433 2355 44 34677777765432 334667777777776432
Q ss_pred CCCCHHHHH---HHHHHHH----------HcCCHHHH-------------------------------------------
Q 014507 201 FICDQVTLT---VMVVMYS----------KAGNLKMA------------------------------------------- 224 (423)
Q Consensus 201 ~~p~~~~~~---~li~~~~----------~~g~~~~A------------------------------------------- 224 (423)
...-..+|. .+-.... ...+++.|
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 111112221 1111100 00011112
Q ss_pred ------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhCCCCCCHHHHH
Q 014507 225 ------------------------EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE-VLLREMDAQEVYVGSEVYK 279 (423)
Q Consensus 225 ------------------------~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~ 279 (423)
..+|++.... ++.....|-....-+...|+.++|. ++|++.... ++.+...+-
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl 382 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 2233333322 1223344444444455677888886 888888764 334666677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 280 ALLRGYSMNGNSEGAQRVFEAIQFAG---------ITPD------------ARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
..+...-+.|++++|.++|+.+.... -.|+ ...|...+....+.|..+.|..+|.+..+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888899999999998877531 0132 23577778888888889999999998887
Q ss_pred C-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 339 A-GLEPSDKCVALILSACEKE-NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 339 ~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
. + .+....|...+..-.+. ++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++.....
T Consensus 463 ~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 463 LKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 5 2 12233443333322333 4588888898888776 44456667788888888888999999988766543
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=3.6e-07 Score=77.61 Aligned_cols=186 Identities=9% Similarity=0.005 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCH-HHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-L-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGS-EVYK 279 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~ 279 (423)
+...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888899999999999998875321 1 1356777888899999999999999998875433 111 2444
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 280 ALLRGYSM------------------NGNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 280 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
.+..++.+ .|+.++|...|+++.+. .|+. ..+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 34556666666665543 2321 111111100 00000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 341 LEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG----KEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 341 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
.....+...+.+.|++++|...++++.+.- |+ ...+..+..+|.+.|++++|.+.++.+...+.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011345667889999999999999998752 33 35688899999999999999999998876543
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=3.1e-08 Score=78.43 Aligned_cols=109 Identities=8% Similarity=0.014 Sum_probs=46.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014507 181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE 260 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 260 (423)
...|++++|+..++........ +...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3344444444444443332100 12223334444445555555555555444432 223444444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507 261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSE 292 (423)
Q Consensus 261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 292 (423)
..|++..+.... +..++..+...|.+.|+.+
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChH
Confidence 444444443222 3334444444444444443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=1.1e-07 Score=77.42 Aligned_cols=158 Identities=10% Similarity=0.021 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhC
Q 014507 210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMN 288 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~ 288 (423)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... +...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 34445556666666666666554432 22445555666666666666666666655544322 22222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEF 367 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 367 (423)
++..+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11122444444444321 1134445555555555555555555555554432111 123444445555555555555555
Q ss_pred HHHH
Q 014507 368 LIDL 371 (423)
Q Consensus 368 ~~~m 371 (423)
+++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=4.8e-07 Score=80.84 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC-----CCHHHHHHHHHHHHccCCHHHHHH
Q 014507 117 TGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE-----ANIRDYTKIIHGYGKKMQIQNAEN 191 (423)
Q Consensus 117 ~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~ 191 (423)
.++++.|.+.|.+. ...+...|+++.|...+....+.... .-...|+.+...|.+.|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46677777666542 33455556666665555444332110 012345555555556666666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHHcCChhHHHH
Q 014507 192 TLLAMKRR----GFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP---L--DKRSYGSMVMAYVRAGMLDRGEV 261 (423)
Q Consensus 192 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~~~~~~a~~ 261 (423)
.|++..+. |-.. -..++..+...|.. |++++|+..|++..+.... + ...++..+...|.+.|++++|..
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554332 1000 12344445555544 5555555555554432100 0 02344444555555555555555
Q ss_pred HHHHHHhC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 262 LLREMDAQ----EVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 262 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
.|++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55544431 11111 1133334444444455555555554444
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=6.8e-06 Score=72.72 Aligned_cols=161 Identities=11% Similarity=-0.026 Sum_probs=84.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGE-PLDK----RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKAL 281 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l 281 (423)
+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766665321 1111 12223444455555666666666666653211 11 2246666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQF----A-GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AGLEPS-DKCVAL 350 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ 350 (423)
...|...|++++|...|+++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666665552 1 1111 123555666666666666666666665543 222222 445555
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHH
Q 014507 351 ILSACEKENQ-LNRALEFLIDLE 372 (423)
Q Consensus 351 li~~~~~~g~-~~~a~~~~~~m~ 372 (423)
+...+.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666555543
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=6.8e-06 Score=72.69 Aligned_cols=162 Identities=12% Similarity=-0.029 Sum_probs=124.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQEV-YVGS----EVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PD----ARMCA 314 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 314 (423)
..+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999887432 2332 23445777788888999999999999873222 23 34789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHH
Q 014507 315 LLINAYQMAGQSQKAYTAFQNMRK----A-GLEPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG-KEAS 383 (423)
Q Consensus 315 ~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~ 383 (423)
.+..+|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999874 1 22222 347889999999999999999999987643 22232 6789
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHh
Q 014507 384 CTLAAWFKRLGV-VEEVEHVLREY 406 (423)
Q Consensus 384 ~~l~~~~~~~g~-~~~A~~~~~~m 406 (423)
..+..+|.+.|+ +++|.+.+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999994 68888777654
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=5.7e-06 Score=73.21 Aligned_cols=166 Identities=11% Similarity=-0.035 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC--
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK------RSYGSMVMAYVRAGMLDRGEVLLREMDAQEV---YVG-- 274 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~-- 274 (423)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667777888888888888777664322 22 2233455556677788888888888765321 112
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC
Q 014507 275 SEVYKALLRGYSMNGNSEGAQRVFEAIQF---A-GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS 344 (423)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~ 344 (423)
..+++.+...|...|++++|...+++..+ . +..+ ...+++.+...|...|++++|.+.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44778888888888888888888887662 1 1111 1257788888888889999888888877642 21121
Q ss_pred -HHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 014507 345 -DKCVALILSACEKENQLNRA-LEFLIDLE 372 (423)
Q Consensus 345 -~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 372 (423)
..+|..+...+...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56778888888888888888 66676654
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.71 E-value=4.3e-07 Score=71.71 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=67.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
+-.+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334556666666666666666666665333 55666666666666666666666666666653 2345666666666666
Q ss_pred cCChhHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 253 AGMLDRGEVL-LREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 253 ~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
.|+++++.+. +++..+.... +..+|......+.+.|
T Consensus 112 ~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred cCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666554443 4555554332 4555555555555554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=2.6e-06 Score=71.20 Aligned_cols=127 Identities=11% Similarity=-0.026 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
.+..+...+...|++++|...|++.. .|+...|..+...+...|++++|...|++..+.... +...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34455566666777777777776552 456666777777777777777777777766665422 5566666666777
Q ss_pred hCCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQFAGIT--------------P-DARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
..|++++|.+.|+...+.... | ....+..+..+|...|++++|.+.|+...+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777666654211 0 124556666666666666666666666655
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=1.2e-05 Score=72.16 Aligned_cols=217 Identities=8% Similarity=-0.082 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-ChhHHHHH
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA-G-MLDRGEVL 262 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a~~~ 262 (423)
.++|+++++.+...... +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555555555554332 4444554444444445 3555555555555543 22444555544444444 4 55555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSMNGNSE--------GAQRVFEAIQFAGITPDARMCALLINAYQMAGQ-------SQ 327 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~ 327 (423)
++++.+.... |..+|+.-...+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 5555554433 4444444333333333333 5555555555543 2255556655555555554 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCcCHHH
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQL--------------------NRALEFLIDLERDG-----FMVGKEA 382 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~~~~~~ 382 (423)
++++.+++..... +-|...|+.+-..+.+.|+. ....++..++...+ -.++...
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 6666666655532 22455555544444444432 22222222222211 1356666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 383 SCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
..-|++.|...|+.++|.++++.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777777777777777777775
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=2.1e-06 Score=71.88 Aligned_cols=127 Identities=16% Similarity=-0.005 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR 252 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 252 (423)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|...|++..+.. +.+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4456677788899999998888763 5578888888888999999999999998888764 4467788888888999
Q ss_pred cCChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 253 AGMLDRGEVLLREMDAQEVY--------------V-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
.|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999888875322 1 2367888888999999999999999998875
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=2e-06 Score=68.62 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444455555555555555555555432 224445555555555555555555555555543221 3445555555555
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQFAGITPDARMCAL--LINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m 336 (423)
..|++++|...+++..... +.+...+.. ....+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555554431 112333322 222244455555555555443
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=5.8e-06 Score=73.16 Aligned_cols=166 Identities=11% Similarity=-0.025 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--H
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG-----SEVYKALLRGYSMNGNSEGAQRVFEAIQFAG---ITPD--A 310 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~ 310 (423)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455677788899999999999998887543311 1234456677888999999999999887532 1222 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-C
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPS-----DKCVALILSACEKENQLNRALEFLIDLERD----GFMV-G 379 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~ 379 (423)
.+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998731 11222 258889999999999999999999987653 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHh
Q 014507 380 KEASCTLAAWFKRLGVVEEV-EHVLREY 406 (423)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m 406 (423)
..+|..+..+|.+.|++++| ...+++-
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 67788999999999999999 7766653
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=4.8e-06 Score=73.22 Aligned_cols=197 Identities=8% Similarity=-0.007 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507 204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 283 (423)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45566777777778888888888888777753 336777777888888888888888888887776433 5677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAG----ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 359 (423)
+|...|++++|...|+...+.+ ..-....+..+ ...+. . -+..........+......+ ..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHH-HHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHH-HHH-HHH
Confidence 8888888888888887766421 00111112111 11111 1 11222233333444333333 322 257
Q ss_pred CHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHc-CCHHHHHHHHHHhcccCCcCCC
Q 014507 360 QLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRL-GVVEEVEHVLREYGLRETYSKI 415 (423)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~ 415 (423)
+.++|.+.+++..+. .|+ ......+...+.+. +.+++|.++|++..+.......
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~ 205 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDI 205 (281)
T ss_dssp HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCC
T ss_pred HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence 888888888776654 444 33344444445554 6788999999888765443333
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=2e-06 Score=68.59 Aligned_cols=130 Identities=9% Similarity=-0.079 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345677788888999999999999998876433 67888889999999999999999999988864 4467888889999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVY--KALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
+...|++++|...|++..+.... +...+ ......+.+.|++++|.+.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999998876433 44444 334444777889999998887654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.9e-06 Score=64.77 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
..+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444555555555555555555544321 134444445555555555555555555544432 22344444444444
Q ss_pred HHcCChhHHHHHHHHHHh
Q 014507 251 VRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~ 268 (423)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444555555544444444
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=3.4e-06 Score=63.35 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY 285 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 285 (423)
..|..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...++++.+.... +..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 344445555555555555555555554432 223444444455555555555555555544443211 333444444444
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 014507 286 SMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~ 303 (423)
...|++++|...++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444433
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=7.7e-07 Score=73.76 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCh
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEP-LDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~ 256 (423)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555555556665555555555431 101 1123344444555555555
Q ss_pred hHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507 257 DRGEVLLREMDAQ----EVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 257 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (423)
++|...+++..+. +-.| ....+..+...+...|++++|...+++.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555544331 1011 1223444444444555555555554443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=2.7e-06 Score=64.84 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=51.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.+......+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444555555555555555555555554322 45555555555555555555555555555543 224455555555555
Q ss_pred HcCChhHHHHHHHHHHhC
Q 014507 252 RAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~ 269 (423)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555553
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.57 E-value=0.0001 Score=66.01 Aligned_cols=218 Identities=6% Similarity=-0.052 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 014507 152 LYLQVAELALLEESFEANIRDYTKIIHGYGKKM-QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA-G-NLKMAEETF 228 (423)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~ 228 (423)
++|......++..+ +-+..+|+.--..+...| .++++++.++.+.....+ +..+|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444433 223344444444444445 477777777777776544 666676666555555 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------HHH
Q 014507 229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLD--------RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN-------SEG 293 (423)
Q Consensus 229 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~ 293 (423)
+++.+.. +.+..+|+--...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++ +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 7777654 336666666555555555555 777777777776655 77777777777766665 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 014507 294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQS--------------------QKAYTAFQNMRKAG-----LEPSDKCV 348 (423)
Q Consensus 294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~ 348 (423)
+++.+++..... +-|...|+-+-..+.+.|+. .+..++..++...+ -.++...+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 777777766542 33677777766666665543 23333333333221 13567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 349 ALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 349 ~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 88888888888888899888888655
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.2e-06 Score=72.59 Aligned_cols=157 Identities=11% Similarity=0.024 Sum_probs=111.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhCCC
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYV-GSEVYKALLRGYSMNGN 290 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~ 290 (423)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555432 223567888899999999999999999988765 22222 34577888889999999
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcC
Q 014507 291 SEGAQRVFEAIQFA----GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKEN 359 (423)
Q Consensus 291 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g 359 (423)
+++|.+.+++.... +-.| ....+..+...+...|++++|.+.+++..+. +... -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999876542 2111 2345777888899999999999999887642 2111 1234677788888899
Q ss_pred CHHHHHHHHHHHHH
Q 014507 360 QLNRALEFLIDLER 373 (423)
Q Consensus 360 ~~~~a~~~~~~m~~ 373 (423)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888887654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=3.5e-06 Score=63.84 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM 287 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 287 (423)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHH
Confidence 3333344444444444444444443322 123333333444444444444444444443332211 23333333344444
Q ss_pred CCCHHHHHHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQ 302 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~ 302 (423)
.|++++|...+++..
T Consensus 93 ~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 93 LNKHVEAVAYYKKAL 107 (131)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 444444444444333
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=0.00015 Score=68.98 Aligned_cols=151 Identities=9% Similarity=0.001 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHhc--CCChhhHHHHHHHHHhcCC-chHHHHHHHHHhhc-cc-CCCHHHHHHHHHHHHc----cCCHHH
Q 014507 118 GNLSDLLAAWVRFM--KPRRADWLAVLKQLKLMEH-PLYLQVAELALLEE-SF-EANIRDYTKIIHGYGK----KMQIQN 188 (423)
Q Consensus 118 g~~~~a~~~~~~~~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~~~~~~ 188 (423)
|+++.+..+|++.+ .|+...|..-+.-..+.+. .+....+++..+.. |. ..+...|...+..+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 77888888888874 4777777777766666553 23445555544432 43 2356777777766542 356777
Q ss_pred HHHHHHHHHHcCCCCCHHHH------------------------------------------------HHHHHHHHHc--
Q 014507 189 AENTLLAMKRRGFICDQVTL------------------------------------------------TVMVVMYSKA-- 218 (423)
Q Consensus 189 a~~~~~~m~~~g~~p~~~~~------------------------------------------------~~li~~~~~~-- 218 (423)
+.++|++........-...| ...+.---..
