Query 014509
Match_columns 423
No_of_seqs 281 out of 1674
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 3.7E-76 8E-81 586.5 38.2 374 39-413 5-406 (406)
2 KOG4711 Predicted membrane pro 100.0 2.4E-49 5.2E-54 407.9 20.2 394 27-421 73-596 (625)
3 PF04632 FUSC: Fusaric acid re 100.0 3.9E-29 8.5E-34 269.1 34.1 211 44-277 1-212 (650)
4 PRK10631 p-hydroxybenzoic acid 100.0 4.1E-28 8.9E-33 255.1 30.0 218 40-278 4-231 (652)
5 TIGR01666 YCCS hypothetical me 100.0 2E-25 4.3E-30 237.9 37.6 285 26-345 363-648 (704)
6 TIGR01667 YCCS_YHJK integral m 100.0 6.4E-26 1.4E-30 242.4 33.7 283 27-343 366-649 (701)
7 PRK11427 multidrug efflux syst 99.9 5E-21 1.1E-25 200.5 30.1 218 39-274 345-564 (683)
8 PRK11427 multidrug efflux syst 99.8 1.7E-17 3.7E-22 174.1 29.4 182 27-226 12-200 (683)
9 COG1289 Predicted membrane pro 99.8 3E-16 6.5E-21 169.5 27.1 181 39-235 349-530 (674)
10 COG4129 Predicted membrane pro 99.7 3.2E-15 6.9E-20 146.1 29.3 164 46-232 11-174 (332)
11 COG1289 Predicted membrane pro 99.7 9.6E-15 2.1E-19 157.8 29.3 216 40-277 6-225 (674)
12 PF10334 DUF2421: Protein of u 99.6 1.6E-14 3.4E-19 135.8 20.0 210 203-417 1-229 (229)
13 PF13515 FUSC_2: Fusaric acid 99.6 4E-15 8.7E-20 126.8 13.3 123 59-199 3-128 (128)
14 PF06081 DUF939: Bacterial pro 99.6 1.3E-14 2.9E-19 125.9 15.7 136 47-203 6-141 (141)
15 PF10337 DUF2422: Protein of u 99.4 2.2E-10 4.8E-15 118.6 31.4 260 39-306 10-314 (459)
16 PF04632 FUSC: Fusaric acid re 99.2 2.5E-08 5.4E-13 107.8 31.2 176 40-226 335-512 (650)
17 PF12805 FUSC-like: FUSC-like 99.1 9E-08 1.9E-12 93.0 25.9 241 102-371 3-252 (284)
18 TIGR01666 YCCS hypothetical me 98.9 1.1E-06 2.5E-11 94.7 29.6 174 43-232 6-179 (704)
19 TIGR01667 YCCS_YHJK integral m 98.9 3E-06 6.6E-11 91.7 29.8 289 43-370 6-307 (701)
20 PRK10631 p-hydroxybenzoic acid 97.9 0.018 3.9E-07 62.0 28.7 164 45-221 353-519 (652)
21 PF11168 DUF2955: Protein of u 96.9 0.057 1.2E-06 46.7 14.7 138 48-202 2-139 (140)
22 COG4129 Predicted membrane pro 88.3 29 0.00063 34.5 18.2 42 93-138 5-46 (332)
23 PF12732 YtxH: YtxH-like prote 86.3 3.3 7.1E-05 31.5 6.5 46 187-233 3-48 (74)
24 PF10011 DUF2254: Predicted me 84.7 22 0.00048 35.9 13.6 69 96-175 45-117 (371)
25 TIGR02865 spore_II_E stage II 83.5 80 0.0017 35.2 24.1 23 212-234 308-330 (764)
26 PF12841 YvrJ: YvrJ protein fa 72.1 11 0.00023 24.9 4.4 31 384-414 6-36 (38)
27 COG5336 Uncharacterized protei 70.1 20 0.00043 29.4 6.4 30 92-121 44-73 (116)
28 COG4980 GvpP Gas vesicle prote 67.7 22 0.00049 29.5 6.5 43 186-229 8-50 (115)
29 PF06081 DUF939: Bacterial pro 67.1 20 0.00044 30.8 6.6 44 73-117 96-140 (141)
30 PF06496 DUF1097: Protein of u 63.1 99 0.0021 26.6 15.3 71 73-145 19-89 (144)
31 PF10031 DUF2273: Small integr 60.7 38 0.00083 23.8 5.7 20 98-117 8-27 (51)
32 PRK10263 DNA translocase FtsK; 59.1 2.7E+02 0.0059 33.0 15.0 15 89-103 66-80 (1355)
33 PRK11677 hypothetical protein; 55.6 45 0.00096 28.6 6.4 46 187-232 8-54 (134)
34 COG5547 Small integral membran 52.2 69 0.0015 23.1 5.8 25 94-118 4-28 (62)
35 TIGR02135 phoU_full phosphate 49.9 1.9E+02 0.0041 25.7 10.6 28 391-418 178-205 (212)
36 PRK09776 putative diguanylate 48.7 2.9E+02 0.0063 31.7 13.9 11 102-112 47-57 (1092)
37 PF04982 HPP: HPP family; Int 46.4 1.7E+02 0.0037 24.3 11.7 60 78-144 7-66 (120)
38 PF00873 ACR_tran: AcrB/AcrD/A 42.4 5.1E+02 0.011 29.9 14.5 46 161-206 438-484 (1021)
39 PF13515 FUSC_2: Fusaric acid 42.1 69 0.0015 26.2 5.6 42 162-206 18-59 (128)
40 PF10225 DUF2215: Uncharacteri 40.9 3.2E+02 0.007 25.9 13.3 122 99-224 12-138 (249)
41 PF04286 DUF445: Protein of un 40.7 22 0.00047 35.2 2.7 21 98-118 344-364 (367)
42 TIGR00930 2a30 K-Cl cotranspor 40.5 5.9E+02 0.013 29.3 14.3 28 87-115 139-166 (953)
43 COG3448 CBS-domain-containing 38.1 82 0.0018 30.8 5.9 45 96-145 80-124 (382)
44 PRK09823 putative inner membra 37.2 2.7E+02 0.0059 23.9 9.3 92 96-202 11-103 (160)
45 PF11744 ALMT: Aluminium activ 33.9 1.6E+02 0.0035 30.2 7.7 40 161-202 44-83 (406)
46 PF06295 DUF1043: Protein of u 33.5 1.6E+02 0.0035 24.8 6.5 38 187-224 4-42 (128)
47 COG2733 Predicted membrane pro 32.7 19 0.00041 36.3 0.7 22 98-119 391-412 (415)
48 PF10112 Halogen_Hydrol: 5-bro 32.4 1.3E+02 0.0029 27.2 6.3 16 331-346 163-178 (199)
49 PF06160 EzrA: Septation ring 31.9 6.6E+02 0.014 26.9 15.7 18 213-230 20-37 (560)
50 COG4980 GvpP Gas vesicle prote 30.8 51 0.0011 27.4 2.9 18 101-118 8-25 (115)
51 TIGR00796 livcs branched-chain 30.5 5.9E+02 0.013 25.8 17.3 77 31-115 201-278 (378)
52 PF03419 Peptidase_U4: Sporula 30.0 1.9E+02 0.0041 28.0 7.3 19 98-116 34-52 (293)
53 COG3275 LytS Putative regulato 30.0 4.6E+02 0.01 27.6 10.0 27 85-111 53-81 (557)
54 PRK15385 magnesium transport p 29.9 2.8E+02 0.0062 25.9 8.0 21 47-67 4-24 (225)
55 PF10779 XhlA: Haemolysin XhlA 27.0 70 0.0015 24.0 2.9 19 99-117 51-69 (71)
56 PF11085 YqhR: Conserved membr 27.0 4.6E+02 0.01 23.5 10.9 25 83-110 52-76 (173)
57 PF10456 BAR_3_WASP_bdg: WASP- 26.2 5.5E+02 0.012 24.2 9.3 41 281-323 172-212 (237)
58 PRK13591 ubiA prenyltransferas 25.0 6.7E+02 0.015 24.7 11.9 22 1-22 1-22 (307)
59 KOG2290 Rhomboid family protei 24.3 4.2E+02 0.0092 27.6 8.5 47 159-206 573-624 (652)
60 PF14351 DUF4401: Domain of un 24.3 6.8E+02 0.015 24.5 11.6 63 47-112 58-121 (326)
61 COG1392 Phosphate transport re 24.2 5.8E+02 0.013 23.7 16.0 30 280-309 75-104 (217)
62 TIGR02135 phoU_full phosphate 23.9 2.3E+02 0.005 25.2 6.3 26 394-419 80-105 (212)
63 PF05478 Prominin: Prominin; 23.7 1.1E+03 0.023 26.6 16.1 40 189-230 153-192 (806)
64 COG0670 Integral membrane prot 23.6 6.2E+02 0.013 23.8 13.4 26 179-204 142-167 (233)
65 COG4956 Integral membrane prot 23.6 6E+02 0.013 25.1 9.1 24 96-119 3-27 (356)
66 PF07907 YibE_F: YibE/F-like p 23.6 3.2E+02 0.0069 25.9 7.3 70 48-118 22-97 (244)
67 PF11992 DUF3488: Domain of un 23.3 7.2E+02 0.016 24.4 14.6 9 75-83 27-35 (325)
68 PRK11412 putative uracil/xanth 23.2 8.4E+02 0.018 25.2 10.8 38 160-202 175-212 (433)
69 COG3105 Uncharacterized protei 22.9 3.6E+02 0.0078 23.0 6.5 35 187-222 13-49 (138)
70 PF11299 DUF3100: Protein of u 21.5 5.2E+02 0.011 24.4 7.9 81 101-201 149-231 (241)
71 TIGR03480 HpnN hopanoid biosyn 21.2 5.3E+02 0.011 29.2 9.7 17 189-205 837-853 (862)
72 PF06160 EzrA: Septation ring 20.7 1E+03 0.023 25.4 11.4 30 387-416 466-495 (560)
73 PTZ00370 STEVOR; Provisional 20.7 3.8E+02 0.0082 26.1 7.0 21 78-98 211-231 (296)
74 COG4291 Predicted membrane pro 20.6 5E+02 0.011 23.9 7.4 18 101-118 24-41 (228)
75 PF09877 DUF2104: Predicted me 20.3 4.7E+02 0.01 21.1 8.4 16 187-202 82-97 (99)
76 PF05433 Rick_17kDa_Anti: Glyc 20.2 53 0.0011 22.1 0.9 13 103-115 2-14 (42)
77 PRK12821 aspartyl/glutamyl-tRN 20.2 9.9E+02 0.022 24.9 12.0 29 87-115 94-122 (477)
78 PRK13629 threonine/serine tran 20.1 3.9E+02 0.0085 27.8 7.6 11 100-110 27-37 (443)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=3.7e-76 Score=586.46 Aligned_cols=374 Identities=49% Similarity=0.812 Sum_probs=350.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 39 KYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 39 ~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~ 118 (423)
++||++++|++|+|+|+++++++++..++|..++.+++||++||++|++|++|+|+.||++|++||++||++|+++.++.
