Query 014511
Match_columns 423
No_of_seqs 551 out of 3296
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 3.5E-48 7.5E-53 374.6 34.6 312 2-315 41-356 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 1.1E-47 2.4E-52 339.7 24.1 252 62-315 40-298 (300)
3 PRK13232 nifH nitrogenase redu 100.0 2.6E-34 5.6E-39 269.9 22.1 233 69-312 1-248 (273)
4 CHL00175 minD septum-site dete 100.0 4.2E-34 9E-39 269.8 23.3 238 63-311 9-255 (281)
5 TIGR01969 minD_arch cell divis 100.0 5.2E-34 1.1E-38 265.0 22.8 227 70-312 1-234 (251)
6 COG2894 MinD Septum formation 100.0 2.9E-34 6.3E-39 245.5 14.0 230 68-311 1-248 (272)
7 PRK13235 nifH nitrogenase redu 100.0 3E-33 6.6E-38 262.8 22.3 233 69-311 1-249 (274)
8 TIGR03371 cellulose_yhjQ cellu 100.0 1.8E-33 4E-38 260.5 17.7 234 69-312 1-245 (246)
9 PRK13233 nifH nitrogenase redu 100.0 4.2E-33 9.1E-38 262.1 20.0 233 68-311 1-250 (275)
10 PRK13236 nitrogenase reductase 100.0 5.6E-33 1.2E-37 262.7 20.7 234 69-313 6-255 (296)
11 cd02040 NifH NifH gene encodes 100.0 1.5E-32 3.2E-37 258.0 20.3 234 69-314 1-251 (270)
12 CHL00072 chlL photochlorophyll 100.0 5.4E-32 1.2E-36 254.6 23.8 223 72-311 3-246 (290)
13 PRK10818 cell division inhibit 100.0 2.9E-32 6.3E-37 255.9 21.4 231 68-310 1-248 (270)
14 PRK13230 nitrogenase reductase 100.0 3.3E-32 7.1E-37 256.4 20.2 234 69-313 1-250 (279)
15 COG0455 flhG Antiactivator of 100.0 4.9E-32 1.1E-36 248.3 20.7 233 68-313 1-243 (262)
16 PRK13234 nifH nitrogenase redu 100.0 2.3E-32 5E-37 258.3 19.1 233 68-312 3-252 (295)
17 PRK13185 chlL protochlorophyll 100.0 5.3E-32 1.2E-36 254.0 21.3 229 68-313 1-250 (270)
18 TIGR01968 minD_bact septum sit 100.0 8.5E-32 1.9E-36 251.5 21.0 229 69-310 1-238 (261)
19 COG0489 Mrp ATPases involved i 100.0 7.9E-32 1.7E-36 249.3 19.5 204 67-280 55-263 (265)
20 TIGR01287 nifH nitrogenase iro 100.0 2.9E-31 6.2E-36 249.7 20.9 233 70-313 1-249 (275)
21 PRK10037 cell division protein 100.0 1.1E-31 2.3E-36 248.8 17.4 230 69-318 1-245 (250)
22 PRK13869 plasmid-partitioning 100.0 8.2E-32 1.8E-36 264.3 17.5 228 68-305 120-384 (405)
23 TIGR01281 DPOR_bchL light-inde 100.0 2.2E-31 4.9E-36 249.5 19.6 228 71-314 2-249 (268)
24 PRK13231 nitrogenase reductase 100.0 2.4E-31 5.2E-36 248.7 19.4 233 69-312 2-242 (264)
25 cd02032 Bchl_like This family 100.0 1.3E-30 2.7E-35 244.2 21.2 225 70-311 1-246 (267)
26 cd02037 MRP-like MRP (Multiple 100.0 4.1E-30 8.9E-35 224.0 18.9 167 71-276 1-169 (169)
27 COG1192 Soj ATPases involved i 100.0 1.6E-30 3.4E-35 242.6 15.8 237 68-315 1-257 (259)
28 PF06564 YhjQ: YhjQ protein; 100.0 3.2E-30 7E-35 231.6 16.7 228 69-314 1-241 (243)
29 PHA02518 ParA-like protein; Pr 100.0 6E-30 1.3E-34 231.4 18.0 204 70-313 1-210 (211)
30 TIGR03453 partition_RepA plasm 100.0 4.7E-30 1E-34 252.1 18.5 234 67-310 102-372 (387)
31 PRK13705 plasmid-partitioning 100.0 1.5E-29 3.3E-34 246.7 17.5 238 67-313 104-381 (388)
32 PHA02519 plasmid partition pro 100.0 2.8E-29 6.1E-34 244.2 18.3 237 67-312 104-380 (387)
33 TIGR03815 CpaE_hom_Actino heli 100.0 1.7E-28 3.7E-33 235.7 20.8 219 66-306 90-320 (322)
34 cd02036 MinD Bacterial cell di 100.0 1.1E-28 2.5E-33 217.1 17.7 179 71-301 1-179 (179)
35 cd02117 NifH_like This family 100.0 3.3E-28 7.1E-33 219.9 19.5 194 70-275 1-212 (212)
36 cd02033 BchX Chlorophyllide re 100.0 1.2E-27 2.7E-32 226.2 23.7 226 67-313 29-277 (329)
37 TIGR02016 BchX chlorophyllide 100.0 9.2E-28 2E-32 226.4 20.0 230 70-314 1-254 (296)
38 PF06155 DUF971: Protein of un 100.0 4.2E-29 9.2E-34 192.1 7.4 87 322-409 2-89 (89)
39 COG1149 MinD superfamily P-loo 100.0 1.1E-26 2.4E-31 206.7 20.5 225 69-310 1-282 (284)
40 COG3640 CooC CO dehydrogenase 99.9 6.5E-25 1.4E-29 191.2 20.4 219 71-310 2-252 (255)
41 cd03110 Fer4_NifH_child This p 99.9 1.5E-25 3.2E-30 197.3 16.2 178 71-273 1-179 (179)
42 PRK13849 putative crown gall t 99.9 2.4E-25 5.2E-30 202.3 17.3 204 69-308 1-215 (231)
43 TIGR01007 eps_fam capsular exo 99.9 3.5E-25 7.6E-30 199.0 16.1 170 69-244 17-194 (204)
44 TIGR03018 pepcterm_TyrKin exop 99.9 3.7E-25 8.1E-30 199.0 16.0 164 67-238 33-207 (207)
45 TIGR03029 EpsG chain length de 99.9 2E-24 4.4E-29 203.0 16.7 167 66-239 100-274 (274)
46 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 5.7E-24 1.2E-28 189.7 10.8 190 72-280 1-195 (195)
47 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 7.7E-23 1.7E-27 183.1 17.1 232 70-312 1-249 (273)
48 COG1348 NifH Nitrogenase subun 99.9 2.5E-22 5.5E-27 173.9 18.8 233 69-312 1-250 (278)
49 TIGR01005 eps_transp_fam exopo 99.9 1.4E-22 3E-27 215.9 15.0 172 67-244 544-722 (754)
50 cd03111 CpaE_like This protein 99.9 1.9E-21 4.1E-26 155.3 12.8 102 71-239 1-106 (106)
51 PRK09841 cryptic autophosphory 99.9 4E-21 8.8E-26 202.6 17.6 170 67-242 529-705 (726)
52 PRK11519 tyrosine kinase; Prov 99.9 4.3E-21 9.4E-26 202.2 16.9 167 67-241 524-699 (719)
53 cd02038 FleN-like FleN is a me 99.9 3.8E-21 8.3E-26 161.6 12.8 108 71-242 1-109 (139)
54 COG4963 CpaE Flp pilus assembl 99.9 1.7E-20 3.6E-25 175.8 17.3 232 66-313 101-346 (366)
55 cd00550 ArsA_ATPase Oxyanion-t 99.9 1E-21 2.2E-26 181.8 8.6 203 72-275 2-239 (254)
56 COG3536 Uncharacterized protei 99.8 1.2E-20 2.5E-25 141.9 8.3 91 319-412 4-95 (120)
57 PF07015 VirC1: VirC1 protein; 99.8 1E-19 2.2E-24 161.1 14.5 145 69-241 1-151 (231)
58 PF09140 MipZ: ATPase MipZ; I 99.8 2.6E-21 5.5E-26 171.6 3.0 208 70-292 1-232 (261)
59 cd02035 ArsA ArsA ATPase funct 99.8 2.5E-20 5.3E-25 168.8 8.5 165 72-242 1-182 (217)
60 cd02042 ParA ParA and ParB of 99.8 2.1E-19 4.5E-24 143.4 12.6 99 71-238 1-104 (104)
61 TIGR02409 carnitine_bodg gamma 99.8 6.4E-20 1.4E-24 178.8 6.9 80 332-412 2-82 (366)
62 PF13614 AAA_31: AAA domain; P 99.7 3.3E-18 7.2E-23 147.1 8.0 141 70-216 1-156 (157)
63 PF02374 ArsA_ATPase: Anion-tr 99.7 7E-18 1.5E-22 159.6 10.7 196 70-274 2-285 (305)
64 TIGR02410 carnitine_TMLD trime 99.7 5.3E-18 1.1E-22 164.8 4.9 67 344-411 1-70 (362)
65 KOG3888 Gamma-butyrobetaine,2- 99.7 2.7E-17 5.8E-22 150.4 3.8 84 327-411 23-107 (407)
66 COG0003 ArsA Predicted ATPase 99.7 1.4E-15 3E-20 143.3 14.3 193 71-275 3-285 (322)
67 PF10609 ParA: ParA/MinD ATPas 99.6 1.5E-15 3.3E-20 111.7 8.1 78 178-255 2-81 (81)
68 TIGR00064 ftsY signal recognit 99.6 5.3E-14 1.2E-18 131.0 15.6 169 67-271 70-250 (272)
69 KOG3889 Predicted gamma-butyro 99.6 2.9E-15 6.3E-20 132.2 4.9 71 343-414 18-88 (371)
70 cd03114 ArgK-like The function 99.5 2E-13 4.4E-18 115.5 14.4 143 72-240 2-147 (148)
71 PRK10867 signal recognition pa 99.5 6.1E-13 1.3E-17 130.6 17.3 167 69-271 100-273 (433)
72 cd03115 SRP The signal recogni 99.5 2.3E-12 4.9E-17 112.6 15.3 162 74-270 4-171 (173)
73 KOG2825 Putative arsenite-tran 99.4 3.1E-13 6.8E-18 118.8 8.7 177 66-244 15-267 (323)
74 PRK13886 conjugal transfer pro 99.4 2.3E-12 5E-17 116.3 14.3 48 68-115 1-48 (241)
75 TIGR00959 ffh signal recogniti 99.4 3E-12 6.5E-17 125.8 16.2 167 70-271 99-272 (428)
76 cd02034 CooC The accessory pro 99.4 5.4E-13 1.2E-17 107.8 9.0 109 75-207 4-115 (116)
77 PRK10416 signal recognition pa 99.4 8.2E-12 1.8E-16 118.7 16.3 168 68-271 113-292 (318)
78 cd01983 Fer4_NifH The Fer4_Nif 99.4 3.8E-12 8.3E-17 99.6 11.5 93 74-238 3-99 (99)
79 TIGR01425 SRP54_euk signal rec 99.4 9.8E-12 2.1E-16 121.4 16.3 167 68-270 99-271 (429)
80 PRK00090 bioD dithiobiotin syn 99.4 5.5E-12 1.2E-16 114.8 11.4 193 72-274 2-201 (222)
81 PRK00771 signal recognition pa 99.4 2.4E-11 5.2E-16 119.8 16.5 166 68-271 94-265 (437)
82 TIGR00347 bioD dethiobiotin sy 99.3 1.4E-11 3.1E-16 106.8 11.7 155 74-238 2-166 (166)
83 COG0541 Ffh Signal recognition 99.3 4.5E-11 9.7E-16 114.2 15.2 198 21-270 68-271 (451)
84 PRK11889 flhF flagellar biosyn 99.3 7.8E-11 1.7E-15 112.6 15.1 163 69-271 241-410 (436)
85 PRK13768 GTPase; Provisional 99.3 2.9E-11 6.2E-16 111.9 10.6 45 68-113 1-45 (253)
86 PRK01077 cobyrinic acid a,c-di 99.2 5E-10 1.1E-14 112.3 16.3 203 68-311 2-216 (451)
87 PRK12726 flagellar biosynthesi 99.2 6.2E-10 1.3E-14 106.2 15.9 164 69-271 206-375 (407)
88 cd03109 DTBS Dethiobiotin synt 99.2 9.6E-10 2.1E-14 91.5 14.9 125 74-273 4-134 (134)
89 PRK14974 cell division protein 99.1 1E-09 2.2E-14 104.7 15.2 167 69-271 140-312 (336)
90 PRK12724 flagellar biosynthesi 99.1 9.3E-10 2E-14 106.7 12.8 159 70-271 224-392 (432)
91 TIGR00345 arsA arsenite-activa 99.1 8E-10 1.7E-14 104.1 11.6 74 202-275 190-267 (284)
92 PRK05703 flhF flagellar biosyn 99.1 7.7E-10 1.7E-14 109.4 11.3 161 69-271 221-390 (424)
93 PF00448 SRP54: SRP54-type pro 99.1 3.3E-09 7.2E-14 94.0 13.3 166 69-270 1-172 (196)
94 PRK12374 putative dithiobiotin 99.0 8.3E-09 1.8E-13 94.3 15.8 195 68-276 1-204 (231)
95 PRK12727 flagellar biosynthesi 99.0 5.4E-09 1.2E-13 103.9 15.4 158 69-270 350-516 (559)
96 PF13500 AAA_26: AAA domain; P 99.0 1.8E-09 3.8E-14 96.5 10.3 188 70-279 1-196 (199)
97 PRK14493 putative bifunctional 99.0 4.1E-09 8.9E-14 98.0 13.0 128 69-217 1-129 (274)
98 TIGR00750 lao LAO/AO transport 99.0 9.4E-09 2E-13 97.7 15.8 152 67-242 32-184 (300)
99 PRK13505 formate--tetrahydrofo 99.0 1.1E-08 2.3E-13 101.4 15.9 91 213-310 356-458 (557)
100 PRK05632 phosphate acetyltrans 99.0 1.5E-08 3.3E-13 106.6 17.0 178 68-279 1-200 (684)
101 TIGR00313 cobQ cobyric acid sy 99.0 1.4E-08 2.9E-13 102.3 15.0 195 72-276 1-225 (475)
102 COG0132 BioD Dethiobiotin synt 98.9 3.6E-08 7.7E-13 88.0 15.2 200 68-278 1-207 (223)
103 PRK12723 flagellar biosynthesi 98.9 2.2E-08 4.8E-13 97.4 15.0 160 69-270 174-344 (388)
104 COG0552 FtsY Signal recognitio 98.9 2.1E-09 4.5E-14 99.9 6.8 169 67-271 137-317 (340)
105 PRK00784 cobyric acid synthase 98.9 4E-08 8.7E-13 99.6 15.1 195 68-277 1-229 (488)
106 TIGR00379 cobB cobyrinic acid 98.8 1.4E-07 2.9E-12 94.6 15.4 197 72-310 2-212 (449)
107 PRK14723 flhF flagellar biosyn 98.8 5.2E-08 1.1E-12 101.4 12.5 163 69-271 185-356 (767)
108 PRK06731 flhF flagellar biosyn 98.8 2.2E-07 4.7E-12 86.2 15.3 164 68-271 74-244 (270)
109 PRK09435 membrane ATPase/prote 98.8 1.8E-07 3.9E-12 89.2 15.0 152 67-243 54-207 (332)
110 TIGR03499 FlhF flagellar biosy 98.7 2E-08 4.3E-13 94.5 5.4 43 68-111 193-237 (282)
111 PRK14722 flhF flagellar biosyn 98.7 3.9E-07 8.4E-12 88.1 14.2 163 69-271 137-314 (374)
112 COG1797 CobB Cobyrinic acid a, 98.6 1.1E-06 2.3E-11 84.6 15.5 170 71-279 2-183 (451)
113 COG1703 ArgK Putative periplas 98.6 1.1E-06 2.3E-11 80.7 14.5 150 66-241 48-200 (323)
114 KOG0780 Signal recognition par 98.6 7.8E-07 1.7E-11 83.7 13.2 151 67-245 99-255 (483)
115 PRK06995 flhF flagellar biosyn 98.5 1.1E-06 2.5E-11 87.5 12.5 160 69-270 256-423 (484)
116 COG2151 PaaD Predicted metal-s 98.5 4.1E-07 8.8E-12 71.6 7.3 52 2-53 41-94 (111)
117 PF03308 ArgK: ArgK protein; 98.5 8.7E-07 1.9E-11 80.1 9.2 149 67-241 27-178 (266)
118 COG1419 FlhF Flagellar GTP-bin 98.3 9E-06 1.9E-10 78.2 12.5 160 69-270 203-370 (407)
119 PRK06278 cobyrinic acid a,c-di 98.3 3.2E-05 7E-10 77.4 16.0 167 67-273 236-418 (476)
120 PRK13896 cobyrinic acid a,c-di 98.3 1.4E-05 3.1E-10 79.0 13.3 170 69-279 1-179 (433)
121 KOG0781 Signal recognition par 98.2 5E-06 1.1E-10 80.4 8.3 156 66-241 375-541 (587)
122 cd04170 EF-G_bact Elongation f 97.9 8.2E-05 1.8E-09 69.6 10.8 96 174-276 61-157 (268)
123 PF01883 DUF59: Domain of unkn 97.9 2.8E-05 6.2E-10 57.0 5.9 45 2-46 28-72 (72)
124 cd00477 FTHFS Formyltetrahydro 97.8 3.5E-05 7.6E-10 75.9 6.7 50 68-120 37-89 (524)
125 TIGR03406 FeS_long_SufT probab 97.8 9.2E-05 2E-09 63.7 7.8 51 3-53 103-158 (174)
126 cd04168 TetM_like Tet(M)-like 97.8 0.00037 8E-09 63.9 12.3 93 174-273 61-154 (237)
127 PRK14721 flhF flagellar biosyn 97.8 0.00077 1.7E-08 66.5 14.8 161 68-271 190-359 (420)
128 COG1763 MobB Molybdopterin-gua 97.8 0.00027 5.8E-09 60.1 10.1 42 68-110 1-42 (161)
129 PRK13506 formate--tetrahydrofo 97.8 5.5E-05 1.2E-09 75.3 6.6 50 68-120 53-105 (578)
130 cd01886 EF-G Elongation factor 97.8 0.0022 4.8E-08 59.9 17.2 96 174-276 61-157 (270)
131 COG1492 CobQ Cobyric acid synt 97.7 0.00015 3.1E-09 71.5 8.8 198 70-277 2-229 (486)
132 COG1341 Predicted GTPase or GT 97.7 0.00035 7.6E-09 67.2 10.9 44 69-113 73-116 (398)
133 KOG1532 GTPase XAB1, interacts 97.7 0.00031 6.8E-09 63.6 9.5 48 67-115 17-64 (366)
134 TIGR00176 mobB molybdopterin-g 97.7 0.00016 3.4E-09 61.7 7.4 39 71-110 1-39 (155)
135 PRK14494 putative molybdopteri 97.6 0.0002 4.3E-09 64.8 8.1 39 69-108 1-39 (229)
136 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00085 1.8E-08 62.6 12.1 94 174-274 68-162 (267)
137 TIGR02159 PA_CoA_Oxy4 phenylac 97.6 0.00024 5.1E-09 59.4 7.4 51 2-53 19-69 (146)
138 TIGR02945 SUF_assoc FeS assemb 97.5 0.00052 1.1E-08 53.7 7.7 52 2-53 30-82 (99)
139 PF03205 MobB: Molybdopterin g 97.5 0.00034 7.5E-09 58.5 6.6 41 70-111 1-42 (140)
140 PRK14495 putative molybdopteri 97.4 0.0011 2.4E-08 64.9 10.8 40 69-109 1-40 (452)
141 cd04167 Snu114p Snu114p subfam 97.4 0.0012 2.6E-08 59.5 10.1 67 175-242 69-135 (213)
