Query 014509
Match_columns 423
No_of_seqs 281 out of 1674
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olt_A Hypothetical protein; s 29.2 2.8E+02 0.0097 24.0 14.2 22 393-414 197-218 (227)
2 3ne5_A Cation efflux system pr 28.9 2.9E+02 0.01 30.3 11.4 21 186-206 1020-1040(1054)
3 1xrd_A LH-1, light-harvesting 26.7 37 0.0013 23.0 2.1 28 34-62 2-29 (52)
4 4dx5_A Acriflavine resistance 25.9 4.1E+02 0.014 29.1 11.8 21 186-206 1004-1024(1057)
5 2i0m_A Phosphate transport sys 24.7 3.2E+02 0.011 23.2 12.4 26 391-416 179-204 (216)
6 1xwm_A PHOU, phosphate uptake 23.6 3.2E+02 0.011 23.3 8.6 26 391-416 179-204 (217)
7 4dx5_A Acriflavine resistance 22.6 7.7E+02 0.026 26.9 16.3 20 186-205 471-490 (1057)
8 1p68_A De novo designed protei 21.0 2.2E+02 0.0075 20.6 5.5 24 289-312 4-27 (102)
9 1sum_B Phosphate transport sys 17.0 5E+02 0.017 22.4 11.0 26 391-416 179-204 (235)
10 3iyz_A Aquaporin-4; water tran 15.0 7.4E+02 0.025 23.4 10.2 24 93-116 128-151 (340)
No 1
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=29.15 E-value=2.8e+02 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014509 393 FSLMEMVDKVEELTKEVEELGG 414 (423)
Q Consensus 393 ~ll~~~~~~l~~l~~~v~~L~~ 414 (423)
..+.++++.|+++++..+..|.
T Consensus 197 i~~~ei~~~lE~i~D~~e~vA~ 218 (227)
T 2olt_A 197 MFLYKTIEWVGGLADLAERVGS 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888888887765
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=28.95 E-value=2.9e+02 Score=30.28 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 014509 186 LTTIVMGFVICIFISLLVFPI 206 (423)
Q Consensus 186 ~~~v~iG~~~a~~v~~~i~P~ 206 (423)
...+++|++++++++.++-|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 356778888999999888884
No 3
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=26.72 E-value=37 Score=23.01 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=19.4
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHH
Q 014509 34 REVDSKYDLRKLIHSIKVGVALVSVSLLY 62 (423)
Q Consensus 34 ~~~~~~~d~~~~~~alK~~lA~~la~~l~ 62 (423)
.|+|...||+++.-++=+.+.+ ++.++-
T Consensus 2 ~kIWl~fDPrr~Lva~~~fl~v-lAl~IH 29 (52)
T 1xrd_A 2 WRIWQLFDPRQALVGLATFLFV-LALLIH 29 (52)
T ss_dssp GGGGGTSSHHHHHHHHHHHHHH-HHHHHH
T ss_pred ceEEEEEchhHHHHHHHHHHHH-HHHHHH
Confidence 4678889999998888775443 444443
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.85 E-value=4.1e+02 Score=29.12 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 014509 186 LTTIVMGFVICIFISLLVFPI 206 (423)
Q Consensus 186 ~~~v~iG~~~a~~v~~~i~P~ 206 (423)
...+++|++++++++.++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888887774
No 5
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=24.74 E-value=3.2e+02 Score=23.20 Aligned_cols=26 Identities=4% Similarity=0.064 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
.+..++.++..+|++.+.....++..
T Consensus 179 ~~~~~~~i~~~lERI~Dha~nIae~v 204 (216)
T 2i0m_A 179 NGTQYLYIIGHLERFADYIANICERL 204 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888888888777776644
No 6
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=23.58 E-value=3.2e+02 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
.+..++.++..+|++.+.....++..
T Consensus 179 ~~~~~~~i~~~lERI~Dha~nIae~v 204 (217)
T 1xwm_A 179 QMNVLALVARYIERTADHATNIAEHL 204 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888777776543
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=22.63 E-value=7.7e+02 Score=26.85 Aligned_cols=20 Identities=25% Similarity=0.570 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 014509 186 LTTIVMGFVICIFISLLVFP 205 (423)
Q Consensus 186 ~~~v~iG~~~a~~v~~~i~P 205 (423)
...+++|++++++++.++.|
T Consensus 471 a~~~~~gl~~s~~~~l~~~P 490 (1057)
T 4dx5_A 471 SITIVSAMALSVLVALILTP 490 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888887777
No 8
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=20.96 E-value=2.2e+02 Score=20.63 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCc
Q 014509 289 KIGEVLRDMAANVLSVKGCLQSPR 312 (423)
Q Consensus 289 ~i~~~lr~l~~~~~~L~~~~~~~~ 312 (423)
++.+.+..+...+..|+..++...
T Consensus 4 klndlledlqevlknlhknwhggk 27 (102)
T 1p68_A 4 KLNDLLEDLQEVLKNLHKNWHGGK 27 (102)
T ss_dssp THHHHHHHHHHHHHHHHTTSSSCS
T ss_pred hHHHHHHHHHHHHHHHHhcccCCc
Confidence 334444445444555555554433
No 9
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=17.00 E-value=5e+02 Score=22.39 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
.+..++.++..+|++.+.....++..
T Consensus 179 ~~~~~l~i~~~lERI~Dha~nIae~v 204 (235)
T 1sum_B 179 RALLLLEIAGNIEIIADYATNIVEVS 204 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777787777777666543
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=14.95 E-value=7.4e+02 Score=23.37 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014509 93 TLSKGLNRGIGTILGGGLGCLAAA 116 (423)
Q Consensus 93 t~~k~~~Ri~GT~iG~~~~~~~~~ 116 (423)
.+.+....+++-++|+++|.++.+
T Consensus 128 ~~~~~~~YiiAQ~lGA~~GA~lv~ 151 (340)
T 3iyz_A 128 SIAKSVFYITAQCLGAIIGAGILY 151 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777765443
Done!