T Consensus 5 ~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la 84 (406)
T PF11744_consen 5 KDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLA 84 (406)
T ss_pred ccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 014509 119 QDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIF 198 (423)
Q Consensus 119 ~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~ 198 (423)
...|+.++++++++.+|+++++++|.|++|.+|+||+||+.++++|+++|.+++|++++.+.+|.+|+..|++|++++++
T Consensus 85 ~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~ 164 (406)
T PF11744_consen 85 SLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLL 164 (406)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc----c-CCCCcchhhhHHHHhhHhhhHhHHhhhccCC
Q 014509 199 ISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEK----E-NRPGFSLSSCKSVLHSKAKDESLANFARWEP 273 (423)
Q Consensus 199 v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~----~-~~~~~~~~~~~~~l~~~~~~~~l~~~a~~Ep 273 (423)
+++++||.|++++||+.++++++++++.++.|+++|++..+++ + ..+++.+++|++++++++++|+|.++|+|||
T Consensus 165 vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP 244 (406)
T PF11744_consen 165 VSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEP 244 (406)
T ss_pred HHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcc
Confidence 9999999999999999999999999999999999999866554 1 1334677899999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHhhccCCCcc
Q 014509 274 WHGKFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEPCEIVGSSLAWALRELGESIKKMNKCETA 353 (423)
Q Consensus 274 ~~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~l~~~~~~~~~ 353 (423)
+||||+++|||++|.|+++.+|+|+|.+++|++|+++++|.|.++|..++++|.+++.|+.++|++|+.++++|+++++.
T Consensus 245 ~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~~~~~~ 324 (406)
T PF11744_consen 245 PHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMTKSSSI 324 (406)
T ss_pred cccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccchhhHHHHHHHHhhhcCccc-----------------------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 354 GLIMPKLKSIRHELNLIITPSA-----------------------LASVEKSTDALELASFVFSLMEMVDKVEELTKEVE 410 (423)
Q Consensus 354 ~~~~~~~~~a~~~L~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ll~~~~~~l~~l~~~v~ 410 (423)
+.++.++++|+|+|+..+.... ....+ +.+.++++||+|||+|+++++|+++|+|+
T Consensus 325 ~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~l~lat~aSlLie~v~r~~~iv~~v~ 403 (406)
T PF11744_consen 325 DDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYE-LLEALPLATFASLLIEFVARLENIVEAVE 403 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchh-HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688999999999998863211 11222 47899999999999999999999999999
Q ss_pred HHh
Q 014509 411 ELG 413 (423)
Q Consensus 411 ~L~ 413 (423)
||+
T Consensus 404 eLa 406 (406)
T PF11744_consen 404 ELA 406 (406)
T ss_pred hhC
Confidence 996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=2.4e-49 Score=407.91 Aligned_cols=394 Identities=42% Similarity=0.676 Sum_probs=344.0
Q ss_pred hHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHH
Q 014509 27 LPIISFVREVDS--KYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGT 104 (423)
Q Consensus 27 ~~~~~~~~~~~~--~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT 104 (423)
.++.++.++.|. ..||++++|++|+++|.+|++.+++..++|..++.+..|+++|+++|+++++|+|+.|+++|.+||
T Consensus 73 ~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~t 152 (625)
T KOG4711|consen 73 AKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGT 152 (625)
T ss_pred HHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHH
Confidence 444455566665 799999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHH
Q 014509 105 ILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARE 184 (423)
Q Consensus 105 ~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~ 184 (423)
+.++.+|+.+.++....|...+++.+++.+|+.+...+|++++|.+|+ |+|+++++.+|++++.+.+++.+..++.|..
T Consensus 153 L~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~ 231 (625)
T KOG4711|consen 153 LSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLELALQ 231 (625)
T ss_pred hhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHHHHHH
Confidence 999999998888887777556788899999999999999999999997 9999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH-------HHHhhhhcc--cc-cc-----C-CCCcc
Q 014509 185 RLTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEG-------CLEEYFKVD--TE-KE-----N-RPGFS 248 (423)
Q Consensus 185 R~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~-------~l~~~~~~~--~~-~~-----~-~~~~~ 248 (423)
|+.+|.+|..++++++.|+||.|++++||+..+++++.++.++++ +...|.... +. .. . ..++.
T Consensus 232 Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~~~~~ 311 (625)
T KOG4711|consen 232 RLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAAWYPL 311 (625)
T ss_pred HHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcchhhh
Confidence 999999999999999999999999999999999999999999995 444443221 00 00 0 13367
Q ss_pred hhhhHHHHhhHhhhHhHHhhhccCCccc-ccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhHHH
Q 014509 249 LSSCKSVLHSKAKDESLANFARWEPWHG-KFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEPCE 327 (423)
Q Consensus 249 ~~~~~~~l~~~~~~~~l~~~a~~Ep~~g-r~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~~~ 327 (423)
+++|+++++++..++.+..+|.|||+|| .++++|||++|.+++..+|+|++.++++|+|+.+..|+|.+++..++++|.
T Consensus 312 ~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~~~l~ 391 (625)
T KOG4711|consen 312 YNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFRLTLR 391 (625)
T ss_pred hcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 7899999999999999999999999999 667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCCcc-ccchhhHHHHHHHHhhhcC------------------------------cc--
Q 014509 328 IVGSSLAWALRELGESIKKMNKCETA-GLIMPKLKSIRHELNLIIT------------------------------PS-- 374 (423)
Q Consensus 328 ~~~~~~~~~L~~La~~l~~~~~~~~~-~~~~~~~~~a~~~L~~~~~------------------------------~~-- 374 (423)
+++.++.+++++++.+++.|+++++. +.+....+.|.++|+..+. |.
T Consensus 392 rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~~~ 471 (625)
T KOG4711|consen 392 RVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEPNLK 471 (625)
T ss_pred HhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccchhhc
Confidence 99999999999999999999999884 5456667777777654220 00
Q ss_pred ---------------------------------------------------------------------cc----c----
Q 014509 375 ---------------------------------------------------------------------AL----A---- 377 (423)
Q Consensus 375 ---------------------------------------------------------------------~~----~---- 377 (423)
++ .
T Consensus 472 ~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~~~~~ 551 (625)
T KOG4711|consen 472 GTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILSRATS 551 (625)
T ss_pred ccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCcccccccccccc
Confidence 00 0
Q ss_pred cccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014509 378 SVEKSTDALELASFVF-SLMEMVDKVEELTKEVEELGGLAGFHAN 421 (423)
Q Consensus 378 ~~~~~~~~~~~~~~~~-ll~~~~~~l~~l~~~v~~L~~~a~f~~~ 421 (423)
...+..+.++.++|++ ++++++++++..+++++||+..|+|++.
T Consensus 552 ~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~ 596 (625)
T KOG4711|consen 552 KSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEY 596 (625)
T ss_pred ccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhccc
Confidence 0011256788999999 9999999999999999999999999964
No 3
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.97 E-value=3.9e-29 Score=269.08 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 014509 44 KLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGG 123 (423)
Q Consensus 44 ~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~ 123 (423)
++.|++|+++|+++++++++..++ ++|+||++||++|+||+.|+++.|+++|++||++|+++|+++..++.+
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l-----~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~--- 72 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQL-----PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQ--- 72 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 478999999999999999998887 999999999999999999999999999999999999999977655542
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 124 IGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGL-RAEEVMQLARERLTTIVMGFVICIFISLL 202 (423)
Q Consensus 124 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~-~~~~~~~~a~~R~~~v~iG~~~a~~v~~~ 202 (423)
+|++..+.+.+|+++|.|+..+.+ ..++|+++++++|.++|.+++. .|++.++++++|+.+|++|++|+.+|+.+
T Consensus 73 --~p~l~~~~lal~i~~c~~~~~~~~--~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 73 --SPLLFLLALALWIGLCLYLSLLDR--NFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777788888888866432 2458999999999999988875 46789999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchhhhHHHHhhHhhhHhHHhhhccCCcccc
Q 014509 203 VFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLSSCKSVLHSKAKDESLANFARWEPWHGK 277 (423)
Q Consensus 203 i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~a~~Ep~~gr 277 (423)
+||.++++.+++.+.+.+++..++++..+++. ..+. . ..+++.++..+++.+..++.+|.+..|
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~----~~~~----~---~~~~l~~~~~~l~~~~~~~~~e~~~~~ 212 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALLDGD----PDPA----A---ERRRLARDIAALESLLSHARYESPRLR 212 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHhCCC----cccc----h---HHHHHHHHHHHHHHHHhhccccCchhH
Confidence 99999999999999999999998887776542 1111 1 234556666889999999999987544
No 4
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.97 E-value=4.1e-28 Score=255.08 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=184.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhc---------ccChhHHHHHHHHHHHHHHHHHHH
Q 014509 40 YDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIF---------EFYAGATLSKGLNRGIGTILGGGL 110 (423)
Q Consensus 40 ~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~---------~p~~G~t~~k~~~Ri~GT~iG~~~ 110 (423)
.++.+++|++|+++|+++++++++..++ ++|+||++||++|+ ||..|+++.|+++|++||++|++.
T Consensus 4 p~~~~~~falk~~lA~~LAL~ia~~l~L-----~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~ 78 (652)
T PRK10631 4 IANQRLRFAVKLAFAIVLALFVGFHFQL-----ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIA 78 (652)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999998887 99999999999999 999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCC-chHHHHHHHHHHHHH
Q 014509 111 GCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLR-AEEVMQLARERLTTI 189 (423)
Q Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~-~~~~~~~a~~R~~~v 189 (423)
|+++...+.+ +|+++.+++.+|+++|+|.....+ .+++|+++++++|.++|++++.. |++.|++|+.|+.+|
T Consensus 79 ~l~l~~~f~~-----~p~l~~l~l~lWig~c~~~s~l~r--~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~Ei 151 (652)
T PRK10631 79 ALVIIIATIR-----APLLMILLCCIWAGFCTWISSLVR--VENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEI 151 (652)
T ss_pred HHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9977665542 467777778888888888765443 34589999999999999988765 678899999999999
Q ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchhhhHHHHhhHhhhHhHHhhh
Q 014509 190 VMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLSSCKSVLHSKAKDESLANFA 269 (423)
Q Consensus 190 ~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~a 269 (423)
++|++|+.+|+.+++|.+.+..++..+.+.+.+..++.+.++.+- +.+ +.-....+++.+...+|.++..+
T Consensus 152 ~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~~----~~~-----~~~~~~~~L~~di~~le~lr~~~ 222 (652)
T PRK10631 152 VIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKHG----DKE-----EVDKAWGDLVRRTTALNGMRSNL 222 (652)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhccC----ccc-----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988888775431 111 11123356677778999999999
Q ss_pred ccCCccccc
Q 014509 270 RWEPWHGKF 278 (423)
Q Consensus 270 ~~Ep~~gr~ 278 (423)
.||.++.|.