142 PF03029 ATP_bind_1: Conserved 97.4 2.5E-05 5.5E-10 71.4 -1.0 37 77-113 3-39 (238)
143 cd01884 EF_Tu EF-Tu subfamily. 97.4 0.0013 2.9E-08 58.3 9.7 68 175-242 63-130 (195)
144 COG0529 CysC Adenylylsulfate k 97.3 0.00035 7.5E-09 59.4 4.9 53 66-119 20-72 (197)
145 COG0857 Pta BioD-like N-termin 97.3 0.0017 3.7E-08 62.5 10.1 38 68-105 1-38 (354)
146 PLN02974 adenosylmethionine-8- 97.3 0.024 5.3E-07 60.9 19.6 64 175-239 183-252 (817)
147 PRK00889 adenylylsulfate kinas 97.2 0.00057 1.2E-08 59.5 5.8 41 69-110 4-44 (175)
148 PRK04296 thymidine kinase; Pro 97.2 0.0034 7.3E-08 55.5 10.5 33 72-104 4-36 (190)
149 PF01583 APS_kinase: Adenylyls 97.2 0.00071 1.5E-08 57.3 5.5 43 70-113 3-45 (156)
150 KOG1533 Predicted GTPase [Gene 97.2 0.00043 9.3E-09 61.4 4.1 39 77-115 9-47 (290)
151 cd03116 MobB Molybdenum is an 97.2 0.00093 2E-08 57.1 6.1 41 69-110 1-41 (159)
152 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0025 5.3E-08 54.3 8.6 35 71-106 4-38 (159)
153 cd04166 CysN_ATPS CysN_ATPS su 97.2 0.0032 6.9E-08 56.5 9.8 69 174-243 74-143 (208)
154 PRK12740 elongation factor G; 97.1 0.0035 7.6E-08 66.6 11.0 94 174-274 57-151 (668)
155 cd04163 Era Era subfamily. Er 97.1 0.0087 1.9E-07 50.7 11.6 67 175-242 49-123 (168)
156 cd01394 radB RadB. The archaea 97.1 0.00089 1.9E-08 60.5 5.4 39 71-109 20-58 (218)
157 PRK07667 uridine kinase; Provi 97.1 0.0013 2.8E-08 58.3 6.2 39 70-109 18-56 (193)
158 cd00881 GTP_translation_factor 97.1 0.0036 7.9E-08 54.6 9.1 67 175-242 60-126 (189)
159 PRK00089 era GTPase Era; Revie 97.0 0.012 2.6E-07 55.7 12.8 68 175-243 51-126 (292)
160 PRK00741 prfC peptide chain re 97.0 0.012 2.5E-07 60.4 13.1 94 174-274 76-170 (526)
161 PRK03846 adenylylsulfate kinas 97.0 0.0014 3.1E-08 58.3 5.7 45 65-110 20-64 (198)
162 PF00009 GTP_EFTU: Elongation 97.0 0.0056 1.2E-07 53.9 9.4 67 175-242 68-134 (188)
163 cd04165 GTPBP1_like GTPBP1-lik 96.9 0.011 2.4E-07 53.6 11.0 66 175-242 82-150 (224)
164 cd01125 repA Hexameric Replica 96.9 0.002 4.2E-08 59.2 6.2 40 71-110 2-53 (239)
165 TIGR02012 tigrfam_recA protein 96.9 0.0019 4.2E-08 61.4 6.3 39 69-108 55-93 (321)
166 PRK07952 DNA replication prote 96.9 0.0013 2.9E-08 60.2 4.9 35 72-106 101-135 (244)
167 PRK05973 replicative DNA helic 96.9 0.0017 3.7E-08 59.1 5.4 39 71-109 65-103 (237)
168 TIGR00490 aEF-2 translation el 96.8 0.0038 8.2E-08 66.6 8.6 68 174-242 83-150 (720)
169 TIGR01618 phage_P_loop phage n 96.8 0.0046 9.9E-08 55.7 7.8 33 69-109 12-44 (220)
170 PRK09361 radB DNA repair and r 96.8 0.002 4.3E-08 58.6 5.5 37 70-107 24-60 (225)
171 PF06155 DUF971: Protein of un 96.8 0.00078 1.7E-08 51.6 2.2 30 383-412 3-33 (89)
172 TIGR00708 cobA cob(I)alamin ad 96.8 0.0069 1.5E-07 52.2 8.3 36 72-108 8-43 (173)
173 TIGR00503 prfC peptide chain r 96.8 0.014 2.9E-07 59.9 11.8 94 174-274 77-171 (527)
174 smart00382 AAA ATPases associa 96.8 0.0034 7.4E-08 51.5 6.2 40 70-110 3-42 (148)
175 cd03113 CTGs CTP synthetase (C 96.7 0.039 8.5E-07 49.8 12.8 186 78-274 10-237 (255)
176 PRK00007 elongation factor G; 96.7 0.013 2.9E-07 62.3 11.8 94 174-274 72-166 (693)
177 PRK06696 uridine kinase; Valid 96.7 0.0029 6.3E-08 57.4 5.9 41 69-110 22-62 (223)
178 cd01124 KaiC KaiC is a circadi 96.7 0.0022 4.8E-08 56.2 5.0 38 73-110 2-39 (187)
179 cd01891 TypA_BipA TypA (tyrosi 96.7 0.072 1.6E-06 47.0 14.7 67 175-242 63-129 (194)
180 PF13479 AAA_24: AAA domain 96.7 0.0064 1.4E-07 54.8 7.8 30 71-109 5-34 (213)
181 PHA02542 41 41 helicase; Provi 96.7 0.0023 5.1E-08 64.4 5.3 41 71-111 191-231 (473)
182 PRK00652 lpxK tetraacyldisacch 96.7 0.013 2.9E-07 56.0 10.2 40 70-109 50-90 (325)
183 cd02028 UMPK_like Uridine mono 96.7 0.0025 5.5E-08 55.7 4.9 38 72-110 2-39 (179)
184 TIGR02237 recomb_radB DNA repa 96.7 0.0035 7.6E-08 56.2 6.0 38 70-108 13-50 (209)
185 COG1618 Predicted nucleotide k 96.7 0.0039 8.4E-08 52.4 5.5 37 67-104 3-39 (179)
186 cd01120 RecA-like_NTPases RecA 96.7 0.0026 5.6E-08 54.1 4.7 38 74-111 3-40 (165)
187 cd03112 CobW_like The function 96.6 0.043 9.4E-07 46.8 12.2 34 73-108 3-36 (158)
188 PRK14489 putative bifunctional 96.6 0.0063 1.4E-07 59.6 7.8 42 68-110 204-245 (366)
189 cd01887 IF2_eIF5B IF2/eIF5B (i 96.6 0.016 3.6E-07 49.4 9.5 67 175-242 48-114 (168)
190 PF13245 AAA_19: Part of AAA d 96.6 0.0043 9.4E-08 45.8 4.9 36 71-106 11-50 (76)
191 PRK06762 hypothetical protein; 96.6 0.0031 6.8E-08 54.3 4.9 39 68-110 1-39 (166)
192 PRK00049 elongation factor Tu; 96.6 0.02 4.4E-07 56.7 11.0 68 175-242 73-140 (396)
193 PRK15453 phosphoribulokinase; 96.6 0.0046 1E-07 57.4 5.9 43 68-111 4-46 (290)
194 PRK14491 putative bifunctional 96.6 0.0064 1.4E-07 63.2 7.6 42 68-110 9-50 (597)
195 PRK12739 elongation factor G; 96.6 0.027 5.9E-07 60.0 12.6 94 174-274 70-164 (691)
196 PRK00093 GTP-binding protein D 96.5 0.033 7.2E-07 56.0 12.6 66 175-241 47-120 (435)
197 cd01894 EngA1 EngA1 subfamily. 96.5 0.031 6.6E-07 47.0 10.7 67 175-242 43-117 (157)
198 COG3367 Uncharacterized conser 96.5 0.051 1.1E-06 50.8 12.4 163 69-274 148-326 (339)
199 TIGR00682 lpxK tetraacyldisacc 96.5 0.018 4E-07 54.7 9.8 40 69-108 28-68 (311)
200 PRK05480 uridine/cytidine kina 96.5 0.0055 1.2E-07 55.0 6.1 41 67-110 4-44 (209)
201 PRK05986 cob(I)alamin adenolsy 96.5 0.015 3.3E-07 50.9 8.5 36 71-107 24-59 (191)
202 cd01393 recA_like RecA is a b 96.5 0.0066 1.4E-07 55.1 6.6 39 69-108 19-63 (226)
203 PF13207 AAA_17: AAA domain; P 96.5 0.0034 7.3E-08 50.8 4.2 30 72-105 2-31 (121)
204 PRK10751 molybdopterin-guanine 96.5 0.0086 1.9E-07 51.7 6.8 42 68-110 5-46 (173)
205 cd02027 APSK Adenosine 5'-phos 96.5 0.0038 8.2E-08 52.8 4.5 37 74-110 3-39 (149)
206 PRK10218 GTP-binding protein; 96.5 0.054 1.2E-06 56.4 13.7 69 174-243 65-133 (607)
207 PF13481 AAA_25: AAA domain; P 96.5 0.0039 8.4E-08 55.1 4.7 40 71-110 33-82 (193)
208 cd02029 PRK_like Phosphoribulo 96.4 0.0051 1.1E-07 56.6 5.2 40 71-111 1-40 (277)
209 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0041 9E-08 57.5 4.5 37 73-109 2-38 (249)
210 COG0050 TufB GTPases - transla 96.4 0.014 3E-07 53.8 7.6 129 176-315 74-203 (394)
211 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0059 1.3E-07 56.8 5.5 38 71-108 37-74 (259)
212 PF07755 DUF1611: Protein of u 96.4 0.029 6.2E-07 52.7 9.9 164 68-271 111-292 (301)
213 cd04171 SelB SelB subfamily. 96.3 0.02 4.3E-07 48.6 8.4 67 176-242 50-116 (164)
214 PRK08233 hypothetical protein; 96.3 0.0037 8.1E-08 54.5 3.8 37 70-109 4-40 (182)
215 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0057 1.2E-07 55.9 5.2 39 70-109 20-64 (235)
216 cd01122 GP4d_helicase GP4d_hel 96.3 0.0054 1.2E-07 57.4 5.1 37 72-108 32-69 (271)
217 PRK13351 elongation factor G; 96.3 0.05 1.1E-06 58.0 12.7 94 174-274 70-164 (687)
218 TIGR00436 era GTP-binding prot 96.3 0.072 1.6E-06 49.8 12.4 66 175-242 46-119 (270)
219 TIGR01394 TypA_BipA GTP-bindin 96.3 0.026 5.6E-07 58.7 10.2 67 174-242 61-128 (594)
220 TIGR00484 EF-G translation elo 96.3 0.12 2.5E-06 55.3 15.2 95 174-275 72-167 (689)
221 PHA00729 NTP-binding motif con 96.3 0.0077 1.7E-07 54.2 5.4 24 71-95 19-42 (226)
222 TIGR00455 apsK adenylylsulfate 96.3 0.008 1.7E-07 52.7 5.5 43 67-110 16-58 (184)
223 KOG1534 Putative transcription 96.2 0.0099 2.2E-07 52.1 5.7 45 68-112 1-45 (273)
224 COG3598 RepA RecA-family ATPas 96.2 0.0047 1E-07 57.6 4.0 43 71-113 90-142 (402)
225 COG1066 Sms Predicted ATP-depe 96.2 0.0062 1.3E-07 58.8 4.9 37 71-108 94-130 (456)
226 TIGR03575 selen_PSTK_euk L-ser 96.2 0.0054 1.2E-07 58.9 4.5 40 72-111 1-41 (340)
227 cd00984 DnaB_C DnaB helicase C 96.2 0.0072 1.6E-07 55.5 5.1 39 71-109 14-53 (242)
228 PLN03127 Elongation factor Tu; 96.1 0.085 1.8E-06 53.0 12.5 68 175-242 122-189 (447)
229 PRK07414 cob(I)yrinic acid a,c 96.1 0.059 1.3E-06 46.5 9.6 43 63-107 16-58 (178)
230 PRK05541 adenylylsulfate kinas 96.0 0.013 2.9E-07 50.9 5.7 39 69-108 7-45 (176)
231 PF01695 IstB_IS21: IstB-like 96.0 0.0086 1.9E-07 52.3 4.4 38 69-107 47-84 (178)
232 PRK05439 pantothenate kinase; 96.0 0.015 3.3E-07 55.1 6.2 44 66-110 83-128 (311)
233 cd01885 EF2 EF2 (for archaea a 96.0 0.07 1.5E-06 48.3 10.3 66 175-241 71-136 (222)
234 cd02019 NK Nucleoside/nucleoti 96.0 0.014 3.1E-07 42.2 4.7 32 72-106 2-33 (69)
235 COG1484 DnaC DNA replication p 96.0 0.01 2.2E-07 54.9 4.9 37 69-106 105-141 (254)
236 TIGR02034 CysN sulfate adenyly 96.0 0.015 3.3E-07 57.7 6.4 67 175-242 78-145 (406)
237 PF00485 PRK: Phosphoribulokin 95.9 0.01 2.2E-07 52.6 4.7 38 71-109 1-42 (194)
238 cd04127 Rab27A Rab27a subfamil 95.9 0.3 6.5E-06 42.2 14.0 87 176-267 62-153 (180)
239 cd01883 EF1_alpha Eukaryotic e 95.9 0.016 3.5E-07 52.4 5.9 70 174-243 74-150 (219)
240 PF03796 DnaB_C: DnaB-like hel 95.9 0.012 2.7E-07 54.7 5.2 40 71-110 20-60 (259)
241 cd01889 SelB_euk SelB subfamil 95.9 0.039 8.4E-07 48.7 8.2 66 175-242 66-132 (192)
242 KOG0635 Adenosine 5'-phosphosu 95.9 0.021 4.5E-07 47.3 5.7 51 64-115 26-76 (207)
243 cd00880 Era_like Era (E. coli 95.9 0.064 1.4E-06 44.7 9.1 66 176-242 44-116 (163)
244 PRK06526 transposase; Provisio 95.9 0.0057 1.2E-07 56.6 2.7 36 70-106 99-134 (254)
245 PRK01906 tetraacyldisaccharide 95.8 0.04 8.8E-07 53.0 8.5 42 69-110 56-98 (338)
246 COG4088 Predicted nucleotide k 95.8 0.009 2E-07 52.3 3.6 38 72-109 3-40 (261)
247 PF01926 MMR_HSR1: 50S ribosom 95.8 0.074 1.6E-06 42.5 8.7 63 175-239 45-116 (116)
248 cd04137 RheB Rheb (Ras Homolog 95.8 0.27 5.8E-06 42.5 12.9 67 176-243 48-119 (180)
249 PRK15494 era GTPase Era; Provi 95.8 0.14 3E-06 49.7 12.0 66 175-242 98-172 (339)
250 COG1159 Era GTPase [General fu 95.8 0.14 3E-06 47.6 11.2 111 71-242 8-126 (298)
251 cd04125 RabA_like RabA-like su 95.7 0.56 1.2E-05 41.0 14.8 67 176-242 48-117 (188)
252 PRK09302 circadian clock prote 95.7 0.032 6.9E-07 57.3 7.7 40 70-110 32-72 (509)
253 PTZ00141 elongation factor 1- 95.7 0.021 4.5E-07 57.5 6.1 68 174-241 82-156 (446)
254 CHL00071 tufA elongation facto 95.6 0.12 2.7E-06 51.4 11.5 67 175-242 73-140 (409)
255 TIGR03600 phage_DnaB phage rep 95.6 0.016 3.5E-07 57.9 5.2 38 72-109 196-234 (421)
256 TIGR00485 EF-Tu translation el 95.6 0.11 2.4E-06 51.5 11.0 68 175-242 73-140 (394)
257 cd00154 Rab Rab family. Rab G 95.6 0.17 3.6E-06 42.3 10.8 67 175-242 47-117 (159)
258 smart00173 RAS Ras subfamily o 95.6 0.33 7.1E-06 41.2 12.7 67 176-243 47-118 (164)
259 PRK12736 elongation factor Tu; 95.6 0.1 2.2E-06 51.7 10.7 68 175-242 73-140 (394)
260 COG0467 RAD55 RecA-superfamily 95.6 0.024 5.2E-07 52.7 5.9 42 69-111 23-64 (260)
261 cd02025 PanK Pantothenate kina 95.6 0.019 4E-07 52.0 4.9 39 71-110 1-41 (220)
262 cd04124 RabL2 RabL2 subfamily. 95.6 0.24 5.3E-06 42.0 11.7 67 175-242 47-116 (161)
263 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.026 5.6E-07 51.3 5.9 39 70-109 21-59 (229)
264 cd01888 eIF2_gamma eIF2-gamma 95.6 0.13 2.9E-06 45.8 10.3 66 177-242 83-149 (203)
265 cd04139 RalA_RalB RalA/RalB su 95.5 0.28 6.1E-06 41.4 12.0 66 176-242 47-117 (164)
266 PRK08533 flagellar accessory p 95.5 0.024 5.2E-07 51.7 5.5 39 70-109 25-63 (230)
267 PRK06067 flagellar accessory p 95.5 0.025 5.3E-07 51.7 5.4 38 70-108 26-63 (234)
268 cd00983 recA RecA is a bacter 95.5 0.024 5.1E-07 54.1 5.4 38 70-108 56-93 (325)
269 PLN03126 Elongation factor Tu; 95.5 0.096 2.1E-06 53.1 10.0 68 175-242 142-209 (478)
270 PRK12377 putative replication 95.5 0.022 4.9E-07 52.4 5.0 37 70-107 102-138 (248)
271 cd04110 Rab35 Rab35 subfamily. 95.4 0.25 5.5E-06 43.7 11.7 66 177-242 55-122 (199)
272 PRK05595 replicative DNA helic 95.4 0.021 4.6E-07 57.5 5.2 39 71-109 202-241 (444)
273 cd02023 UMPK Uridine monophosp 95.4 0.022 4.9E-07 50.5 4.8 36 72-110 2-37 (198)
274 cd01882 BMS1 Bms1. Bms1 is an 95.4 0.19 4.2E-06 45.6 11.0 64 176-242 82-145 (225)
275 PRK09183 transposase/IS protei 95.4 0.024 5.3E-07 52.6 5.1 36 70-106 103-138 (259)
276 cd01867 Rab8_Rab10_Rab13_like 95.4 0.36 7.9E-06 41.2 12.3 66 176-242 51-120 (167)
277 cd04112 Rab26 Rab26 subfamily. 95.4 0.29 6.3E-06 43.0 11.9 66 176-242 49-118 (191)
278 PRK06217 hypothetical protein; 95.4 0.023 4.9E-07 49.9 4.6 33 70-108 2-34 (183)
279 COG2874 FlaH Predicted ATPases 95.4 0.079 1.7E-06 46.9 7.7 102 70-184 29-131 (235)
280 PRK12735 elongation factor Tu; 95.3 0.13 2.9E-06 50.9 10.4 68 175-242 73-140 (396)
281 COG1160 Predicted GTPases [Gen 95.3 0.4 8.8E-06 47.2 13.2 112 70-242 4-124 (444)
282 TIGR00041 DTMP_kinase thymidyl 95.3 0.034 7.4E-07 49.1 5.5 37 69-106 3-39 (195)
283 PF08433 KTI12: Chromatin asso 95.3 0.025 5.4E-07 52.8 4.7 37 72-108 3-39 (270)
284 PRK08506 replicative DNA helic 95.2 0.027 5.9E-07 57.1 5.3 40 71-110 193-232 (472)
285 cd01672 TMPK Thymidine monopho 95.2 0.032 6.9E-07 49.2 5.2 35 71-106 2-36 (200)
286 COG1663 LpxK Tetraacyldisaccha 95.2 0.13 2.7E-06 48.9 9.2 42 69-110 47-89 (336)
287 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.2 0.49 1.1E-05 40.8 12.5 66 176-242 49-119 (172)