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 88888877663211111111 1111110000
Q ss_pred CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 219 GN-----LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 219 g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
|- .+.+..+|+++.... +.+...|...+.-+.+.|+++.|..++++....
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 00 233555666666543 445666777777777788888888888888776
No 132
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.54 E-value=1.7e-05 Score=78.21 Aligned_cols=230 Identities=8% Similarity=-0.038 Sum_probs=159.8
Q ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 155 QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAE-NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
..+++..+.. .+.+...|-..+..+...|+.++|. .+|++.... ++.+...|-..+...-+.|++++|.++|+++.+
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555544 3457778888888888888888886 899888765 344666777788888888999999999988876
Q ss_pred cCC---------CCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhC-CC
Q 014507 234 LGE---------PLD------------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMN-GN 290 (423)
Q Consensus 234 ~g~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~ 290 (423)
... .|+ ...|...+....+.|..+.|..+|.+..+. +.. ....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCC
Confidence 310 132 235777777777888899999999988876 221 233444333333344 45
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP--SDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
.+.|..+|+...+. +..+...|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999888765 34466777788888888899999999999887754222 2456777777777889999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHH
Q 014507 369 IDLERDGFMVGKEASCTLAAWF 390 (423)
Q Consensus 369 ~~m~~~g~~~~~~~~~~l~~~~ 390 (423)
+++.+. .|+......+++-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 988875 24433344444433
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=1e-06 Score=71.53 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=70.7
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh--h
Q 014507 181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA-YVRAGML--D 257 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~--~ 257 (423)
...|++++|...++...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 345666666666666655532 255666666666667777777777776666543 2345556566666 5566666 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
+|...+++..+.... +...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666654332 4555666666666666666666666666554
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=5e-06 Score=63.31 Aligned_cols=95 Identities=14% Similarity=-0.016 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
.+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.+.. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444555555555555555555555442 234445555555555555555555555555443322 3444444555555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~ 303 (423)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=6.7e-06 Score=64.76 Aligned_cols=102 Identities=13% Similarity=-0.018 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 014507 275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILS 353 (423)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 353 (423)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..+. .| +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 3456666777777788888888887777653 236777777777788888888888888777763 33 3566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 014507 354 ACEKENQLNRALEFLIDLERDGFMVGKE 381 (423)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 381 (423)
++...|++++|...|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 777888888888888777764 34443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=3.3e-06 Score=64.03 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 445677777888888888888888888877633 367778888888888888888888888888764 345778888888
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
.+...|++++|...+++..+.... +...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 888888888888888888776432 55666667666666554
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=1e-06 Score=77.66 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM 248 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 248 (423)
+...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5567778888899999999999999999887433 78888999999999999999999999988764 446788889999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 328 (423)
++...|++++|...|++..+.+.. +...+...+....+ ..++. -+..........+......+-. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 999999999999999988764211 00011111111111 11111 1222222333444444433322 2 3688899
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHHc-CCHHHHHHHHHHHHHC
Q 014507 329 AYTAFQNMRKAGLEPSDKCVA-LILSACEKE-NQLNRALEFLIDLERD 374 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~-g~~~~a~~~~~~m~~~ 374 (423)
|.+.++...+ ..|+..... .+...+.+. +.++++.++|+++.+.
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9988887765 356644333 333333333 6678899999877653
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=2.6e-06 Score=64.97 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344444555555555555555555555443211 34445555555555555555555555554432 2234444444445
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 014507 250 YVRAGMLDRGEVLLREMDA 268 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~ 268 (423)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544444
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=5.2e-06 Score=63.23 Aligned_cols=96 Identities=10% Similarity=-0.053 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 34444444444444444444444444443221 33444444444444444444444444444321 12334444444444
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 014507 321 QMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~~ 338 (423)
...|++++|.+.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1.2e-06 Score=71.10 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=75.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCH--HH
Q 014507 217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMNGNS--EG 293 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 293 (423)
..|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4566677777777766653 345667777777777777777777777777664332 45566666666 6666776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
|...++...... +.+...+..+..+|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777666542 224566666667777777777777777776653
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=9.5e-06 Score=63.87 Aligned_cols=95 Identities=11% Similarity=-0.035 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 286 (423)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444444555555555555555555442 224444555555555555555555555555443322 3344444444555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~ 303 (423)
+.|++++|...|+...+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544444
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.3e-05 Score=69.54 Aligned_cols=187 Identities=9% Similarity=-0.119 Sum_probs=112.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------cCCC----C
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVM-------VVMYSKAGNLKMAEETFEEIKL------------LGEP----L 238 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~~----~ 238 (423)
..++...|.+.|.+..+.... ....|..+ ...+.+.++..+++..+..-.+ .|.- .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467788888888888777443 55666655 3444444444444444443333 1100 0
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----H
Q 014507 239 ----DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----A 310 (423)
Q Consensus 239 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~ 310 (423)
-....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .|+ .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence 01223345566667778888888777776644 3333555555577777888888877764443 222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 374 (423)
..+..+-.++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3556667777777888888888777764332243 234555666677778888888888777764
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=5.2e-06 Score=71.93 Aligned_cols=190 Identities=13% Similarity=-0.008 Sum_probs=139.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHh------------CCCC-----
Q 014507 217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSM-------VMAYVRAGMLDRGEVLLREMDA------------QEVY----- 272 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~----- 272 (423)
..++.+.|.+.|.+..+.. +-....|..+ ...+.+.++..++...+..-.+ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999874 3356788877 4555555555666555555444 2210
Q ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 014507 273 ---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKC 347 (423)
Q Consensus 273 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~ 347 (423)
--....-.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 01234556678889999999999999998865 3544466666678899999999999998554321 111 236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 348 VALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 348 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888899999999999999999885443253 4466678888999999999999999987643
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=6.2e-06 Score=74.61 Aligned_cols=87 Identities=8% Similarity=-0.100 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY 320 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 320 (423)
.+|..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 44455555555555555555555555543322 44455555555555555555555555554431 12344555555555
Q ss_pred HHcCCHHHH
Q 014507 321 QMAGQSQKA 329 (423)
Q Consensus 321 ~~~g~~~~a 329 (423)
...|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555555
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=8e-06 Score=73.85 Aligned_cols=86 Identities=7% Similarity=-0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
.|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+...+.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 45555555555555555555555555432 2244555555555555555555555555555421 113444555555555
Q ss_pred HcCCHHHH
Q 014507 357 KENQLNRA 364 (423)
Q Consensus 357 ~~g~~~~a 364 (423)
..|+.+++
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=2.4e-05 Score=57.89 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444455555555555555555443211 34444445555555555555555555544432 223444444444455
Q ss_pred HcCChhHHHHHHHHHHh
Q 014507 252 RAGMLDRGEVLLREMDA 268 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~ 268 (423)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555544444
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=8.2e-07 Score=73.65 Aligned_cols=57 Identities=7% Similarity=-0.057 Sum_probs=23.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
+......|+++++.+.|+.-.+... .....+..+...+.+.|++++|...|++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333444555555544442221100 02344555566666666666666666666653
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=5.3e-06 Score=65.19 Aligned_cols=99 Identities=18% Similarity=0.057 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS 353 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 353 (423)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455566666777777777777777666542 2356666677777777777777777777766532 123556666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 014507 354 ACEKENQLNRALEFLIDLERD 374 (423)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~~ 374 (423)
++...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777766653
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=2.4e-06 Score=67.19 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=21.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444433322 2233333333333444444444444444333
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3.2e-05 Score=57.20 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG 284 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 284 (423)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3445555566666666666666666665543 234555555666666666666666666665554322 34455555555
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 014507 285 YSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~ 303 (423)
+...|++++|.+.++...+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.5e-05 Score=60.43 Aligned_cols=95 Identities=15% Similarity=-0.009 Sum_probs=50.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
.|......+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444455555555555555555555554322 44555555555555555555555555555543 223445555555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 014507 252 RAGMLDRGEVLLREMDA 268 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~ 268 (423)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.3e-05 Score=59.34 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
..|..+..++...|++++|.+.|++.
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33333344444444444444444433
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.6e-06 Score=71.83 Aligned_cols=132 Identities=12% Similarity=-0.050 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TP--------------DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL 341 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 341 (423)
.+..+...+.+.|++++|...|++...... .| ....|..+..+|...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444455555555555555555544210 01 02566667777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH-HHHHHhcccC
Q 014507 342 EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVE-HVLREYGLRE 410 (423)
Q Consensus 342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 410 (423)
+.+...+..+..++...|++++|...|++..+.. +-+...+..+..++...|+.+++. ..|+.|-..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2346667777777777777777777777776642 234566666777777777666666 4555554433
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.9e-05 Score=70.99 Aligned_cols=95 Identities=12% Similarity=-0.013 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--
Q 014507 311 RMCALLINAYQMAGQSQKAYTAFQNMRKA--GL--EPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG-- 379 (423)
Q Consensus 311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-- 379 (423)
.++..+...|...|++++|..++++.... +. .+. ...+..++..|...|++++|..++++.... +.++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 34444555555555555555555544321 11 111 234455555555555555555555544321 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 380 KEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
...+..+...+...|++++|...|.+
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22334444444455555555554443
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=1.3e-05 Score=58.71 Aligned_cols=98 Identities=6% Similarity=-0.126 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL--DKRSYGSMV 247 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li 247 (423)
...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344455555666666666666666666555322 45555666666666666666666666665542 22 355555666
Q ss_pred HHHHHc-CChhHHHHHHHHHHhC
Q 014507 248 MAYVRA-GMLDRGEVLLREMDAQ 269 (423)
Q Consensus 248 ~~~~~~-~~~~~a~~~~~~m~~~ 269 (423)
.++.+. |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666665554
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1.6e-05 Score=60.20 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CC----HHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY--VG----SEVYKA 280 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~----~~~~~~ 280 (423)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444555555555554444432 223444444444444445555555444444432110 11 334444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQF 303 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~ 303 (423)
+...+.+.|++++|.+.|+...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=3.6e-05 Score=58.97 Aligned_cols=96 Identities=10% Similarity=-0.074 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+...|++++|...|+...+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444445555555555555544443221 34444444444444555555555544444432 2234444444444
Q ss_pred HHHcCChhHHHHHHHHHH
Q 014507 250 YVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~ 267 (423)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 158
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.26 E-value=0.0011 Score=62.92 Aligned_cols=336 Identities=8% Similarity=-0.085 Sum_probs=200.3
Q ss_pred hhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH--HHHHhcCChhhhh------hhHHHHHHHHhccCC--
Q 014507 47 RSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ--KQAISQFPRKMTK------RCKAFVKQIICVSPE-- 116 (423)
Q Consensus 47 ~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~--~~~a~~~~~~m~~------~~~~~~~~ll~~~~~-- 116 (423)
-.+.++.+..+ |+.-+. ..|+. ..|...+....+.+ .+.+..+|+.... .+...|...+..+..
T Consensus 26 P~~~~e~~~~i--feral~--~~ps~--~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 26 MSKDYRSLESL--FGRCLK--KSYNL--DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp HTTCHHHHHHH--HHHHST--TCCCH--HHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCCCHHHHHHH--HHHHhc--cCCCH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 33667777666 776555 23543 56655544333221 2334445554432 345778888876543
Q ss_pred --CCCHHHHHHHHHHhcC-CChhhHHHHHHHHHh---c--------------CCchHHHHHHHHHhhcccCCCHHHHHHH
Q 014507 117 --TGNLSDLLAAWVRFMK-PRRADWLAVLKQLKL---M--------------EHPLYLQVAELALLEESFEANIRDYTKI 176 (423)
Q Consensus 117 --~g~~~~a~~~~~~~~~-p~~~~~~~ll~~~~~---~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 176 (423)
+++++.+.++|++.+. |.. .+..+...|.. . +....|..++......-...+...|...
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4678899999999843 322 22222222222 1 1111222222222211111234456555
Q ss_pred HHHHHcc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 177 IHGYGKK--MQ-----IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 177 i~~~~~~--~~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
+..-... +- .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..+|++.... +.+...+. .
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~ 251 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----Y 251 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----H
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----H
Confidence 5543221 11 345778899988763 346888888888899999999999999999987 33333332 2
Q ss_pred HHHcCChhHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507 250 YVRAGMLDRGEVLLREMDAQE---------V---YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLI 317 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 317 (423)
|+...+.++. ++.+.+.- . ......|...+....+.++.+.|..+|+.. ... ..+...|-...
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHH
Confidence 3332222222 22322210 0 112346777777777888999999999999 321 22444454322
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 318 NAYQM-AGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 318 ~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
..-.. .++.+.|..+|+...+.- |+ ...+...+....+.|+.+.|..+|+++. .....|...++.=...|+
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
Confidence 22222 336999999999988742 33 4455666777778999999999999962 357788888887778899
Q ss_pred HHHHHHHHHHhcc
Q 014507 396 VEEVEHVLREYGL 408 (423)
Q Consensus 396 ~~~A~~~~~~m~~ 408 (423)
.+.+.+++++..+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=3.3e-05 Score=58.77 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233344444444444444444444444433
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=2.8e-05 Score=59.15 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555555555555543322 34445555555555555555555554443
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1.7e-05 Score=60.01 Aligned_cols=108 Identities=13% Similarity=0.053 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL--EPS----DKCVAL 350 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 350 (423)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555555556666666666666555432 22455555666666666666666666666554210 111 445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507 351 ILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA 387 (423)
Q Consensus 351 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 387 (423)
+...+...|++++|.+.+++..+. .|+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 666666666666666666666553 23444444333
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=0.00061 Score=60.66 Aligned_cols=99 Identities=7% Similarity=-0.092 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHH
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM-LDRGEVL 262 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~ 262 (423)
+++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++++.+.. +.+..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 44555555555554333 5555555555555555 2556666666665554 3355555555555555555 3555666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507 263 LREMDAQEVYVGSEVYKALLRGYSM 287 (423)
Q Consensus 263 ~~~m~~~~~~p~~~~~~~li~~~~~ 287 (423)
++++.+..+. |...|+.....+.+
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 6666555444 55555544444333
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.4e-05 Score=69.05 Aligned_cols=165 Identities=9% Similarity=-0.066 Sum_probs=73.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHH
Q 014507 173 YTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQV----TLTVMVVMYSKAGNLKMAEETFEEIKL----LGEPLD-KRS 242 (423)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~ 242 (423)
+..+...|.+.|++++|.+.+..+.+. +-.++.. +.+.+-..+...|+++.|..++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555556666665555554432 1111111 112222222334555555555555432 121222 234
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC-CC-C--HH
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQ--EV--YV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GI-TP-D--AR 311 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p-~--~~ 311 (423)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455555555555555555555554431 11 11 1234555555555555555555555544321 01 11 1 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~ 337 (423)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444455555555555555443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=2.5e-05 Score=60.66 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
.+...+.+.|++++|...|+........ +...|..+..+|.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444444555555555555555444222 44445555555555555555555555554443 223344444555555555
Q ss_pred ChhHHHHHHHHHHh
Q 014507 255 MLDRGEVLLREMDA 268 (423)
Q Consensus 255 ~~~~a~~~~~~m~~ 268 (423)
++++|...|++..+
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=4.7e-05 Score=58.36 Aligned_cols=96 Identities=7% Similarity=-0.096 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINA 319 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 319 (423)
...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...++...... +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444444444444444444444443221 33444444444444555555555554444332 1234445555555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 014507 320 YQMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 320 ~~~~g~~~~a~~~~~~m~ 337 (423)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=7.9e-05 Score=57.74 Aligned_cols=100 Identities=14% Similarity=-0.034 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD----QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY 243 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 243 (423)
.+...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 355667777777777788888888887777653 34 5666677777777777777777777776653 3356667
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 270 (423)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777776643
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=2.9e-05 Score=60.27 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507 209 TVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN 288 (423)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 288 (423)
..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...|++..+.+.. +...+..+..+|...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 334444445555555555555554432 224444444555555555555555555554443322 333444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQ 302 (423)
Q Consensus 289 g~~~~a~~~~~~m~ 302 (423)
|++++|...|+...