T Consensus 223 ~~e~~~~r~ 231 (652)
T PRK10631 223 MMESSRWQR 231 (652)
T ss_pred ccCCcchhh
Confidence 999876653
No 5
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.95 E-value=2e-25 Score=237.91 Aligned_cols=285 Identities=14% Similarity=0.127 Sum_probs=198.5
Q ss_pred hhHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHH
Q 014509 26 FLPIISFVREVDSKYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTI 105 (423)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~ 105 (423)
+...|.-++..+ ..|+..++||+|+++++++++.++.+.++ ++|||+++|+++|++|+.|+|..|+.+|++||+
T Consensus 363 ~~~~~~~l~~~l-~~~S~~fRhAlRlalal~~a~~i~~~l~l-----~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTl 436 (704)
T TIGR01666 363 LKNIWARIFSHF-TFESPLFRHAVRLSIVLFLGYAIIQFFGF-----NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTL 436 (704)
T ss_pred hhHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345666667666 67888999999999999999999987776 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHH
Q 014509 106 LGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARER 185 (423)
Q Consensus 106 iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R 185 (423)
+|+++|.++.++.... ...+ +++.+.+.++.+++ .. .|+..++++|..+++..... ++.++.+..|
T Consensus 437 lG~~lg~~ll~l~p~~-----~~~l-~liv~~~~l~~~~~-----~~--~Y~~a~~fiT~~vll~~~l~-g~~~~~~~~R 502 (704)
T TIGR01666 437 LGVVIGSPLLYFNPSL-----ELQL-VLVVLTGVLFFAFR-----SN--NYSFATFFITLLVLLCFNVL-GEGAAVLLPR 502 (704)
T ss_pred HHHHHHHHHHHHhccH-----HHHH-HHHHHHHHHHHHHH-----HH--hHHHHHHHHHHHHHHHHHcc-cchHHHHHHH
Confidence 9999999887776432 1111 22222222222221 23 44554556777666544432 2467889999
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchh-hhHHHHhhHhhhHh
Q 014509 186 LTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLS-SCKSVLHSKAKDES 264 (423)
Q Consensus 186 ~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 264 (423)
+.+|+||++++++++.++||.|.++++++.+++.++..+++++.+++.+..+..+ +..++ .-|+.-++.+++++
T Consensus 503 l~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~-----~~~yr~aRR~a~~~~a~l~~ 577 (704)
T TIGR01666 503 LLDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSD-----DLKYRIARRNAHNYDAALST 577 (704)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-----hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887432211 12222 23455555677888
Q ss_pred HHhhhccCCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhHHHHHHHHHHHHHHHHHHhH
Q 014509 265 LANFARWEPWHGKFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEPCEIVGSSLAWALRELGESI 344 (423)
Q Consensus 265 l~~~a~~Ep~~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~l 344 (423)
..+.+.-||++.+ -.|+.--++....+.+...+.+|..+-... . ...+...+++....+...|..++...
T Consensus 578 ~~~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~r~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~~~ 647 (704)
T TIGR01666 578 TVSNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAHRDRL---K---NLQQTAQFLDGFYPVAKKLIYTLEHI 647 (704)
T ss_pred HHHHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhCHhhC---C---ChHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8899999998654 235544455555555655566655432111 1 11122223444455566666655554
Q ss_pred h
Q 014509 345 K 345 (423)
Q Consensus 345 ~ 345 (423)
.
T Consensus 648 ~ 648 (704)
T TIGR01666 648 E 648 (704)
T ss_pred c
Confidence 4
No 6
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.95 E-value=6.4e-26 Score=242.44 Aligned_cols=283 Identities=15% Similarity=0.173 Sum_probs=197.9
Q ss_pred hHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHH
Q 014509 27 LPIISFVREVDSKYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTIL 106 (423)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~i 106 (423)
..+|.-++..+ ..++..++||+|++++++++.+++...++ ++|||+++|+++|++|+.|+|..|+.+|++||++
T Consensus 366 ~~~~~~l~~~l-~~~S~~fRhAlR~ala~~~a~~i~~~l~l-----~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~ 439 (701)
T TIGR01667 366 KDILPRLKSHL-TPESPLFRHAVRLSLVVMLGYAILMGTAL-----HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVV 439 (701)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 45666666666 57888999999999999999999987776 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 014509 107 GGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERL 186 (423)
Q Consensus 107 G~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~ 186 (423)
|+++|+++.++.+.+ ...+.+ +.+++.++++++ +. .|+..++++|..+++.......+.++++..|+
T Consensus 440 G~llg~~l~~l~p~~-----~~~l~l-~v~~~~~~~~~~-----~~--~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl 506 (701)
T TIGR01667 440 GLVIGVALHFLIPSL-----EGQLTL-MVITGVAFFAFR-----SK--NYGWATVFITLLVLLCFNLLGLDGEQYILPRL 506 (701)
T ss_pred HHHHHHHHHHHcCcH-----HHHHHH-HHHHHHHHHHHH-----Hh--hHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999887775432 112222 222222222221 23 56666677887655544332325568899999
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchh-hhHHHHhhHhhhHhH
Q 014509 187 TTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLS-SCKSVLHSKAKDESL 265 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l 265 (423)
.+|+|||+++++++.++||.|.+.++++.+.+.++...+++..+++.+..+..+ +..++ ..|+.-++.+++++.
T Consensus 507 ~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~-----~~~yr~aRr~a~~a~a~l~~~ 581 (701)
T TIGR01667 507 IDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPD-----DLAYRIARRNAHNTDAALSTT 581 (701)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887432211 11222 224445555778888
Q ss_pred HhhhccCCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 014509 266 ANFARWEPWHGKFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEPCEIVGSSLAWALRELGES 343 (423)
Q Consensus 266 ~~~a~~Ep~~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~ 343 (423)
.+.+..||++.+ ..++..-.+....+.+...+.+|..+-+... ..++.. .+.+....+...|+.+...
T Consensus 582 ~~~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~r~~~~--~~~~~~----~~~~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 582 LSNMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAHRERLL--NPELAA----ELLQACEIVAKAIQRCQAR 649 (701)
T ss_pred HHHHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhcccccC--ChhHHH----HHHHHHHHHHHHHHHHHHh
Confidence 899999998654 2344444455555556666666654322111 112222 2344445566666666665
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.89 E-value=5e-21 Score=200.47 Aligned_cols=218 Identities=15% Similarity=0.100 Sum_probs=160.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 39 KYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 39 ~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~ 118 (423)
..||..++|++|+.+|++++++++...++ ++|+|+++|+++|++|+.|.|.+|+.+|++||++|+++|+++..+.
T Consensus 345 ~tNp~~~R~ALRt~lAa~La~~i~~~l~w-----~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l 419 (683)
T PRK11427 345 FTNPDYMRYALKTLLACLICYTFYSGVDW-----EGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLV 419 (683)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999887776 8999999999999999999999999999999999999999777544
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHHHHHH
Q 014509 119 QDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSG-LRAEEVMQLARERLTTIVMGFVICI 197 (423)
Q Consensus 119 ~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~-~~~~~~~~~a~~R~~~v~iG~~~a~ 197 (423)
... ..+...+.++++.+.+++.++.. ...+++|+++.+++|+.++.+.. ..+......+.+|+.++++|++++.
T Consensus 420 ~P~--l~~~~~Llllllp~~llg~wv~~---~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA~ 494 (683)
T PRK11427 420 MPW--LDNIVELLFVLAPIFLLGAWIAT---SSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVSA 494 (683)
T ss_pred ccc--cccHHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHHH
Confidence 322 12222233333333333333311 12356899999999988886644 3333334567789999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchh-hhHHHHhhHhhhHhHHhhhccCCc
Q 014509 198 FISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLS-SCKSVLHSKAKDESLANFARWEPW 274 (423)
Q Consensus 198 ~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~a~~Ep~ 274 (423)
+++.++||.|.++.+++.+.+.+++.+++++...+ ...+.+..++ ..+.+..+.++++.+.....+||.
T Consensus 495 la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~--------~~~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq 564 (683)
T PRK11427 495 VIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQ--------QEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQ 564 (683)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccc--------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999998776654211 1111111111 113334456788999999999993
No 8
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.81 E-value=1.7e-17 Score=174.06 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=149.8
Q ss_pred hHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHH
Q 014509 27 LPIISFVREVDSKYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTIL 106 (423)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~i 106 (423)
.++..|++.=.+...|.+.-..+|+.++.+++.++++..+. ++++|++.+|++++||+.|.+..|++.|++||++
T Consensus 12 ~~~~~~~~~~~~~~~P~r~~~~~r~~~a~~L~l~i~~~l~~-----P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~l 86 (683)
T PRK11427 12 VRLLAFFHEELSERRPGRVPQTLQLWVGCLLVILISMTFEI-----PFLALSLAVLFYGIQSNAFYTKFVAILFVVATVL 86 (683)
T ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHheeccchHHHHHHHHHHHHHHHH
Confidence 34456666544345677777779999999999999997776 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHH--HHccCCchHHHHHHHH
Q 014509 107 GGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLV--VVSGLRAEEVMQLARE 184 (423)
Q Consensus 107 G~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV--~~~~~~~~~~~~~a~~ 184 (423)
|+++++++..+.- +.|.+..+++.+|+++|.|+... ++.+|.++++++|. ++ .+++..+ ..-...
T Consensus 87 g~~~~vll~~~~v-----~~P~l~~l~ialw~~~~lyl~r~----~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~ 153 (683)
T PRK11427 87 EIGSLFLIYKWSY-----GYPLIRLIIAGPILMGCMFLMRT----HRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVV 153 (683)
T ss_pred HHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHH-HHHhhcccccc---hHHHHH
Confidence 9999998776654 35888888888999999998432 35689999999994 55 4445443 112277
Q ss_pred HHHH-----HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH
Q 014509 185 RLTT-----IVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARS 226 (423)
Q Consensus 185 R~~~-----v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~ 226 (423)
|..+ +.+|++|+.+||.++||.+.++.++..+.+.+++....
T Consensus 154 R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~ 200 (683)
T PRK11427 154 RLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISH 200 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHH
Confidence 8888 99999999999999999999999999999999876554
No 9
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.75 E-value=3e-16 Score=169.45 Aligned_cols=181 Identities=22% Similarity=0.343 Sum_probs=143.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 39 KYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFY-AGATLSKGLNRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 39 ~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~-~G~t~~k~~~Ri~GT~iG~~~~~~~~~~ 117 (423)
++++..++||+|+++++++++++....++ ++++|+++|+++|++|+ .|++..++.+|+.||++|+.+|.++.++
T Consensus 349 ~~~~~alr~a~R~ala~~~~~~~~~~~~w-----~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~ 423 (674)
T COG1289 349 RLNSPALRHALRTALALLLGYAFWLALGW-----PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLL 423 (674)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999887766 89999999999999999 9999999999999999999999988777
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHH
Q 014509 118 AQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICI 197 (423)
Q Consensus 118 ~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~ 197 (423)
..... . . .+.++++.+..++.+++. .+|.|+.+ ++|..+.+..+..+.+.......|+.++++|+++++
T Consensus 424 ~~p~~-~-~--~l~~l~~~~~l~~~~~~~-----~~~~~a~~--~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lIa~ 492 (674)
T COG1289 424 LLPLI-P-G--LLLLLLLAALLFAAGIRL-----AKYRLATL--GITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLIAL 492 (674)
T ss_pred hcccc-h-h--HHHHHHHHHHHHHHHHHh-----cchhHHHH--HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHH
Confidence 65432 1 1 122222222222233322 24566654 455555554554455777889999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014509 198 FISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYF 235 (423)
Q Consensus 198 ~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~ 235 (423)
++..++||.|....+++...+.++...+++....+++.
T Consensus 493 ~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~ 530 (674)
T COG1289 493 ALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREP 530 (674)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988887653
No 10
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=3.2e-15 Score=146.14 Aligned_cols=164 Identities=19% Similarity=0.205 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 014509 46 IHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIG 125 (423)
Q Consensus 46 ~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~ 125 (423)
...+|+|+|++++++++.+.++ +.|..|++|+++.++|+...+++++++|++|+++|+++|.++.++++.
T Consensus 11 ~RtlKt~ia~~La~~ia~~l~~-----~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~----- 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHLLGL-----PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQ----- 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----
Confidence 4569999999999999997766 889999999999999999999999999999999999999999888863
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014509 126 NSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLLVFP 205 (423)
Q Consensus 126 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~i~P 205 (423)
+|+.+++.+.+++.++..++. .-|.....++...+++ +...+..+... |+.++++|+++|++||.+++|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~~--------~~g~~~~~~~~~~ii~-~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLKL--------ENGVVPITVGVLHILV-AAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHH-HcccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 588888888888877766543 2233332233222222 22222333333 999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 206 IWAGDELHDSLTSKFEHLARSIEGCLE 232 (423)
Q Consensus 206 ~~a~~~L~~~l~~~l~~~~~~~~~~l~ 232 (423)
+. .+++....+......+.+.....