288 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.037 8E-07 50.2 5.4 39 69-108 16-54 (224)
289 COG2403 Predicted GTPase [Gene 95.1 0.031 6.7E-07 53.2 4.9 38 69-106 126-163 (449)
290 cd01864 Rab19 Rab19 subfamily. 95.1 0.29 6.3E-06 41.6 10.8 65 177-242 52-120 (165)
291 cd04160 Arfrp1 Arfrp1 subfamil 95.1 0.36 7.8E-06 41.0 11.3 67 175-242 48-119 (167)
292 PRK06749 replicative DNA helic 95.1 0.031 6.6E-07 55.9 5.0 40 71-110 187-226 (428)
293 TIGR03420 DnaA_homol_Hda DnaA 95.1 0.038 8.2E-07 50.0 5.3 39 70-109 39-77 (226)
294 PRK08760 replicative DNA helic 95.1 0.029 6.3E-07 56.8 4.9 40 71-110 230-270 (476)
295 PRK06835 DNA replication prote 95.0 0.032 6.9E-07 53.6 4.7 39 69-108 183-221 (329)
296 smart00175 RAB Rab subfamily o 95.0 0.33 7.2E-06 41.0 10.8 65 177-242 49-117 (164)
297 cd04161 Arl2l1_Arl13_like Arl2 95.0 0.63 1.4E-05 39.8 12.5 67 175-242 41-112 (167)
298 PLN02924 thymidylate kinase 95.0 0.053 1.1E-06 49.0 5.8 40 66-106 13-52 (220)
299 PRK08118 topology modulation p 95.0 0.026 5.6E-07 48.7 3.7 25 69-94 1-25 (167)
300 PLN00043 elongation factor 1-a 95.0 0.14 3.1E-06 51.5 9.5 69 174-242 82-157 (447)
301 PRK11823 DNA repair protein Ra 95.0 0.04 8.6E-07 55.4 5.5 38 71-108 81-118 (446)
302 TIGR02238 recomb_DMC1 meiotic 95.0 0.046 1E-06 52.2 5.7 38 71-108 97-140 (313)
303 TIGR03594 GTPase_EngA ribosome 95.0 0.2 4.4E-06 50.2 10.7 68 175-243 45-120 (429)
304 TIGR00416 sms DNA repair prote 95.0 0.038 8.3E-07 55.6 5.4 38 71-108 95-132 (454)
305 COG4240 Predicted kinase [Gene 94.9 0.038 8.3E-07 49.1 4.6 39 70-108 50-89 (300)
306 cd00009 AAA The AAA+ (ATPases 94.9 0.047 1E-06 45.0 5.1 40 70-110 20-59 (151)
307 PF01935 DUF87: Domain of unkn 94.9 0.042 9.2E-07 49.9 5.1 39 69-108 23-62 (229)
308 cd01121 Sms Sms (bacterial rad 94.9 0.042 9E-07 53.8 5.3 38 71-108 83-120 (372)
309 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.049 1.1E-06 49.9 5.5 39 70-109 22-60 (237)
310 PRK04040 adenylate kinase; Pro 94.9 0.038 8.2E-07 48.7 4.5 32 68-101 1-32 (188)
311 cd01860 Rab5_related Rab5-rela 94.8 0.47 1E-05 40.1 11.2 67 176-242 49-118 (163)
312 KOG2749 mRNA cleavage and poly 94.8 0.056 1.2E-06 51.2 5.6 44 69-113 103-146 (415)
313 PRK09270 nucleoside triphospha 94.8 0.055 1.2E-06 49.3 5.6 40 69-109 33-73 (229)
314 COG1102 Cmk Cytidylate kinase 94.8 0.027 5.7E-07 47.5 3.1 24 71-95 2-25 (179)
315 PRK08006 replicative DNA helic 94.8 0.042 9.2E-07 55.5 5.2 39 71-109 225-264 (471)
316 cd04122 Rab14 Rab14 subfamily. 94.8 0.62 1.3E-05 39.6 11.8 67 176-242 50-119 (166)
317 PRK09554 feoB ferrous iron tra 94.8 0.34 7.3E-06 52.1 12.1 89 175-271 48-148 (772)
318 PF06745 KaiC: KaiC; InterPro 94.7 0.04 8.6E-07 50.0 4.5 39 70-109 20-59 (226)
319 PRK08939 primosomal protein Dn 94.7 0.045 9.9E-07 52.1 5.0 37 70-107 157-193 (306)
320 TIGR00665 DnaB replicative DNA 94.7 0.045 9.7E-07 55.0 5.2 40 71-110 196-236 (434)
321 cd04109 Rab28 Rab28 subfamily. 94.7 0.49 1.1E-05 42.5 11.5 87 176-266 49-141 (215)
322 PRK08727 hypothetical protein; 94.7 0.047 1E-06 49.9 4.8 36 71-107 43-78 (233)
323 TIGR00554 panK_bact pantothena 94.7 0.073 1.6E-06 50.1 6.1 42 68-110 61-104 (290)
324 cd04142 RRP22 RRP22 subfamily. 94.7 0.65 1.4E-05 41.2 12.1 66 176-242 48-128 (198)
325 PRK09354 recA recombinase A; P 94.7 0.053 1.2E-06 52.2 5.3 39 69-108 60-98 (349)
326 PRK00131 aroK shikimate kinase 94.7 0.038 8.3E-07 47.6 4.0 33 70-108 5-37 (175)
327 cd01868 Rab11_like Rab11-like. 94.7 0.49 1.1E-05 40.1 10.9 67 176-242 51-120 (165)
328 PRK05642 DNA replication initi 94.6 0.048 1E-06 49.9 4.7 35 74-108 49-83 (234)
329 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.6 0.74 1.6E-05 39.1 12.0 66 176-242 50-119 (166)
330 cd04118 Rab24 Rab24 subfamily. 94.6 0.65 1.4E-05 40.7 11.8 65 177-242 50-117 (193)
331 PTZ00133 ADP-ribosylation fact 94.6 2.8 6E-05 36.4 15.7 82 175-266 59-145 (182)
332 cd01866 Rab2 Rab2 subfamily. 94.6 0.52 1.1E-05 40.3 11.0 65 177-242 53-121 (168)
333 PTZ00416 elongation factor 2; 94.6 0.18 3.9E-06 54.9 9.7 68 175-243 90-157 (836)
334 PRK10463 hydrogenase nickel in 94.6 0.22 4.8E-06 46.7 9.0 40 68-109 103-142 (290)
335 PF13173 AAA_14: AAA domain 94.6 0.051 1.1E-06 44.5 4.3 39 70-110 3-41 (128)
336 PRK05306 infB translation init 94.5 0.38 8.3E-06 51.6 11.8 67 175-242 335-401 (787)
337 PRK03003 GTP-binding protein D 94.5 0.34 7.3E-06 49.3 11.1 67 175-242 84-158 (472)
338 PRK08903 DnaA regulatory inact 94.5 0.058 1.3E-06 49.0 5.0 36 73-108 45-80 (227)
339 PF02572 CobA_CobO_BtuR: ATP:c 94.5 0.08 1.7E-06 45.7 5.5 28 79-106 12-39 (172)
340 PRK06761 hypothetical protein; 94.5 0.048 1E-06 51.0 4.4 39 69-108 3-42 (282)
341 PRK08840 replicative DNA helic 94.5 0.055 1.2E-06 54.6 5.1 39 71-109 218-257 (464)
342 PRK07933 thymidylate kinase; V 94.5 0.088 1.9E-06 47.4 6.0 37 71-108 2-38 (213)
343 KOG3888 Gamma-butyrobetaine,2- 94.5 0.063 1.4E-06 50.6 5.0 70 289-359 43-113 (407)
344 PTZ00035 Rad51 protein; Provis 94.5 0.085 1.8E-06 51.0 6.2 39 69-108 118-162 (337)
345 PRK08181 transposase; Validate 94.5 0.045 9.8E-07 51.0 4.2 36 70-106 107-142 (269)
346 PRK12317 elongation factor 1-a 94.5 0.36 7.8E-06 48.3 11.0 69 174-242 81-151 (425)
347 PF12846 AAA_10: AAA-like doma 94.4 0.055 1.2E-06 51.1 4.9 34 74-107 5-38 (304)
348 cd04126 Rab20 Rab20 subfamily. 94.4 3.5 7.5E-05 37.2 16.3 68 175-242 42-112 (220)
349 PRK06904 replicative DNA helic 94.4 0.053 1.1E-06 54.9 4.9 39 71-109 222-261 (472)
350 TIGR00235 udk uridine kinase. 94.4 0.061 1.3E-06 48.1 4.8 39 68-109 5-43 (207)
351 PRK05433 GTP-binding protein L 94.4 0.32 7E-06 50.8 10.7 67 175-242 72-138 (600)
352 TIGR02655 circ_KaiC circadian 94.4 0.13 2.8E-06 52.5 7.6 38 70-108 22-60 (484)
353 COG4108 PrfC Peptide chain rel 94.4 0.2 4.4E-06 48.9 8.3 84 175-267 79-164 (528)
354 cd04136 Rap_like Rap-like subf 94.4 0.97 2.1E-05 38.0 12.1 65 177-242 49-118 (163)
355 PLN03046 D-glycerate 3-kinase; 94.4 0.079 1.7E-06 52.0 5.7 42 68-110 211-252 (460)
356 PRK06547 hypothetical protein; 94.4 0.054 1.2E-06 47.0 4.2 37 67-109 13-49 (172)
357 PRK05748 replicative DNA helic 94.3 0.055 1.2E-06 54.6 4.8 40 71-110 204-244 (448)
358 PRK05380 pyrG CTP synthetase; 94.3 0.24 5.3E-06 50.1 9.2 50 68-117 1-51 (533)
359 PF02606 LpxK: Tetraacyldisacc 94.3 0.069 1.5E-06 51.3 5.2 40 69-108 35-75 (326)
360 cd01861 Rab6 Rab6 subfamily. 94.3 0.82 1.8E-05 38.4 11.5 66 177-242 49-117 (161)
361 cd04101 RabL4 RabL4 (Rab-like4 94.3 0.72 1.6E-05 39.0 11.2 67 175-242 50-119 (164)
362 cd04148 RGK RGK subfamily. Th 94.3 1.7 3.7E-05 39.2 14.1 64 176-242 49-118 (221)
363 PRK06893 DNA replication initi 94.3 0.063 1.4E-06 48.9 4.7 35 73-107 42-76 (229)
364 PF13086 AAA_11: AAA domain; P 94.3 0.046 1E-06 49.3 3.8 34 72-105 19-60 (236)
365 cd04108 Rab36_Rab34 Rab34/Rab3 94.3 0.58 1.3E-05 40.2 10.6 67 176-242 48-118 (170)
366 TIGR02655 circ_KaiC circadian 94.3 0.073 1.6E-06 54.2 5.6 40 70-109 263-302 (484)
367 cd01878 HflX HflX subfamily. 94.3 0.78 1.7E-05 40.6 11.7 67 176-242 88-165 (204)
368 PRK09519 recA DNA recombinatio 94.3 0.11 2.3E-06 55.3 6.9 40 71-110 61-100 (790)
369 PRK06321 replicative DNA helic 94.2 0.066 1.4E-06 54.1 5.1 40 71-110 227-267 (472)
370 PLN03187 meiotic recombination 94.2 0.11 2.4E-06 50.2 6.4 39 70-108 126-170 (344)
371 PRK10512 selenocysteinyl-tRNA- 94.2 0.35 7.5E-06 50.7 10.5 64 178-242 52-116 (614)
372 PRK04328 hypothetical protein; 94.2 0.089 1.9E-06 48.6 5.5 39 70-109 24-62 (249)
373 PRK07261 topology modulation p 94.2 0.062 1.3E-06 46.6 4.2 23 71-94 2-24 (171)
374 PRK08116 hypothetical protein; 94.2 0.069 1.5E-06 49.9 4.8 35 73-107 117-151 (268)
375 PF13671 AAA_33: AAA domain; P 94.2 0.042 9E-07 45.7 3.0 31 73-108 2-32 (143)
376 cd04111 Rab39 Rab39 subfamily. 94.2 3.3 7.2E-05 37.0 15.6 87 176-266 51-141 (211)
377 PF13604 AAA_30: AAA domain; P 94.2 0.079 1.7E-06 47.0 4.9 34 72-105 20-53 (196)
378 PRK03731 aroL shikimate kinase 94.1 0.062 1.3E-06 46.4 4.1 36 68-109 1-36 (171)
379 COG0237 CoaE Dephospho-CoA kin 94.1 0.07 1.5E-06 47.4 4.5 34 68-108 1-34 (201)
380 COG0480 FusA Translation elong 94.1 0.29 6.3E-06 51.7 9.7 95 174-275 72-168 (697)
381 PLN02796 D-glycerate 3-kinase 94.1 0.089 1.9E-06 50.5 5.4 40 69-109 100-139 (347)
382 cd04145 M_R_Ras_like M-Ras/R-R 94.1 0.9 1.9E-05 38.3 11.4 66 177-243 50-120 (164)
383 PF05729 NACHT: NACHT domain 94.1 0.061 1.3E-06 45.7 3.9 26 73-98 3-28 (166)
384 cd04119 RJL RJL (RabJ-Like) su 94.0 1.2 2.7E-05 37.5 12.1 68 175-242 47-122 (168)
385 PRK06921 hypothetical protein; 94.0 0.075 1.6E-06 49.6 4.7 37 69-106 117-154 (266)
386 cd04113 Rab4 Rab4 subfamily. 94.0 1.2 2.6E-05 37.5 12.0 66 176-242 48-117 (161)
387 cd04106 Rab23_lke Rab23-like s 94.0 0.78 1.7E-05 38.6 10.8 88 175-267 49-139 (162)
388 cd00878 Arf_Arl Arf (ADP-ribos 94.0 0.53 1.1E-05 39.6 9.7 66 176-242 42-112 (158)
389 PLN03186 DNA repair protein RA 94.0 0.12 2.6E-06 49.9 6.1 40 70-109 123-168 (342)
390 cd04115 Rab33B_Rab33A Rab33B/R 94.0 1.1 2.4E-05 38.3 11.7 66 176-242 50-121 (170)
391 PF00154 RecA: recA bacterial 94.0 0.12 2.6E-06 49.3 5.9 40 69-109 53-92 (322)
392 TIGR03172 probable selenium-de 94.0 0.071 1.5E-06 48.3 4.2 30 71-103 1-30 (232)
393 TIGR00475 selB selenocysteine- 93.9 0.18 3.9E-06 52.5 7.7 67 176-242 49-115 (581)
394 COG1936 Predicted nucleotide k 93.9 0.07 1.5E-06 45.6 3.8 27 71-102 2-28 (180)
395 PRK09165 replicative DNA helic 93.9 0.078 1.7E-06 54.1 4.9 40 71-110 218-272 (497)
396 COG1855 ATPase (PilT family) [ 93.9 0.064 1.4E-06 52.5 4.0 39 62-101 256-294 (604)
397 cd01898 Obg Obg subfamily. Th 93.9 1.1 2.3E-05 38.1 11.5 64 178-242 49-126 (170)
398 PRK08084 DNA replication initi 93.9 0.088 1.9E-06 48.2 4.8 36 73-108 48-83 (235)
399 TIGR00487 IF-2 translation ini 93.9 0.75 1.6E-05 47.9 12.0 64 178-242 136-199 (587)
400 PRK05636 replicative DNA helic 93.8 0.092 2E-06 53.5 5.2 40 71-110 266-306 (505)
401 cd01895 EngA2 EngA2 subfamily. 93.8 0.99 2.2E-05 38.2 11.1 67 175-242 48-125 (174)
402 PRK05506 bifunctional sulfate 93.8 0.09 1.9E-06 55.5 5.3 44 67-111 458-501 (632)
403 smart00178 SAR Sar1p-like memb 93.8 2.2 4.8E-05 37.1 13.4 83 175-267 59-146 (184)
404 PRK13947 shikimate kinase; Pro 93.8 0.096 2.1E-06 45.1 4.6 33 70-108 2-34 (171)
405 cd04120 Rab12 Rab12 subfamily. 93.8 1.8 3.9E-05 38.5 12.9 68 176-243 48-118 (202)
406 PRK06851 hypothetical protein; 93.8 0.24 5.1E-06 48.2 7.7 43 66-109 211-253 (367)
407 cd02021 GntK Gluconate kinase 93.7 0.062 1.4E-06 45.2 3.3 33 73-110 2-34 (150)
408 PRK00081 coaE dephospho-CoA ki 93.7 0.085 1.8E-06 46.7 4.3 35 68-109 1-35 (194)
409 cd04175 Rap1 Rap1 subgroup. T 93.7 1.7 3.8E-05 36.7 12.5 67 176-243 48-119 (164)
410 cd02024 NRK1 Nicotinamide ribo 93.7 0.063 1.4E-06 47.1 3.4 33 72-109 2-34 (187)
411 COG0572 Udk Uridine kinase [Nu 93.7 0.094 2E-06 46.8 4.4 40 70-112 9-48 (218)
412 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.7 4.1 8.8E-05 35.3 14.9 67 175-242 50-121 (183)
413 PF09848 DUF2075: Uncharacteri 93.7 0.087 1.9E-06 51.4 4.6 38 70-107 1-40 (352)
414 cd00876 Ras Ras family. The R 93.6 1 2.3E-05 37.6 10.8 67 176-243 46-117 (160)
415 PF13401 AAA_22: AAA domain; P 93.6 0.072 1.6E-06 43.5 3.4 40 71-110 5-49 (131)
416 PRK00093 GTP-binding protein D 93.5 0.47 1E-05 47.6 9.8 67 175-242 219-296 (435)
417 PLN00116 translation elongatio 93.5 0.32 7E-06 53.0 9.0 66 176-242 97-162 (843)
418 PLN03110 Rab GTPase; Provision 93.5 4.4 9.4E-05 36.4 15.1 66 176-242 60-129 (216)
419 COG1072 CoaA Panthothenate kin 93.4 0.16 3.6E-06 46.7 5.6 43 67-110 80-124 (283)
420 PRK07004 replicative DNA helic 93.4 0.1 2.2E-06 52.8 4.6 40 71-110 214-254 (460)
421 cd04140 ARHI_like ARHI subfami 93.4 2.5 5.3E-05 35.9 12.8 66 176-242 48-120 (165)
422 PRK13946 shikimate kinase; Pro 93.3 0.11 2.3E-06 45.7 4.1 34 69-108 10-43 (184)
423 PRK00698 tmk thymidylate kinas 93.3 0.17 3.7E-06 44.9 5.5 35 69-104 3-37 (205)
424 PF02421 FeoB_N: Ferrous iron 93.2 0.47 1E-05 40.3 7.8 91 175-273 45-143 (156)
425 cd04144 Ras2 Ras2 subfamily. 93.2 2.1 4.5E-05 37.5 12.3 65 177-242 47-118 (190)
426 cd01865 Rab3 Rab3 subfamily. 93.2 1.9 4E-05 36.6 11.8 67 177-243 50-119 (165)
427 PLN03108 Rab family protein; P 93.2 5.3 0.00012 35.6 15.2 112 177-313 55-172 (210)
428 PLN03118 Rab family protein; P 93.2 1.4 3.1E-05 39.2 11.5 66 176-242 61-132 (211)
429 PF00004 AAA: ATPase family as 93.1 0.14 3E-06 41.7 4.4 31 75-108 3-33 (132)
430 PRK14490 putative bifunctional 93.1 0.24 5.2E-06 48.6 6.7 39 69-109 5-43 (369)
431 PHA02530 pseT polynucleotide k 93.1 0.093 2E-06 49.8 3.7 35 71-109 3-37 (300)
432 CHL00189 infB translation init 93.1 0.45 9.8E-06 50.6 9.0 66 176-242 294-359 (742)
433 PF03266 NTPase_1: NTPase; In 93.0 0.15 3.3E-06 43.9 4.6 31 74-104 3-33 (168)
434 PF13238 AAA_18: AAA domain; P 93.0 0.084 1.8E-06 42.8 2.9 21 74-94 2-22 (129)
435 cd04154 Arl2 Arl2 subfamily. 93.0 1.5 3.3E-05 37.6 11.0 66 176-242 57-127 (173)
