Query 014509
Match_columns 423
No_of_seqs 281 out of 1674
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 12:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014509.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014509hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 45.4 5.7 0.00041 25.2 2.1 26 34-59 2-27 (52)
2 d1vcta1 a.7.12.1 (A:9-107) Hyp 29.0 63 0.0046 22.5 6.3 25 393-417 71-95 (99)
3 d1o9ra_ a.25.1.1 (A:) Dodecame 22.1 1.5E+02 0.011 22.3 8.8 66 282-351 10-80 (162)
4 d1xwma_ a.7.12.1 (A:) Phosphat 14.3 2.6E+02 0.019 21.6 11.9 26 393-418 178-203 (212)
5 d1sumb_ a.7.12.1 (B:) PhoU hom 13.4 2.9E+02 0.021 21.7 10.3 28 391-418 178-205 (225)
6 d1t72a_ a.7.12.1 (A:) Phosphat 12.4 1.5E+02 0.011 23.3 5.7 26 391-416 83-108 (215)
7 d1tqga_ a.24.10.3 (A:) Chemota 10.7 1.8E+02 0.013 20.0 5.0 21 390-410 84-104 (105)
8 d1sumb_ a.7.12.1 (B:) PhoU hom 10.6 2.1E+02 0.015 22.6 6.2 26 391-416 78-103 (225)
9 d1b3qa1 a.30.2.1 (A:293-354) H 10.3 81 0.0059 20.2 2.5 15 399-413 8-22 (62)
10 d1ji4a_ a.25.1.1 (A:) Dodecame 9.9 3.1E+02 0.022 19.8 8.4 113 285-417 2-114 (144)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=45.44 E-value=5.7 Score=25.22 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=19.5
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHH
Q 014509 34 REVDSKYDLRKLIHSIKVGVALVSVS 59 (423)
Q Consensus 34 ~~~~~~~d~~~~~~alK~~lA~~la~ 59 (423)
.|+|..+|||+..-|+-+.+.+....
T Consensus 2 ~kiW~~fDPRr~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 2 WRIWQLFDPRQALVGLATFLFVLALL 27 (52)
T ss_dssp GGGGGTSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeEecHHHHHHHHHHHHHHHHHH
Confidence 46888899999988887776654433
No 2
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.02 E-value=63 Score=22.49 Aligned_cols=25 Identities=8% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 014509 393 FSLMEMVDKVEELTKEVEELGGLAG 417 (423)
Q Consensus 393 ~ll~~~~~~l~~l~~~v~~L~~~a~ 417 (423)
..++.++..+|++.+...++|+..-
T Consensus 71 ~~~~~i~~~lERIgDha~nIae~vi 95 (99)
T d1vcta1 71 ITILQIANAIEDISNAAGDLAKMVL 95 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999887653
No 3
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=22.06 E-value=1.5e+02 Score=22.29 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHh----hccCCc-cccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHhhccCCC
Q 014509 282 YPWKKYLKIGEVLRDMAANVLSVKG----CLQSPR-QSLQNLRASIKEPCEIVGSSLAWALRELGESIKKMNKCE 351 (423)
Q Consensus 282 ~p~~~y~~i~~~lr~l~~~~~~L~~----~~~~~~-~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~l~~~~~~~ 351 (423)
-|.+...++.+.+.++......|.. +.+... .....+.. .++....+.....+.+++.+......|
T Consensus 10 l~~~~~~~~~~~Ln~~La~~~~l~~k~~~~HWnv~G~~F~~lH~----~~~~~~~~~~~~~D~iAERi~~LG~~p 80 (162)
T d1o9ra_ 10 LPSNAKSTVIGILNESLASVIDLALVTKQAHWNLKGPQFIAVHE----LLDTFRTQLDNHGDTIAERVVQLGGTA 80 (162)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeCCChHHHHH----hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3455666666666664433333322 222111 11112222 234556667788888888888755444
No 4
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.26 E-value=2.6e+02 Score=21.57 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Q 014509 393 FSLMEMVDKVEELTKEVEELGGLAGF 418 (423)
Q Consensus 393 ~ll~~~~~~l~~l~~~v~~L~~~a~f 418 (423)
..++.++..||++.+-..+.|+..-|
T Consensus 178 ~~~~~i~r~LERIgDh~~nIae~vif 203 (212)
T d1xwma_ 178 NVLALVARYIERTADHATNIAEHLVY 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888899999988888876544
No 5