T Consensus 100 g~~~~A~~~~~~al 113 (142)
T 2xcb_A 100 GDLDGAESGFYSAR 113 (142)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=3.7e-05 Score=61.29 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
...+..+...+.+.|++++|+..|++..+.... +...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555666666666666666666666665322 55666666666666666666666666666653 2345566666666
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 014507 250 YVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~ 269 (423)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666553
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=6e-05 Score=60.04 Aligned_cols=95 Identities=13% Similarity=-0.052 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 356 (423)
.+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44444444555555555555555444431 1244445555555555555555555555554422 112444555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 014507 357 KENQLNRALEFLIDLER 373 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~ 373 (423)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=2.5e-05 Score=57.25 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=6.3
Q ss_pred HHHcCCHHHHHHHHHHH
Q 014507 215 YSKAGNLKMAEETFEEI 231 (423)
Q Consensus 215 ~~~~g~~~~A~~~~~~m 231 (423)
+...|++++|...|++.
T Consensus 16 ~~~~~~~~~A~~~~~~a 32 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKA 32 (112)
T ss_dssp HHSSCCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33333333333333333
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=0.00014 Score=56.25 Aligned_cols=97 Identities=15% Similarity=-0.028 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 349 (423)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+..+|...|++++|.+.+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555555666666666666655543 333 4455555556666666666666666555431 12345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 350 LILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
.+...+...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666666666554
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.0039 Score=55.47 Aligned_cols=133 Identities=6% Similarity=-0.123 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCC----------chHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC
Q 014507 118 GNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEH----------PLYLQVAELALLEESFEANIRDYTKIIHGYGKKM 184 (423)
Q Consensus 118 g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 184 (423)
...++|++.++.++ .|+. .+|+.=-..+...+. .+.+..+...++... +.+..+|+.-...+.+.+
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 33457899888874 4544 334443223322222 345566666666544 457777877666676767
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 185 --QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 185 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
.+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 488999999999887655 77888877777778887 588899998888876 44777887776666554
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.6e-05 Score=61.39 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHH
Q 014507 208 LTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEV 277 (423)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 277 (423)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444455555555555544433110 001 123444444444445555554444443321 0000 1223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 278 YKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
+..+...+...|++++|.+.+++.... +..+ ....+..+...+...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444444555555555544443321 1000 1223344444444455555555544443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.4e-05 Score=60.69 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DAR 311 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ 311 (423)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555566666666666666655432110 01 124445555555555555555555544321 0000 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
.+..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444445555555555554444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=5.7e-05 Score=56.83 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=57.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 174 TKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34455566666666666666666665332 55666666666666666666666666666653 23455666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 014507 254 GMLDRGEVLLREMDAQ 269 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~ 269 (423)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666543
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=5.4e-05 Score=56.98 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=45.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555442 224445555555555555555555555555543322 34444445555555555
Q ss_pred HHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQ 302 (423)
Q Consensus 291 ~~~a~~~~~~m~ 302 (423)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=0.00014 Score=68.66 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG--------------SEVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
...|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677777778888888888888887776432211 4566666666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 014507 306 ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 365 (423)
+.+...|..+..+|...|++++|...|++..+. .| +...+..+...+.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 225566666666666666666666666666652 33 2345555555555555555443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=2.9e-05 Score=73.76 Aligned_cols=121 Identities=10% Similarity=-0.082 Sum_probs=90.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+...+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 445566788999999999988877433 67888889999999999999999999988874 4467788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALLRG--YSMNGNSEGAQRVFE 299 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 299 (423)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988875432 33344445444 778888999998887
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=0.00013 Score=68.95 Aligned_cols=87 Identities=9% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINA 319 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 319 (423)
..|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+. .| +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44555555555555555555555555554322 4455555555555566666666655555543 22 33445555555
Q ss_pred HHHcCCHHHHH
Q 014507 320 YQMAGQSQKAY 330 (423)
Q Consensus 320 ~~~~g~~~~a~ 330 (423)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=2.7e-05 Score=73.94 Aligned_cols=121 Identities=15% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 290 (423)
+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3445667899999999999998874 446889999999999999999999999999987544 67899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINA--YQMAGQSQKAYTAFQ 334 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 334 (423)
+++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988753 1234455555555 888899999999988
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00037 Score=52.50 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 014507 246 MVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 246 li~~~~~~~~~~~a~~~~~~m~ 267 (423)
+..++.+.|++++|...|++..
T Consensus 45 lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 45 LGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333334444444444443333
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.93 E-value=0.00059 Score=51.34 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=69.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQ---VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD---KRSYGSMVM 248 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~ 248 (423)
.+...+...|++++|...|+...+.... +. ..+..+...+.+.|++++|...|++..+.. +.+ ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3556677888888888888888776432 22 466777888888888888888888887754 223 566777778
Q ss_pred HHHHcCChhHHHHHHHHHHhCC
Q 014507 249 AYVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 249 ~~~~~~~~~~a~~~~~~m~~~~ 270 (423)
++...|++++|...|+++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888877653
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00019 Score=65.61 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
.+..+...+.+.|++++|...|++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355556666677777777777766654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00016 Score=66.07 Aligned_cols=138 Identities=12% Similarity=-0.016 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
..+..+...+.+.|++++|.+.|++..+.- .... .....+++. +.. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~--------~~~~~~~~~-------~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR--------AAAEDADGA-------KLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH--------HHSCHHHHG-------GGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc--------cccChHHHH-------HHH-HHHHHHHHHHHHHH
Confidence 346777888889999999999998887630 0000 000011100 000 11233444455555
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY 330 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 330 (423)
.+.|++++|...+++..+.... +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543322 34455555555555555555555555544431 113444444445555444444443
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.87 E-value=0.00022 Score=56.58 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.|..+..+|.+.|++++|...++...... +.+...|..+..+|...|++++|...|+...+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44555555555555555555555554432 22444555555555555555555555555544
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=0.00011 Score=69.48 Aligned_cols=127 Identities=7% Similarity=-0.054 Sum_probs=87.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 014507 284 GYSMNGNSEGAQRVFEAIQFA---GITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKCVA 349 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~ 349 (423)
.+...|++++|+.++++..+. -+-| ...+++.+..+|...|++++|..++++..+ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1112 245688888888888888888888887654 22 2343 45688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507 350 LILSACEKENQLNRALEFLIDLERD-----G--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE 410 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (423)
.|...|...|++++|+.++++..+- | .+....+.+.+-.++...|.+++|+.+|+++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888876532 2 11224455667777778888888888888887643
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=5.7e-05 Score=56.35 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=41.0
Q ss_pred cCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507 253 AGMLDRGEVLLREMDAQEV--YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY 330 (423)
Q Consensus 253 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 330 (423)
.|++++|...|++..+.+. +-+...+..+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555421 1123445555555555555555555555555432 123445555555555555555555
Q ss_pred HHHHHHHH
Q 014507 331 TAFQNMRK 338 (423)
Q Consensus 331 ~~~~~m~~ 338 (423)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=4.9e-05 Score=56.70 Aligned_cols=84 Identities=14% Similarity=-0.033 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 014507 184 MQIQNAENTLLAMKRRG--FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEV 261 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 261 (423)
|++++|+..|++..+.+ -+-+...+..+...|...|++++|...|++..+.. +-+..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555554432 11123344445555555555555555555554443 2234444455555555555555555
Q ss_pred HHHHHHh
Q 014507 262 LLREMDA 268 (423)
Q Consensus 262 ~~~~m~~ 268 (423)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00033 Score=55.52 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA 304 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (423)
..|..+..+|.+.|++++|...+++..+.+.. +...|..+..+|...|++++|...|+.....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45666666666666666666666666665432 5566666666677777777777776666653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00015 Score=65.49 Aligned_cols=146 Identities=12% Similarity=0.004 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
..+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 456677788888899999999888877652 23221 112233333322221 13677777888
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHHcCCHHH
Q 014507 251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINA-YQMAGQSQK 328 (423)
Q Consensus 251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~~~~ 328 (423)
.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888775432 6778888888888888888888888887653 34 34444444444 234566777
Q ss_pred HHHHHHHHHH
Q 014507 329 AYTAFQNMRK 338 (423)
Q Consensus 329 a~~~~~~m~~ 338 (423)
+.+.|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7778887765
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=4.3e-05 Score=56.02 Aligned_cols=93 Identities=13% Similarity=-0.025 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-------HHH
Q 014507 310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-------KEA 382 (423)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 382 (423)
...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4455556666666666666666666665532 224556666666666667777777766666653 232 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 014507 383 SCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
+..+..++...|+.++|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 45555555555555555544443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.0041 Score=60.15 Aligned_cols=171 Identities=6% Similarity=-0.122 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507 184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN----------LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA 253 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 253 (423)
..-++|++.++++.+.... +...|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3346778888888877544 56667666555655555 788888888888765 34677777777777777
Q ss_pred C--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 014507 254 G--MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG-NSEGAQRVFEAIQFAGITPDARMCALLINAYQMA------- 323 (423)
Q Consensus 254 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------- 323 (423)
+ +++++.+.++++.+.+.. +..+|+.-...+.+.| ..+++.+.++++.+.. .-+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 7 568888888888887665 7777777777777777 7788888887777653 33677777776666553
Q ss_pred -------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 014507 324 -------GQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQ 360 (423)
Q Consensus 324 -------g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 360 (423)
+.++++++.+++.... .| |...|..+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 4467777777777663 34 45666666656655554
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0017 Score=49.95 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 014507 324 GQSQKAYTAFQNMR 337 (423)
Q Consensus 324 g~~~~a~~~~~~m~ 337 (423)
+++++|.++|++..
T Consensus 111 ~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 111 KNEKQAVKTFEKAC 124 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 33333333333333
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00074 Score=51.96 Aligned_cols=111 Identities=10% Similarity=-0.048 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHH
Q 014507 184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRG 259 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a 259 (423)
+++++|.+.|++..+.|. |+.. +...|...+..++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777777777777762 2332 5566666666777777777777754 56677777777776 6777788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 014507 260 EVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 305 (423)
...|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777765 45567777777777 777888888887777665
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.001 Score=52.00 Aligned_cols=96 Identities=7% Similarity=-0.105 Sum_probs=54.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC------DQ-----VTLTVMVVMYSKAGNLKMAEETFEEIKLL-----G 235 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 235 (423)
.+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455666777778888888777776653221 12 25666666666666666666666666553 0
Q ss_pred CCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHH
Q 014507 236 EPLD-KRSY----GSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 236 ~~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
+.|+ ...| .....++...|++++|+..|++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 1222 2344 455555555555555555555543
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00018 Score=64.91 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507 205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG 284 (423)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 284 (423)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 345667788888999999999999998765 344332 12223333333222 1 1378889999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHH
Q 014507 285 YSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSA-CEKENQLN 362 (423)
Q Consensus 285 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~~ 362 (423)
|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+ +.|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753 34788999999999999999999999999876 3454 3444444444 23456677
Q ss_pred HHHHHHHHHHHC
Q 014507 363 RALEFLIDLERD 374 (423)
Q Consensus 363 ~a~~~~~~m~~~ 374 (423)
.+...|++|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888899888764
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00039 Score=65.82 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 312 MCALLINAYQMAGQSQKAYTAFQNMRK-----AGL-EPS-DKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 312 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
+++.|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...+.+++|+.+++++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444332 121 122 22233333444445555555555555443
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.63 E-value=0.003 Score=49.35 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhC-----
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-L-----DK-----RSYGSMVMAYVRAGMLDRGEVLLREMDAQ----- 269 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 269 (423)
..+......+.+.|++++|...|++..+.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777888888888888888774311 0 12 25555555666666666666665555543
Q ss_pred CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHH
Q 014507 270 EVYV-GSEVY----KALLRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 270 ~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m 301 (423)
.+.| +...| .....++...|++++|+..|++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 0022 22333 44444444455555555554444
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.57 E-value=0.0078 Score=58.19 Aligned_cols=174 Identities=8% Similarity=-0.141 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507 220 NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM----------LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 289 (423)
..++|++.++++.+.. +-+..+|+.--.++...|+ ++++.+.++++.+...+ +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3578899999999875 3356778777777777776 89999999999998766 7888998888889999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------
Q 014507 290 --NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE-------- 358 (423)
Q Consensus 290 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 358 (423)
+++++++.++++.+.. +-+...|+.-.-++.+.| .++++++.++++.+.. .-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999864 448899999888888889 8999999999998754 33678888877777663
Q ss_pred ------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 014507 359 ------NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEE 398 (423)
Q Consensus 359 ------g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 398 (423)
+.++++.+.+++..... +-|...|.-+-..+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788999998888752 3467778877777777776443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00013 Score=53.37 Aligned_cols=90 Identities=10% Similarity=-0.050 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-------KR 241 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~ 241 (423)
+...+..+...+...|++++|.+.|++..+.... +...|..+..++.+.|++++|...|++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3445666667777777777777777777665332 56667777777777777777777777776643 33 34
Q ss_pred HHHHHHHHHHHcCChhHHHH
Q 014507 242 SYGSMVMAYVRAGMLDRGEV 261 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~ 261 (423)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 44455555555555544443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.0022 Score=44.60 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
..+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44555555666666666666666666554322 45555566666666666666666666665543 22344444444444
Q ss_pred H
Q 014507 251 V 251 (423)
Q Consensus 251 ~ 251 (423)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.0015 Score=48.10 Aligned_cols=78 Identities=17% Similarity=-0.011 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+...|++..+.... +...+..+...|...|++++|...|++..... +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443222 34445555555555555555555555544432 12344455555555555555555555555443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.0013 Score=48.41 Aligned_cols=80 Identities=11% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
.|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788777653 3478889999999999999999999999998753 2357788899999999999999999999887
Q ss_pred HC
Q 014507 373 RD 374 (423)
Q Consensus 373 ~~ 374 (423)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0022 Score=44.52 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344455555555566666666555555442 224445555555555555555555555555443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0027 Score=45.49 Aligned_cols=64 Identities=9% Similarity=-0.100 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666777777777777777777777666433 455666777777777777777777776654
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.003 Score=45.23 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 309 DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
+...+..+..+|...|++++|.+.|++..+.. +-+...|..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555555554422 1123345555555555555555555555443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.0019 Score=50.38 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=49.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL----------KMAEETFEEIKLLGEPLDKRSYGSMVMAYV 251 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 251 (423)
+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++..+.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 344566666666666665433 566666666666665543 36666666666653 224556666666666
Q ss_pred HcC-----------ChhHHHHHHHHHHh
Q 014507 252 RAG-----------MLDRGEVLLREMDA 268 (423)
Q Consensus 252 ~~~-----------~~~~a~~~~~~m~~ 268 (423)
..| ++++|.+.|++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 543 55555555555555
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.016 Score=58.63 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=98.1
Q ss_pred HHHHccCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507 178 HGYGKKMQIQNAEN-TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 178 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 256 (423)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.++-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677877766 442211 12233777777788888888876653211 112334567888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
+.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888775433 2567888888888888888888888887763 234555566677777766666555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507 337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372 (423)
Q Consensus 337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 372 (423)
...|. ++....++.+.|++++|++++.++.