436 TIGR01393 lepA GTP-binding pro 93.0 0.93 2E-05 47.4 11.1 84 176-266 69-152 (595)
437 TIGR02239 recomb_RAD51 DNA rep 93.0 0.2 4.2E-06 48.0 5.7 40 69-109 96-141 (316)
438 TIGR02236 recomb_radA DNA repa 92.9 0.14 3E-06 49.0 4.6 38 71-108 96-139 (310)
439 cd04123 Rab21 Rab21 subfamily. 92.9 2.4 5.2E-05 35.4 12.0 66 177-243 49-118 (162)
440 PTZ00301 uridine kinase; Provi 92.9 0.22 4.8E-06 44.6 5.6 40 70-110 4-45 (210)
441 PLN00223 ADP-ribosylation fact 92.9 5.8 0.00013 34.4 15.2 84 175-267 59-146 (181)
442 PTZ00451 dephospho-CoA kinase; 92.9 0.14 3.1E-06 46.9 4.5 35 69-109 1-35 (244)
443 PRK05537 bifunctional sulfate 92.8 0.16 3.5E-06 52.6 5.3 40 69-109 392-432 (568)
444 cd01863 Rab18 Rab18 subfamily. 92.7 2.5 5.3E-05 35.5 11.8 66 176-242 48-118 (161)
445 COG0523 Putative GTPases (G3E 92.7 3 6.5E-05 40.0 13.3 37 72-110 3-39 (323)
446 cd04128 Spg1 Spg1p. Spg1p (se 92.7 3 6.4E-05 36.3 12.4 65 176-242 48-116 (182)
447 cd04117 Rab15 Rab15 subfamily. 92.7 2.1 4.6E-05 36.2 11.3 66 177-242 49-117 (161)
448 PRK14730 coaE dephospho-CoA ki 92.7 0.17 3.7E-06 44.8 4.6 34 70-109 2-35 (195)
449 PRK12339 2-phosphoglycerate ki 92.6 0.12 2.7E-06 45.7 3.6 34 71-108 4-37 (197)
450 cd04153 Arl5_Arl8 Arl5/Arl8 su 92.6 2.2 4.8E-05 36.6 11.5 67 175-242 57-128 (174)
451 PRK03839 putative kinase; Prov 92.6 0.14 3E-06 44.6 3.9 31 71-107 2-32 (180)
452 TIGR00337 PyrG CTP synthase. C 92.6 0.66 1.4E-05 47.1 9.0 49 70-118 2-51 (525)
453 PF06414 Zeta_toxin: Zeta toxi 92.6 0.12 2.6E-06 45.9 3.5 41 69-111 14-54 (199)
454 cd04162 Arl9_Arfrp2_like Arl9/ 92.6 1.6 3.6E-05 37.1 10.5 67 175-242 42-111 (164)
455 PRK07560 elongation factor EF- 92.5 0.37 8E-06 51.8 7.7 67 175-242 85-151 (731)
456 COG0468 RecA RecA/RadA recombi 92.5 0.22 4.7E-06 46.5 5.2 39 69-108 60-98 (279)
457 cd04138 H_N_K_Ras_like H-Ras/N 92.5 3.6 7.7E-05 34.3 12.6 65 177-242 49-118 (162)
458 PRK13973 thymidylate kinase; P 92.5 0.25 5.4E-06 44.4 5.5 35 70-105 4-38 (213)
459 TIGR00073 hypB hydrogenase acc 92.5 0.27 5.8E-06 44.0 5.7 40 68-109 21-60 (207)
460 TIGR02729 Obg_CgtA Obg family 92.5 2.4 5.2E-05 40.9 12.5 65 177-242 205-285 (329)
461 PF00931 NB-ARC: NB-ARC domain 92.5 0.16 3.5E-06 47.7 4.4 43 67-110 17-61 (287)
462 smart00177 ARF ARF-like small 92.4 5.4 0.00012 34.3 13.7 83 175-266 55-141 (175)
463 PLN02422 dephospho-CoA kinase 92.4 0.18 4E-06 45.8 4.5 34 69-109 1-34 (232)
464 PRK04301 radA DNA repair and r 92.3 0.18 3.8E-06 48.4 4.5 38 71-108 103-146 (317)
465 PRK13975 thymidylate kinase; P 92.3 0.16 3.5E-06 44.8 4.0 27 68-95 1-27 (196)
466 TIGR00376 DNA helicase, putati 92.3 0.19 4.2E-06 52.9 5.1 35 71-105 174-208 (637)
467 PRK13949 shikimate kinase; Pro 92.3 0.14 3E-06 44.2 3.4 34 69-108 1-34 (169)
468 cd04155 Arl3 Arl3 subfamily. 92.3 2.9 6.3E-05 35.6 11.8 21 70-91 15-35 (173)
469 cd01893 Miro1 Miro1 subfamily. 92.3 2.4 5.2E-05 36.0 11.2 68 175-243 45-116 (166)
470 PRK14734 coaE dephospho-CoA ki 92.2 0.22 4.7E-06 44.4 4.7 33 69-108 1-33 (200)
471 PLN02327 CTP synthase 92.2 0.74 1.6E-05 46.9 8.8 49 70-118 2-51 (557)
472 PLN02348 phosphoribulokinase 92.2 0.3 6.5E-06 47.7 5.8 42 68-110 48-104 (395)
473 PRK13695 putative NTPase; Prov 92.2 0.28 6.1E-06 42.4 5.3 31 71-102 2-32 (174)
474 cd04146 RERG_RasL11_like RERG/ 92.1 2.2 4.8E-05 36.1 10.8 66 176-242 46-118 (165)
475 PRK06851 hypothetical protein; 92.0 0.42 9.1E-06 46.5 6.7 48 69-116 29-76 (367)
476 TIGR03594 GTPase_EngA ribosome 92.0 1.7 3.7E-05 43.5 11.5 67 176-243 219-296 (429)
477 PF13191 AAA_16: AAA ATPase do 92.0 0.24 5.2E-06 43.0 4.7 40 70-110 25-64 (185)
478 PRK04004 translation initiatio 92.0 1.7 3.8E-05 45.3 11.6 64 178-242 72-135 (586)
479 PRK09302 circadian clock prote 91.9 0.26 5.6E-06 50.6 5.5 39 69-108 273-311 (509)
480 PRK04220 2-phosphoglycerate ki 91.9 0.29 6.3E-06 46.1 5.2 37 69-110 92-128 (301)
481 PRK01184 hypothetical protein; 91.8 0.22 4.9E-06 43.4 4.2 31 69-106 1-31 (184)
482 cd04107 Rab32_Rab38 Rab38/Rab3 91.7 8.7 0.00019 33.8 15.3 68 175-243 48-123 (201)
483 TIGR01313 therm_gnt_kin carboh 91.7 0.17 3.8E-06 43.1 3.4 30 75-109 3-32 (163)
484 cd02020 CMPK Cytidine monophos 91.7 0.16 3.5E-06 42.2 3.1 30 72-107 2-31 (147)
485 PRK09518 bifunctional cytidyla 91.7 1.7 3.7E-05 46.6 11.5 67 175-242 321-395 (712)
486 PRK14531 adenylate kinase; Pro 91.6 0.21 4.6E-06 43.6 3.9 26 68-94 1-26 (183)
487 PF06418 CTP_synth_N: CTP synt 91.6 0.55 1.2E-05 43.0 6.4 50 69-118 1-51 (276)
488 smart00174 RHO Rho (Ras homolo 91.5 1.5 3.2E-05 37.5 9.1 67 175-242 44-114 (174)
489 PRK14733 coaE dephospho-CoA ki 91.4 0.29 6.2E-06 43.6 4.5 35 70-110 7-41 (204)
490 PLN02165 adenylate isopentenyl 91.3 0.22 4.7E-06 47.6 3.8 38 65-108 39-76 (334)
491 COG2895 CysN GTPases - Sulfate 91.3 0.5 1.1E-05 45.0 6.0 102 175-276 84-185 (431)
492 COG2074 2-phosphoglycerate kin 91.3 0.21 4.5E-06 45.3 3.4 26 70-95 89-114 (299)
493 PF00910 RNA_helicase: RNA hel 91.2 0.24 5.2E-06 39.1 3.4 23 75-97 3-25 (107)
494 cd01862 Rab7 Rab7 subfamily. 91.2 1.6 3.4E-05 37.1 8.9 65 178-243 50-122 (172)
495 COG0504 PyrG CTP synthase (UTP 91.2 1.2 2.5E-05 44.4 8.7 45 70-114 2-47 (533)
496 PRK13948 shikimate kinase; Pro 91.2 0.37 8E-06 42.2 4.9 33 70-108 11-43 (182)
497 PRK00091 miaA tRNA delta(2)-is 91.2 0.25 5.5E-06 46.9 4.1 34 69-108 4-37 (307)
498 PF01745 IPT: Isopentenyl tran 91.2 0.38 8.2E-06 42.8 4.8 34 69-106 1-34 (233)
499 COG0125 Tmk Thymidylate kinase 91.1 0.49 1.1E-05 42.3 5.6 37 68-105 2-38 (208)
500 PRK14528 adenylate kinase; Pro 91.1 0.31 6.8E-06 42.8 4.4 24 70-94 2-25 (186)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=3.5e-48 Score=374.58 Aligned_cols=312 Identities=37% Similarity=0.572 Sum_probs=255.9
Q ss_pred eEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecCchhhhccccccccCCceEEEEeeCCCCC
Q 014511 2 QINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGV 81 (423)
Q Consensus 2 ~i~~~~~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGv 81 (423)
+|.+++++|.|.++++++.||..+.+++++++++..++|++++.+.+....+... ...-...+++++++|+|+|+||||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vIaV~S~KGGV 119 (369)
T PRK11670 41 HVALLDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLK-RVNNQPGVNGVKNIIAVSSGKGGV 119 (369)
T ss_pred EEEEeCCEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEeeehhhhc-cccccccCCCCCEEEEEeCCCCCC
Confidence 4678889999999999999999999999999999999999999888765332110 101123577899999999999999
Q ss_pred cHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC--CCcccccCCc
Q 014511 82 GKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS--GQGRAIMRGP 159 (423)
Q Consensus 82 GKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~--~~~~~~~~~~ 159 (423)
||||+|+|||.+||+.|+||++||+|+|+++++.+||........ .....+.+....++...+.+.. ......|+++
T Consensus 120 GKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~ 198 (369)
T PRK11670 120 GKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGP 198 (369)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cCCceeeeeeccCcccccHHHhcCcCcceeecCc
Confidence 999999999999999999999999999999999888864321111 1122344433444444333321 2234567888
Q ss_pred hHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 014511 160 MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 239 (423)
Q Consensus 160 ~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 239 (423)
+....+.+++....|++|||||||||||+++..++..++.++|.+++|++|+..++.++.+.++++.+.+++++|+|+||
T Consensus 199 ~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm 278 (369)
T PRK11670 199 MASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENM 278 (369)
T ss_pred chHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 88888888886555789999999999999998777777888999999999999999999999999999999999999999
Q ss_pred ccccCC--CceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHh
Q 014511 240 CHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 315 (423)
Q Consensus 240 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~~~~~~ 315 (423)
+.+.+. ++.++.|+++..+++++.++.++++.||++..+.++.+.|+|++.+.|+++.+++|.++|+++.+++...
T Consensus 279 ~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~~~p~s~~a~~y~~LA~el~~~~~~~ 356 (369)
T PRK11670 279 SMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRPESEFTAIYRQLADRVAAQLYWQ 356 (369)
T ss_pred CccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 877653 3444467888899999999999999999999999999999999999999999999999999999988644
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-47 Score=339.71 Aligned_cols=252 Identities=42% Similarity=0.681 Sum_probs=230.7
Q ss_pred cccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceee-eccCC
Q 014511 62 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLG 140 (423)
Q Consensus 62 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~ 140 (423)
.+++.+..++|+|.|+||||||||+|+|||.+||+.|++|.++|+|..+|+++.++|.+.+.... ......| ....+
T Consensus 40 ~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~--~~~g~~Pv~~~~~ 117 (300)
T KOG3022|consen 40 QENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQ--SDNGWIPVVVNKN 117 (300)
T ss_pred cccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeee--cCCCceeeeecCC
Confidence 46788899999999999999999999999999999999999999999999999999998876332 2333444 56789
Q ss_pred ceEEcCCCCC---CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCC-CeEEEEeCCCcchHH
Q 014511 141 VKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFI 216 (423)
Q Consensus 141 l~~l~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~-d~~iiv~~p~~~s~~ 216 (423)
+.++++++.. .+..+|++++...+|++|+..+.|+..||+|||||||++|.++++.+.+.. |.+++||||+..++.
T Consensus 118 l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~ 197 (300)
T KOG3022|consen 118 LKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQ 197 (300)
T ss_pred eEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhH
Confidence 9999999753 447899999999999999999999999999999999999999988777766 889999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccC--CCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCC
Q 014511 217 DVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 294 (423)
Q Consensus 217 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~ 294 (423)
++++.++++++.+++++|+|+||+.|.+ +++..++|+.+..+++++.+|+|+++.||.|+.+.++.+.|.|+++..|+
T Consensus 198 Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~ 277 (300)
T KOG3022|consen 198 DVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPD 277 (300)
T ss_pred HHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCC
Confidence 9999999999999999999999999988 57888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 014511 295 GEVANTFQDLGVCVVQQCAKI 315 (423)
Q Consensus 295 s~~~~~~~~la~~i~~~~~~~ 315 (423)
+.++++|.+++.+|.+.+...
T Consensus 278 s~~~~af~~i~~~i~~~~~~~ 298 (300)
T KOG3022|consen 278 SPASEAFEDIAEKLVEQLSSK 298 (300)
T ss_pred chHHHHHHHHHHHHHHhhccc
Confidence 999999999999999987654
No 3
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.6e-34 Score=269.86 Aligned_cols=233 Identities=19% Similarity=0.164 Sum_probs=173.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc--------CCCCCceeeecc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTEY 138 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~--------~~~~~~i~~~~~ 138 (423)
||+|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++..++|... .+.+. ....+.+.+ ..
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~-~~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQP-GF 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEe-CC
Confidence 4899999 999999999999999999999999999999999999888876421 11110 111223333 36
Q ss_pred CCceEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 139 LGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
+|++++|++...... ..+++......+.+.++.+ +++||||||||++++... ......+.++|.+++|++|+..|+.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 799999986532211 1122222222355555544 478999999998776311 1111113478999999999999999
Q ss_pred HHHHHHHHHHcC---CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCC
Q 014511 217 DVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 293 (423)
Q Consensus 217 ~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p 293 (423)
++.++++.++.. +.++.|+|+||.. .. ..+...+++.+.++.++++.||.+..+.+|...|+|++.+.|
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRN--VD------GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDP 229 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCC--CC------ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCC
Confidence 988887777653 5678899999842 11 123457889999998889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 014511 294 CGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 294 ~s~~~~~~~~la~~i~~~~ 312 (423)
+++++++|.++|+++.++.