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il~~~~~ 174 (332)
T COG4129 150 PD--YELKLYRAKVEAILASILWEVAS 174 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 56666666666665555544443
No 11
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.70 E-value=9.6e-15 Score=157.82 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=150.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 014509 40 YDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAA-AFA 118 (423)
Q Consensus 40 ~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~-~~~ 118 (423)
....+++|++|+.+|++++.++++..++ ++|.|+++|+.++++|..|+.+.|++.|++||++|..++.++. .+.
T Consensus 6 ~~~~~~~~~lr~~~a~~la~~~~~~~~l-----~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~ 80 (674)
T COG1289 6 PTNADWRYALRTFLAACLALALAFLLGL-----PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLA 80 (674)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCC-----CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556799999999999999999998877 9999999999999999999999999999999999999999665 444
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHcc--CC-chHHHHHHHHHHHHHHHHHHH
Q 014509 119 QDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSG--LR-AEEVMQLARERLTTIVMGFVI 195 (423)
Q Consensus 119 ~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~--~~-~~~~~~~a~~R~~~v~iG~~~ 195 (423)
+. |+.+.+++.+|.++|+..... .....+|+++++++|+.++. +. +. +...+..+++|..++++|+.|
T Consensus 81 ~~------p~~f~~~~~~~~~l~~~~~~~--~~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~ 151 (674)
T COG1289 81 QE------PWLFLLLLTLWLGLCTAIGSL--YRTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILC 151 (674)
T ss_pred cC------cHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333334444444444443221 12234899999999998887 32 21 345789999999999999999
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchhhhHHHHhhHhhhHhHHhhhccCCcc
Q 014509 196 CIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLSSCKSVLHSKAKDESLANFARWEPWH 275 (423)
Q Consensus 196 a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~a~~Ep~~ 275 (423)
+-.+....+|.+....|...+............... ..+..+. .....+..+.+++....+.+... .+|.++
T Consensus 152 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~l~~~~~~~~~r~~-~~~~~~ 223 (674)
T COG1289 152 APVVPLLESPSRLYQALANYLEAKSRLFAQLLLAAA----AGELLDT---ARQNAALVDALAQTLTLRLLRSA-GFEGSR 223 (674)
T ss_pred hccchHhhhHHHHHHHHHHHHHHHHhccchhhhhhh----cCCcccH---HHHhHHHHHHHHHHHHHHHHHHh-cccCCc
Confidence 999998888877766665555444433322221111 1111110 11112345556666666666666 778765
Q ss_pred cc
Q 014509 276 GK 277 (423)
Q Consensus 276 gr 277 (423)
++
T Consensus 224 ~~ 225 (674)
T COG1289 224 GR 225 (674)
T ss_pred hh
Confidence 54
No 12
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.65 E-value=1.6e-14 Score=135.82 Aligned_cols=210 Identities=13% Similarity=0.067 Sum_probs=146.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--CCCC--cchhhhHHHHhhHhhhHhHHhhhccCCccccc
Q 014509 203 VFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKE--NRPG--FSLSSCKSVLHSKAKDESLANFARWEPWHGKF 278 (423)
Q Consensus 203 i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~~~~~l~~~a~~Ep~~gr~ 278 (423)
++|.+++..+|+.+++.+..++++|+.+++.+......++ .... ...+...++.....+++.++.+++|||+.+
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~-- 78 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLK-- 78 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC--
Confidence 4799999999999999999999999999887764321111 1111 122333444445578899999999999843
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhccCCc--cccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHhhccCCCccccc
Q 014509 279 RLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPR--QSLQNLRASIKEPCEIVGSSLAWALRELGESIKKMNKCETAGLI 356 (423)
Q Consensus 279 ~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~--~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~l~~~~~~~~~~~~ 356 (423)
++||.+.|+++.+.+.++.+.+..+......++ .|..++.......-..+.+++..+|..++++++++.|.|+...
T Consensus 79 -G~FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~~lp- 156 (229)
T PF10334_consen 79 -GRFPKETYQRLLELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPPYLP- 156 (229)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCccCC-
Confidence 579999999999999999988888777666552 3333443333322234556788999999999999999887632
Q ss_pred hhhHHHHHHHHh---hhcC----------ccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014509 357 MPKLKSIRHELN---LIIT----------PSALASVEKSTDALELASFVFSLMEMVDKVEELTKEVEELGGLAG 417 (423)
Q Consensus 357 ~~~~~~a~~~L~---~~~~----------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~l~~l~~~v~~L~~~a~ 417 (423)
.+-..+..+-+. .... ..+.+++.+ .+...|+++.+....|++++|+++..||+|+|+.+
T Consensus 157 ~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~~ 229 (229)
T PF10334_consen 157 APLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRD-EDYRRFCVAVSAASSILERLDELVIVVKELVGEQY 229 (229)
T ss_pred cchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 111122211111 1110 011233333 67888999999999999999999999999999864
No 13
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.63 E-value=4e-15 Score=126.82 Aligned_cols=123 Identities=27% Similarity=0.392 Sum_probs=93.3
Q ss_pred HHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 014509 59 SLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISG 138 (423)
Q Consensus 59 ~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~ 138 (423)
.+++.+.+. +|++|+++|++++++|+.|++.+|+.+|++||++|+++|++++.+.++ + +....+++++.
T Consensus 3 ~~i~~~~~~-----~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~-----~-~~~~~~~~~~~ 71 (128)
T PF13515_consen 3 FFIAQWLGL-----PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPG-----N-YVLILIVFLLM 71 (128)
T ss_pred hhHHHHHcC-----CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----H-HHHHHHHHHHH
Confidence 344444444 899999999999999999999999999999999999999998877653 2 34444444444
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHHHHHccCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 139 AAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLR---AEEVMQLARERLTTIVMGFVICIFI 199 (423)
Q Consensus 139 ~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~---~~~~~~~a~~R~~~v~iG~~~a~~v 199 (423)
.+..|.+ +. +|+...+++|..++.+.++. +++.++.+..|+.++++|+++++++
T Consensus 72 ~~~~~~~-----~~--~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 72 FLIFYFL-----SK--NYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred HHHHHHH-----hc--cHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 4443432 22 45666677888777776652 4667889999999999999999874
No 14
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.62 E-value=1.3e-14 Score=125.88 Aligned_cols=136 Identities=21% Similarity=0.377 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q 014509 47 HSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGN 126 (423)
Q Consensus 47 ~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~ 126 (423)
..+|+++|.+++.+++.+.++ ++|++|.+++++.+|||..+|++.+.+|+.|+++|+++|+++..+.+. +
T Consensus 6 r~iKtaiA~~la~~ia~~l~~-----~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~-----~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGL-----QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGY-----N 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-----CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----c
Confidence 458999999999999987765 889999999999999999999999999999999999999988877643 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014509 127 SIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLLV 203 (423)
Q Consensus 127 ~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~i 203 (423)
|+.+++.+++....+..++. .-+...+.++...+.. ..+++ +..+..|+.++++|+.++++||.++
T Consensus 76 ~~~~~l~v~i~i~~~~~l~~--------~~~~~~a~v~~~~i~~--~~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWLKL--------GEGIIVAAVTFVHILL--SGSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------CCeehHHHHHHHHHHH--cCCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888877777766543 2233333444333332 22223 3449999999999999999999863
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.44 E-value=2.2e-10 Score=118.64 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=173.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 39 KYDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIF-EFYAGATLSKGLNRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 39 ~~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~-~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~ 117 (423)
..|.+.++.-+|..++..++.+++...+...++|..+|.+.|..+++. .-..|..+...+.=++|+++|.+.|++..++
T Consensus 10 ~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~ 89 (459)
T PF10337_consen 10 HLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYI 89 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999988889888888777665543 3377888888888999999999988877666
Q ss_pred hhhcC-C------------------CchH-------------------HHHHHHHHHHHHHHHHHhhhccccccchhHHH
Q 014509 118 AQDVG-G------------------IGNS-------------------IVVGISVFISGAAATYMRLVPRIKKRYEYGTM 159 (423)
Q Consensus 118 ~~~~g-~------------------~~~~-------------------~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~ 159 (423)
....- + ..++ .+.++.+++.+++..++|... +++..+.+
T Consensus 90 a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~---p~~~~~~I 166 (459)
T PF10337_consen 90 AVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKN---PKLNFPVI 166 (459)
T ss_pred HHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhC---cchHHHHH
Confidence 54221 1 0011 222333333333444444321 23444444
Q ss_pred HHHHHHHHHHHccCC-ch-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014509 160 IFILTFNLVVVSGLR-AE-EVMQLARERLTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKV 237 (423)
Q Consensus 160 i~~~T~~lV~~~~~~-~~-~~~~~a~~R~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~ 237 (423)
.+.+..++.+.++.. |. ....++..=+.-..+|+++++++|++|||.+.+..+.+.+.+.+..+.+.+..-.+ |+..
T Consensus 167 ~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~-~l~~ 245 (459)
T PF10337_consen 167 FGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRN-FLQS 245 (459)
T ss_pred HHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHhC
Confidence 444444333333322 33 44566666667888999999999999999999999999999999888777765443 4443
Q ss_pred cccccCCCC---cchhhhHHHHhhH-hhhHhHHhhhccCCcccccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 014509 238 DTEKENRPG---FSLSSCKSVLHSK-AKDESLANFARWEPWHGKFRLSYPWKKYLKIGEVLRDMAANVLSVKG 306 (423)
Q Consensus 238 ~~~~~~~~~---~~~~~~~~~l~~~-~~~~~l~~~a~~Ep~~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~ 306 (423)
.+.+.+... ..+++.+..+.+. .+++.-..+++.|-..|| ++-+.++.+...+|++...+..|..
T Consensus 246 ~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~gr----l~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 246 SEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGR----LSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeec----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221110 2233333333333 667777899999988775 6678899999888887655554444
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.20 E-value=2.5e-08 Score=107.79 Aligned_cols=176 Identities=17% Similarity=0.092 Sum_probs=130.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 40 YDLRKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIF--EFYAGATLSKGLNRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 40 ~d~~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~--~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~ 117 (423)
+.+..++.++|+++++.+++++....++ +.+..+++++.|++ -.+.++...+...++.|+++|+++|+++.++
T Consensus 335 d~~~A~~~alra~la~~~~~l~Wi~t~W-----~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 335 DWPLALRNALRAFLAILIAGLFWIATGW-----PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888776655 88888888888877 6788999999999999999999999977654
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHH
Q 014509 118 AQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICI 197 (423)
Q Consensus 118 ~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~ 197 (423)
..... .+...++++++++..++.+... ++++.+.++.+++++.+...++..+...+....++...+++|++++.
T Consensus 410 vlP~~--~~f~~L~l~l~~~l~~~~~~~~----~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~ 483 (650)
T PF04632_consen 410 VLPHL--DGFPLLALVLAPFLFLGGLLMA----RPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAA 483 (650)
T ss_pred hhhcc--CcHHHHHHHHHHHHHHHHHHHc----CchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 43221 2233344444444433333322 45667666666666655554555445567788999999999999999
Q ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHH
Q 014509 198 FISLLVFPIWAGDELHDSLTSKFEHLARS 226 (423)
Q Consensus 198 ~v~~~i~P~~a~~~L~~~l~~~l~~~~~~ 226 (423)
++..+++|.+.....++.+....+++.+.