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 55442 3344445666777777777776543
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.0022 Score=50.06 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=46.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh----------HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD----------RGEVLLREMDAQEVYVGSEVYKALLRGY 285 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~p~~~~~~~li~~~ 285 (423)
.+.+.+++|.+.+++..+.. +.+...|+.+..++...++++ +|+..|++..+.+.. +..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34566788888888888765 447788888888887776654 555555555554333 445555555555
Q ss_pred HhC
Q 014507 286 SMN 288 (423)
Q Consensus 286 ~~~ 288 (423)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.04 Score=49.39 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507 274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV 348 (423)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 348 (423)
+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++... +.|...||
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 55566665555555566666666666666653 5655665666666666777777666666655 34555554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.74 E-value=0.042 Score=49.21 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 014507 308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEAS 383 (423)
Q Consensus 308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 383 (423)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 355555555555555566666666666665543 5555555555555566666666666665555 24544444
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.02 Score=53.22 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=66.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAG---ITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKC 347 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~ 347 (423)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++..+ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888888776521 112 245788888888888888888888887754 22 2343 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 348 VALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 348 ~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888988888888887653
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0091 Score=55.47 Aligned_cols=87 Identities=8% Similarity=-0.151 Sum_probs=64.2
Q ss_pred hCCCHHHHHHHHHHHHH---CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 014507 287 MNGNSEGAQRVFEAIQF---AGITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKCVALIL 352 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~---~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li 352 (423)
..|++++|+.++++..+ .-+-| ...+++.+..+|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888887654 11122 246788888999999999999998888764 22 2344 45788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 014507 353 SACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~m~~ 373 (423)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999988887654
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.14 Score=51.75 Aligned_cols=153 Identities=17% Similarity=0.077 Sum_probs=96.3
Q ss_pred HHHhcCCchHHHH-HHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 144 QLKLMEHPLYLQV-AELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK 222 (423)
Q Consensus 144 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 222 (423)
.....++++.|.. +.. .+ ++......++..+.+.|..+.|.++.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~-----~i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP-----NV-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGG-----GC-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHh-----cC-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345677777654 321 11 213334788888889999999987763211 1133456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999886543 4778999999999999999999999987754 3445555666777766655555444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 303 FAGITPDARMCALLINAYQMAGQSQKAYTAFQN 335 (423)
Q Consensus 303 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 335 (423)
..|- ++....+|.+.|++++|.+++.+
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 12233334445555555555443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.013 Score=54.44 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHHHH---CCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCc-CHHHHHHHH
Q 014507 322 MAGQSQKAYTAFQNMRK---AGLE---PS-DKCVALILSACEKENQLNRALEFLIDLERD-----G-FMV-GKEASCTLA 387 (423)
Q Consensus 322 ~~g~~~~a~~~~~~m~~---~~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~-~~~~~~~l~ 387 (423)
..|++++|+.++++..+ .-+. |+ ..+++.|..+|...|++++|..++++..+- | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999988765 2222 33 468999999999999999999999987642 2 123 356689999
Q ss_pred HHHHHcCCHHHHHHHHHHhc
Q 014507 388 AWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~ 407 (423)
..|...|++++|..++++-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998653
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.021 Score=53.01 Aligned_cols=92 Identities=13% Similarity=0.014 Sum_probs=72.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCc-CHH
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRKA---GLEPS----DKCVALILSACEKENQLNRALEFLIDLERD-----G-FMV-GKE 381 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~-~~~ 381 (423)
.+..+.+.|++++|.+++++..+. -+.|+ ..+++.+..+|...|++++|+.++++..+- | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999998752 12232 468899999999999999999999987642 2 122 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 382 ASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+++.|...|...|++++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68899999999999999999998654
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.19 Score=39.77 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=95.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ 327 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 327 (423)
......|+++.|.++.+++ -+...|..|.....+.|+++-|++.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999998776 3788999999999999999999999998873 245555667788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
+..++-+.....|- ++.....+.-.|+++++.+++.+. |--|.. .......|-.+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 87776666655541 455666677889999999998553 332311 112234788999999998863
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.12 E-value=0.04 Score=38.73 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 180 YGKKMQIQNAENTLLAMKRRGFICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
+.+.|++++|...+++..+.... +.. .|..+...|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444333211 233 334444444444444444444444433
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.89 E-value=0.1 Score=36.59 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKR-SYGSMVMAYVRAGMLDRGEVLLREMDAQE 270 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 270 (423)
...+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556666666666666666543 22445 56666666666666666666666666543
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.63 E-value=0.47 Score=35.45 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507 218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297 (423)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (423)
.|..++..++..+.... .+..-||-+|.-....-+-+...++++..-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45556666666555543 23444555554444444444444444444331 111 223344433333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 298 FEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM 377 (423)
Q Consensus 298 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (423)
+-.+- .+...++..+..+...|.-+.-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33222 2445556666677777777777777776543 23566666777777777777777777777777776653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.55 E-value=0.11 Score=36.32 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=7.1
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m 301 (423)
..+.+.|++++|...|+.+
T Consensus 51 ~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 51 NDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.40 E-value=0.17 Score=35.40 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
.++|..++++..+.... +......+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35555555555544322 4444444455555555555555555555543
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.26 E-value=0.26 Score=35.20 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 014507 210 VMVVMYSKAGNLKMAEETFEEI 231 (423)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m 231 (423)
.+...+.+.|+++.|..+|+..
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHH
Confidence 3344444444444444444433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.12 E-value=0.13 Score=39.68 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=8.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 014507 318 NAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 318 ~~~~~~g~~~~a~~~~~~m~~ 338 (423)
-+|.+.|++++|.+.++.+.+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHh
Confidence 333444444444444444443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.11 E-value=0.36 Score=37.12 Aligned_cols=81 Identities=21% Similarity=0.158 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 014507 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYV--GSEVYKALLRGYSMNGNSEGAQ 295 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 295 (423)
...+.+-|.+..+.| .++..+.-.+..++++.+ +.+++..++++..+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 334445555444444 245555555555555555 4445555665555543 12 2333444444556666666666
Q ss_pred HHHHHHHH
Q 014507 296 RVFEAIQF 303 (423)
Q Consensus 296 ~~~~~m~~ 303 (423)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.04 E-value=0.35 Score=34.45 Aligned_cols=67 Identities=13% Similarity=-0.019 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG------FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
.+...+-.+...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|..++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455667778888889999999998888876541 1235667888888888899999999888888775
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.87 E-value=0.86 Score=34.07 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=90.5
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
-.|..++..++..+..+.. +..-||-+|--....-+-+-..++++.+-+. .|. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3466666666666655531 3444555554444444555555555444431 111 12344444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507 332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411 (423)
Q Consensus 332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (423)
.+-.+ ..+...+...+......|+-++..+++..+... -+|+++..-.+..+|.+.|+..+|.+++++--++|+
T Consensus 83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43332 234456778888999999999999999996553 578999999999999999999999999999888776
Q ss_pred c
Q 014507 412 Y 412 (423)
Q Consensus 412 ~ 412 (423)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.64 E-value=2.1 Score=33.77 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=96.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
.....+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556889999999998765 4788999999999999999999999987765 44566667778998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL 371 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 371 (423)
++..++-+.....| -++.....+.-.|+++++.++|.+. |-.|-.. -.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 88887777666554 1355566677889999999998654 3223221 1122356677888887765
Q ss_pred H
Q 014507 372 E 372 (423)
Q Consensus 372 ~ 372 (423)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 3
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.24 E-value=0.94 Score=39.00 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCH
Q 014507 221 LKMAEETFEEIKLLGEPLD---KRSYGSMVMAYVRA-----GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN-GNS 291 (423)
Q Consensus 221 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 291 (423)
...|...+++..+. .|+ -..|+.|...|.+. |+.++|.+.|++..+.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666664 455 45677777777774 78888888888877754322356666777777774 778
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 014507 292 EGAQRVFEAIQFAGIT--PDARMCAL 315 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~--p~~~~~~~ 315 (423)
+++.+.+++....... |+....|.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888777765444 55443333
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.23 E-value=0.55 Score=34.74 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 014507 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK---AYTAFQNMRKAGLEP--SDKCVALILSACEKENQLNRAL 365 (423)
Q Consensus 291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 365 (423)
...+.+-|......| .++..+--.+.-++.+..+... +..++++..+.+ .| .....-.|.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444333333 2444444444444444444433 555555554432 12 2233334444555555555555
Q ss_pred HHHHHHHH
Q 014507 366 EFLIDLER 373 (423)
Q Consensus 366 ~~~~~m~~ 373 (423)
+.++.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.15 E-value=1.3 Score=38.12 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCh
Q 014507 186 IQNAENTLLAMKRRGFICD---QVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA-GML 256 (423)
Q Consensus 186 ~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~~~ 256 (423)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777777777776 344 56888999999994 99999999999999875322477888888888884 999
Q ss_pred hHHHHHHHHHHhCCCC--CCHHHHHHH
Q 014507 257 DRGEVLLREMDAQEVY--VGSEVYKAL 281 (423)
Q Consensus 257 ~~a~~~~~~m~~~~~~--p~~~~~~~l 281 (423)
+.+.+.+++....... |+....+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998776 775554443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.63 Score=46.10 Aligned_cols=55 Identities=11% Similarity=-0.068 Sum_probs=40.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507 352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (423)
..-|...|+++.|.++-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455677888888888877764 23356778888888888888888888888775
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.05 E-value=1.8 Score=39.43 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPSDKC 347 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 347 (423)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456667777788888887777776542 33667788888888888888888888777643 477777655
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.69 E-value=0.82 Score=33.81 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=10.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444555555555444444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.57 E-value=2 Score=32.83 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507 254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305 (423)
Q Consensus 254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 305 (423)
+|+++|.++|+.+.+.+-.. ...|-...+.-.+.|++.+|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44555555555554332222 4444444444555555555555555555443
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.38 E-value=8.4 Score=37.30 Aligned_cols=342 Identities=7% Similarity=-0.018 Sum_probs=155.4
Q ss_pred hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhhh-hH-HHHHHHHhccCCCCCHHHH
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKR-CK-AFVKQIICVSPETGNLSDL 123 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~ll~~~~~~g~~~~a 123 (423)
.++|+++.+..+ ...+...-+. +...|-.+...+.......+..++.+-+.. -. ..-+..+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l--~~~l~~~pL~---~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQM--MPGLKDYPLY---PYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHH--SGGGTTSTTH---HHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHH--HHhhcCCCcH---HHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 667777777665 3333222222 223444444433322234444444443331 11 1223344555567788888
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH--HHHHHHHHHHcC-
Q 014507 124 LAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQN--AENTLLAMKRRG- 200 (423)
Q Consensus 124 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~g- 200 (423)
+.++.. ...+...-.....+....|+...+......+-..| ......++.++..+.+.|.+.. ...=++.+...|
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~ 169 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN 169 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Confidence 876655 33344444556667777787666655444444444 2344566677777776654432 222223333322
Q ss_pred ----------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHH
Q 014507 201 ----------FICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS---YGSMVMAYVRAGMLDRGEVLLREM 266 (423)
Q Consensus 201 ----------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m 266 (423)
+.++... ...++..+.+ ...+..... . +.++... +...+.-+.+ .+.+.|...+...
T Consensus 170 ~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 170 TGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhh
Confidence 1111111 1111111111 111111110 0 1222221 1112222222 3667777777766
Q ss_pred HhCCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 267 DAQEVYVGSEVY----KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 267 ~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
.+.... +.... ..+.......+...++...+...... .++.....-.+....+.|+++.|...|+.|......