T Consensus 230 ~s~~a~~y~~La~el~~~~ 248 (273)
T PRK13232 230 ESNQAKEYLTLAHNVQNND 248 (273)
T ss_pred CChHHHHHHHHHHHHHhCC
Confidence 9999999999999988653
No 4
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=4.2e-34 Score=269.78 Aligned_cols=238 Identities=24% Similarity=0.326 Sum_probs=185.3
Q ss_pred ccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc----c----ccCCCCCcee
Q 014511 63 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTII 134 (423)
Q Consensus 63 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~----~----~~~~~~~~i~ 134 (423)
.+.++|+++|+|+|+||||||||+|+|||++|++.|+||++||+|++.++++.++|.+... . ......+.+.
T Consensus 9 ~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~ 88 (281)
T CHL00175 9 EKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALI 88 (281)
T ss_pred hhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhhee
Confidence 4456789999999999999999999999999999999999999999988888888876321 0 1111222333
Q ss_pred e-eccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 014511 135 P-TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 213 (423)
Q Consensus 135 ~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~ 213 (423)
. ..+++++++|++...... .+. ...+.++++.+.+..||||||||||+++...... +.++|.+++|++|+..
T Consensus 89 ~~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~ 161 (281)
T CHL00175 89 RDKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEIT 161 (281)
T ss_pred ecCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChH
Confidence 3 346899999987543221 122 2235556655542389999999999987654433 5678999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCC
Q 014511 214 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 293 (423)
Q Consensus 214 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p 293 (423)
++.++.++++.+++.+....++|+|++........ .....+++++.++.++++.||++..+.+|...|+|+..+.|
T Consensus 162 si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~ 237 (281)
T CHL00175 162 AIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQAN----DMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKK 237 (281)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhh----ccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCC
Confidence 99999999999998887778999999754321110 01135778889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 014511 294 CGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 294 ~s~~~~~~~~la~~i~~~ 311 (423)
+++++++|++||++|.++
T Consensus 238 ~~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 238 LTLSGIAFENAARRLVGK 255 (281)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999988875
No 5
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=5.2e-34 Score=265.01 Aligned_cols=227 Identities=25% Similarity=0.345 Sum_probs=176.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc---cc----cCCCCCceeeeccCCce
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL---LE----MNPEKRTIIPTEYLGVK 142 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~---~~----~~~~~~~i~~~~~~~l~ 142 (423)
|+|+|+|+||||||||+|+|||.+|+++|+||++||+|+|+++++.++|.+... .. .....+.+. ....|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIY-EGPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheE-eCCCCEE
Confidence 589999999999999999999999999999999999999988888888875421 11 111122222 2346899
Q ss_pred EEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 143 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 143 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
++|++.......... ...+.+++..+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.+..
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775432221111 223455555443 689999999999998765544 5578999999999999999988888
Q ss_pred HHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHHHH
Q 014511 223 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 302 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~ 302 (423)
+.++..+.+..++|+|++..... ....+++++.++.++++.||++..+.+|...|+|+.++.|+++++++|+
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~--------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 224 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKT--------ELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFM 224 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhh--------hhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHH
Confidence 88887788889999999643211 1234667777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014511 303 DLGVCVVQQC 312 (423)
Q Consensus 303 ~la~~i~~~~ 312 (423)
+|+++|..+-
T Consensus 225 ~la~~i~~~~ 234 (251)
T TIGR01969 225 ELAAELAGIE 234 (251)
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 6
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.9e-34 Score=245.54 Aligned_cols=230 Identities=22% Similarity=0.307 Sum_probs=182.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccccc--------CCC-CCceeeecc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM--------NPE-KRTIIPTEY 138 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~--------~~~-~~~i~~~~~ 138 (423)
|+++|.|+||||||||||+++||+.+||++|+||++||+|..--+++..+|.+.++... ... ...+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 67899999999999999999999999999999999999999888899999998763211 111 233445567
Q ss_pred CCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
+++.++|+....+... +..+.+.+.+.++.+ .+|||||+|||.|+..-... ++..+|.+++|++|+..|++++
T Consensus 81 ~nL~lLPAsQtrdKda-lt~E~v~~vv~eL~~----~~fDyIi~DsPAGIE~G~~~--A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKDA-LTPEGVKKVVNELKA----MDFDYIIIDSPAGIEQGFKN--AVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCccc-CCHHHHHHHHHHHHh----cCCCEEEecCcchHHHHHHh--hhhccceEEEEcCCCccccccc
Confidence 8999999876544322 333444455555542 68999999999998754333 3667899999999999999999
Q ss_pred HHHHHHHHcCC----CC---EEEEEEecccccC--CCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceE
Q 014511 219 AKGVRMFSKLK----VP---CIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 289 (423)
Q Consensus 219 ~~~~~~l~~~~----~~---~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~ 289 (423)
.|.+..++..+ .. ...+++||+++.. +++. -..+++.+.+.+|+++.||.++.+-.|.+.|.|+.
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeM------lsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~ 227 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEM------LSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVI 227 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCc------ccHHHHHHHhCCceEEeecCchhhheecCCCCCeE
Confidence 99999887543 22 3678999976543 2221 25789999999999999999999999999999998
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q 014511 290 AADPCGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 290 ~~~p~s~~~~~~~~la~~i~~~ 311 (423)
.. +.+.++++|+++|++++.+
T Consensus 228 l~-~~~~a~~Ay~d~arRllGe 248 (272)
T COG2894 228 LD-DNSDAGKAYRDIARRLLGE 248 (272)
T ss_pred eC-CCchHHHHHHHHHHHHhCC
Confidence 65 4669999999999888764
No 7
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3e-33 Score=262.76 Aligned_cols=233 Identities=20% Similarity=0.184 Sum_probs=165.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc------CCCCCceeeeccCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM------NPEKRTIIPTEYLG 140 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~------~~~~~~i~~~~~~~ 140 (423)
||+|+|+ +||||||||+|+|||++||++|+|||+||+|||++++..++|... .+.+. ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 4899999 799999999999999999999999999999999998877754321 11110 11122344455689
Q ss_pred ceEEcCCCCCCccccc-CCchHH-HHHHHHHHhc-ccCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCcchHH
Q 014511 141 VKLVSFGFSGQGRAIM-RGPMVS-GVINQLLTTT-EWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 141 l~~l~~~~~~~~~~~~-~~~~~~-~~l~~ll~~~-~~~~yD~iiiD~pp~~~~~~-~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
++++|++......... +..... ..++.+ ... ..++||||||||++++.... .....+.++|.+++|++|+..|+.
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~ 158 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQL-GAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMY 158 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhh-chhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHH
Confidence 9999976332211100 010000 123322 111 12679999999976653211 111112378999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++.++++.+++ .++++.|+|+|+.... ..++..+++.+.++.++++.||++..+.+|...|+|++++.
T Consensus 159 g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~--------~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~ 230 (274)
T PRK13235 159 AANNICKGILKYADAGGVRLGGLICNSRKVD--------NEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYD 230 (274)
T ss_pred HHHHHHHHHHHHhhcCCCceeEEEEecCCCC--------chHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEEC
Confidence 99888876654 3566789999963211 12346788888999888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~ 311 (423)
|+++++++|.+|++++.++
T Consensus 231 p~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 231 PTHPQADEYRALARKIDEN 249 (274)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998755
No 8
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=1.8e-33 Score=260.50 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=170.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc--------ccCCCCCceeeeccCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 140 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~ 140 (423)
||+|+|+|+||||||||+|+|||+.||++|+||++||+|+|++ ++.++|.+.... ......+.+.. ...|
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL-LRLHFGMDWSVRDGWARALLNGEPWAAAAYR-SSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch-HHHHhCCCCccCCcHHHHHhcCCChHHhHhh-cCCC
Confidence 5899999999999999999999999999999999999999974 666666543211 00011112222 3478
Q ss_pred ceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 141 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 141 l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
++++|++.................++++++.+.+..||||||||||+.+.....+ +.++|.+++|+.|+..++..+.+
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976432211111111123456677776654457999999999988765544 56889999999999999998884
Q ss_pred -HHHHHHcCCC-CEEEEEEecccccCCCceeeccCCChHHHHHHHhCCC-eEEeecCchhhhhcccCCCceEeeCCCCHH
Q 014511 221 -GVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPEVAADPCGEV 297 (423)
Q Consensus 221 -~~~~l~~~~~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~ 297 (423)
+.++++..+. ...++|+|++.... ...++..+.+.+.++.+ +.+.||++..+.++...|+|++++.|++++
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~ 230 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPAR------QLSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQA 230 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcch------hhHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHH
Confidence 4455553332 23789999964322 11234556677888876 457799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014511 298 ANTFQDLGVCVVQQC 312 (423)
Q Consensus 298 ~~~~~~la~~i~~~~ 312 (423)
+++|++|+++|++++
T Consensus 231 ~~~~~~la~~~l~~~ 245 (246)
T TIGR03371 231 AHDIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999876
No 9
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=4.2e-33 Score=262.12 Aligned_cols=233 Identities=16% Similarity=0.179 Sum_probs=169.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCcccCCCCCc--cccc-------CCCCCceeeec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLEM-------NPEKRTIIPTE 137 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~~~~~~~~~~~~~--~~~~-------~~~~~~i~~~~ 137 (423)
|+|+|+|+ +||||||||+|+|||++||+ +|+|||+||+|||++++..++|.... +.+. ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 67999999 89999999999999999997 59999999999999887766664421 1110 01123345556
Q ss_pred cCCceEEcCCCCCCccccc-CCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhh--cCCCeEEEEeCCCcch
Q 014511 138 YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLA 214 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~--~~~d~~iiv~~p~~~s 214 (423)
.+|++++|++......... +.......+...++.+. ++||||||||++.+....+.. .+ .++|.+++|++|+..|
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al~~-~~~~~aad~viIp~~p~~~s 157 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGFAM-PIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeeccccc-cchhccCceEEEeccccHHH
Confidence 7899999987543221111 11111112444444443 789999999955332111110 00 1689999999999999
Q ss_pred HHHHHHHHHHHH----cCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEe
Q 014511 215 FIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 290 (423)
Q Consensus 215 ~~~~~~~~~~l~----~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~ 290 (423)
+.++.++++.+. +.++++.|+|+|+.. .. ..+...+++.+.++.++++.||++..+.+|...|+|+++
T Consensus 158 l~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~~------~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~pv~~ 229 (275)
T PRK13233 158 IYAANNICKGLVKYAEQSGVRLGGIICNSRN--VD------GELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKTVVE 229 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--CC------cHHHHHHHHHHHcCCceeeecCcchHHHHHHHcCCCEEE
Confidence 999998876653 456778999999732 11 112467889999998888999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q 014511 291 ADPCGEVANTFQDLGVCVVQQ 311 (423)
Q Consensus 291 ~~p~s~~~~~~~~la~~i~~~ 311 (423)
+.|+++++++|.++++++.++
T Consensus 230 ~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 230 FDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred ECCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999775
No 10
>PRK13236 nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=262.67 Aligned_cols=234 Identities=19% Similarity=0.160 Sum_probs=171.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc---------CCCCCceeeec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM---------NPEKRTIIPTE 137 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~---------~~~~~~i~~~~ 137 (423)
+++|+| +|||||||||+|+|||+.||++|+|||+||+|+|++++..+++... .+.+. ....+.+ .+.
T Consensus 6 ~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i-~~~ 83 (296)
T PRK13236 6 IRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVM-LTG 83 (296)
T ss_pred ceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhh-eeC
Confidence 489999 7899999999999999999999999999999999999998887543 22111 1112233 355
Q ss_pred cCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 138 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~-~~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
..|++++|++...... ...+......++.+.....|++||||+|||++.... .......+.++|.+++|++|+..|+.
T Consensus 84 ~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~ 162 (296)
T PRK13236 84 FRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMY 162 (296)
T ss_pred CCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHH
Confidence 6799999987433221 122222222345554444468999999999654321 11111113478999999999999999
Q ss_pred HHHHHHHHH----HcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++.++.+.+ ...++++.|+|+||. +... .....+++++.++.++++.||++..+.+|...|+|++.+.
T Consensus 163 g~~~~~~~l~k~~~~~~l~i~gIv~Nr~--~~~~------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~~ 234 (296)
T PRK13236 163 AANNIARGILKYAHTGGVRLGGLICNSR--NVDR------EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEYA 234 (296)
T ss_pred HHHHHHHHHHHHhhCCCceeEEEEecCC--CCcc------hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhcC
Confidence 887554433 344678899999983 2211 1135688999999888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~~~ 313 (423)
|+++++++|.++|+++.++..
T Consensus 235 p~s~~a~~y~~La~ell~~~~ 255 (296)
T PRK13236 235 PDSNQGNEYRALAKKIINNDN 255 (296)
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999987653
No 11
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=1.5e-32 Score=258.01 Aligned_cols=234 Identities=19% Similarity=0.204 Sum_probs=168.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc------C--CCCCceeeecc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM------N--PEKRTIIPTEY 138 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~------~--~~~~~i~~~~~ 138 (423)
||+|+|+ +||||||||+|+|||.+||++|+||++||+|||++++..+++... .+... . ...+. .....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDV-IFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhh-eeecC
Confidence 5899999 699999999999999999999999999999999987766655221 11100 0 11222 33446
Q ss_pred CCceEEcCCCCCCcccccCCch--HHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~~~~~~~d~~iiv~~p~~~s~ 215 (423)
+|++++|++............. ....++. ++.+. ++|||||||||+......+ ....+.++|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 7999999875432221111111 1112333 23333 6899999999875532111 1111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEee
Q 014511 216 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 291 (423)
Q Consensus 216 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~ 291 (423)
.++.++++.+.+. +.++.++|.|+.. . ..+++..+++.+.++.++++.||++..+.+|...|+|++++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~ 228 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRN--T------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEY 228 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCC--C------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEe
Confidence 9988887666543 5678889988732 1 12234677888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 014511 292 DPCGEVANTFQDLGVCVVQQCAK 314 (423)
Q Consensus 292 ~p~s~~~~~~~~la~~i~~~~~~ 314 (423)
.|+++++++|+++++++.++...
T Consensus 229 ~p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 229 DPESKQADEYRELARKIVENKLL 251 (270)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999886544
No 12
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=100.00 E-value=5.4e-32 Score=254.61 Aligned_cols=223 Identities=19% Similarity=0.150 Sum_probs=165.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC-cccc----------cCCCCCceeeeccCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE----------MNPEKRTIIPTEYLG 140 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~-~~~~----------~~~~~~~i~~~~~~~ 140 (423)
|+|++ ||||||||+|+|||++||++|+|||+||+|||++.+..+.|... .+.. .....+.+ ....+|
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~ 80 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVI-YKGYGG 80 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheE-EeCCCC
Confidence 88885 99999999999999999999999999999999987766545321 1110 01122333 334679
Q ss_pred ceEEcCCCCCCcccc--cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 141 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 141 l~~l~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
++++|++........ .........++.+ ... ++||||||||++++....+ .+.+.++|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHHH
Confidence 999998865432221 1111112233332 222 4799999999887543222 122557899999999999999999
Q ss_pred HHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCC
Q 014511 219 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 294 (423)
Q Consensus 219 ~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~ 294 (423)
.++++.++.. +++..|+|+||+.. +...+++.+.++.+++..||++..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 225 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK-----------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES 225 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc-----------hhHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCC
Confidence 9998877654 46688999999631 13567788889999999999999999999999999999999
Q ss_pred CH----HHHHHHHHHHHHHHH
Q 014511 295 GE----VANTFQDLGVCVVQQ 311 (423)
Q Consensus 295 s~----~~~~~~~la~~i~~~ 311 (423)
++ .+++|.+||++|.++
T Consensus 226 s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 226 EPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred CcchhHHHHHHHHHHHHHHhC
Confidence 98 589999999998765
No 13
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=2.9e-32 Score=255.88 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=173.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc----c----ccCCCCCceeee-cc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTIIPT-EY 138 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~----~----~~~~~~~~i~~~-~~ 138 (423)
|+|+|+|+|+||||||||+|+|||++|+++|++|++||+|+|+++++.++|.+... . ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 67999999999999999999999999999999999999999988888888865321 1 111111223222 35
Q ss_pred CCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
+|++++|++.... ...+. ...+.++++.+.+..||||||||||+++...... +.++|.+++|++|+..++.++
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7999999875432 11111 1234455555443579999999999998765544 667899999999999999999
Q ss_pred HHHHHHHHcC-------CCC-EEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEe
Q 014511 219 AKGVRMFSKL-------KVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 290 (423)
Q Consensus 219 ~~~~~~l~~~-------~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~ 290 (423)
.++++.+... +.+ ..++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~- 228 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI- 228 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhh----cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-
Confidence 9999887632 112 2588999865332110 00123678888999999999999999999999999998
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 014511 291 ADPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 291 ~~p~s~~~~~~~~la~~i~~ 310 (423)
+.|+++.+++|++|+++|.+
T Consensus 229 ~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 229 LDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred eCCCCHHHHHHHHHHHHHhC
Confidence 67889999999999998764
No 14
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=3.3e-32 Score=256.41 Aligned_cols=234 Identities=18% Similarity=0.155 Sum_probs=165.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC-ccccc--------CCCCCceeeeccC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLEM--------NPEKRTIIPTEYL 139 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~-~~~~~--------~~~~~~i~~~~~~ 139 (423)
|++|+|+ +||||||||+|+|||++||++|+|||+||+|||++++..+.+... .+.+. ....+.+.+ ..+
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYE-GFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheee-CCC
Confidence 6899999 799999999999999999999999999999999987776543211 11100 122334443 468
Q ss_pred CceEEcCCCCCCcccccCCchH--HHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 014511 140 GVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 140 ~l~~l~~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
|++++|++.............. ...++. +..+.+.+||||||||+++.....+ ....+.++|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 9999998754322111100110 111222 1122224799999999775532111 11224468999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++.++++.++. .+.++.|++.|+- ... ...+..+++++.++.++++.||++..+.+|...|+|++++.
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r-~~~-------~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGR-SVI-------DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEecc-CCC-------chhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 99888776653 3556677875531 110 01246788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~~~ 313 (423)
|.++++++|.++++++.++..