T Consensus 484 l~~~li~p~~~~~~~rrl~~~~~~~l~~~ 512 (650)
T PF04632_consen 484 LVFRLIRPFSPEWRRRRLLRALRRDLARL 512 (650)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887654
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=99.08 E-value=9e-08 Score=93.03 Aligned_cols=241 Identities=16% Similarity=0.136 Sum_probs=124.0
Q ss_pred HHHHHHHHH-HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCC-chHHH
Q 014509 102 IGTILGGGL-GCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLR-AEEVM 179 (423)
Q Consensus 102 ~GT~iG~~~-~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~-~~~~~ 179 (423)
+.|+++..+ ++++..... +|+.+.+.++++++++.++..+. .+ + ..++..|. ++++++.. +...
T Consensus 3 ~~~~~~~~~~s~~~~l~~~------~~~l~~~~~~~~~F~~~ml~~~G---~r--~-~~i~~~~L-l~~v~t~~~~~~~- 68 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFP------YPWLLILVLALLTFFFGMLGVYG---PR--A-ATIGFATL-LVAVYTMAGPSPG- 68 (284)
T ss_pred HHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHh---hH--H-HHHHHHHH-HHHHHHHhCCCcc-
Confidence 345555533 334444333 34555556666655555554432 11 2 22222222 23333322 2212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccCCCCcchhhhHHHHhh
Q 014509 180 QLARERLTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDT-EKENRPGFSLSSCKSVLHS 258 (423)
Q Consensus 180 ~~a~~R~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 258 (423)
..++.+...+++|.++.++++.+.||.+..+..++.+++.+..+++++..-.+-| +.+. ++.+.........+..+++
T Consensus 69 ~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~-~p~~~~~~~~~~~~l~~~q~~v~~ 147 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFF-DPDQHDDDEQLRIELAQQQIKVNE 147 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccchhHHHHHHHHHHHHHHH
Confidence 2678888999999999999999999999999999999999999999987644333 1111 1110000101111222222
Q ss_pred H-hhhHhHHhhhccCCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHH-----HhhhHHHHHHHH
Q 014509 259 K-AKDESLANFARWEPWHGKFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRA-----SIKEPCEIVGSS 332 (423)
Q Consensus 259 ~-~~~~~l~~~a~~Ep~~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~-----~~~~~~~~~~~~ 332 (423)
. ...+..+-..+. +.+++ |.....+....+-...+..+...+... ..+.+++ .+...++++..+
T Consensus 148 ~~~~~R~~l~~~r~-~~~~~-----~~~~~~~ll~~~~~a~Dl~E~~~as~~----~y~~l~~~f~~~~~l~~~~~~l~~ 217 (284)
T PF12805_consen 148 ALEQARELLLRRRR-SGRGK-----PSTYGRRLLLLFFEAVDLFERALASHY----DYEELREQFKHSDVLFRFQRLLEQ 217 (284)
T ss_pred HHHHHHHHHHHhhc-ccCCC-----CCcHHHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHhcCChHHHHHHHHHHH
Confidence 2 223332222211 22221 222222222222222222222222211 1122222 223456677788
Q ss_pred HHHHHHHHHHhHhhccCCCccccchhhHHHHHHHHhhhc
Q 014509 333 LAWALRELGESIKKMNKCETAGLIMPKLKSIRHELNLII 371 (423)
Q Consensus 333 ~~~~L~~La~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 371 (423)
.+..++.++.++...++.+. .++++...++++..+
T Consensus 218 ~a~~l~~ia~ai~~~~~~~~----~~~l~~~l~~l~~~l 252 (284)
T PF12805_consen 218 LAQALRQIAQAILRGRPYHH----RNRLKRALEALEESL 252 (284)
T ss_pred HHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHHHHH
Confidence 89999999999998776543 246777777777665
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.93 E-value=1.1e-06 Score=94.71 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 014509 43 RKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVG 122 (423)
Q Consensus 43 ~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g 122 (423)
..+.+++|+.+|+..+.++.++.+. . .-+.=+.+.++...-.+..+.+..=+.+++-|++..+++.+...+...
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~~~---~-~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~-- 79 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFFDI---S-SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFG-- 79 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCc---h-hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 5789999999999888777764432 0 112222333444444577777777788888888888877766554432
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 123 GIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLL 202 (423)
Q Consensus 123 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~ 202 (423)
.|+++.+.+++.++++..+..+ .+|| +. +++-|. +|+++.+...+.....+......++|.++..+++.+
T Consensus 80 ---~p~lf~~~l~~~tf~~~mlga~---G~Ry--a~-Iaf~tL-liaiytmlg~~~~~~w~~~pllll~GalwY~llsl~ 149 (704)
T TIGR01666 80 ---KPWLFAVGLTVSTFGFIMLGAV---GQRY--AT-IAFGSL-LVALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLI 149 (704)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHh---hhhH--HH-HHHHHH-HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554444333333222 2333 21 222222 222222211111112344678889999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 203 VFPIWAGDELHDSLTSKFEHLARSIEGCLE 232 (423)
Q Consensus 203 i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~ 232 (423)
.++.+..+-+++.+++.+..++++++.--+
T Consensus 150 ~~~l~p~rp~q~~LA~~y~~La~yL~aka~ 179 (704)
T TIGR01666 150 VHLFFPNRPVQENLAKAFCQLAEYLETKSC 179 (704)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998875443
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.86 E-value=3e-06 Score=91.69 Aligned_cols=289 Identities=14% Similarity=0.091 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 014509 43 RKLIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVG 122 (423)
Q Consensus 43 ~~~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g 122 (423)
..+.+++|+.+|+..+.++.++.+. . ..+.=+.+.++...-.+..+.+..=+.+++-|++..+++.+...+...
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~~g~---~-~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~-- 79 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWWFGL---L-FLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFP-- 79 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC---c-cHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 5788999999999888776664332 0 111122222322333466677666666777776666666655544332
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccccccch---hHHH-HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 014509 123 GIGNSIVVGISVFISGAAATYMRLVPRIKKRYE---YGTM-IFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIF 198 (423)
Q Consensus 123 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~---y~~~-i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~ 198 (423)
.|+++.+.+++.++++..+..+ .++|. +|.+ ++++| ++ +....+ ..+.--..+++|.++..+
T Consensus 80 ---~p~~~~~~l~~~tf~~~mlga~---G~r~~~I~f~~L~~aiyt--ml---~~~~~~---~w~~~pllll~GalwY~l 145 (701)
T TIGR01667 80 ---KPWLFPFLLTLLTFGFILLGAL---GQRYATIAFASLLAAIYT--ML---GAGEVP---VWFIEPLLILAGTLWYGL 145 (701)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHh---hhhHHhHHHHHHHHHHHH--Hc---Cccccc---HHHHHHHHHHHHHHHHHH
Confidence 3555555554444433333222 23443 2222 11122 11 221111 122345567889999999
Q ss_pred HHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCcchh---hhHHHHhhHhh-hHhHHhhhccCCc
Q 014509 199 ISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEEYFKVDTEKENRPGFSLS---SCKSVLHSKAK-DESLANFARWEPW 274 (423)
Q Consensus 199 v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~-~~~l~~~a~~Ep~ 274 (423)
++.+.++.+..+..++.+++.+..++++++.=-+ +++.+++++. +....+ .-.++.+..++ -+.+..-.+
T Consensus 146 ~sll~~~l~p~rp~q~~La~~y~~La~yL~aKa~-lf~p~~~~~~-~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~---- 219 (701)
T TIGR01667 146 LTLIWFLLFPNQPLQESLSRLYRELAEYLEAKSS-LFDPDQHTDP-EKALLPLAVRNGKVVDALNQCKQQLLMRLR---- 219 (701)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 9999888888889999999999999998764333 3321111110 001111 00112222111 112221111
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhH-----HHHHHHHHHHHHHHHHHhHhhccC
Q 014509 275 HGKFRLSYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEP-----CEIVGSSLAWALRELGESIKKMNK 349 (423)
Q Consensus 275 ~gr~~~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~-----~~~~~~~~~~~L~~La~~l~~~~~ 349 (423)
++ .+.....++. +.-.....++....+.+...+++++.++.. ++++-.+..+.+++++.++...++
T Consensus 220 -~~----~~~~~~~rll----~~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~~~~ 290 (701)
T TIGR01667 220 -GN----RTDPLTKRML----RYYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILLRQP 290 (701)
T ss_pred -CC----CCCchHHHHH----HHHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11 1111111111 111112233333333333344555555544 677778889999999999998665
Q ss_pred CCccccchhhHHHHHHHHhhh
Q 014509 350 CETAGLIMPKLKSIRHELNLI 370 (423)
Q Consensus 350 ~~~~~~~~~~~~~a~~~L~~~ 370 (423)
.+.. ++.+.+.++++..
T Consensus 291 ~~~~----~~~~~~~~~l~~s 307 (701)
T TIGR01667 291 YYHR----LRTERALEKQIAA 307 (701)
T ss_pred CCCC----chHHHHHHHHHHH
Confidence 4432 3444444444443
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.88 E-value=0.018 Score=61.99 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcc--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 014509 45 LIHSIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFE--FYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVG 122 (423)
Q Consensus 45 ~~~alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~--p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g 122 (423)
..-++|+++++++++.+.....+ +.|.-+++.+.|++. -+..+-..-..+=+.||++|..+|.++..+.-...
T Consensus 353 ~~~glRa~~ai~~~~~fWI~TgW-----~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i 427 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLWTGW-----TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNT 427 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-----chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44567888888888776665544 677776666555432 12223333344455899999988886644332211
Q ss_pred CCchHHHHHHHHHHHH-HHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 123 GIGNSIVVGISVFISG-AAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISL 201 (423)
Q Consensus 123 ~~~~~~~~~~~v~l~~-~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~ 201 (423)
.+...++++++.... ++++.. + ++ .++.+-+.+.++..+...-...-.+....+--+..++|+++++++..
T Consensus 428 -~~~f~lL~laLap~~~~~g~~~---~--~~--~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~ 499 (652)
T PRK10631 428 -QQSMLLLCISLGVLGFFIGIEV---Q--KR--RLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVIL 499 (652)
T ss_pred -cccHHHHHHHHHHHHHHHHHHh---c--cc--HHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222333222221 222221 1 23 33322222333333222222233456677888899999999999998
Q ss_pred hcccccchHHHHHHHHHHHH
Q 014509 202 LVFPIWAGDELHDSLTSKFE 221 (423)
Q Consensus 202 ~i~P~~a~~~L~~~l~~~l~ 221 (423)
++.|.......|+.+.....
T Consensus 500 lirp~~~~r~~rrL~~~~~~ 519 (652)
T PRK10631 500 LVRDNSRDRTGRVLLNQFVS 519 (652)
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 88887665555554444443
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.87 E-value=0.057 Score=46.73 Aligned_cols=138 Identities=16% Similarity=0.212 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Q 014509 48 SIKVGVALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGNS 127 (423)
Q Consensus 48 alK~~lA~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~ 127 (423)
++|.+++.+++..+++..++ +.|.-+.+-.++.+.+..--+.+...+=+..+++-+..+.++..+.+++ |
T Consensus 2 ~LRia~g~~l~l~~~~~~~~-----~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~-----P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGW-----PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDY-----P 71 (140)
T ss_pred eeehhHHHHHHHHHHHHHCC-----CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C
Confidence 57999999999999987776 8899988888888776666777777777778888888888776666543 5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 128 IVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLL 202 (423)
Q Consensus 128 ~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~ 202 (423)
....+++++....++|.... ++++-.+.+ ..+...++...+..+ ...+.++......|++++.++.++
T Consensus 72 ~~~~l~v~l~~~~~f~~~~~---~~~~l~~~~-~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLLFFWSFYRMSR---GPKFLFGTM-LLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCchHHHHH-HHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555544444332221 223333332 223333332223222 235677778888888888877653
No 22
>COG4129 Predicted membrane protein [Function unknown]
Probab=88.26 E-value=29 Score=34.51 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Q 014509 93 TLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISG 138 (423)
Q Consensus 93 t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~ 138 (423)
-..|...|++=|.+|+.+++.+..+.+.+ .|...+++..+|.