T Consensus 241 ~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~ 317 (618)
T 1qsa_A 241 AQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE 317 (618)
T ss_dssp HHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG
T ss_pred hhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc
Confidence 543321 22222 22222233334233444455444332 233333333334445567777777777776542211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------CCCc-------C-----H----HHHHHHHHHHHHcC
Q 014507 343 PSDKCVALILSACEKENQLNRALEFLIDLERD------------GFMV-------G-----K----EASCTLAAWFKRLG 394 (423)
Q Consensus 343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~~~-------~-----~----~~~~~l~~~~~~~g 394 (423)
...-.-=+.+++...|+.++|..+|+.+.+. |.++ + . ..+ .-+..+...|
T Consensus 318 -~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~L~~~g 395 (618)
T 1qsa_A 318 -KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM-ARVRELMYWN 395 (618)
T ss_dssp -SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH-HHHHHHHHTT
T ss_pred -cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH-HHHHHHHHCC
Confidence 2222233445566677777777777665421 2111 0 0 111 2344567788
Q ss_pred CHHHHHHHHHHhcc
Q 014507 395 VVEEVEHVLREYGL 408 (423)
Q Consensus 395 ~~~~A~~~~~~m~~ 408 (423)
....|...+..+.+
T Consensus 396 ~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 396 LDNTARSEWANLVK 409 (618)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHh
Confidence 88888877776654
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.87 E-value=1.3 Score=33.75 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS 353 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 353 (423)
+++++|.++|+.+.+.+ +--...|-...+--.++|+..+|.+++......+-+|. ..+...+.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 56667777777665432 22256666666666677777777777777776554433 33344333
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.80 E-value=1.9 Score=30.22 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++-.+.+ ......+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666677777778888888888888888888888888888877665 2233455666654
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.30 E-value=1.9 Score=33.49 Aligned_cols=128 Identities=8% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 269 QEVYVGSEVY--KALLRGYSMNGNSEGAQRVFEAIQFA-GITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 269 ~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
.|..|....+ -.-+..+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444444333 33356666777777777766664431 11233 12445556677777777777777777543
Q ss_pred C-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 339 A-GLEPSDK-CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 339 ~-~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
. ..-+... +...+ ........ ......+.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 92 ~~k~l~k~~s~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1112111 11111 00000000 0112234455556899999999999999999987654
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.15 E-value=7.3 Score=41.01 Aligned_cols=186 Identities=10% Similarity=0.010 Sum_probs=118.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCC--------------
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVY-------------- 272 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-------------- 272 (423)
++..+...+..+.|.++..- .+.+...--.+..+|...|++++|...|++.... +..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555543322 2335555556777888999999999999875321 000
Q ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507 273 ----VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 273 ----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 344 (423)
.-..-|..++..+-+.+.++.+.++-....+..-.-+ ...|..+.+++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 0123477888899999999999888776655321112 125888999999999999999999888765443
Q ss_pred HHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 345 DKCVALILSACEKENQL------------NRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEHVL 403 (423)
Q Consensus 345 ~~~~~~li~~~~~~g~~------------~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (423)
...+..|+..++..|.. +++.+++....+. .....+.-|..|-..+...|++..|-.++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 46677788877766554 3444444432221 11222345676777777788887766654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.03 E-value=1.2 Score=40.61 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-----DGFMVGKEASCTLA 387 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~l~ 387 (423)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4567788889999999999999887643 45788999999999999999999999998754 39999988755443
Q ss_pred HHH
Q 014507 388 AWF 390 (423)
Q Consensus 388 ~~~ 390 (423)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.53 E-value=9.8 Score=38.65 Aligned_cols=150 Identities=10% Similarity=0.037 Sum_probs=80.1
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHH---HHHHHHHHc
Q 014507 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYK--ALLRGYSMNGNSEGAQRVFEAIQFAGITPDA-RMCA---LLINAYQMA 323 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~---~li~~~~~~ 323 (423)
+...|+.+....++..+.+.. +..+.. .+.-++...|+.+.+..+.+.+... .+. .-|. ++..+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 345566666666666665532 222333 3333444677778888887777753 222 2232 234456677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHH
Q 014507 324 GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVV-EEVEHV 402 (423)
Q Consensus 324 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 402 (423)
|+.....++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|.++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 77777767777776532 2223333333334444566666666666555543 34444444444444444443 456666
Q ss_pred HHHhc
Q 014507 403 LREYG 407 (423)
Q Consensus 403 ~~~m~ 407 (423)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66664
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.41 E-value=1.6 Score=43.21 Aligned_cols=124 Identities=10% Similarity=-0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCC-hhHHHHHHHHHHhC------CCCC-CH--
Q 014507 209 TVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRS--YGSMVMAYVRAGM-LDRGEVLLREMDAQ------EVYV-GS-- 275 (423)
Q Consensus 209 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p-~~-- 275 (423)
..++..+...++ .+.|..+|+++.+.. |...+ ...++..+...++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555555 577888888888763 33322 2233333323222 12344444443321 1111 11
Q ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507 276 --------EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNM 336 (423)
Q Consensus 276 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 336 (423)
...+.=...+...|+++-|+++-++.+.. .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11122244566789999999999998875 45 6789999999999999999999988877
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.08 E-value=12 Score=34.67 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----Hc
Q 014507 183 KMQIQNAENTLLAMKRR-----GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV----RA 253 (423)
Q Consensus 183 ~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~ 253 (423)
.|+++.|.+.+-.+.+. +..-+......++..|...|+++...+.+..+....-. .......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36777787777666542 23335666777888888888888887777666543212 1222333443332 22
Q ss_pred CChhHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 014507 254 GMLDRGE--VLLREMDA--QE-VYV---GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GITPD---ARMCALLINAY 320 (423)
Q Consensus 254 ~~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~ 320 (423)
...+... .+.+.... .| +.. .......|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111110 01 101 1123345566666666777766666665532 21111 23455556666
Q ss_pred HHcCCHHHHHHHHHHHH
Q 014507 321 QMAGQSQKAYTAFQNMR 337 (423)
Q Consensus 321 ~~~g~~~~a~~~~~~m~ 337 (423)
...+++.+|..++....
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666666553
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.85 E-value=4 Score=30.37 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA 388 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 388 (423)
.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3455666666667778899999999999999999999999999887765 3344556776654
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.73 E-value=3.5 Score=28.90 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=13.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507 268 AQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAI 301 (423)
Q Consensus 268 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (423)
..++.|++.+..+.+.+|.+.+++..|.++++.+
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.89 E-value=17 Score=33.62 Aligned_cols=259 Identities=11% Similarity=0.064 Sum_probs=160.5
Q ss_pred CCchHHHHHHHHHhh-----cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHH--HHHHHHHHHcCC
Q 014507 149 EHPLYLQVAELALLE-----ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQVTL--TVMVVMYSKAGN 220 (423)
Q Consensus 149 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~--~~li~~~~~~g~ 220 (423)
++++.|...+..+.+ .....+......++..|...++++...+.+..+.+. |..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 566667555444432 234556778889999999999999998888776544 443333221 222333333343
Q ss_pred HHHHH--HHHHHHHH--cC-CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHh
Q 014507 221 LKMAE--ETFEEIKL--LG-EPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--EVYVG---SEVYKALLRGYSM 287 (423)
Q Consensus 221 ~~~A~--~~~~~m~~--~g-~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~ 287 (423)
.+... .+.+.... .| +-.. ......|...+...|++.+|..++.++... |.... ...+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33221 11111111 12 2222 223466888899999999999999998742 33222 3467778899999
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH----HHHHHHHH
Q 014507 288 NGNSEGAQRVFEAIQF----AGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPSDKCV----ALILSACE 356 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~----~~li~~~~ 356 (423)
.+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.+..+. ...-|...+ ..++....
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999998753 222222 245677888888999999999888877542 122233322 23333333
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHHhc
Q 014507 357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL--GVVEEVEHVLREYG 407 (423)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~ 407 (423)
-.+..+.-..++........-++...|..++.+|... .+|+.+.+.|+...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 4444455555555555554456778899999999874 45777777766543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.80 E-value=16 Score=38.37 Aligned_cols=147 Identities=10% Similarity=-0.020 Sum_probs=94.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----------------
Q 014507 245 SMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---------------- 308 (423)
Q Consensus 245 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------------- 308 (423)
.++..+.+.+..+.+.++..... -+....-.+..+|...|++++|.+.|++... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 34455556666666555443322 2444445566778889999999999976431 1110
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 309 -------DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS----DKCVALILSACEKENQLNRALEFLIDLERDGFM 377 (423)
Q Consensus 309 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 377 (423)
-..-|..++..+-+.|.++.+.++-+...+..-.-+ ...|..+.+++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 123367788888888888888888776665321111 12578888888999999999888877765433
Q ss_pred cCHHHHHHHHHHHHHcCCHHHH
Q 014507 378 VGKEASCTLAAWFKRLGVVEEV 399 (423)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A 399 (423)
-......|+..++..|..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 345667777777766665543
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.23 E-value=6.7 Score=27.41 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
.+...|++++|..+.+.+. .||...|-++.. .+.|..+++...+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444555555555444333 455555544433 23444444444444444433
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.78 E-value=6.5 Score=29.26 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507 227 TFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 227 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
-++.+....+.|++......+.+|-+.+|+..|.++|+-.+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444443
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.29 E-value=6.4 Score=27.47 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=22.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340 (423)
Q Consensus 284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 340 (423)
.+...|++++|..+.+.+. .||...|-++.. .+.|..+++...+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444455555544443333 445544444332 24444444444444444433
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.22 E-value=11 Score=28.03 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 307 TPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 307 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
.|+..+--.+.-++.+..+ ..++..++++..+.+-.-....+-.+.-++.+.|+++.|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444443333444444433 234555555555433111234444555566666666666666666655
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.67 E-value=33 Score=33.18 Aligned_cols=253 Identities=8% Similarity=-0.051 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 140 AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG 219 (423)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 219 (423)
.-+..+.+.+++.....++ ...+.+...-.....+....|+-.+|......+-..|-. ....+..++..+.+.|
T Consensus 77 ~~l~~l~~~~~w~~~l~~~-----~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 3444555555555443322 112345555555677777788877777776666655433 4456777888887777
Q ss_pred CHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---------CCCCCHH---HHHHHHHHH
Q 014507 220 NLKM--AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---------EVYVGSE---VYKALLRGY 285 (423)
Q Consensus 220 ~~~~--A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~~---~~~~li~~~ 285 (423)
.+.. ...=++.+...| +...-..++... . .+.....+.+..+.+. .+.++.. .+...+.-+
T Consensus 151 ~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASV 225 (618)
T ss_dssp CSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHH
Confidence 5433 333334444443 121111121111 0 0010000111111111 0122222 122223333
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507 286 SMNGNSEGAQRVFEAIQFAGITPDARMCA----LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL 361 (423)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 361 (423)
.+ .+.+.|...+......+ ..+..... .+.......+...++...+...... .++.....-.+....+.|++
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCH
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCH
Confidence 33 37899999998887543 22333332 2333333445355667777665543 24444444455555678999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
+.|...|+.|..... ....-.--+.+++...|+.++|..+|+++..
T Consensus 302 ~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998866422 2344344577888899999999999998764
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.30 E-value=12 Score=27.80 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=41.8
Q ss_pred ccCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 165 SFEANIRDYTKIIHGYGKKMQ---IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 165 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
+-.|+..+--....++.++.+ ..+++.+++++.+.+..-....+--+.-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555544444445555443 4466777777766543223444555666777788888888777777764
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.96 E-value=0.037 Score=51.12 Aligned_cols=241 Identities=11% Similarity=0.039 Sum_probs=155.5
Q ss_pred eeeeeeccccchHHH-HHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCc
Q 014507 75 FTWIQIGPNITEEQK-QAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHP 151 (423)
Q Consensus 75 ~~~~~l~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~ 151 (423)
.+|..+..+.-.++. ..|..-| ++..|...|..+|....+.|.+++.+..+.-. ...+...=+.|+-+|++.++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 467777665554322 2222222 23356677888999999999999988877544 223344556888999998887
Q ss_pred hHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------------------CCCCHHHHHHH
Q 014507 152 LYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG--------------------FICDQVTLTVM 211 (423)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~l 211 (423)
.+-+.+. ..||..-...+.+-|...|.++.|.-+|..+..-. -.-++.||..+
T Consensus 133 ~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 133 AELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp STTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 7654332 24666666677777777777777776665543210 11266789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
-.+|...+++..|...--.+.-. ..-...++..|-..|.+++...+++.-.... .....+|+-|.-.|++- ++
T Consensus 206 ~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence 99999999988775554444422 1223346677888899999888888776432 24677888888888886 45
Q ss_pred HHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507 292 EGAQRVFEAIQFA-GITP------DARMCALLINAYQMAGQSQKAYT 331 (423)
Q Consensus 292 ~~a~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~a~~ 331 (423)
++..+.++....+ +++. ....|..++-.|.+-.+++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5555554433222 2221 23457888888888888887654
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.76 E-value=11 Score=26.34 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
-..++|..|-+.+...+. ....--+-+..+.+.|++++|..+.+.+. .||...|..|-.. +.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 356777777777776542 22222223455778888988888876654 6888877666543 678878888777
Q ss_pred HHHHHCCC
Q 014507 369 IDLERDGF 376 (423)
Q Consensus 369 ~~m~~~g~ 376 (423)
.++...|-
T Consensus 93 ~~la~sg~ 100 (116)
T 2p58_C 93 NRLARSQD 100 (116)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 77776653
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.09 E-value=55 Score=33.34 Aligned_cols=150 Identities=11% Similarity=0.116 Sum_probs=66.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCC
Q 014507 181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV--MYSKAGNLKMAEETFEEIKLLGEPLDKRSYG---SMVMAYVRAGM 255 (423)
Q Consensus 181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~li~~~~~~~~ 255 (423)
.-.|+-+....++..+.+.. +......+.. ++...|+.+.+..+.+.+.... .| ..-|. ++..+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence 34455555555555554431 2222222222 2334566666666666665431 11 11122 23344555666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 014507 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS-QKAYTAFQ 334 (423)
Q Consensus 256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 334 (423)
.....++++.+.+... .+..-...+.-++...|+.+.+.++++.+...+ .|.+..--.+..+....|.. .++.+++.
T Consensus 576 ~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6555556666655321 122222222333334555555555555444432 23333222333333333332 35555666
Q ss_pred HHH
Q 014507 335 NMR 337 (423)
Q Consensus 335 ~m~ 337 (423)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 655
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.16 E-value=10 Score=26.42 Aligned_cols=80 Identities=15% Similarity=-0.039 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
-..++|..|-+.+...+. ....--+-+..+.+.|++++|..+.+.+. .||...|..|-.. +.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 356777777777776542 22222223455778899999888766553 6888887666543 778888888888
Q ss_pred HHHHHCCC
Q 014507 369 IDLERDGF 376 (423)
Q Consensus 369 ~~m~~~g~ 376 (423)
.++...|-
T Consensus 92 ~~la~sg~ 99 (115)
T 2uwj_G 92 AGLGGSSD 99 (115)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 77777653
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.31 E-value=0.00058 Score=62.70 Aligned_cols=259 Identities=13% Similarity=0.039 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507 120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR 199 (423)
Q Consensus 120 ~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 199 (423)
+++|.+.-++.-.| ..|..|.++..+.++..+|..-+ + -.-|+..|..+|....+.|.+++-.+.+...++.