T Consensus 230 p~~~~a~~y~~La~ell~~~~ 250 (279)
T PRK13230 230 PDSEISNIFRELAEAIYENNT 250 (279)
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999987644
No 15
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=4.9e-32 Score=248.35 Aligned_cols=233 Identities=27% Similarity=0.321 Sum_probs=180.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHH-HHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc-------ccCCCCCceeeeccC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-------EMNPEKRTIIPTEYL 139 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nL-A~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~ 139 (423)
|+++|+|+|+||||||||+|+|| |..++.+|++|++||+|+..++++.++|..+... +.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 57899999999999999999999 5555566888899999999999999999876322 222234455555558
Q ss_pred CceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 140 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 140 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
|+++||++........+........+.++. ..|||||||||+|++...+.. +..+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887766655555454455555553 677999999999999776555 4566999999999999999999
Q ss_pred HHHHHHHcCCCCEEE--EEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHH
Q 014511 220 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 297 (423)
Q Consensus 220 ~~~~~l~~~~~~~~g--vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~ 297 (423)
.+++.+.+.+.+..+ +|+||+........ ......+..+++ +.+..+|+++.+.++...|.|+..+.|++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~----~~~~~~~~~~~~--~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~a 227 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVD----VAALLIQVVKQV--PVLQVIPFDPEVRRALAEGKPIVLYSPNSKA 227 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhH----HHHHHHHHHHhC--CceeEeccChHHHHHhhcCCcEEEeCCCCHH
Confidence 999999999988877 99999852222110 001223333333 3678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014511 298 ANTFQDLGVCVVQQCA 313 (423)
Q Consensus 298 ~~~~~~la~~i~~~~~ 313 (423)
++++.++|..+.+...
T Consensus 228 s~ai~~lA~~l~~~~~ 243 (262)
T COG0455 228 SQAIKELAAKLAGLPE 243 (262)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998887543
No 16
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.3e-32 Score=258.33 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=168.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc--------CCCCCceeeec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTE 137 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~--------~~~~~~i~~~~ 137 (423)
.|++|+|. +||||||||+++|||.+|+++|+|||+||+|||++++..+++... .+.+. ....+.+..+.
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 35899997 999999999999999999999999999999999998876655322 11111 11112223455
Q ss_pred cCCceEEcCCCCCCcccccCCchHHHHHH-HHHHhcc-cCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcch
Q 014511 138 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~-~~~yD~iiiD~pp~~~~~~~-~~~~~~~~d~~iiv~~p~~~s 214 (423)
.+|++++|++...... ........++ ..++.+. .++||||||||+++.....+ ......++|.+++|++|+..|
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6899999987533221 1111111222 2333321 26899999999654321111 110013789999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEe
Q 014511 215 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 290 (423)
Q Consensus 215 ~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~ 290 (423)
+.++.++++.+++. +++..|+|+|+.... ..+...+++.+.++.+++..||++..+.++...|+|++.
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~--------~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~ 230 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTD--------RELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIE 230 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCc--------hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEE
Confidence 99999998777654 466889999963311 122457788888998888899999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 014511 291 ADPCGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 291 ~~p~s~~~~~~~~la~~i~~~~ 312 (423)
+.|.++++++|.+|++++.++.
T Consensus 231 ~~p~s~aa~~y~~La~ell~~~ 252 (295)
T PRK13234 231 YAPDSKQAGEYRALAEKIHANS 252 (295)
T ss_pred ECCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999997764
No 17
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-32 Score=254.01 Aligned_cols=229 Identities=18% Similarity=0.157 Sum_probs=164.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCC-CCcccc----------cCCCCCceeee
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE----------MNPEKRTIIPT 136 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~~~ 136 (423)
|+|+|+|. +||||||||+|+|||++||++|+|||+||+|||++.+..+.+. ...+.+ .....+.+ ..
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~~ 78 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFV-YE 78 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHhe-ee
Confidence 67999998 7999999999999999999999999999999998765444221 111110 00112233 33
Q ss_pred ccCCceEEcCCCCCCcccc--cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 014511 137 EYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 137 ~~~~l~~l~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s 214 (423)
..+|++++|++........ .........++.+ .+ +++||||||||+++.....+ ...+.++|.+++|++|+..+
T Consensus 79 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~s 154 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFDS 154 (270)
T ss_pred CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchhh
Confidence 4689999998765322211 1111111223331 12 36899999999876643221 12255789999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEe
Q 014511 215 FIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 290 (423)
Q Consensus 215 ~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~ 290 (423)
+.++.++++.++. .++++.|+|+||+.. ....+++.+.++.+++..||++..+.+|...|+|+++
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~ 223 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFE 223 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----------HHHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhh
Confidence 9999988887653 356678999999531 1346778888999999999999999999999999999
Q ss_pred eCCCC----HHHHHHHHHHHHHHHHHH
Q 014511 291 ADPCG----EVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 291 ~~p~s----~~~~~~~~la~~i~~~~~ 313 (423)
+.|++ +++++|+++++++.++..
T Consensus 224 ~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 224 MEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred hCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 98864 488999999999877544
No 18
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=100.00 E-value=8.5e-32 Score=251.55 Aligned_cols=229 Identities=24% Similarity=0.364 Sum_probs=174.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc----ccc----CCCCCceee-eccC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LEM----NPEKRTIIP-TEYL 139 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~----~~~----~~~~~~i~~-~~~~ 139 (423)
+|+|+|+|+||||||||+|+|||..|+++|+||++||+|+|+++++.++|.+... .+. ....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 4799999999999999999999999999999999999999988888888865321 000 011112221 1346
Q ss_pred CceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 140 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 140 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
|++++|++..... .... ...+.++++.+. +.||||||||||+.+...... +.++|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 8999997753221 1111 123455555543 689999999999998654433 5678999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHH
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 299 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~ 299 (423)
++++.++..+....++|+|++........ .....+++.+.++.++++.||++..+.+|...|+|+.++.+ +++++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~ 227 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKG----DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGK 227 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccc----cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHH
Confidence 99999998876678999999754321110 01136788888999999999999999999999999998755 89999
Q ss_pred HHHHHHHHHHH
Q 014511 300 TFQDLGVCVVQ 310 (423)
Q Consensus 300 ~~~~la~~i~~ 310 (423)
+|.+|+++|.+
T Consensus 228 ~~~~La~~l~~ 238 (261)
T TIGR01968 228 AFENIARRILG 238 (261)
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 19
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.9e-32 Score=249.32 Aligned_cols=204 Identities=42% Similarity=0.633 Sum_probs=167.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--ccccCC---CCCceeeeccCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNP---EKRTIIPTEYLGV 141 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~~~~~---~~~~i~~~~~~~l 141 (423)
+..++|+|+|+|||+||||+|+|||.+||+.|+||++||+|.++++++.+||.+.. ...... ....+......++
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceE
Confidence 46789999999999999999999999999999999999999999999999998642 121111 1112222223456
Q ss_pred eEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 142 KLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
++++.+. ....|++++.+..+++|+..+.|..|||||||+||++++..++..+.. .|.+++|++|+.....++++.
T Consensus 135 si~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~-~~g~viVt~p~~~~~~~v~ka 210 (265)
T COG0489 135 SILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI-PDGVVIVTTPGKTALEDVKKA 210 (265)
T ss_pred EEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc-CCeEEEEeCCccchHHHHHHH
Confidence 6665544 667799999999999999999988899999999999999888776654 469999999999999999999
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhh
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA 280 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~ 280 (423)
++++++.+.+++|+|+||.++.+.... .+..+.+.+.++ ++++.+|.+..+.+
T Consensus 211 ~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 211 IDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred HHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhh
Confidence 999999999999999999888773221 356788888888 89999999876654
No 20
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.98 E-value=2.9e-31 Score=249.65 Aligned_cols=233 Identities=21% Similarity=0.241 Sum_probs=165.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--cc---ccC----CCCCceeeeccCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMN----PEKRTIIPTEYLG 140 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~---~~~----~~~~~i~~~~~~~ 140 (423)
++|+|+ |||||||||+|+|||++||++|+||++||+|+|++++..+++.... +. ... ...+.+......|
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 79 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCC
Confidence 479998 6999999999999999999999999999999999887766553322 11 000 1122233455789
Q ss_pred ceEEcCCCCCCcccc-cCCchH-HHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHH
Q 014511 141 VKLVSFGFSGQGRAI-MRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 141 l~~l~~~~~~~~~~~-~~~~~~-~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
++++|++........ ...... ...++.+ ..+. ++||||||||++......+ ......++|.+++|++|+..++.+
T Consensus 80 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~ 157 (275)
T TIGR01287 80 IRCVESGGPEPGVGCAGRGVITAINLLEEL-GAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYA 157 (275)
T ss_pred EEEEeCCCCCccCCCccchhhhHHHHHHHh-hhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHH
Confidence 999997643322111 110100 1123332 2233 6899999999765432111 111133689999999999999999
Q ss_pred HHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCC
Q 014511 218 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 293 (423)
Q Consensus 218 ~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p 293 (423)
+.++++.+.. .+.+..++|.|+.. .. ...+..+++.+.++.++++.||++..+.+|...|+|++++.|
T Consensus 158 ~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (275)
T TIGR01287 158 ANNICKGILKYAKSGGVRLGGLICNSRN--VD------DEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDP 229 (275)
T ss_pred HHHHHHHHHHHHhcCCCeeeEEEEcCCC--Cc------hHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeCC
Confidence 8887765433 35667788888632 11 122356788888998888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 014511 294 CGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 294 ~s~~~~~~~~la~~i~~~~~ 313 (423)
+++++++|+++++++.++.+
T Consensus 230 ~s~~a~~~~~la~ell~~~~ 249 (275)
T TIGR01287 230 ESEQANEYRELAKKIYENTE 249 (275)
T ss_pred CCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988653
No 21
>PRK10037 cell division protein; Provisional
Probab=99.98 E-value=1.1e-31 Score=248.76 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=157.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--------ccccCCCCCceeeeccCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 140 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~ 140 (423)
||+|+|.|.||||||||+|+|||+.||++|+||++||+|+|+ ++..++|.... +.......+.+... .+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 579999999999999999999999999999999999999997 44455554321 11111122223332 479
Q ss_pred ceEEcCCCCCCcc-cccCC-chHHHHHHHHHHhccc-CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 141 VKLVSFGFSGQGR-AIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 141 l~~l~~~~~~~~~-~~~~~-~~~~~~l~~ll~~~~~-~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
++++|++...... ..... ......+...++.+.. ++||||||||||+.+..... .+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~--al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQ--LLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHH--HHHhCCEEEEEcCcCHHHH--
Confidence 9999986221110 00000 0111235555555421 58999999999998865443 4678899999999986653
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHh---CCCeEE-eecCchhhhhcccCCCceEeeCC
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHLF-DLPIRPTLSASGDSGMPEVAADP 293 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~ip~~~~i~~a~~~g~pi~~~~p 293 (423)
++..+........+++|++.... ...+++.+.+ +.+++. .||.+..+.+|...|+|++++.|
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~~----------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~ 220 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIGS----------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRS 220 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCccc----------HHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCC
Confidence 33333322233567788864211 2334444443 444553 58999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccc
Q 014511 294 CGEVANTFQDLGVCVVQQCAKIRQQ 318 (423)
Q Consensus 294 ~s~~~~~~~~la~~i~~~~~~~~~~ 318 (423)
+++++++|+.+++++++.+...+..
T Consensus 221 ~s~aa~~~~~l~~el~~~~~~~~~~ 245 (250)
T PRK10037 221 DSLAAEEILTLANWCLLHYSGLKTP 245 (250)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999998876543
No 22
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.98 E-value=8.2e-32 Score=264.28 Aligned_cols=228 Identities=21% Similarity=0.206 Sum_probs=164.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc--------c-------ccCCCCCc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKRT 132 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~--------~-------~~~~~~~~ 132 (423)
.+++|+|+|.||||||||+|+|||+.||++|+|||+||+|||+ +++.++|..... . ......+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~ 198 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDV 198 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHHh
Confidence 5699999999999999999999999999999999999999996 556666653211 0 01122344
Q ss_pred eeeeccCCceEEcCCCCCCcccc----------cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCC
Q 014511 133 IIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT 202 (423)
Q Consensus 133 i~~~~~~~l~~l~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d 202 (423)
+.++.++|++++|++......+. .........|+..++.+. ++||||||||||+++..+ ...+.++|
T Consensus 199 i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t--~~al~aAd 275 (405)
T PRK13869 199 IRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLT--LSGLCAAT 275 (405)
T ss_pred eeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHH--HHHHHHcC
Confidence 55677899999997753222111 011112234667777664 789999999999998654 44577899
Q ss_pred eEEEEeCCCcchHHHHHHHHHHH-------HcC--C--CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-E
Q 014511 203 AAVIVTTPQKLAFIDVAKGVRMF-------SKL--K--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-F 270 (423)
Q Consensus 203 ~~iiv~~p~~~s~~~~~~~~~~l-------~~~--~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 270 (423)
.+++|+.|+..++.++..+++++ ++. + ...+++++||+.... ..++...+.+.+.++..++ .
T Consensus 276 ~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~------~~~~~~~~~l~~~~~~~vl~~ 349 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD------APQTKVAALLRNMFEDHVLTN 349 (405)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC------cHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999888887632 222 2 346789999964322 1233567788888886554 4
Q ss_pred eecCchhhhhcccCCCceEeeCCCCHHHHHHHHHH
Q 014511 271 DLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLG 305 (423)
Q Consensus 271 ~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la 305 (423)
.||.+..+.+|...|+|++++.|.+..++.|....
T Consensus 350 ~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~ 384 (405)
T PRK13869 350 PMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAM 384 (405)
T ss_pred cCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHH
Confidence 58889999999999999999988754444443333
No 23
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.98 E-value=2.2e-31 Score=249.50 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=163.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC-Cccccc---------CCCCCceeeeccCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEM---------NPEKRTIIPTEYLG 140 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~-~~~~~~---------~~~~~~i~~~~~~~ 140 (423)
+|+|. +||||||||+|+|||++||++|+|||+||+|+|++++..+.+.. ..+.+. ....+.+.....+|
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYGG 80 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCCC
Confidence 68899 89999999999999999999999999999999987665443321 111110 11112223345689
Q ss_pred ceEEcCCCCCCccc--ccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 141 VKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 141 l~~l~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
++++|++....... ..........++.+ .. +++||||||||++++...... ..+.++|.+++|+.|+..++.++
T Consensus 81 l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~~~ 156 (268)
T TIGR01281 81 VDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALFAA 156 (268)
T ss_pred eEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHHHH
Confidence 99999876532211 11111112233332 12 368999999998876432211 22567899999999999999999
Q ss_pred HHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCC
Q 014511 219 AKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 294 (423)
Q Consensus 219 ~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~ 294 (423)
.++++.+++ .++++.|+|+||+... ...+++.+.++.+++..||.+..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~~~ 225 (268)
T TIGR01281 157 NRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEMEES 225 (268)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhCcc
Confidence 888877654 3577889999996432 2467788889999999999999999999999999999876
Q ss_pred C----HHHHHHHHHHHHHHHHHHH
Q 014511 295 G----EVANTFQDLGVCVVQQCAK 314 (423)
Q Consensus 295 s----~~~~~~~~la~~i~~~~~~ 314 (423)
+ ..+++|+++++++.++...
T Consensus 226 ~~~~~~~a~~~~~la~el~~~~~~ 249 (268)
T TIGR01281 226 GPELAAVTQEYLRMAEYLLAGPEG 249 (268)
T ss_pred cccchHHHHHHHHHHHHHHhcCCC
Confidence 5 4678999999998876443
No 24
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.98 E-value=2.4e-31 Score=248.68 Aligned_cols=233 Identities=20% Similarity=0.179 Sum_probs=168.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC-cccc---c--CCCCCceeeeccCCce
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE---M--NPEKRTIIPTEYLGVK 142 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~-~~~~---~--~~~~~~i~~~~~~~l~ 142 (423)
||+|+|. +||||||||+|+|||++|+++| |||+||+|||++.+..+++... .+.+ . ....+.+.....+|++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGIL 79 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeE
Confidence 6899999 6999999999999999999999 9999999999987766554321 1110 0 0112233345578999
Q ss_pred EEcCCCCCCcccc-cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 143 LVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 143 ~l~~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~-~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
++|++........ .........+...+..+ +++||||||||++......+. .....++|.+++|++|+..++.++.+
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~ 158 (264)
T PRK13231 80 CVESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANN 158 (264)
T ss_pred EEEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHH
Confidence 9998743221110 01100111122233333 378999999997755321111 11114789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHH
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 300 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~ 300 (423)
+++.++..+....+++.|+..... .....+++.+.++.+++..||.+..+.+|...|+|++++.|+++++++
T Consensus 159 ~~~~i~~~~~~~~~vv~~~~~~~~--------~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~~ 230 (264)
T PRK13231 159 IARGIKKLKGKLGGIICNCRGIDN--------EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQASV 230 (264)
T ss_pred HHHHHHHcCCcceEEEEcCCCCcc--------HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHHHH
Confidence 999998877667788888743111 224678888889988888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014511 301 FQDLGVCVVQQC 312 (423)
Q Consensus 301 ~~~la~~i~~~~ 312 (423)
|.+++++|.+++
T Consensus 231 ~~~la~el~~~~ 242 (264)
T PRK13231 231 YRKLANNIMNNT 242 (264)
T ss_pred HHHHHHHHHhcC
Confidence 999999999865
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.97 E-value=1.3e-30 Score=244.22 Aligned_cols=225 Identities=20% Similarity=0.175 Sum_probs=161.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCC-CCcccc----------cCCCCCceeeecc
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE----------MNPEKRTIIPTEY 138 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~~~~~ 138 (423)
++|+|+ +||||||||+|+|||++||++|+|||+||+|||++....+.+. ...+.+ .....+.+ ...+
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGY 78 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheE-EECC
Confidence 378999 6999999999999999999999999999999998654433221 111111 11122333 3456
Q ss_pred CCceEEcCCCCCCccc--ccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 139 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
+|++++|++....... ..........++.+ . . .++||||||||+|+.....+. ..+.++|.+++|++|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~~-~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGFA-APLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccch-hhhhhcCEEEEEecCCcccHH
Confidence 8999999876432211 11111111233331 1 2 368999999998876533211 125578999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
++.++++.++. .+++..|+|+||+... ...+++.+.++.+++..||++..+.+|...|+|++++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~ 223 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMD 223 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhC
Confidence 99988877653 3667789999996421 24567778899999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHH
Q 014511 293 PCGEV----ANTFQDLGVCVVQQ 311 (423)
Q Consensus 293 p~s~~----~~~~~~la~~i~~~ 311 (423)
|+++. +++|++|++++.++
T Consensus 224 ~~~~~a~e~a~~y~~La~~il~~ 246 (267)
T cd02032 224 ESDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred cccccccHHHHHHHHHHHHHHhc
Confidence 88765 67899999888764
No 26
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.97 E-value=4.1e-30 Score=224.01 Aligned_cols=167 Identities=57% Similarity=0.993 Sum_probs=133.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
+|+|+|+||||||||+|+|||..||+.|+||++||+|+|++++..++
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997654330
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 230 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~ 230 (423)
+++.....++.+++.+.+.+||||||||||+.++.......+..+|.+++|++|+..++.++.++++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01112234555555544478999999999999876654432357899999999999999999999999999999
Q ss_pred CEEEEEEecccccC--CCceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 231 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 231 ~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
+..|+|+||+...+ +.+....+..+..+++.+.++.++++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 99999999986532 23333334556889999999999999999874
No 27
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.6e-30 Score=242.58 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=171.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCCCCCCcccCCCCCc----cc---ccC-C--CCCceeee
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR----LL---EMN-P--EKRTIIPT 136 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~~~~~~~~~~~~~~----~~---~~~-~--~~~~i~~~ 136 (423)
||++|+|+|.||||||||+|+|||.+|| ..|+|||+||+|||+ ++..++|.... .. ... . .......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 5799999999999999999999999999 567999999999996 55555555432 11 000 0 1111122
Q ss_pred ccCCceEEcCCCCCCc-ccc-cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 014511 137 EYLGVKLVSFGFSGQG-RAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 137 ~~~~l~~l~~~~~~~~-~~~-~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s 214 (423)
..++++++|+...... ... .........++.+++.+ +++||||||||||+.+.... ..+.++|.+++|+.|+..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~l~~--nal~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGVLTL--NALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhHHHH--HHHHHcCeeEEecCchHHH
Confidence 4578999997654321 111 00112233455555433 37999999999999975544 4477889999999999999
Q ss_pred HHHHHHHHHHHHcCC------CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCe-EEeecCchhhhhcccCCCc
Q 014511 215 FIDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-LFDLPIRPTLSASGDSGMP 287 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ip~~~~i~~a~~~g~p 287 (423)
+.++..+++.+.... ....+++.|+...... ......+.+.+.++.++ ...||.+..+.++...|.|
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~ 229 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTK------LADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKP 229 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcc------hHHHHHHHHHHHhccccccccCcccccHHhHHHcCCC
Confidence 999888777665431 2567889898543331 22346677777776443 4558999999999999999
Q ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHh
Q 014511 288 EVAADPCGEVANTFQDLGVCVVQQCAKI 315 (423)
Q Consensus 288 i~~~~p~s~~~~~~~~la~~i~~~~~~~ 315 (423)
+..+.++++.+++|.+++.++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 230 LYEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred ceecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999987654
No 28
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=3.2e-30 Score=231.56 Aligned_cols=228 Identities=20% Similarity=0.218 Sum_probs=168.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccc--------cCCCCCceeeeccCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--------MNPEKRTIIPTEYLG 140 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~ 140 (423)
||+|+|.|.||||||||+|+|||+.|++.|++|++||+||++ .+...||.+..... .....+.. ....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~-~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAA-YRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHh-hccCCC
Confidence 789999999999999999999999999999999999999986 77777887643211 11111222 234579
Q ss_pred ceEEcCCCCCCcccc----cCCchHHHHHHHHHHhcc-cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 014511 141 VKLVSFGFSGQGRAI----MRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 141 l~~l~~~~~~~~~~~----~~~~~~~~~l~~ll~~~~-~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~ 215 (423)
++++|.|........ +.. . ...+.+.+..+. ...||+||||||||.+.....+ +..+|.+++|+.|+..|.