T Consensus 5 ~~~~ig~RtlKt~ia~~La~~ia~~l~~~----~~~~A~i~AV~~l 46 (332)
T COG4129 5 RMRKIGARTLKTGLAAGLALLIAHLLGLP----QPAFAGISAVLCL 46 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC----chHHHHHHHhhcc
Confidence 34577899999999999999887776544 3655555554444
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=86.30 E-value=3.3 Score=31.48 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 187 TTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGCLEE 233 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~l~~ 233 (423)
...++|.+++.++.+++-|. .++++|+.+.+..+++.+......+.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999988884 78889999999998887766555443
No 24
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=84.70 E-value=22 Score=35.87 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHH----HHHHHHhhhccccccchhHHHHHHHHHHHHHHc
Q 014509 96 KGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISG----AAATYMRLVPRIKKRYEYGTMIFILTFNLVVVS 171 (423)
Q Consensus 96 k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~----~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~ 171 (423)
.+..-+++|+.|+.+++....|.- .+.++...-.. .+-.|++. + ..+...|..++.+.|+++.+.
T Consensus 45 ~~ar~lLstia~smitv~~~~fSi--------~~val~~assq~sPR~l~~f~~d-~--~~q~vLg~Figtfvy~l~~l~ 113 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTGFVFSI--------TLVALQLASSQFSPRLLRNFMRD-R--VTQVVLGTFIGTFVYSLLVLI 113 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhcccchHHHHHHHhC-c--hHHHHHHHHHHHHHHHHHHHH
Confidence 345566888888888876554431 11111111100 11223221 0 123366888888888988877
Q ss_pred cCCc
Q 014509 172 GLRA 175 (423)
Q Consensus 172 ~~~~ 175 (423)
..+.
T Consensus 114 ~i~~ 117 (371)
T PF10011_consen 114 AIRS 117 (371)
T ss_pred Hccc
Confidence 6653
No 25
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=83.51 E-value=80 Score=35.21 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014509 212 LHDSLTSKFEHLARSIEGCLEEY 234 (423)
Q Consensus 212 L~~~l~~~l~~~~~~~~~~l~~~ 234 (423)
+|+...+.+++.++.++..-+.+
T Consensus 308 ~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 308 VREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776665444
No 26
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=72.11 E-value=11 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 384 DALELASFVFSLMEMVDKVEELTKEVEELGG 414 (423)
Q Consensus 384 ~~~~~~~~~~ll~~~~~~l~~l~~~v~~L~~ 414 (423)
...|.+..+.||+++=.++|++.+++++|..
T Consensus 6 ~GFPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 6 VGFPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888899999999999999999999975
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.08 E-value=20 Score=29.38 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014509 92 ATLSKGLNRGIGTILGGGLGCLAAAFAQDV 121 (423)
Q Consensus 92 ~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~ 121 (423)
+-++-+..=+.|+++|+++|+++=.++..+
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTs 73 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTS 73 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455666889999999999998888643
No 28
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=67.66 E-value=22 Score=29.51 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 014509 186 LTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEG 229 (423)
Q Consensus 186 ~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~ 229 (423)
+..+++|.+++.++..++-|. .+.++|+.+.+..+.+-...+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~~~~~ae~ 50 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDALFELAED 50 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhHHHHHH
Confidence 467889999999999887775 5677886666665554444333
No 29
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.06 E-value=20 Score=30.80 Aligned_cols=44 Identities=25% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCcc-hhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 73 ENAM-WAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 73 ~~~~-Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~ 117 (423)
+++. .+.++++.++.....+... ..+|++-|++|.++|+++-++
T Consensus 96 ~~~~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN~~ 140 (141)
T PF06081_consen 96 GEGIIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVNLL 140 (141)
T ss_pred CCeehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 4443 4555555555443333334 999999999999999987543
No 30
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=63.11 E-value=99 Score=26.61 Aligned_cols=71 Identities=17% Similarity=0.063 Sum_probs=46.5
Q ss_pred CCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 014509 73 ENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMR 145 (423)
Q Consensus 73 ~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~ 145 (423)
+-+.|+..-..-..--. |...+....=+.+...|.+.|.++....+..+.. .+....+.+++......+..
T Consensus 19 ~l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~~~ 89 (144)
T PF06496_consen 19 GLPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVYQA 89 (144)
T ss_pred CchHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHHh
Confidence 34589777665554444 8888888888889999999999777766654311 24555566666555544543
No 31
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=60.69 E-value=38 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014509 98 LNRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 98 ~~Ri~GT~iG~~~~~~~~~~ 117 (423)
..|++|.++|.++|+++..+
T Consensus 8 ~~~iiG~~~G~ila~l~l~~ 27 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLILTF 27 (51)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 45777777777777765544
No 32
>PRK10263 DNA translocase FtsK; Provisional
Probab=59.12 E-value=2.7e+02 Score=32.99 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=7.9
Q ss_pred ChhHHHHHHHHHHHH
Q 014509 89 YAGATLSKGLNRGIG 103 (423)
Q Consensus 89 ~~G~t~~k~~~Ri~G 103 (423)
.+|+.+...+.-++|
T Consensus 66 iVGA~LAD~L~~LFG 80 (1355)
T PRK10263 66 MPGAWLADTLFFIFG 80 (1355)
T ss_pred hHHHHHHHHHHHHHh
Confidence 445555555555555
No 33
>PRK11677 hypothetical protein; Provisional
Probab=55.56 E-value=45 Score=28.60 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhccccc-chHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 187 TTIVMGFVICIFISLLVFPIW-AGDELHDSLTSKFEHLARSIEGCLE 232 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~i~P~~-a~~~L~~~l~~~l~~~~~~~~~~l~ 232 (423)
+..+||+++++++..+.-|.. ....|.+.+.+.-..+.++=+.+.+
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999998766652 3455555555555555444333333
No 34
>COG5547 Small integral membrane protein [Function unknown]
Probab=52.19 E-value=69 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 94 LSKGLNRGIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 94 ~~k~~~Ri~GT~iG~~~~~~~~~~~ 118 (423)
+++.-+|++|-++|.++|+++..+.
T Consensus 4 lk~fkypIIgglvglliAili~t~G 28 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTFG 28 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 5677789999999999998776654
No 35
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=49.86 E-value=1.9e+02 Score=25.75 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLAGF 418 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a~f 418 (423)
.....+.++..+|++.+....+++...|
T Consensus 178 ~~~~~~~i~~~lERigD~~~nIae~~~~ 205 (212)
T TIGR02135 178 AALDVLLIARYLERIGDHATNIAERVIY 205 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888999998888777765443
No 36
>PRK09776 putative diguanylate cyclase; Provisional
Probab=48.66 E-value=2.9e+02 Score=31.72 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 014509 102 IGTILGGGLGC 112 (423)
Q Consensus 102 ~GT~iG~~~~~ 112 (423)
.|-++|++++.
T Consensus 47 ~~~~~~~~~~~ 57 (1092)
T PRK09776 47 PGILLSCSLGN 57 (1092)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 37
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=46.42 E-value=1.7e+02 Score=24.34 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=37.3
Q ss_pred hhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 014509 78 AIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYM 144 (423)
Q Consensus 78 a~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~ 144 (423)
...++.+...|+.- ..+=.+=+.|.++++++|+++..+... .++..++.+.+...+....
T Consensus 7 gAsa~llf~~p~sp--~aqP~~vi~gh~isa~iG~~~~~~~~~-----~~~~~alav~lai~~M~~~ 66 (120)
T PF04982_consen 7 GASAVLLFGAPSSP--LAQPRNVIGGHLISALIGVLCVYLFGD-----PWWAAALAVGLAIVLMVLT 66 (120)
T ss_pred HHHHHHhhcCCCCc--hhchHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHH
Confidence 34444455556532 345566679999999999998888753 2445566666555444443
No 38
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=42.45 E-value=5.1e+02 Score=29.90 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014509 161 FILTFNLVVVSG-LRAEEVMQLARERLTTIVMGFVICIFISLLVFPI 206 (423)
Q Consensus 161 ~~~T~~lV~~~~-~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~i~P~ 206 (423)
+.+|...+++|- +.++..-++...=...+++..+++++++.++-|.
T Consensus 438 stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~ 484 (1021)
T PF00873_consen 438 STLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPA 484 (1021)
T ss_dssp HHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444442 2233333444444567788888999999998884
No 39
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=42.11 E-value=69 Score=26.25 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014509 162 ILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLLVFPI 206 (423)
Q Consensus 162 ~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~i~P~ 206 (423)
.+|..++. ....++....+.+|+..+++|++++.+...+ .|.
T Consensus 18 ~it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~-~~~ 59 (128)
T PF13515_consen 18 PITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLYL-FPG 59 (128)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 35554443 3345778899999999999999999998854 553
No 40
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=40.86 E-value=3.2e+02 Score=25.90 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCchH
Q 014509 99 NRGIGTILGGGLGCLAAAFAQDVG-GIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRAEE 177 (423)
Q Consensus 99 ~Ri~GT~iG~~~~~~~~~~~~~~g-~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~~~ 177 (423)
.|++=-++|.++-+..-.+..+.. .......+|+...+.+.+....|+.| +++-.|+.++++.++....+... ..+
T Consensus 12 ~r~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~lP--rk~~~~~~l~gg~~~~~y~l~~~-~~n 88 (249)
T PF10225_consen 12 WRVAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLLP--RKSMFYAVLYGGWSFGLYFLQQL-WEN 88 (249)
T ss_pred HHHHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHcc--CcchhHHHHhhhhHHHHHHHHHH-HHH
Confidence 355545555555444433333221 00112234444444444445567777 33334666655555444332221 111
Q ss_pred H---H-HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Q 014509 178 V---M-QLARERLTTIVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLA 224 (423)
Q Consensus 178 ~---~-~~a~~R~~~v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~ 224 (423)
. + +....=+..+++..++..+|++-..|.. .+..++-+...++-++
T Consensus 89 l~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~-~~rs~~~v~W~Lqlig 138 (249)
T PF10225_consen 89 LQSILEEYRIYVLGYVLVVGLVSFAVCYRYGPPV-DPRSRNFVKWALQLIG 138 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cHhHHHHHHHHHHHHH
Confidence 1 1 2223333445555556666666555653 3555666666665554
No 41
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=40.74 E-value=22 Score=35.23 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 014509 98 LNRGIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 98 ~~Ri~GT~iG~~~~~~~~~~~ 118 (423)
+-|+.|+++|+++|++.+.+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 558999999999999887664
No 42
>TIGR00930 2a30 K-Cl cotransporter.