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=13.42 E-value=2.9e+02 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLAGF 418 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a~f 418 (423)
.+..++.++..||++.+-....++..-|
T Consensus 178 ~~~~~~~i~~~lERIgDh~~nIaE~v~y 205 (225)
T d1sumb_ 178 RALLLLEIAGNIEIIADYATNIVEVSVY 205 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668888899998888888765433
No 6
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=12.39 E-value=1.5e+02 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
++...+.++.++|++.+...++++.+
T Consensus 83 ~~~~~~~i~~~lERIgD~a~~ia~~~ 108 (215)
T d1t72a_ 83 MIMGIYKIVSDLERMGDEAENIAERA 108 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456678888888888888777654
No 7
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.70 E-value=1.8e+02 Score=19.99 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014509 390 SFVFSLMEMVDKVEELTKEVE 410 (423)
Q Consensus 390 ~~~~ll~~~~~~l~~l~~~v~ 410 (423)
....++.+.++.++.+.+.++
T Consensus 84 ~~~~~l~~~~d~l~~~l~~l~ 104 (105)
T d1tqga_ 84 DLLDKIFAGVDMITRMVDKIV 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455577788888888877664
No 8
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=10.59 E-value=2.1e+02 Score=22.57 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014509 391 FVFSLMEMVDKVEELTKEVEELGGLA 416 (423)
Q Consensus 391 ~~~ll~~~~~~l~~l~~~v~~L~~~a 416 (423)
.....+.++.++|++.+....+++.+
T Consensus 78 ~i~~~l~i~~dlERIgD~a~~Ia~~~ 103 (225)
T d1sumb_ 78 TVTAGIRVAELIENIADKCHDIAKNV 103 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888877644
No 9
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=10.30 E-value=81 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHh
Q 014509 399 VDKVEELTKEVEELG 413 (423)
Q Consensus 399 ~~~l~~l~~~v~~L~ 413 (423)
+++|++|++.|.||+
T Consensus 8 ~~kLD~LmnlvGELv 22 (62)
T d1b3qa1 8 IEKLDNLMDLMGELV 22 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888888886
No 10
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}
Probab=9.87 E-value=3.1e+02 Score=19.83 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHhhhHHHHHHHHHHHHHHHHHHhHhhccCCCccccchhhHHHHH
Q 014509 285 KKYLKIGEVLRDMAANVLSVKGCLQSPRQSLQNLRASIKEPCEIVGSSLAWALRELGESIKKMNKCETAGLIMPKLKSIR 364 (423)
Q Consensus 285 ~~y~~i~~~lr~l~~~~~~L~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~L~~La~~l~~~~~~~~~~~~~~~~~~a~ 364 (423)
+.++.+...+..+...-.....+.+...-.--.--+.+ ++....++....+.+++.++.....|+..
T Consensus 2 k~~~~L~~~lA~~~~l~~~~~~~HWnv~G~~F~~lH~~---f~e~y~~~~~~~D~iAERi~~LG~~p~~~---------- 68 (144)
T d1ji4a_ 2 KTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKA---TEEIYEEFADMFDDLAERIVQLGHHPLVT---------- 68 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHEESTTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCCCCS----------
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhccceeCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCcC----------
Q ss_pred HHHhhhcCccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014509 365 HELNLIITPSALASVEKSTDALELASFVFSLMEMVDKVEELTKEVEELGGLAG 417 (423)
Q Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~l~~l~~~v~~L~~~a~ 417 (423)
+...+ +...++. ........-..+.++++..+.+.+.+.++.+.|+
T Consensus 69 --~~~~~---~~s~i~~--~~~~~~~~~~ml~~l~~~~~~~~~~~~~~~~~a~ 114 (144)
T d1ji4a_ 69 --LSEAI---KLTRVKE--ETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAE 114 (144)
T ss_dssp --HHHHH---HHCCSCC--CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHH---HhcCCcc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!