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~-~-~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~ 154 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQ-D-PQWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASH 154 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhc-C-HHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHH
Confidence 999999865432211 111 1 122333333332 3789999999999988665444 556899999999999987
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCC
Q 014511 216 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCG 295 (423)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s 295 (423)
..+.+. ... .-..+|+|++.... .++++..+-+.+.++..+.+.|..|+.+.||...++|+.+|+|.|
T Consensus 155 ~~L~q~-----~l~-~~~~~liNq~~~~s------~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S 222 (243)
T PF06564_consen 155 ARLHQR-----ALP-AGHRFLINQYDPAS------QLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHS 222 (243)
T ss_pred HHHHHh-----ccc-CCcEEEEeccCccc------hHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccC
Confidence 654431 111 23588999954433 345567777788888767788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014511 296 EVANTFQDLGVCVVQQCAK 314 (423)
Q Consensus 296 ~~~~~~~~la~~i~~~~~~ 314 (423)
.++++|..||.+++..+..
T Consensus 223 ~Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 223 QAAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999887654
No 29
>PHA02518 ParA-like protein; Provisional
Probab=99.97 E-value=6e-30 Score=231.39 Aligned_cols=204 Identities=22% Similarity=0.266 Sum_probs=148.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
|+|+|+|.||||||||+|+|||++|+++|+||++||+|+|+++..++ +.... +..++|...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~-~~~~~-----------------~~~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWA-EAREE-----------------GEPLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHH-Hhccc-----------------CCCCCchhh-
Confidence 58999999999999999999999999999999999999999766543 11100 001111110
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-
Q 014511 150 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 228 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~- 228 (423)
.+. .+...+..+. ..||||||||||+.+...... +.++|.+++|+.|+..++..+.++++.++..
T Consensus 62 -------~~~----~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MGK----SIRADLPKVA-SGYDYVVVDGAPQDSELARAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------ccH----HHHHHHHHHh-ccCCEEEEeCCCCccHHHHHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 011 2233333333 789999999999988665444 5678999999999999999888888776643
Q ss_pred ----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe-ecCchhhhhcccCCCceEeeCCCCHHHHHHHH
Q 014511 229 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-LPIRPTLSASGDSGMPEVAADPCGEVANTFQD 303 (423)
Q Consensus 229 ----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~ 303 (423)
+.+..++|.|+....... .. ...+..+.++.+++.. ++.+..+.++...|+|+.++.|.++++++|.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~~------~~-~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~~~~ 200 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQL------YR-EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQ 200 (211)
T ss_pred hhCCCCceEEEEEeccCCcchH------HH-HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHHHHH
Confidence 456778888885322111 11 2334444567777765 45556899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014511 304 LGVCVVQQCA 313 (423)
Q Consensus 304 la~~i~~~~~ 313 (423)
|++++.+++.
T Consensus 201 l~~ei~~~~~ 210 (211)
T PHA02518 201 LVKELFRGIS 210 (211)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 30
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.97 E-value=4.7e-30 Score=252.08 Aligned_cols=234 Identities=21% Similarity=0.230 Sum_probs=165.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc--------c-------ccCCCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 131 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~--------~-------~~~~~~~ 131 (423)
..+++|+|+|.||||||||+|+|||.+||++|+|||+||+|+|+ +++.++|..... . ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 45689999999999999999999999999999999999999997 566666653221 0 0112234
Q ss_pred ceeeeccCCceEEcCCCCCCcccc-----c-C----CchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCC
Q 014511 132 TIIPTEYLGVKLVSFGFSGQGRAI-----M-R----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 201 (423)
Q Consensus 132 ~i~~~~~~~l~~l~~~~~~~~~~~-----~-~----~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~ 201 (423)
.+.++..+|++++|++........ + . .......+...++.+. +.||||||||||+++.... ..+.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~--~al~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTL--SALCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHH--HHHHHc
Confidence 455566789999997643211110 0 0 1111234566666654 7899999999999986544 447789
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-------HHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-
Q 014511 202 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 269 (423)
Q Consensus 202 d~~iiv~~p~~~s~~~~~~~~~~-------l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 269 (423)
|.+++|+.|+..++.++..+++. ++.. +....++++|++..... ..+...+.+.+.++..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~------~~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDG------PQAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCc------cHHHHHHHHHHHhcccccc
Confidence 99999999999888776655443 3322 24467899999653321 223466778888886655
Q ss_pred EeecCchhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 014511 270 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 270 ~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~ 310 (423)
..||.+..+.+|...|.|++++.|++..+++|....+++.+
T Consensus 332 ~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~ 372 (387)
T TIGR03453 332 NPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDA 372 (387)
T ss_pred ccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999886555556555554444
No 31
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.97 E-value=1.5e-29 Score=246.66 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=166.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe-cCCCCCCcccCCCCCcc--------c----c-cCCCCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL--------L----E-MNPEKRT 132 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~-D~~~~~~~~~~~~~~~~--------~----~-~~~~~~~ 132 (423)
.++++|+|+|.||||||||+|+|||++||++|+|||+||+ |||++. ..++|..... . . .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl-t~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA-SMYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch-hhhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 4679999999999999999999999999999999999996 999865 4455543211 0 0 0112334
Q ss_pred eeeeccCCceEEcCCCCCCccc--c---c-CC---chHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCe
Q 014511 133 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 203 (423)
Q Consensus 133 i~~~~~~~l~~l~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~ 203 (423)
+.++.++|++++|++......+ . . .+ ......++..++.+. ++||||||||||+++..... .+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~n--al~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTIN--VVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHH--HHHHcCE
Confidence 5566778999999864321110 0 0 00 112345666776664 78999999999999865544 4778999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecC
Q 014511 204 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 204 ~iiv~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
+++|+.|+..++.++..+++++..+ + .+.+.+++|++...... ..+...+.+.+.||..++ ..||.
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-----~~~~~~~~l~~~~~~~vl~~~I~~ 334 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS-----QSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch-----HHHHHHHHHHHHhccccccccCcc
Confidence 9999999999999888777666532 1 13356889985322111 011244678888886544 35888
Q ss_pred chhhhhcccCCCceEeeCCCC--------HHHHHHHHHHHHHHHHHH
Q 014511 275 RPTLSASGDSGMPEVAADPCG--------EVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 275 ~~~i~~a~~~g~pi~~~~p~s--------~~~~~~~~la~~i~~~~~ 313 (423)
+..+.+|...+++++++.+.+ .+.+.|..+.++|.+++.
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~~ 381 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLI 381 (388)
T ss_pred cchHhhhhhcCCCceeEccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998643 245566667777766554
No 32
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.96 E-value=2.8e-29 Score=244.18 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=165.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe-cCCCCCCcccCCCCCccc--------c---c--CCCCCc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRLL--------E---M--NPEKRT 132 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~-D~~~~~~~~~~~~~~~~~--------~---~--~~~~~~ 132 (423)
..++||+|+|.||||||||+|+|||+.||++|+|||+||+ |||++ +..++|...... . . ......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~n-lt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGT-ASMYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC-cccccCcCccccccccccHHHHHhCCCcchHhh
Confidence 3479999999999999999999999999999999999996 99986 445666532110 0 0 112345
Q ss_pred eeeeccCCceEEcCCCCCCccc--c---c-CC---chHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCe
Q 014511 133 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 203 (423)
Q Consensus 133 i~~~~~~~l~~l~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~ 203 (423)
+.++.++|++++|++......+ . . .+ ......++..++.+. ++||||||||||+++.... ..+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~--nAL~AAd~ 259 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTI--NVVCAADV 259 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHH--HHHHHhCE
Confidence 5666789999999875321110 0 0 00 112345666777664 7899999999999996544 44778899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecC
Q 014511 204 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 204 ~iiv~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
+++|+.|+..++.++.++++++..+ + .+.+.+++||+.... .. ..+...+.+.+.||..++ ..||.
T Consensus 260 vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~-~~----~~~~i~~~l~~~~g~~vl~~~I~~ 334 (387)
T PHA02519 260 IVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTV-GN----QSRWMEEQIRNTWGSMVLRQVVRV 334 (387)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCC-ch----HHHHHHHHHHHHhccccccccCcC
Confidence 9999999999998887766655321 1 234668999854321 11 112245778889986554 44788
Q ss_pred chhhhhcccCCCceEeeCCCC--------HHHHHHHHHHHHHHHHH
Q 014511 275 RPTLSASGDSGMPEVAADPCG--------EVANTFQDLGVCVVQQC 312 (423)
Q Consensus 275 ~~~i~~a~~~g~pi~~~~p~s--------~~~~~~~~la~~i~~~~ 312 (423)
...+.+|...+++++++++.+ .+.+.+..+.++|.+.+
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~~~ 380 (387)
T PHA02519 335 TDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFNDL 380 (387)
T ss_pred cchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987655 24556666777776644
No 33
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.96 E-value=1.7e-28 Score=235.69 Aligned_cols=219 Identities=19% Similarity=0.216 Sum_probs=167.5
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc----ccC----CC----CCce
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----EMN----PE----KRTI 133 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~----~~~----~~----~~~i 133 (423)
...+++|+|+|+||||||||+|+|||.+|+++|+||++||+|+|++++..+||.+.... ... .. ....
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDA 169 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHh
Confidence 34689999999999999999999999999999999999999999999888888753210 000 00 0011
Q ss_pred eeeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 014511 134 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 213 (423)
Q Consensus 134 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~ 213 (423)
.+. .+|+++++++..... .. ....++.+++.+. +.||||||||||+.+.....+ +..+|.+++|++|+..
T Consensus 170 ~~~-~~~l~vl~~~~~~~~--~~----~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~~ 239 (322)
T TIGR03815 170 LPR-RGGLSVLSWGRAVGA--AL----PPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADVR 239 (322)
T ss_pred CCC-cCCeEEEecCCCCcC--CC----CHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcHH
Confidence 222 468999987754311 11 2344566666553 789999999999998764444 5678999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCC
Q 014511 214 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 293 (423)
Q Consensus 214 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p 293 (423)
++..+.++++.+...+. .+++|+|+... .....+++++.+|.++++.||++..+.++...|+|+. ..+
T Consensus 240 sl~~a~r~l~~l~~~~~-~~~lVv~~~~~----------~~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~ 307 (322)
T TIGR03815 240 AVAAAARVCPELGRRNP-DLRLVVRGPAP----------AGLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASR 307 (322)
T ss_pred HHHHHHHHHHHHhhhCC-CeEEEEeCCCC----------CCCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCC
Confidence 99999999998887654 35777776321 1124688999999999999999999999999999988 677
Q ss_pred CCHHHHHHHHHHH
Q 014511 294 CGEVANTFQDLGV 306 (423)
Q Consensus 294 ~s~~~~~~~~la~ 306 (423)
.++.++++..+.+
T Consensus 308 ~~~~~~~~~~~l~ 320 (322)
T TIGR03815 308 RRPLGRAAAEVLD 320 (322)
T ss_pred CCHHHHHHHHHHh
Confidence 8888888877654
No 34
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.96 E-value=1.1e-28 Score=217.08 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=144.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
+|+|+|+|||+||||+|+|||..|+++|+||++||+|+|++++..+++.+.... . +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------------~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------------Y-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC-------------c-c----------
Confidence 589999999999999999999999999999999999999887777655432100 0 0
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 230 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~ 230 (423)
+...+ .. |||||||||+.+...... +..+|.+++|+.|+..++..+.++++.++..+.
T Consensus 57 --------------~~~~~----~~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL----AG--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc----cC--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00000 01 999999999987654443 567899999999999999999999999998888
Q ss_pred CEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHHH
Q 014511 231 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTF 301 (423)
Q Consensus 231 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~ 301 (423)
+..++|+|++...... .....+++.+.++.+++..||++..+.++...|+|++++.|.++++++|
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 8899999997544311 1123577888899999999999999999999999999999999887654
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.96 E-value=3.3e-28 Score=219.87 Aligned_cols=194 Identities=21% Similarity=0.184 Sum_probs=136.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--cccc--------cCCCCCceeeeccC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEYL 139 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~--------~~~~~~~i~~~~~~ 139 (423)
++|+|+ +||||||||+|+|||.+||++|+|||+||+|||++++..+++... .+.. .....+.+.....+
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCC
Confidence 479999 599999999999999999999999999999999988776655432 1110 01111223445578
Q ss_pred CceEEcCCCCCCcccccCCch--HHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhc--CCCeEEEEeCCCcchH
Q 014511 140 GVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLAF 215 (423)
Q Consensus 140 ~l~~l~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~--~~d~~iiv~~p~~~s~ 215 (423)
|++++|++............. ....++ .+..+ +++||||||||++......+. ..+. ++|.+++|++|+..++
T Consensus 80 ~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl 156 (212)
T cd02117 80 GVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMAL 156 (212)
T ss_pred CcEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHH
Confidence 999999886543332211111 112333 34443 478999999997655321111 1133 6899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCc
Q 014511 216 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 216 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
.++.++++.++.. +.++.|+|+||+..+ .++...+++.+.++.++++.||++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 157 YAANNICKGIRKYAKSGGVRLGGLICNSRNTD--------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 9999888877764 566889999997543 122467899999999999999975
No 36
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.96 E-value=1.2e-27 Score=226.18 Aligned_cols=226 Identities=23% Similarity=0.336 Sum_probs=165.2
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--cccc---CC-CC-----Cceee
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---NP-EK-----RTIIP 135 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~~~---~~-~~-----~~i~~ 135 (423)
+..++|+|+ +|||+||||+++|||.+||++|+||++||+|+++++++.+||.... +.+. .. .. +.+..
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 467899998 6999999999999999999999999999999999999999885432 1111 00 00 11111
Q ss_pred eccCCceEEcCCCCCCcccccCCchHHHHHH--HHHHh---cccCCCcEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEe
Q 014511 136 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVT 208 (423)
Q Consensus 136 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~iiiD~pp~~~--~~~~~~~~~~~~d~~iiv~ 208 (423)
...|++++..+ ....|+++.....+. ++++. ..| +||||||||+++.. ...+..+ ...++.+++|+
T Consensus 108 -~~~gv~~~~~g----~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVVt 180 (329)
T cd02033 108 -KRDGVFAMELG----GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVVG 180 (329)
T ss_pred -EeCCEEEecCC----CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEeC
Confidence 23577777543 234566655433222 34443 356 79999999977543 1222222 12368899999
Q ss_pred CCCcchHHH---HHHHHHHHHcCC--CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhccc
Q 014511 209 TPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGD 283 (423)
Q Consensus 209 ~p~~~s~~~---~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~ 283 (423)
+|+..++.+ +.+.++++++++ .+++|+|+||+.. .+..+++++.+++++++.||+++.+.++..
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a~~ 249 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRKSA 249 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 999999975 556678888774 6789999999531 235789999999999999999999999999
Q ss_pred CCCceEeeCCCCHHHHHHHHHHHHHHHHHH
Q 014511 284 SGMPEVAADPCGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 284 ~g~pi~~~~p~s~~~~~~~~la~~i~~~~~ 313 (423)
+|+++ ..|.++++++|+++|+.|.+...
T Consensus 250 ~g~~~--~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 250 AYQIV--GRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred cCCee--cCCCCHHHHHHHHHHHHHHHhcC
Confidence 99854 56888999999999999987443
No 37
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.96 E-value=9.2e-28 Score=226.41 Aligned_cols=230 Identities=20% Similarity=0.229 Sum_probs=147.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--cccccC----------CCCCceeeec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 137 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~~----------~~~~~i~~~~ 137 (423)
|+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++..++|... .+.+.. ...+.+....