Probab=40.55 E-value=5.9e+02 Score=29.32 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=20.8
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 87 EFYAGATLSKGLNRGIGTILGGGLGCLAA 115 (423)
Q Consensus 87 ~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~ 115 (423)
.|..|+.+ --+.|.+|..+|+.+|++.+
T Consensus 139 ~p~aGG~Y-~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 139 VVKGGGAY-YLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCCccHHH-HHHHHHhCcHHHHHHHHHHH
Confidence 45656655 36789999999999998654
No 43
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=38.12 E-value=82 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 014509 96 KGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMR 145 (423)
Q Consensus 96 k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~ 145 (423)
.=+.=+.|.++.+++|+.+.++.+++ +...++.+.+.+...++.|
T Consensus 80 QPwsiiGGNlvaAlvgvtva~~vgd~-----~la~~lavsLaI~~M~~~r 124 (382)
T COG3448 80 QPWSIIGGNLVAALVGVTVAYFVGDP-----VLASGLAVSLAIGAMFALR 124 (382)
T ss_pred cchhhhcchHHHHHHhhhhhhhhCCh-----HHHHHHHHHHHHHHHHHhc
Confidence 34556789999999999999988754 3445555555555555555
No 44
>PRK09823 putative inner membrane protein; Provisional
Probab=37.19 E-value=2.7e+02 Score=23.93 Aligned_cols=92 Identities=18% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHccCCc
Q 014509 96 KGLNRGIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVVSGLRA 175 (423)
Q Consensus 96 k~~~Ri~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~~~~~~ 175 (423)
.++.-++|+.+|+.+.+..-.+..+.. ..+.+...+.++-.....++ -+|.+-+.+|-..+ +.-|
T Consensus 11 ~~wFallGPlIGv~~~i~~i~f~~~~~-~~~lll~i~~i~plf~~l~w-----------~~g~~pAlLTGVa~---AclP 75 (160)
T PRK09823 11 GLWFALLGPLIGVLFLVLYIFFLPGAK-EPLLLLVIIQVLPLFLLLSW-----------TTGAIPALLTGVAV---ACLP 75 (160)
T ss_pred hhHHHHhcchhhhHHHHHHHHhcCCCC-CchhhhHHHHhhHHHHHHHH-----------HHhhHHHHHHHHHH---HhCc
Confidence 345567899999998886655543211 11222222222211111111 34444444553222 2237
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 014509 176 EEVMQLARERLTTIVM-GFVICIFISLL 202 (423)
Q Consensus 176 ~~~~~~a~~R~~~v~i-G~~~a~~v~~~ 202 (423)
...++-.++|...-.+ |++++.+.+..
T Consensus 76 ~kiyq~~~~R~lacgi~G~vIttLy~~~ 103 (160)
T PRK09823 76 EKIYQQKIYRCLACGIGGVVITTLYCAV 103 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8899999999876554 55566666544
No 45
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=33.86 E-value=1.6e+02 Score=30.16 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 161 FILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLL 202 (423)
Q Consensus 161 ~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~ 202 (423)
+++|..+| ..+..+..+.-...|...+++|.++|+.+..+
T Consensus 44 avlTVvvv--fe~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 44 AVLTVVVV--FEPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHhhhHhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34564333 34445666777788888888888777777654
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.53 E-value=1.6e+02 Score=24.83 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhcccccc-hHHHHHHHHHHHHHHH
Q 014509 187 TTIVMGFVICIFISLLVFPIWA-GDELHDSLTSKFEHLA 224 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~i~P~~a-~~~L~~~l~~~l~~~~ 224 (423)
+..+||+++++++..+..+... ...|++.+.+.=..+.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~ 42 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELE 42 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 4567788888887776555422 2344444444444433
No 47
>COG2733 Predicted membrane protein [Function unknown]
Probab=32.71 E-value=19 Score=36.29 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014509 98 LNRGIGTILGGGLGCLAAAFAQ 119 (423)
Q Consensus 98 ~~Ri~GT~iG~~~~~~~~~~~~ 119 (423)
+-|+=||++||++|+++..+.+
T Consensus 391 ~IRiNGtvVGG~~Gllly~I~~ 412 (415)
T COG2733 391 FIRINGTVVGGIAGLLLYAISQ 412 (415)
T ss_pred EEeEcCchHHHHHHHHHHHHHh
Confidence 3478899999999999887765
No 48
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.42 E-value=1.3e+02 Score=27.21 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhHhh
Q 014509 331 SSLAWALRELGESIKK 346 (423)
Q Consensus 331 ~~~~~~L~~La~~l~~ 346 (423)
.++...|+.|.+++.+
T Consensus 163 ~e~~~~L~~l~~~f~~ 178 (199)
T PF10112_consen 163 EEIEETLDTLNQAFEK 178 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666666654
No 49
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.93 E-value=6.6e+02 Score=26.87 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014509 213 HDSLTSKFEHLARSIEGC 230 (423)
Q Consensus 213 ~~~l~~~l~~~~~~~~~~ 230 (423)
|+...+.++.+-.....+
T Consensus 20 rk~~~k~i~~Le~~k~~l 37 (560)
T PF06160_consen 20 RKRYYKEIDELEERKNEL 37 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555554444333
No 50
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=30.81 E-value=51 Score=27.41 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014509 101 GIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 101 i~GT~iG~~~~~~~~~~~ 118 (423)
++|+++|+++|.+...++
T Consensus 8 l~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 8 LFGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578999999888665544
No 51
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=30.53 E-value=5.9e+02 Score=25.81 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHhhccCCchhHHHHHHHHH-HHHHHHHHHHhhhhhhhccCCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHH
Q 014509 31 SFVREVDSKYDLRKLIHSIKVGV-ALVSVSLLYLVDPLYKQVGENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGG 109 (423)
Q Consensus 31 ~~~~~~~~~~d~~~~~~alK~~l-A~~la~~l~~~~~l~~~~~~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~ 109 (423)
+.+|.-.-+++.+.....++.++ |..+..+++.-.-. + ++.....+.-.-+.++.+....++.+|..-+.+
T Consensus 201 ~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~---l-----Ga~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~l 272 (378)
T TIGR00796 201 NAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFY---L-----GATSAAAAGDAVNGAQILSAYSQHLFGSLGSFL 272 (378)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----hcCcHhhhcccCCcHHHHHHHHHHHcchhHHHH
Confidence 44444332445566778899988 55555555432211 1 111111111111467788888999999998888
Q ss_pred HHHHHH
Q 014509 110 LGCLAA 115 (423)
Q Consensus 110 ~~~~~~ 115 (423)
+++++.
T Consensus 273 l~i~v~ 278 (378)
T TIGR00796 273 LGLIIT 278 (378)
T ss_pred HHHHHH
Confidence 887554
No 52
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=30.02 E-value=1.9e+02 Score=28.03 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014509 98 LNRGIGTILGGGLGCLAAA 116 (423)
Q Consensus 98 ~~Ri~GT~iG~~~~~~~~~ 116 (423)
..=++|.++|++.++++..
T Consensus 34 ~Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 34 WRLLLGAAIGALYSLLIFF 52 (293)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445788888888876654
No 53
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=30.00 E-value=4.6e+02 Score=27.58 Aligned_cols=27 Identities=37% Similarity=0.693 Sum_probs=15.1
Q ss_pred hcccChhHHHHH--HHHHHHHHHHHHHHH
Q 014509 85 IFEFYAGATLSK--GLNRGIGTILGGGLG 111 (423)
Q Consensus 85 v~~p~~G~t~~k--~~~Ri~GT~iG~~~~ 111 (423)
.|..+.|-.+.. +--|.+|.+.||.+|
T Consensus 53 im~ty~Gl~i~dsiaNtR~igv~~gGllg 81 (557)
T COG3275 53 IMGTYFGLHIDDSIANTRAIGVVMGGLLG 81 (557)
T ss_pred HhhceeccchhhhHHhhHHHHHHhccccc
Confidence 344444443332 335888877777664
No 54
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=29.93 E-value=2.8e+02 Score=25.94 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 014509 47 HSIKVGVALVSVSLLYLVDPL 67 (423)
Q Consensus 47 ~alK~~lA~~la~~l~~~~~l 67 (423)
+.+|.++|+.++.++.+-+++
T Consensus 4 ~l~rL~~A~~lG~lIGlERe~ 24 (225)
T PRK15385 4 YILNLLAAMLLGALIGAERQW 24 (225)
T ss_pred HHHHHHHHHHHhhhhhhhhhh
Confidence 568889999999998876654
No 55
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.00 E-value=70 Score=23.95 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014509 99 NRGIGTILGGGLGCLAAAF 117 (423)
Q Consensus 99 ~Ri~GT~iG~~~~~~~~~~ 117 (423)
.-+.||++|++++.++.++
T Consensus 51 kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 51 KWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456788888887766544
No 56
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.98 E-value=4.6e+02 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=17.0
Q ss_pred hhhcccChhHHHHHHHHHHHHHHHHHHH
Q 014509 83 VVIFEFYAGATLSKGLNRGIGTILGGGL 110 (423)
Q Consensus 83 ~vv~~p~~G~t~~k~~~Ri~GT~iG~~~ 110 (423)
-+.++|-......++. +|+++|.++
T Consensus 52 ~~ll~Pf~~g~wk~t~---~G~~igi~~ 76 (173)
T PF11085_consen 52 NFLLEPFALGDWKNTW---LGNLIGIVF 76 (173)
T ss_pred Chhhhhhhccchhhhh---HHHHHHHHH
Confidence 4678898877777665 666666543
No 57
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=26.25 E-value=5.5e+02 Score=24.21 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhh
Q 014509 281 SYPWKKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIK 323 (423)
Q Consensus 281 ~~p~~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~ 323 (423)
+....+-.++..++.-+.+.+++=..+++. +...+++..++
T Consensus 172 K~~~~~~~~v~~R~d~is~a~lAEm~hfh~--~r~~Df~~~m~ 212 (237)
T PF10456_consen 172 KMSQQEAEEVQRRCDVISYAVLAEMNHFHQ--ERVEDFKSMMK 212 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344566777777777777777665544443 22334444444
No 58
>PRK13591 ubiA prenyltransferase; Provisional
Probab=24.97 E-value=6.7e+02 Score=24.67 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=14.4
Q ss_pred CCceeeeecCCCCccchhhhhh
Q 014509 1 MGSTVIAIPDREDVAPKEKKKF 22 (423)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (423)
||..++++++++..-++.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (307)
T PRK13591 1 MGFNVFSGSFERIFKRRRKNSN 22 (307)
T ss_pred CCcceeecchHhHhhhhccccc
Confidence 7788888888766654444333
No 59
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=24.30 E-value=4.2e+02 Score=27.56 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHH-----HHHHHHHHHHHHHhhcccc
Q 014509 159 MIFILTFNLVVVSGLRAEEVMQLARERLT-----TIVMGFVICIFISLLVFPI 206 (423)
Q Consensus 159 ~i~~~T~~lV~~~~~~~~~~~~~a~~R~~-----~v~iG~~~a~~v~~~i~P~ 206 (423)
.++++-.++++++-. +-+.++.-..|.. -++.|.+..++|-++.+|.
T Consensus 573 ~i~GLl~s~~~~PYi-~Fg~~d~yrKr~~ilIs~ivf~~Lla~Lvv~fy~~~i 624 (652)
T KOG2290|consen 573 TIFGLLTSIIFLPYI-DFGDFDLYRKRFYILISQIVFSGLLAILVVVFYNYPI 624 (652)
T ss_pred HHHHHHHHHHhhccc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHheeeccc
Confidence 355555556655432 3233444455522 2233555566666656664
No 60
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=24.26 E-value=6.8e+02 Score=24.49 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcc-CCcchhhhhhhhhcccChhHHHHHHHHHHHHHHHHHHHHH
Q 014509 47 HSIKVGVALVSVSLLYLVDPLYKQVG-ENAMWAIMTVVVIFEFYAGATLSKGLNRGIGTILGGGLGC 112 (423)
Q Consensus 47 ~alK~~lA~~la~~l~~~~~l~~~~~-~~~~Wa~itv~vv~~p~~G~t~~k~~~Ri~GT~iG~~~~~ 112 (423)
+.=+.++|..++........+++.+. ....|..++++... .--.......|++++..+.....