T Consensus 41 ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsy---I---kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 41 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSY---I---KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp STTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSS---C---CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred cHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHH---H---hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34444333333334 45777777777777777664322 1 1346778889999999999999998888776665
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--------
Q 014507 200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-------- 271 (423)
Q Consensus 200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------- 271 (423)
.- +...=+.|+-+|++.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+....-
T Consensus 113 ~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 113 AR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp CC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred hc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33 4445567899999999876654433 246666677888889999999988888876533210
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507 272 ------------YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA 339 (423)
Q Consensus 272 ------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 339 (423)
.-++.||..+-.+|...+++.-|.-.--.+.- .|| ....++.-|-..|.+++...+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 12445777777777777776665544433332 111 1234566677778888877777766532
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 340 GLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 340 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
. +.....|+-|.-.|++- ++++..+.++....+ .|. ..++++|.+...|.++.-++..-.+
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iNi---pKviracE~ahLW~ElvfLY~~ydE 319 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VNI---PKVLRAAEQAHLWAELVFLYDKYEE 319 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SCC---TTTHHHHTTTTCHHHHHHHHHHHTC
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---ccH---HHHHHHHHHHhhHHHHHHHHhcchh
Confidence 1 45667788887777765 455555555443222 111 3588888889999998888776544
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.85 E-value=18 Score=33.17 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHH--H
Q 014507 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRR--GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL---LGEPLDKRS--Y 243 (423)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~--~ 243 (423)
.+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..|...+.+... .+..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888899999999999999998775 3333456777888999999999999999888764 222232221 1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMDAQ 269 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~~~ 269 (423)
..-...+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234567888888888776553
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.29 E-value=21 Score=26.89 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 014507 307 TPDARMCALLINAYQMAGQS---QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG 379 (423)
Q Consensus 307 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (423)
.|+..+--.+.-++.+..+. .++..++++..+.+-.-.....-.|.-++.+.|+++.|.++.+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 45665555555566666543 456777777766432123445556666788888888888888888773 454
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.26 E-value=9.6 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
....+.|++++|++....-.+..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455677777777777766666433 6666677777777777777777777776664
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.49 E-value=6.6 Score=30.49 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 014507 209 TVMVVMYSKAGNLKMAEETFEEI 231 (423)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m 231 (423)
..+.+++...|++.+|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444444455555555555443
No 264
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=74.64 E-value=17 Score=30.18 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=14.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 378 VGKEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
++.......+..+.+.|+-++|.++|=+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3344444555555555665555555544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.75 E-value=28 Score=31.95 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFA--GITPDARMCALLINAYQMAGQSQKAYTAFQNMRK---AGLEPSDKCVA-- 349 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-- 349 (423)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+|+.+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566777777888888888888777753 2222345666777777777888887777777654 22222221111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507 350 LILSACEKENQLNRALEFLIDLERDGFMVGKEASC 384 (423)
Q Consensus 350 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (423)
.-...+...+++..|...|-+....--..+...+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~ 247 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYE 247 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccchhhHH
Confidence 11112234566777777776665543233333333
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.52 E-value=19 Score=30.51 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=66.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHc
Q 014507 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS----DKCVALILSACEKE 358 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~ 358 (423)
....+.|+++++++....-++.. +-|...=..++..+|-.|+|++|.+-++...+. .|+ ..+|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH--
Confidence 34567788888887777766653 337777777888888888888888887777663 343 234444444311
Q ss_pred CCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHH--HcCCHHHHHHHHHHhc
Q 014507 359 NQLNRALEFLIDLERDGFM-----VGKEASCTLAAWFK--RLGVVEEVEHVLREYG 407 (423)
Q Consensus 359 g~~~~a~~~~~~m~~~g~~-----~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~ 407 (423)
.=.+....+-. ....-...++.+.. ..|+.++|.++-.+..
T Consensus 80 --------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 80 --------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp --------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 11112222211 23334555665554 3588888887766654
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.39 E-value=62 Score=29.20 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 014507 211 MVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.07 E-value=4.8 Score=34.03 Aligned_cols=240 Identities=13% Similarity=0.059 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhcccCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHH
Q 014507 140 AVLKQLKLMEHPLYLQVAELALLEESFEANIR---DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ---VTLTVMVV 213 (423)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~ 213 (423)
+.+...++.|+.+..+.+ ++.|..++.. .-.+.+...+..|+.+-+.. +.+.|..++. ...+. +.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~-L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL----LLRHGADPVLRKKNGATP-FL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCH-HH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHH----HHHcCCCCcccCCCCCCH-HH
Confidence 455666777776655444 4455444322 11234555566777654444 4445554432 22233 33
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH------------HH
Q 014507 214 MYSKAGNLKMAEETFEEIKLLGEPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE------------VY 278 (423)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------~~ 278 (423)
..+..|+.+-+ +.+.+.|..++. ..++.+.. .+..|+.+ +++.+.+.|..++.. .-
T Consensus 78 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVKLL----KLFLSKGADVNECDFYGFTAFME-AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCTTCBCTTCCBHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHHHH----HHHHHcCCCCCccCcccCCHHHH-HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCC
Confidence 34456665544 444445544432 22333333 34556654 344445555544321 01
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 014507 279 KALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKC--VALILS 353 (423)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~ 353 (423)
...+...+..|+.+-+..+++. .|..+ +....+.+. ..+..|......++++.+.+.|..++... -...+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 1334444556666544444432 13333 222233333 33455665555667777777776554321 122344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 014507 354 ACEKENQLNRALEFLIDLERDGFMVGKEA--SCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 354 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
..+..|..+-+..+++. .|..++... -.+.+....+.|..+-+.-+++
T Consensus 225 ~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp HHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 44556666544433331 344443211 1123334455666654444443
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.99 E-value=34 Score=25.71 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=10.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444455555544444444
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.38 E-value=13 Score=30.41 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=15.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFIC 203 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~p 203 (423)
+...++.|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344455666666666666555554433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.08 E-value=55 Score=26.27 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507 323 AGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 323 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (423)
.+...++.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4447788999999988877554 5667777778888899999999999988888777
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.58 E-value=84 Score=27.89 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHHHHH
Q 014507 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ--LNRALEFLIDLERDGFMVGKEASC 384 (423)
Q Consensus 313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~ 384 (423)
.+.++.-|...|+.++|.+.++++......+ ......+..++-+.++ .+....++..+...|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4555566666666666666666654211111 1222333333333222 234555555555555444333333
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.22 E-value=4.7 Score=34.11 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=120.0
Q ss_pred HHHhccCCCCCHHHHHHHHHHhcCCChh---hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHH--HHHHHHHHHcc
Q 014507 109 QIICVSPETGNLSDLLAAWVRFMKPRRA---DWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRD--YTKIIHGYGKK 183 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 183 (423)
..+...++.|+++.+..+++....++.. .-.+.+...+..|+.+.++ .+++.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3445556788888888888877554432 1123455556667765443 3445565544311 12334444566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------------HHHHHH
Q 014507 184 MQIQNAENTLLAMKRRGFICDQ---VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR-------------SYGSMV 247 (423)
Q Consensus 184 ~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------------~~~~li 247 (423)
|+.+-+. .+.+.|..++. ..++. +...+..|+.+-+ +.+.+.|..++.. ..+ .+
T Consensus 83 ~~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L 152 (285)
T 1wdy_A 83 GSVKLLK----LFLSKGADVNECDFYGFTA-FMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGAT-AL 152 (285)
T ss_dssp TCHHHHH----HHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HH
T ss_pred CCHHHHH----HHHHcCCCCCccCcccCCH-HHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCc-HH
Confidence 7765444 44455655432 22333 3344566776544 4444555444321 122 33
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHH
Q 014507 248 MAYVRAGMLDRGEVLLREMDAQEVYVG---SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM--CALLINAYQM 322 (423)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~ 322 (423)
...+..|+.+-+..+++. .|..++ ..-.+. +...+..++.+...++.+.+.+.|..++... -.+.+...+.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 344456665544444432 144332 222223 3334455665556677777788776654321 1233444566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 014507 323 AGQSQKAYTAFQNMRKAGLEPSD---KCVALILSACEKENQLNRALEFLIDLERDGFMVG 379 (423)
Q Consensus 323 ~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 379 (423)
.|+.+-+..+++. .|..++. ...+. +...++.|..+ +.+.+.+.|..++
T Consensus 229 ~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 229 KKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp TTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSC
T ss_pred cCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCC
Confidence 7776654444331 4444432 22222 33334556553 3344444555554
No 274
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=58.34 E-value=23 Score=30.85 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=32.5
Q ss_pred HHHhccCCCCCHHHHHHHHHHhcCCChhh---HHHHHHHHHhcCCchHHHHHHHHHhhcccCC
Q 014507 109 QIICVSPETGNLSDLLAAWVRFMKPRRAD---WLAVLKQLKLMEHPLYLQVAELALLEESFEA 168 (423)
Q Consensus 109 ~ll~~~~~~g~~~~a~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (423)
..+...++.|+++.+..+++.+..|+... -.+-|...+..|+.+-+ +.+++.|..+
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv----~~Ll~~ga~~ 85 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHH----HHHHHcCCch
Confidence 34445567889998888888886665321 11234444566665544 3344555444
No 275
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.22 E-value=36 Score=22.38 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 335 NMRKAGLEPSDKCVALILSACEKEN-QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 335 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
.+.+.|++++..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35556666665443 3444444443 445566677777666555566666666666666554
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.61 E-value=61 Score=28.05 Aligned_cols=210 Identities=10% Similarity=0.103 Sum_probs=106.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHH---HHHH
Q 014507 172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN--LKMAEETFEEIKLLGEPLDKRS---YGSM 246 (423)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~---~~~l 246 (423)
....+|.-|...|+.++|...++++......| .....++......++ -+.+-.++..+.. ++-+.... |..+
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~--~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 81 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKL 81 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGG--GHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcchHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 34678888999999999999999875443332 222334444444444 3456677777764 44444444 3444
Q ss_pred HHHHHHcC-ChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH---HHHHH--C---------C--
Q 014507 247 VMAYVRAG-MLDRGEVLL----REMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVF---EAIQF--A---------G-- 305 (423)
Q Consensus 247 i~~~~~~~-~~~~a~~~~----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~---~~m~~--~---------g-- 305 (423)
+..+-... |...|...+ .++...++-|-.......- +. .-+.+.+.+ +.+.. + |
T Consensus 82 l~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~----~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~ 156 (307)
T 2zu6_B 82 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 156 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTT----TC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCC
T ss_pred HHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHh----cc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCC
Confidence 44333221 233333333 3334444443222111110 00 111111111 11111 0 1
Q ss_pred -CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCc
Q 014507 306 -ITPDA----RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ--LNRALEFLIDLERDGFMV 378 (423)
Q Consensus 306 -~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~ 378 (423)
-..+. ...+.++.-|...|+.++|.+.++++......+ ......+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 157 ~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 157 GGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 01111 235678888999999999999999986321111 2333344444444333 345677777777666655
Q ss_pred CHHHHHHHHHHH
Q 014507 379 GKEASCTLAAWF 390 (423)
Q Consensus 379 ~~~~~~~l~~~~ 390 (423)
.......+.+.+
T Consensus 236 ~~q~~~Gf~~vl 247 (307)
T 2zu6_B 236 VDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444343333
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.52 E-value=1e+02 Score=27.00 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=96.0
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchH----HHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507 106 FVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLY----LQVAELALLEESFEANIRDYTKIIHGYG 181 (423)
Q Consensus 106 ~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~ 181 (423)
.|.++..-|.+.+++++|+++...+ ...+.+.+.... +..+.+...+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566666677788999998877653 112222333322 2333444556777788877777777776
Q ss_pred ccCCHH-HHHHHHHH----HHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 182 KKMQIQ-NAENTLLA----MKRRG--FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 182 ~~~~~~-~a~~~~~~----m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
....-+ .=.++.++ -.+.| ..-|......+...|.+.+++.+|...|- .|-.+....|..++.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 655321 11222222 23333 33477888888899999999999888873 233334467766665555444
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 255 MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 255 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
...++ +. .....+--|.-.+++..|..+++...
T Consensus 182 ~~~e~--------------dl-fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESHTA--------------PL-YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGGGH--------------HH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccH--------------HH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 32211 11 12233344566678888877766554
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.34 E-value=76 Score=25.43 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507 288 NGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 288 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 344 (423)
.+....+.++|..|..+|+-- -+.-|-.....+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455889999999999987754 567788888899999999999999999999888883
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.46 E-value=7.4 Score=31.78 Aligned_cols=54 Identities=13% Similarity=0.008 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 352 LSACEKENQLNRALEFLIDLERDGFMVGKEA--SCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
+...+..|+.+-+..++ +.|..++... -.+.+....+.|+.+-+..+++...+.
T Consensus 181 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 34445566665444443 3344443211 112344456677777766666654443
No 280
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.65 E-value=50 Score=22.83 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCcCHHHHHHH
Q 014507 329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL-----ERDGFMVGKEASCTL 386 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~g~~~~~~~~~~l 386 (423)
|.++.+++..-|+.|+..+..-++..|...+- + +.++.++. ...|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45555566666677777677777776666553 1 23322222 233666666665543
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.92 E-value=86 Score=25.85 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=47.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507 176 IIHGYGKKMQIQNAENTLLAMKRR--GFIC----DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249 (423)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 249 (423)
-++.+....++++|.+++++..+. +.++ +...-...+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466777778888888887776543 2221 111112223333333333344444444422 3455556666677
Q ss_pred HHHcCChhHHHHHHHHHH
Q 014507 250 YVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 250 ~~~~~~~~~a~~~~~~m~ 267 (423)
+.+.|+.+.|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777665543
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.61 E-value=55 Score=24.51 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 335 NMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 335 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34556666654332 2344444445555666677666665555555555555555555554
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.17 E-value=11 Score=32.15 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=8.3
Q ss_pred HHHHhCCCHHHHHHHHHH
Q 014507 283 RGYSMNGNSEGAQRVFEA 300 (423)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~ 300 (423)
...+..|+.+-+.-+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 333445555544444443
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.59 E-value=1.1e+02 Score=26.33 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ--SQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 344 (423)
....++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+.+++..+.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567888899999999999999999721111 22334444555544333 4567788888887776443
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.22 E-value=5.9 Score=32.43 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHHhc
Q 014507 115 PETGNLSDLLAAWVRFM 131 (423)
Q Consensus 115 ~~~g~~~~a~~~~~~~~ 131 (423)
++.|+++.+..+++.+.