T Consensus 58 f~~q~ala~~laG~~~~~~gl~~~~~~~~~~~l~~~~i~~~---~~~l~~~~l~rfLs~~~~~~~l~ 121 (326)
T PF14351_consen 58 FLDQLALALFLAGQILLGFGLFDLFMSSLSVWLIFALILAV---LYFLMPDRLLRFLSAFLAAIALI 121 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHH
Confidence 33445555555555444433333221 22333333322211 12223337888886666655544
No 61
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=24.15 E-value=5.8e+02 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 280 LSYPWKKYLKIGEVLRDMAANVLSVKGCLQ 309 (423)
Q Consensus 280 ~~~p~~~y~~i~~~lr~l~~~~~~L~~~~~ 309 (423)
.+++.+.+..+.+.+..+++.+...+..+.
T Consensus 75 lP~~R~Dil~L~~~~D~i~D~~ed~A~~l~ 104 (217)
T COG1392 75 LPFDREDILELIESQDDIADAAEDAAKLLL 104 (217)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888777777766555443
No 62
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=23.89 E-value=2.3e+02 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 014509 394 SLMEMVDKVEELTKEVEELGGLAGFH 419 (423)
Q Consensus 394 ll~~~~~~l~~l~~~v~~L~~~a~f~ 419 (423)
.++.++..+|++.+...++++.+.+.
T Consensus 80 ~~~~i~~~lErigD~~~~ia~~~~~~ 105 (212)
T TIGR02135 80 SIIKISSDLERIGDYAVNIAKRALRL 105 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45588899999999888888776654
No 63
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.66 E-value=1.1e+03 Score=26.58 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 014509 189 IVMGFVICIFISLLVFPIWAGDELHDSLTSKFEHLARSIEGC 230 (423)
Q Consensus 189 v~iG~~~a~~v~~~i~P~~a~~~L~~~l~~~l~~~~~~~~~~ 230 (423)
+++|++++++.+-.+.- .-+.....+.+.++++..++...
T Consensus 153 il~g~i~aF~~n~~l~~--~v~~~~~~~~~~~~Dl~~~l~~~ 192 (806)
T PF05478_consen 153 ILFGVICAFVANQQLST--GVDDTPNTVNSTLDDLRTFLNDT 192 (806)
T ss_pred HHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHhh
Confidence 46688887777764321 23344566666666666665544
No 64
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=23.64 E-value=6.2e+02 Score=23.77 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 179 MQLARERLTTIVMGFVICIFISLLVF 204 (423)
Q Consensus 179 ~~~a~~R~~~v~iG~~~a~~v~~~i~ 204 (423)
+.....=+..-++|++++.+||.++.
T Consensus 142 ls~l~~~l~~aligLiiasvvn~Fl~ 167 (233)
T COG0670 142 LSSLGSFLFMALIGLIIASLVNIFLG 167 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444445667789999999998754
No 65
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.64 E-value=6e+02 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhh
Q 014509 96 KGLNRGIGTILGGGLGCLAA-AFAQ 119 (423)
Q Consensus 96 k~~~Ri~GT~iG~~~~~~~~-~~~~ 119 (423)
+.+-|++=+++|+++|+... .+..
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~ 27 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLA 27 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHh
Confidence 45678888999999999655 4433
No 66
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=23.55 E-value=3.2e+02 Score=25.90 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHH--HHhhhhhhhccCCcchhhhhhhhhcc----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014509 48 SIKVGVALVSVSLL--YLVDPLYKQVGENAMWAIMTVVVIFE----FYAGATLSKGLNRGIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 48 alK~~lA~~la~~l--~~~~~l~~~~~~~~~Wa~itv~vv~~----p~~G~t~~k~~~Ri~GT~iG~~~~~~~~~~~ 118 (423)
++|..++..+...+ ..+.|.. .-|.+|.|..+-+.+++- .-..+.-+|...=+.||++|.+++.++.++.
T Consensus 22 G~~sllsL~~n~~~i~~~~i~~~-~~G~~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~~~~~l~~~~ 97 (244)
T PF07907_consen 22 GLRSLLSLIFNFLIIFFVLIPLI-LNGYNPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVLLAGILALLV 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444332 2233331 122578886544433222 3455667788888888888888777655444
No 67
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=23.30 E-value=7.2e+02 Score=24.40 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=4.2
Q ss_pred cchhhhhhh
Q 014509 75 AMWAIMTVV 83 (423)
Q Consensus 75 ~~Wa~itv~ 83 (423)
|.|...-+.
T Consensus 27 p~w~~~~~~ 35 (325)
T PF11992_consen 27 PLWVIVFFA 35 (325)
T ss_pred hHHHHHHHH
Confidence 456544433
No 68
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=23.21 E-value=8.4e+02 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014509 160 IFILTFNLVVVSGLRAEEVMQLARERLTTIVMGFVICIFISLL 202 (423)
Q Consensus 160 i~~~T~~lV~~~~~~~~~~~~~a~~R~~~v~iG~~~a~~v~~~ 202 (423)
++..|..++.+. ..+.-...|...+++|+++++++..+
T Consensus 175 ~a~~~l~~il~~-----~~~~~g~~~~~svLiGiv~G~v~a~~ 212 (433)
T PRK11412 175 LSVAVMCLVLAM-----IIFLPQRIARYSLLVGTIVGWILWAF 212 (433)
T ss_pred HHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555444332 23455678999999999999998543
No 69
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=3.6e+02 Score=22.96 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhcccccchH--HHHHHHHHHHHH
Q 014509 187 TTIVMGFVICIFISLLVFPIWAGD--ELHDSLTSKFEH 222 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~i~P~~a~~--~L~~~l~~~l~~ 222 (423)
+..++|+++++++..+ -|...+. .+.+.+.+.=..
T Consensus 13 igLvvGi~IG~li~Rl-t~~~~k~q~~~q~ELe~~K~~ 49 (138)
T COG3105 13 IGLVVGIIIGALIARL-TNRKLKQQQKLQYELEKVKAQ 49 (138)
T ss_pred HHHHHHHHHHHHHHHH-cchhhhhHHHHHHHHHHHHHH
Confidence 4556788888887775 5655555 444444433333
No 70
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.50 E-value=5.2e+02 Score=24.40 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHH-ccCCchHHH
Q 014509 101 GIGTILGGGLGCLAAAFAQDVGGIGNSIVVGISVFISGAAATYMRLVPRIKKRYEYGTMIFILTFNLVVV-SGLRAEEVM 179 (423)
Q Consensus 101 i~GT~iG~~~~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~y~y~~~i~~~T~~lV~~-~~~~~~~~~ 179 (423)
+.||++|+++--++..+....+ ..+|+.+++..-+. -|-+++.-+.+++.. ++. .++..
T Consensus 149 i~GTvfGtiffsllas~~a~~~-~fhP~ALAMasGvG------------------SgSMMaAa~~aL~~~~P~~-a~~i~ 208 (241)
T PF11299_consen 149 IIGTVFGTIFFSLLASLLASLG-IFHPYALAMASGVG------------------SGSMMAAASGALAAAYPEM-ADQIL 208 (241)
T ss_pred eehhhHHHHHHHHHHHHHHhcc-CCCHHHHHHHcCCc------------------HHHHHHHHHHHHHHHCcch-HHHHH
Confidence 6899999887554444333222 24566554432221 122233333334332 222 22332
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHh
Q 014509 180 Q-LARERLTTIVMGFVICIFISL 201 (423)
Q Consensus 180 ~-~a~~R~~~v~iG~~~a~~v~~ 201 (423)
. -+..-+.+.+.|+-+++++..
T Consensus 209 A~AaaSNllt~~~G~Y~~ifiaL 231 (241)
T PF11299_consen 209 AFAAASNLLTSVTGLYMSIFIAL 231 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 234556666777777776653
No 71
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=21.24 E-value=5.3e+02 Score=29.15 Aligned_cols=17 Identities=18% Similarity=0.665 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhccc
Q 014509 189 IVMGFVICIFISLLVFP 205 (423)
Q Consensus 189 v~iG~~~a~~v~~~i~P 205 (423)
+.+|++++++++.++.|
T Consensus 837 ~~~gi~~~l~~~l~~lP 853 (862)
T TIGR03480 837 LSLGLGLTLLCTLIFLP 853 (862)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555444
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.74 E-value=1e+03 Score=25.36 Aligned_cols=30 Identities=33% Similarity=0.291 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 387 ELASFVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 387 ~~~~~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
.....-..+....++++++.+.++++...|
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li~~A 495 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELIDNA 495 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888888777654
No 73
>PTZ00370 STEVOR; Provisional
Probab=20.69 E-value=3.8e+02 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=9.4
Q ss_pred hhhhhhhhcccChhHHHHHHH
Q 014509 78 AIMTVVVIFEFYAGATLSKGL 98 (423)
Q Consensus 78 a~itv~vv~~p~~G~t~~k~~ 98 (423)
..++.+..+....+.++..++
T Consensus 211 ~C~SSIsIfNMF~~~Sm~sA~ 231 (296)
T PTZ00370 211 KCASSISIFNMLSEESIISAL 231 (296)
T ss_pred HHhhhhheeecCChhHHHHHH
Confidence 333444444444444444443
No 74
>COG4291 Predicted membrane protein [Function unknown]
Probab=20.55 E-value=5e+02 Score=23.95 Aligned_cols=18 Identities=33% Similarity=0.126 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014509 101 GIGTILGGGLGCLAAAFA 118 (423)
Q Consensus 101 i~GT~iG~~~~~~~~~~~ 118 (423)
+.+..+|+++++++..-.
T Consensus 24 f~~a~lg~vlall~~~~~ 41 (228)
T COG4291 24 FAIAALGGVLALLLALAL 41 (228)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456778888888665443
No 75
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=20.34 E-value=4.7e+02 Score=21.12 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 014509 187 TTIVMGFVICIFISLL 202 (423)
Q Consensus 187 ~~v~iG~~~a~~v~~~ 202 (423)
.++.+|.++|++.-.+
T Consensus 82 ~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 82 IETVIGLIIALLIYLL 97 (99)
T ss_pred ehhhhhHHHHHHHHHH
Confidence 5678899999887554
No 76
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=20.24 E-value=53 Score=22.11 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 014509 103 GTILGGGLGCLAA 115 (423)
Q Consensus 103 GT~iG~~~~~~~~ 115 (423)
||++|++.+-++-
T Consensus 2 G~~~Ga~~Ga~~G 14 (42)
T PF05433_consen 2 GALIGAAVGAVAG 14 (42)
T ss_pred chHHHHHHHHHHH
Confidence 4455555544443
No 77
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=20.24 E-value=9.9e+02 Score=24.90 Aligned_cols=29 Identities=17% Similarity=-0.042 Sum_probs=22.2
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 87 EFYAGATLSKGLNRGIGTILGGGLGCLAA 115 (423)
Q Consensus 87 ~p~~G~t~~k~~~Ri~GT~iG~~~~~~~~ 115 (423)
+-+.|--..+...-+.|++.|++.|.+.-
T Consensus 94 KIsFgfIpi~l~G~LFGP~~G~l~g~lsD 122 (477)
T PRK12821 94 RVTLELILVKISGLLFGPIIGIFSAATID 122 (477)
T ss_pred EEehhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34567777777888899999999988543
No 78
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=20.13 E-value=3.9e+02 Score=27.75 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 014509 100 RGIGTILGGGL 110 (423)
Q Consensus 100 Ri~GT~iG~~~ 110 (423)
=+.||.+|+..
T Consensus 27 ~l~GTAIGAGm 37 (443)
T PRK13629 27 GLFGTAIGAGV 37 (443)
T ss_pred HHHHHHHhHHH
Confidence 35777777644
Done!