T Consensus 17 ~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHcCC
Confidence 34556666655555543
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.87 E-value=80 Score=23.77 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 194 LAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 194 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+.+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 16 ~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34555666643 33444555555555666677777777666555566655555566665554
No 287
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=48.96 E-value=49 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 336 MRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 336 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555554321 2233333334 44566666666555545555554445555555443
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.69 E-value=58 Score=24.03 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555544434444444444444444443
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.60 E-value=9.5 Score=31.81 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhcc
Q 014507 387 AAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
+...++.|+.+-+..++++=..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 4445567888777777765443
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.37 E-value=10 Score=30.03 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=8.3
Q ss_pred HHHHHHHHHCCCCcC
Q 014507 365 LEFLIDLERDGFMVG 379 (423)
Q Consensus 365 ~~~~~~m~~~g~~~~ 379 (423)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555566665554
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.05 E-value=79 Score=23.15 Aligned_cols=64 Identities=11% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ--SQKAYTAFQNMRKAGL 341 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 341 (423)
....++.-|...|+.++|.+.++++..... ........+..++-+.+. .+.+..++..+.+.|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 345666677777777777777777652110 012233333444433321 3455566666665554
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.21 E-value=1e+02 Score=24.25 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507 239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN 318 (423)
Q Consensus 239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 318 (423)
+...-...+.++.+.++.+....+. ++.+ .++..+-...+.++.+.++.+....+. .+.. .++...-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh---CCCHHHHHHHHH
Confidence 4444444455555555433222222 2222 134445555555555555533222222 2222 345555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 319 AYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER 373 (423)
Q Consensus 319 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 373 (423)
++.+.|..+ +...+..+.+ .++...-...+.++.+.+. ..+...+..+.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555555533 3333333332 3455555555556666555 334444444443
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.53 E-value=1.5e+02 Score=25.96 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhCCCCCCHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR----GEVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li 282 (423)
+|.++..-|.+.+++++|.+++..-.. .+.+.|+... +.-+++-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666667788888888887644321 1223344333 233334455566777777777777
Q ss_pred HHHHhCCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 283 RGYSMNGNSE-GAQRVFEAIQ----FAG--ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 283 ~~~~~~g~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
..+.....-+ .=..+.+++. +.| -.-|......+...|.+.+++.+|..-|- .|-.+...+|..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7766655321 1122333332 222 23367777788888899999888877662 23334446776666655
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507 356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL 408 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (423)
...+... .++...-.+++ -|.-.|+...|..+++...+
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 5544321 12222333333 35567888888887776654
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.76 E-value=12 Score=33.27 Aligned_cols=88 Identities=13% Similarity=-0.036 Sum_probs=48.3
Q ss_pred hccCCCCCHHHHHHHHHHhcCCChhh--HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHH
Q 014507 112 CVSPETGNLSDLLAAWVRFMKPRRAD--WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNA 189 (423)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 189 (423)
...+..|+.+.+..+++.+..++... -.+.|...+..|+.+-++. +++.|..++...-.+.+...+..|+.+-+
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCCHHHHHHHcCCHHHH
Confidence 33345678888777777765444321 1233444455566554433 34445444432223345555677888877
Q ss_pred HHHHHHHHHcCCCC
Q 014507 190 ENTLLAMKRRGFIC 203 (423)
Q Consensus 190 ~~~~~~m~~~g~~p 203 (423)
..+++.....|..+
T Consensus 101 ~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 101 VALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHTCCH
T ss_pred HHHHHhccccCCCH
Confidence 77777765555443
No 295
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=45.50 E-value=1.5e+02 Score=25.66 Aligned_cols=169 Identities=16% Similarity=0.034 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH----HHHHHHHHhCCCCCCHHHHHHHH
Q 014507 207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRG----EVLLREMDAQEVYVGSEVYKALL 282 (423)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~~~~p~~~~~~~li 282 (423)
+|.++..-|.+.+++++|.+++..-.. .+.+.|+...| .-+++-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666667777778877777654322 12233443333 33344455567777777777777
Q ss_pred HHHHhCCCHH-HHHHHHHHHH----HCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507 283 RGYSMNGNSE-GAQRVFEAIQ----FAGI--TPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC 355 (423)
Q Consensus 283 ~~~~~~g~~~-~a~~~~~~m~----~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 355 (423)
..+.....-+ .-.++++.+. +.|- .-|......+...|.+.|++.+|..-|- .|-.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHH
Confidence 6665543211 1123333332 2221 2367777888888888888888776553 11111345566655554
Q ss_pred HHc---CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507 356 EKE---NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR 409 (423)
Q Consensus 356 ~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (423)
... |...++ +...-.+++ .|.-.|+...|..+|+...++
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 443 332221 111122233 355678888888888876543
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.97 E-value=15 Score=30.57 Aligned_cols=57 Identities=12% Similarity=-0.094 Sum_probs=32.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhhcccCCCHHH-------HHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 014507 142 LKQLKLMEHPLYLQVAELALLEESFEANIRD-------YTKIIHGYG--KKMQIQNAENTLLAMKR 198 (423)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~m~~ 198 (423)
+...++.|+.+..+.+.+.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 3444566777777666666666665555332 233443332 56777777777766543
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.87 E-value=1e+02 Score=23.36 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 014507 259 GEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP 308 (423)
Q Consensus 259 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (423)
...+|..|...|+.. -+..|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555544432 23344444555555555555555555555444444
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.86 E-value=69 Score=24.14 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507 336 MRKAGLEPSDKCVALILSACEKEN-QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV 395 (423)
Q Consensus 336 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 395 (423)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445555543322 2233333333 344455555555555444454444444444544443
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.16 E-value=29 Score=29.43 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHH
Q 014507 116 ETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYL 154 (423)
Q Consensus 116 ~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 154 (423)
..|+.+.+..+++.+..++...-.+.+...+..|+.+.+
T Consensus 40 ~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 40 ADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp HTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 345555555555554333322112233333444444433
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.94 E-value=83 Score=23.50 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=29.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455555443 223344444444445556666666655554445555444445555444
No 301
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.92 E-value=37 Score=26.64 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=10.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC
Q 014507 216 SKAGNLKMAEETFEEIKLLGEPL 238 (423)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~~ 238 (423)
+..|+.+.-.++.+.+.+.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 34444444444444455555433
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.77 E-value=1.1e+02 Score=23.04 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQF 303 (423)
Q Consensus 291 ~~~a~~~~~~m~~ 303 (423)
.-.|.++++.+.+
T Consensus 42 ~~sa~ei~~~l~~ 54 (150)
T 2xig_A 42 HLSPEEITHSIRQ 54 (150)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3334444444433
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.62 E-value=12 Score=29.61 Aligned_cols=13 Identities=0% Similarity=-0.076 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHHH
Q 014507 117 TGNLSDLLAAWVR 129 (423)
Q Consensus 117 ~g~~~~a~~~~~~ 129 (423)
.|+.+.+..++..
T Consensus 15 ~g~~~~v~~ll~~ 27 (201)
T 3hra_A 15 QRDTKKVKEILQD 27 (201)
T ss_dssp TTCHHHHHHHHTC
T ss_pred hccHHHHHHHHHc
Confidence 4455555544443
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.43 E-value=35 Score=27.68 Aligned_cols=179 Identities=10% Similarity=-0.001 Sum_probs=91.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 014507 212 VVMYSKAGNLKMAEETFEEIKLLGEPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV--YKALLRGYS 286 (423)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 286 (423)
+...+..|+.+.+..+++.+.+.|..++. .-.+. +...+..|+.+- ++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 44557889999988888887777655443 22333 344455677654 444445555443211 123344556
Q ss_pred hCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 014507 287 MNGNSEGAQRVFEAIQFAGITP---DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK---CVALILSACEKENQ 360 (423)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~ 360 (423)
..|+.+-+..+++.....++.+ +....+. +...+..|+.+-+.. +.+.|..++.. .-...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQL----LLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHH----HHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 7788877776666543211111 2222222 333345666654444 44444443321 11223444456677
Q ss_pred HHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 014507 361 LNRALEFLIDLERDGFMVGKEA--SCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
.+-+. .+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 163 ~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 65444 4445565553211 1233444456788776666555
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.82 E-value=1.3e+02 Score=23.06 Aligned_cols=52 Identities=8% Similarity=-0.147 Sum_probs=37.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 014507 182 KKMQIQNAENTLLAMKRRGFIC--DQVTLTVMVV-M-----YSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 233 (423)
..|++-+|.++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4488888888888887665455 4556777777 2 3457888888888887765
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.61 E-value=1.3e+02 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.474 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 014507 244 GSMVMAYVRAGMLDRGEVLLREMD 267 (423)
Q Consensus 244 ~~li~~~~~~~~~~~a~~~~~~m~ 267 (423)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444555555555555555543
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.43 E-value=80 Score=23.61 Aligned_cols=58 Identities=7% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 195 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
.+++.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554442 223344444444 4556666666665554445555444445555444
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.10 E-value=86 Score=23.08 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=30.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44556554432 233444444444 455666666666665545555554445555555443
No 309
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=36.94 E-value=1.4e+02 Score=26.62 Aligned_cols=24 Identities=4% Similarity=-0.217 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 014507 138 WLAVLKQLKLMEHPLYLQVAELAL 161 (423)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~ 161 (423)
...++.-|-..++.++|....+.+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 345566666666666665555544
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.38 E-value=1.5e+02 Score=22.88 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 014507 259 GEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP 308 (423)
Q Consensus 259 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (423)
...+|..|...|+-. -+..|......+-..|++.+|.++|+.-.+.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555544432 23344444445555555555555555555544444
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.26 E-value=2.4e+02 Score=24.99 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ--SQKAYTAFQNMRKAGLEPSD 345 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 345 (423)
....++.=|...|+.++|.+.++++....+. .......+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 4577888888889999999999988732111 23334455555544332 45677788888777764433
No 312
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.12 E-value=2.2e+02 Score=24.60 Aligned_cols=141 Identities=12% Similarity=0.030 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHCCCCCCHHHHHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR----VFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l 316 (423)
..|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +.+...+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3566777778888888888887654322 2344555554444 45556667788888888888
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 014507 317 INAYQMAGQSQ-KAYTAFQNMRK----AGL--EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAW 389 (423)
Q Consensus 317 i~~~~~~g~~~-~a~~~~~~m~~----~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 389 (423)
+..+.....-+ .=.++++++.+ .|- .-|+.....+...|.+.|++.+|+..|- .|-.-+...+..++--
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHH
Confidence 87776543211 12344444432 222 2367788888899999999999888774 2222245566655555
Q ss_pred HHHc---CCHHHHH
Q 014507 390 FKRL---GVVEEVE 400 (423)
Q Consensus 390 ~~~~---g~~~~A~ 400 (423)
+.+. |...++-
T Consensus 175 w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 175 WLCQVDDIEDSTVA 188 (312)
T ss_dssp HHHHTTCCCHHHHH
T ss_pred HHHhcCCCCcchHH
Confidence 5555 6655543
No 313
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=34.45 E-value=74 Score=24.82 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQV---TLTVMVVMYSK-AGNLKMAEETFEEIKLLGEPLDK 240 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~ 240 (423)
+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++.
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 34555556666666666777777777665432 23333333322 22334445566666666655443
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.08 E-value=3e+02 Score=25.84 Aligned_cols=65 Identities=6% Similarity=-0.005 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCH--HHHH-HHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507 170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGF-ICDQ--VTLT-VMVVMYSKAGNLKMAEETFEEIKLL 234 (423)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 234 (423)
...+|.+++.|...+.++.|..+..+..-.-. .++. ..|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46789999999999999999999998742211 1111 2222 2345566788999999998887654
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.02 E-value=1.5e+02 Score=22.38 Aligned_cols=67 Identities=10% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ--SQKAYTAFQNMRKAGLEPS 344 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 344 (423)
....++.-|...|+.++|.+.++++..... ........+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456778888888999999999999872111 123344445555554322 4567778888877775443
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.66 E-value=2.4e+02 Score=28.94 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=61.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------------
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP----------------- 343 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------------- 343 (423)
++..+...|..+-|.++...+. -+...--.+.++|...|++++|.+.|++... |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4555566666665554332222 2333333566778888999999988876531 2211
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcC
Q 014507 344 ------SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK----EASCTLAAWFKRLG 394 (423)
Q Consensus 344 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~g 394 (423)
...-|..++..+.+.+.++.+.++-+...+.--..|. ..+..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124666777777777777777777777654111222 24555555555443
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.64 E-value=1.9e+02 Score=23.42 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=10.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 014507 213 VMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~ 233 (423)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 344555555555555555543
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.44 E-value=90 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 014507 258 RGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP 308 (423)
Q Consensus 258 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 308 (423)
....+|..|...|+.. -+..|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344444444443321 12233334444444444444444444444333333
No 319
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=33.29 E-value=1.2e+02 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 189 AENTLLAMKRRGFICDQVTLTVMVVMYSKAG 219 (423)
Q Consensus 189 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 219 (423)
|.++.+++..-|+.|+..+..-++..|..-+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444445555555555555554444433
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.25 E-value=1.4e+02 Score=21.76 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCC
Q 014507 243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN--SEGAQRVFEAIQFAGI 306 (423)
Q Consensus 243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 306 (423)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 344555555556666666666555421111 12233333333333321 2345555555554443
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.67 E-value=61 Score=22.34 Aligned_cols=40 Identities=3% Similarity=-0.072 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHH
Q 014507 118 GNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVA 157 (423)
Q Consensus 118 g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 157 (423)
.+.++|.++++........+|..++.++...+....|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 5677888888877777777888888888766766665443
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.32 E-value=35 Score=27.57 Aligned_cols=56 Identities=9% Similarity=-0.020 Sum_probs=29.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 282 LRGYSMNGNSEGAQRVFEAIQFAGITP---------DARMCALLINAYQMAGQSQKAYTAFQNMRK 338 (423)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 338 (423)
+...+..|+.+-+..+++.+.+.|..+ |....+. +...+..|+.+-+..+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 344456666666666666666655422 2222222 3334556677666666555443
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.17 E-value=69 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=21.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334444444444555555555554434444444444444444443
No 324
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.62 E-value=1.9e+02 Score=22.66 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHcCC
Q 014507 204 DQVTLTVMVVMYSKAGN 220 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~ 220 (423)
+..+-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 325
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.41 E-value=4.3e+02 Score=26.84 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507 208 LTVMVVMYSKAGN---LKMAEETFEEIKLLG----EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA 280 (423)
Q Consensus 208 ~~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 280 (423)
-..++...|..|+ .+.|.+.|++....+ +.||... .+...-.+.|..++-..+++...... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3456777788887 457888888877642 5565432 23333446677777777777777653 3445567
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHH
Q 014507 281 LLRGYSMNGNSEGAQRVFEAIQFAG-ITPDARMCALLINAYQMAG-QSQKAYTAFQNMRK---AGLEPSDKCVALILSAC 355 (423)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~ 355 (423)
++.+++...+.+...++++...... +++ .... .++.+...+. ..+.|.+.+.+=-+ ..+......+..++...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRK-QDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888889988888888776533 333 2222 2333333322 23344444433111 11222334566777776
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 014507 356 EKENQLNRALEFLIDLER 373 (423)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~ 373 (423)
...-.-++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 655443443444444443
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.41 E-value=48 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=9.4
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 014507 177 IHGYGKKMQIQNAENTLLA 195 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~ 195 (423)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455555555555543
No 327
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.33 E-value=1.7e+02 Score=22.16 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507 329 AYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (423)
+.++|..|...|+--. ..-|......+...|++.+|.++++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666555333 3445555555556666666666666666555555
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.28 E-value=1e+02 Score=23.19 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 255 (423)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44555554432 223344443333 444566666666555544455554444555555443
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.04 E-value=1.1e+02 Score=24.95 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507 293 GAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343 (423)
Q Consensus 293 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 343 (423)
.+.++|..|..+||-- -...|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555555544322 23334444444445555555555555554444444
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.86 E-value=1.2e+02 Score=23.09 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC
Q 014507 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL--GEPLDKRSYGSMVMAYVRAGM 255 (423)
Q Consensus 196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~ 255 (423)
+.+.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445666543 3344555555555666666666666665 444555554445555555554
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.42 E-value=1.2e+02 Score=23.13 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=27.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCC
Q 014507 232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--EVYVGSEVYKALLRGYSMNG 289 (423)
Q Consensus 232 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g 289 (423)
.+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3455554432 233444444445555566666666554 44444444444444444444
No 332
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.13 E-value=1.5e+02 Score=21.15 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKENQLNRALEFL 368 (423)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 368 (423)
.+++|..-+++.... .+|......++..+-.. ++.+.++.+...+ .|+. +.++...+....+.|-+++. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~~--~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGLE--ARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCC--CSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHcCCCCcH-HHH
Confidence 345555555555433 34555555555554443 4555555554443 4552 34566666666676666544 445
Q ss_pred HHHHH
Q 014507 369 IDLER 373 (423)
Q Consensus 369 ~~m~~ 373 (423)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.05 E-value=1.1e+02 Score=19.76 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 014507 224 AEETFEEIKL 233 (423)
Q Consensus 224 A~~~~~~m~~ 233 (423)
+.++++.+.+
T Consensus 36 ~~el~~~l~~ 45 (83)
T 2fu4_A 36 AEDLYKRLID 45 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.83 E-value=2e+02 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHhccCCCCCHHHHHHHHHHhcCCC
Q 014507 108 KQIICVSPETGNLSDLLAAWVRFMKPR 134 (423)
Q Consensus 108 ~~ll~~~~~~g~~~~a~~~~~~~~~p~ 134 (423)
..++.-|...|+.++|.+.+++...|.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 445666666677777777777765553
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.47 E-value=4.6e+02 Score=26.82 Aligned_cols=49 Identities=14% Similarity=-0.021 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 014507 276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA----RMCALLINAYQMAG 324 (423)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 324 (423)
.-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788888999999999988888877753212232 35777777776655
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.06 E-value=66 Score=23.88 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=21.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507 316 LINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360 (423)
Q Consensus 316 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 360 (423)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444444555555555554444455554444555555444
No 337
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.70 E-value=2.5e+02 Score=24.88 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCCCC
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS--EGAQRVFEAIQFAGITPD 309 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~ 309 (423)
.....++.-|...||.++|.+.++++...... .......++......++. +.+-.++..+...|+-+.
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~-~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHF-LPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGG-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 35677888899999999999999888652110 122333334433333332 345566777776655443
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.66 E-value=1.2e+02 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHhC
Q 014507 256 LDRGEVLLREMDAQ 269 (423)
Q Consensus 256 ~~~a~~~~~~m~~~ 269 (423)
.-.|.++++.+.+.
T Consensus 26 ~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 26 FRSAQELHDELRRR 39 (131)
T ss_dssp CEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444433
No 339
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.66 E-value=2e+02 Score=22.19 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 014507 204 DQVTLTVMVVMYSKAGN 220 (423)
Q Consensus 204 ~~~~~~~li~~~~~~g~ 220 (423)
+..+-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 340
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.44 E-value=1.2e+02 Score=19.15 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 014507 348 VALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR 392 (423)
Q Consensus 348 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 392 (423)
++.++..++...-+++++..+.++.+.| ..+...|-.-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666665 3555556555555554
No 341
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.75 E-value=2.2e+02 Score=22.04 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507 292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342 (423)
Q Consensus 292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 342 (423)
+....+++.+.+.|..-|..--...++...+.|.+. ...+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 344455555555555444444444555544443322 23344455555553
No 342
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.42 E-value=2.2e+02 Score=21.87 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507 329 AYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMV 378 (423)
Q Consensus 329 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 378 (423)
+.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4555666665555433 3344555555555666666666666666555555
No 343
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.03 E-value=2.3e+02 Score=21.88 Aligned_cols=19 Identities=21% Similarity=-0.011 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHcCCh
Q 014507 238 LDKRSYGSMVMAYVRAGML 256 (423)
Q Consensus 238 ~~~~~~~~li~~~~~~~~~ 256 (423)
++...-...+.++.+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444555554443
No 344
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.92 E-value=47 Score=26.56 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=11.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 014507 387 AAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~ 405 (423)
+...++.|+.+-+..++++
T Consensus 178 L~~A~~~~~~~~v~~Ll~~ 196 (228)
T 2dzn_A 178 LFHALAEGHGDAAVLLVEK 196 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344566777666666633
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.14 E-value=1.1e+02 Score=22.59 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHc
Q 014507 222 KMAEETFEEIKLL 234 (423)
Q Consensus 222 ~~A~~~~~~m~~~ 234 (423)
-.|.++++.+.+.
T Consensus 30 ~sa~eI~~~l~~~ 42 (139)
T 3mwm_A 30 RSAQELHDMLKHK 42 (139)
T ss_dssp EEHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444333
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.00 E-value=77 Score=27.85 Aligned_cols=64 Identities=9% Similarity=0.116 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCC
Q 014507 242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG-NSEGAQRVFEAIQFAGI 306 (423)
Q Consensus 242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 306 (423)
....++.-|...|+.++|.+.++++...... ...+...+..+.-+.. ..+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 3567888888889999988888877543221 1222333333332221 23445566666765554
No 347
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.62 E-value=2.7e+02 Score=22.24 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHhCCCC
Q 014507 217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM-----LDRGEVLLREMDAQEVY 272 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~ 272 (423)
+-.+.|.|+-++-+|.+.| .|....-..++.+.-..|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4567788888888888877 5555555555555555443 22344444445555543
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.38 E-value=4.1e+02 Score=24.24 Aligned_cols=143 Identities=14% Similarity=0.030 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507 220 NLKMAEETFEEIKLL--------GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291 (423)
Q Consensus 220 ~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 291 (423)
..++...+++..... ++..+......+... -.|+...+..+++.+........ .|..
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~-------------~~~~ 230 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDD-------------SGKR 230 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCT-------------TSCE
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhccccc-------------CCCC
Confidence 345666666666542 344566666666655 46777777777777654221000 0000
Q ss_pred HHHHHHHHHHHHCC-C--CCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----
Q 014507 292 EGAQRVFEAIQFAG-I--TPDARMCALLINAY---QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ----- 360 (423)
Q Consensus 292 ~~a~~~~~~m~~~g-~--~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----- 360 (423)
.--.+.+++..... . ..+...+..+|+++ .+..+.+.|+.++.+|.+.|..|....=..+..+.-..|.
T Consensus 231 ~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a 310 (447)
T 3pvs_A 231 VLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRA 310 (447)
T ss_dssp ECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHH
T ss_pred ccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhH
Confidence 00011111111111 0 11112222344444 3457899999999999999877765555555556555554
Q ss_pred HHHHHHHHHHHHHCCCC
Q 014507 361 LNRALEFLIDLERDGFM 377 (423)
Q Consensus 361 ~~~a~~~~~~m~~~g~~ 377 (423)
...|...++....-|.+
T Consensus 311 ~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 311 MQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 33566666666666753
No 349
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=24.09 E-value=2.8e+02 Score=26.29 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM 223 (423)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 223 (423)
+..--..++..|.+.|-.+.|.++++.+-.+-+. +...+ .-+..|+++|+++.
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 3344444555555555555555555555443222 22233 33344445554443
No 350
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.89 E-value=5.8e+02 Score=25.88 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCh---hHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507 244 GSMVMAYVRAGML---DRGEVLLREMDAQE----VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL 316 (423)
Q Consensus 244 ~~li~~~~~~~~~---~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 316 (423)
..++...|..|+. +.|.+.|++....+ +.||.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3466777777764 45777787766532 456532 22223334557777767777777753 355555678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHH
Q 014507 317 INAYQMAGQSQKAYTAFQNMRKAG-LEPSDKCVALILSACEKEN-QLNRALEFLIDLER---DGFMVGKEASCTLAAWFK 391 (423)
Q Consensus 317 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~---~g~~~~~~~~~~l~~~~~ 391 (423)
+.+++...+.+...++++...... +++.. . ..++.+..... ..+.+.+++.+=-+ ..+..+...+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-A-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-H-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888887766532 44432 2 22334444322 12344444443111 122233344666777666
Q ss_pred HcCCHHHHHHHHHHhc
Q 014507 392 RLGVVEEVEHVLREYG 407 (423)
Q Consensus 392 ~~g~~~~A~~~~~~m~ 407 (423)
..-..++-.+-+++.-
T Consensus 843 ~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 843 RRFSSEFELQQLEQFK 858 (909)
T ss_dssp TTCCSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5444444444444443
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.41 E-value=2.8e+02 Score=22.06 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=26.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507 217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254 (423)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 254 (423)
+-.+.|.|+-++-+|.+.|-.|....-..++.+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45778888888888888886665555555555555444
No 352
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.36 E-value=2.9e+02 Score=22.09 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCC
Q 014507 175 KIIHGYGK---KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-----LKMAEETFEEIKLLGEP 237 (423)
Q Consensus 175 ~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~ 237 (423)
-+|+++.| -++.+.|+-.+-+|.+.| .|.-..-..++.+.-.-|. ...|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35555554 578999999999999999 6655555555555555554 33455566666666644
No 353
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.01 E-value=94 Score=24.81 Aligned_cols=54 Identities=9% Similarity=-0.113 Sum_probs=28.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCc---------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507 352 LSACEKENQLNRALEFLIDLERDGFMV---------GKEASCTLAAWFKRLGVVEEVEHVLREY 406 (423)
Q Consensus 352 i~~~~~~g~~~~a~~~~~~m~~~g~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (423)
+...+..|+.+.+..+++.+.+.|..+ |..-.+ -+...++.|+.+-+..+++.=
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcC
Confidence 334455667666666666666665432 222222 233345567666666665543
No 354
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.38 E-value=1.2e+02 Score=26.13 Aligned_cols=21 Identities=0% Similarity=-0.103 Sum_probs=11.4
Q ss_pred hhhcCchhhHhhhhhcccccccccCCC
Q 014507 46 SRSLRSGPALEAIKAEDMGKTQVKDDT 72 (423)
Q Consensus 46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~ 72 (423)
++.|+++-+ +.+++.|..++.
T Consensus 33 v~~g~~~~V------~~LL~~Gadvn~ 53 (337)
T 4g8k_A 33 VQNEDVDLV------QQLLEGGANVNF 53 (337)
T ss_dssp HHTTCHHHH------HHHHHHTCCTTC
T ss_pred HHcCCHHHH------HHHHHCCCCCCc
Confidence 566664433 344556766653
No 355
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.13 E-value=92 Score=24.01 Aligned_cols=26 Identities=8% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507 277 VYKALLRGYSMNGNSEGAQRVFEAIQ 302 (423)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (423)
....++.-|...|+.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34566777777778888887777776
No 356
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.88 E-value=47 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507 223 MAEETFEEIKLLGEPLDKRSYGSMVMAY 250 (423)
Q Consensus 223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~ 250 (423)
+|.+.|.+|.+..-.+...||.-.|+..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 4444444444332222333444444444
No 357
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.87 E-value=2.9e+02 Score=21.62 Aligned_cols=26 Identities=15% Similarity=-0.097 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507 380 KEASCTLAAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (423)
...|+.+...+...|+.++|...|..
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 34566777777888888888887753
No 358
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.68 E-value=26 Score=29.35 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 014507 387 AAWFKRLGVVEEVEHVLRE 405 (423)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~ 405 (423)
+...++.|+.+-+..+++.
T Consensus 237 L~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 237 LALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHC
Confidence 3444567877766666654
No 359
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.95 E-value=54 Score=26.91 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=13.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC
Q 014507 177 IHGYGKKMQIQNAENTLLAMKRRGFI 202 (423)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~g~~ 202 (423)
+...++.|+.+.+..+++.+.+.|..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 33344556666555555555555443
No 360
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.94 E-value=3.6e+02 Score=25.55 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293 (423)
Q Consensus 241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 293 (423)
.--.-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|+|+|+++.
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 34444555555556666666665555544333 33334 44445555555544
No 361
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.54 E-value=2.3e+02 Score=20.33 Aligned_cols=41 Identities=5% Similarity=-0.066 Sum_probs=18.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507 193 LLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233 (423)
Q Consensus 193 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (423)
|+.+....+.|++..--.-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444433333322233334455556666555555543
No 362
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.48 E-value=2.1e+02 Score=19.50 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 014507 291 SEGAQRVFEAIQ 302 (423)
Q Consensus 291 ~~~a~~~~~~m~ 302 (423)
.++|.++++.+.
T Consensus 53 ~~~ar~Lld~L~ 64 (97)
T 3ygs_P 53 RDQARQLIIDLE 64 (97)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 363
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.42 E-value=1.1e+02 Score=22.28 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=26.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507 175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEE 226 (423)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 226 (423)
-.|...+.+++.+-|+++++...+.| +...|.+++-.|...=++|-+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34555555666666666666665554 45555555555555544444433
No 364
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.29 E-value=4.6e+02 Score=28.02 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507 326 SQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404 (423)
Q Consensus 326 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (423)
.++..+.|.++.+- +.+ |.......+..-...+++..|.+++.++.+.. |+...|..++..+...| |+.-..+.+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 44555666666652 222 22333333334446788888888888888753 67888888887776666 455555555
Q ss_pred Hh
Q 014507 405 EY 406 (423)
Q Consensus 405 ~m 406 (423)
++
T Consensus 1341 ~~ 1342 (1354)
T 3lxu_X 1341 RM 1342 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 44
Done!