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 899999999999999999999999999999999999888876321 211110 0111222222
Q ss_pred cCCceEEcCCCCCCcccccCC---chHHHHHHHHHHhcc--cCCCcEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCC
Q 014511 138 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTE--WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTP 210 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~--~~~yD~iiiD~pp~~--~~~~~~~~~~~~~d~~iiv~~p 210 (423)
..+...-.............+ ... .....+++.+. ..+||||||||++.. +.. .......++|.+++|+.|
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~-~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~-~~~~a~~~Ad~viVvt~~ 157 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGI-IHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGF-ATPLARSLAEEVIVIGSN 157 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchh-hHHHHHHHHhhhhcccCCEEEEecCCCcccccc-ccchhhhhCCeEEEEecc
Confidence 221110000000000000000 000 01122222221 147999999996643 111 111123467999999999
Q ss_pred CcchHHHHHHHHH---HHHcCC--CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCC
Q 014511 211 QKLAFIDVAKGVR---MFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSG 285 (423)
Q Consensus 211 ~~~s~~~~~~~~~---~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g 285 (423)
+..++.++.++.+ ++++.+ ++++|+|+||+.. .+..+++++.+++++++.||+++.+.++. .+
T Consensus 158 e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~ 225 (296)
T TIGR02016 158 DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVGIPVLAAIPADEELRRKS-LA 225 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcCCCeEEECCCCHHHHHHh-cC
Confidence 9999877655544 555653 6789999999632 23568889999999999999999999844 33
Q ss_pred CceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 014511 286 MPEVAADPCGEVANTFQDLGVCVVQQCAK 314 (423)
Q Consensus 286 ~pi~~~~p~s~~~~~~~~la~~i~~~~~~ 314 (423)
.+.....+.+..++.|.++|++|.+++..
T Consensus 226 ~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 226 YQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444455666999999999999987664
No 38
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=99.96 E-value=4.2e-29 Score=192.08 Aligned_cols=87 Identities=33% Similarity=0.593 Sum_probs=75.3
Q ss_pred eeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCCC-c
Q 014511 322 AVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF-S 400 (423)
Q Consensus 322 ~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dgh-~ 400 (423)
.+.+++..+.|.|+|+||.+ +.|++.|||+|||||+|+++.++||.++...+|.+++|.+++.+|+|+|+|.|+||| +
T Consensus 2 ~i~l~~~~~~l~i~w~DG~~-~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~s 80 (89)
T PF06155_consen 2 EIKLDKDERHLEIEWSDGQE-SRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHDS 80 (89)
T ss_dssp EEEEECCTTEEEEEETTSEE-EEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB--
T ss_pred eEEEecCCCEEEEEECCCCE-EEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCce
Confidence 46778888999999999998 999999999999999999999999977899999999999999999999999999999 5
Q ss_pred ccCChHHHH
Q 014511 401 QIAPYDQLQ 409 (423)
Q Consensus 401 s~y~~~~L~ 409 (423)
|+|+|+|||
T Consensus 81 giY~~~~Lr 89 (89)
T PF06155_consen 81 GIYPWEWLR 89 (89)
T ss_dssp -EEEHHHHH
T ss_pred eEecHHHhC
Confidence 699999997
No 39
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.95 E-value=1.1e-26 Score=206.72 Aligned_cols=225 Identities=24% Similarity=0.302 Sum_probs=160.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc---------ccCCC----------
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL---------EMNPE---------- 129 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~---------~~~~~---------- 129 (423)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+.... .....
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 57899999999999999999999999875 89999999999999999998763210 00000
Q ss_pred ---CCceeeeccCCceEEc--------------CC---------------CCCCc-c----cc-cCCchHHHHHHHHHHh
Q 014511 130 ---KRTIIPTEYLGVKLVS--------------FG---------------FSGQG-R----AI-MRGPMVSGVINQLLTT 171 (423)
Q Consensus 130 ---~~~i~~~~~~~l~~l~--------------~~---------------~~~~~-~----~~-~~~~~~~~~l~~ll~~ 171 (423)
...+.........+.| .+ ..... . .+ ...+....++..+...
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 1111110000000000 00 00000 0 00 0111122344443333
Q ss_pred cccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeec
Q 014511 172 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 172 ~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.. +.-|++|||+|||++-..... +..+|.+++||+|+..++++++++++..+.++++ .++|+||. +.
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~--~~------- 226 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRY--NL------- 226 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecC--CC-------
Confidence 32 336999999999999766544 6688999999999999999999999999999998 68999995 22
Q ss_pred cCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 014511 252 FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~ 310 (423)
+....+++.+..|+|+++.||++..+.++...|.|+.. ++++.+..+...+.++.+
T Consensus 227 -g~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 227 -GDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred -CchHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence 22358899999999999999999999999999999988 788888888877666554
No 40
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.94 E-value=6.5e-25 Score=191.22 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=165.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCcccCCCCCccc-----------------c-------
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL-----------------E------- 125 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~~~~~~~~~~~~~~-----------------~------- 125 (423)
+|+|+ ||||+||||+|+-||..|..+ |++||+||+|+ ..+++..+|.+.... .
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 67887 999999999999988888776 49999999999 668888888764200 0
Q ss_pred -cCCCCCcee---eeccCCceEEcCCCCC---CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhh
Q 014511 126 -MNPEKRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 198 (423)
Q Consensus 126 -~~~~~~~i~---~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~ 198 (423)
.......+. ....++++++.+|... ....+.-+ .+++++++.+...+||+||+||-.|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~----allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMN----ALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHH----HHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 000001111 1234568888877543 34444333 355666666555779999999999987654444 3
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhh
Q 014511 199 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 278 (423)
Q Consensus 199 ~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i 278 (423)
-.+|.+++|+.|+.-|+..+.+..++.++++++.+++|+|++... .....+.....+.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~----------e~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE----------EELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch----------hHHHHhhhhccCCeEEEEccCCHHH
Confidence 467999999999999999999999999999999999999996432 1346677888899999999999999
Q ss_pred hhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 014511 279 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 279 ~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~ 310 (423)
.++-..|.|+.... .+.+++.++++.+.+
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~ 252 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIK 252 (255)
T ss_pred HhccccCCccccch---hhhHHHHHHHHHHHh
Confidence 99999999997753 677888888877764
No 41
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=1.5e-25 Score=197.29 Aligned_cols=178 Identities=27% Similarity=0.339 Sum_probs=123.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
.|+|+|+|||+||||+|+|||..| +||++||+|+++++++.++|.+......... .......+...+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 489999999999999999999999 7999999999999999999886532110000 000000111111111100
Q ss_pred CcccccCCchHHHHHHHHH-HhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 014511 151 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 229 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~ 229 (423)
++.. ..+.+.+ ....++.||||||||||+.++..... +..+|.+++|++|+..++.++.+.++.+++.+
T Consensus 74 -------~~~~-~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GKLV-TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HHHH-HHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 1111 1222222 11224799999999999998755443 55789999999999999999999999999888
Q ss_pred CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 230 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 230 ~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
.+ .++|+|++...... ....+++.+.+|.++++.||
T Consensus 144 ~~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 144 IP-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CC-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 77 58999997543211 12456778888999999987
No 42
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.93 E-value=2.4e-25 Score=202.28 Aligned_cols=204 Identities=19% Similarity=0.256 Sum_probs=132.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCC-ceEEcCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLG-VKLVSFG 147 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-l~~l~~~ 147 (423)
|++|+|.|.||||||||+|+|||..|+++|++|++||+|+|++...++ +.... . ..++. ....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~-~~~~~--------~----~~~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWK-ENALR--------S----NTWDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHH-Hhhcc--------c----cCCCccceec---
Confidence 589999999999999999999999999999999999999998755443 11100 0 00000 0000
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~ 227 (423)
.. .....++..++...++.||||||||||+.+.....+ +.++|.+++|+.|+..++..+.++++.+.+
T Consensus 65 ---------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~ 132 (231)
T PRK13849 65 ---------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred ---------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHH
Confidence 00 011234455444434689999999999998665443 567899999999999999888877765542
Q ss_pred ------CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE-EeecCchhhhhcccCCCceEeeCCCC---HH
Q 014511 228 ------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCG---EV 297 (423)
Q Consensus 228 ------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~~i~~a~~~g~pi~~~~p~s---~~ 297 (423)
.+++ ..+++||+....... .....+++.+.+ +++ ..|+.+..+.++...|.+.....+.+ ..
T Consensus 133 ~~~~~~~~l~-~~iv~~~~~~~~~~~-----~~~~~~~~~~~~--~vl~t~I~~r~~~~~a~~~G~~~~~~~~~~~~~~~ 204 (231)
T PRK13849 133 LLLSENLAIP-TAILRQRVPVGRLTT-----SQRAMSDMLESL--PVVDSPMHERDAFAAMKERGMLHLTLLNLSTDPTM 204 (231)
T ss_pred HHHHhCCCCC-eEEEEEecccccCCH-----HHHHHHHHHhcC--CCCCccccchHHHHHHHhcCCcccchhhccccHHH
Confidence 2344 459999974322111 112234444433 444 44888889999999999776433322 22
Q ss_pred HHHHHHHHHHH
Q 014511 298 ANTFQDLGVCV 308 (423)
Q Consensus 298 ~~~~~~la~~i 308 (423)
....+++...+
T Consensus 205 ~~~~~~~~~~~ 215 (231)
T PRK13849 205 RLLERNLRIAM 215 (231)
T ss_pred HHHHHhHHHHH
Confidence 23555555544
No 43
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.93 E-value=3.5e-25 Score=199.00 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=126.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc---ccc----cCCCCCceeeeccCCc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGV 141 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~---~~~----~~~~~~~i~~~~~~~l 141 (423)
+|+|+|+|+|||+||||+|.|||.+||+.|+||++||+|++++++..+++.... +.. .....+.+.....+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 799999999999999999999999999999999999999999988777765431 111 1111233333444799
Q ss_pred eEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 142 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 142 ~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
+++|++...... ..+.. ..++.+++.+. .+||||||||||......... ....+|.+++|+.|+..+...+.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~----~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~-~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQS----SNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI-IARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-HHHhCCeEEEEEECCCCCHHHHHH
Confidence 999987643322 22232 23555555553 789999999999432111111 122479999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccC
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
.++.+++.+.+++|+|+|++....
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccccc
Confidence 999999999999999999976443
No 44
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.93 E-value=3.7e-25 Score=198.99 Aligned_cols=164 Identities=24% Similarity=0.271 Sum_probs=122.4
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCcccCCCCCc--ccc----cC-CCCCceeeecc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE----MN-PEKRTIIPTEY 138 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~~~~~~~~~~~~~--~~~----~~-~~~~~i~~~~~ 138 (423)
+.+|+|+|+|+|||+||||+|+|||++||+ .|+|||+||+|+++++++.+++.+.. +.. .. ...+.+.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 457899999999999999999999999997 69999999999999888888876542 111 11 12233334445
Q ss_pred CCceEEcCCCCCCccc-ccCCchHHHHHHHHHHhcccCCC--cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 014511 139 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~y--D~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~ 215 (423)
++++++|.+....... .... ..++++++.+. .+| |||||||||+.+....... ...+|.+++|++++..+.
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~----~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLAS----QRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCCCCH
Confidence 7999999876544321 1222 34555555544 566 9999999999864222111 335799999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEe
Q 014511 216 IDVAKGVRMFSKLKVPCIAVVEN 238 (423)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~gvV~N 238 (423)
.++.+.++.++ +.+++|+|+|
T Consensus 187 ~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999998 6788999998
No 45
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.92 E-value=2e-24 Score=203.02 Aligned_cols=167 Identities=19% Similarity=0.280 Sum_probs=126.8
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c---cccCCCCCceee-eccC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIP-TEYL 139 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~---~~~~~~~~~i~~-~~~~ 139 (423)
.+..|+|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++.++.+++.+.. + .......+.+.. ...+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 456799999999999999999999999999999999999999999988887775432 1 111112223332 3357
Q ss_pred CceEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 140 GVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 140 ~l~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
|++++|++...... ..+..+ .++.+++.+ ++.||||||||||..... ...+ ...+|.+++|++++..+..+
T Consensus 180 ~l~~lp~g~~~~~~~~~~~~~----~~~~~l~~l-~~~yD~ViiD~pp~~~~~d~~~~--~~~~d~vilV~~~~~t~~~~ 252 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELLARP----AFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQIV--ATRARGTLIVSRVNETRLHE 252 (274)
T ss_pred CEEEEeCcCCCCCHHHHhCcH----HHHHHHHHH-HhcCCEEEEeCCCcccccHHHHH--HHhCCeEEEEEECCCCCHHH
Confidence 99999998654322 333333 345555554 378999999999976421 1222 23569999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEec
Q 014511 218 VAKGVRMFSKLKVPCIAVVENM 239 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~ 239 (423)
+.+.++.+++.+.+++|+|+|+
T Consensus 253 ~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999999996
No 46
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.90 E-value=5.7e-24 Score=189.68 Aligned_cols=190 Identities=24% Similarity=0.313 Sum_probs=122.5
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 151 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~ 151 (423)
|+|+|+|||+||||+|++||..|+++|+||++||+|++++.+..+++..+..... ....... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~ 69 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREG---LENANAI--------LKNFESQ 69 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTS---SHGHHCH--------HESCCHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhcccc---ceehhhh--------hhccchh
Confidence 7899999999999999999999999999999999999998887776551100000 0000000 0000000
Q ss_pred cccc-cCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-
Q 014511 152 GRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK- 229 (423)
Q Consensus 152 ~~~~-~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~- 229 (423)
.... -.+ .....++.+++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++.++.++++.+++.+
T Consensus 70 ~~~~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~ 146 (195)
T PF01656_consen 70 DIYQGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGK 146 (195)
T ss_dssp HHHHHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhhhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhcc
Confidence 0000 000 233456666655443459999999999998764443 56789999999999999999999999999877
Q ss_pred -CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCe--EEeecCchhhhh
Q 014511 230 -VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH--LFDLPIRPTLSA 280 (423)
Q Consensus 230 -~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ip~~~~i~~ 280 (423)
.+..++|+||+....... .....+.....+..+. -+.||++..+.|
T Consensus 147 ~~~~~~vv~N~v~~~~~~~-----~~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 147 KLKIIGVVINRVDPGNESK-----LQEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp TEEEEEEEEEEETSCCHHH-----HHHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred ccceEEEEEeeeCCCccch-----HHHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 458899999974432110 0012233334444332 277999887754
No 47
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.90 E-value=7.7e-23 Score=183.05 Aligned_cols=232 Identities=19% Similarity=0.243 Sum_probs=155.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--ccccc--------CCCCCceeeeccC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTEYL 139 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~~--------~~~~~~i~~~~~~ 139 (423)
|.|+|+ +|||.||||+|.||+.+||++|+||+.|.|||...|+..+++... ++.+. ....+.+....+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 579999 999999999999999999999999999999999988877766543 22111 1112344555667
Q ss_pred CceEEcCCCCCCcccccCCchHHHHHHHHHHh-cccCCCcEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 014511 140 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT-TEWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFI 216 (423)
Q Consensus 140 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~yD~iiiD~pp~~--~~~~~~~~~~~~~d~~iiv~~p~~~s~~ 216 (423)
|+..+.+|.+....-+. +.-+...++.+-+. ....+||||+.|.-.-. +-..+-+. .--++.+++|+.-+.+|+.
T Consensus 80 gi~CvEsGGPePGvGCa-GRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir-~g~a~evyIVtSge~msly 157 (273)
T PF00142_consen 80 GILCVESGGPEPGVGCA-GRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR-EGYAQEVYIVTSGEFMSLY 157 (273)
T ss_dssp GEEEEE---SCTTSSBH-HHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH-TTS-SEEEEEEBSSHHHHH
T ss_pred CceeeccCCCccccccc-ccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh-hccCCEEEEEecCcHHHHH
Confidence 88888876553322211 11112222222211 11246999999975432 11111111 2246999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC
Q 014511 217 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 292 (423)
Q Consensus 217 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~ 292 (423)
.+.++.+.+++. +.++.|+|.|.-... ...+..+++++..|.++++.||.+..++++...+++++++.
T Consensus 158 AANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--------~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~ 229 (273)
T PF00142_consen 158 AANNICKAIKNFADRGGARLGGIICNSRNVD--------DEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAA 229 (273)
T ss_dssp HHHHHHHHHHHHCTTSS-EEEEEEEE-SSST--------THHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCCCC--------CchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeC
Confidence 888877766644 357889999953211 12357889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 014511 293 PCGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 293 p~s~~~~~~~~la~~i~~~~ 312 (423)
|+|+.+..|++||+.|.+.-
T Consensus 230 P~s~~a~~yr~LA~~I~~~~ 249 (273)
T PF00142_consen 230 PDSEQAQEYRELARKILENP 249 (273)
T ss_dssp TTSHHHHHHHHHHHHHHH--
T ss_pred CCcHHHHHHHHHHHHHHhCC
Confidence 99999999999999998765
No 48
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-22 Score=173.88 Aligned_cols=233 Identities=22% Similarity=0.235 Sum_probs=170.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC--cccc--------cCCCCCceeeecc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 138 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~--~~~~--------~~~~~~~i~~~~~ 138 (423)
|+.|+|+ +|||.||||++.|+|.+||..|+||++|-|||...|+..++|... ++.+ .....+.+..+.+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 5789999 999999999999999999999999999999999988888888432 1111 1233456777788
Q ss_pred CCceEEcCCCCCCcccccCCchHHHHHHHHHHhcc-cCCCcEEEEcCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchH
Q 014511 139 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 139 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~iiiD~pp~~--~~~~~~~~~~~~~d~~iiv~~p~~~s~ 215 (423)
.|++.+.+|-+....-+.. --+...++.|-+.-. .++.|+||+|..+-. +-..+-+ ..--+|.+.+|+.-+.+++
T Consensus 80 ~Gv~CVEsGGPepGvGCAG-RGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPi-Reg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGCAG-RGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPI-REGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCccc-chHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeeh-hcccCcEEEEEecCchHHH
Confidence 8999998776544333221 112222222211101 134699999996532 1111111 1224799999999999999
Q ss_pred HHHHHHHHHHHc----CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEee
Q 014511 216 IDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 291 (423)
Q Consensus 216 ~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~ 291 (423)
..+.+..+-+++ .+++.-|+|.|.-..+. ..+.++.+++.+|.++++.+|.+..+++|...|++++++
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~--------e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR--------ERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCccc--------HHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 888776554443 45778899999743222 235788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 014511 292 DPCGEVANTFQDLGVCVVQQC 312 (423)
Q Consensus 292 ~p~s~~~~~~~~la~~i~~~~ 312 (423)
+|+|..+..|++||+.|.+.-
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~ 250 (278)
T COG1348 230 APDSNQAEEYRELAKKILENE 250 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCC
Confidence 999999999999999888754
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.89 E-value=1.4e-22 Score=215.89 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=130.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcc------cccCCCCCceeeeccCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMNPEKRTIIPTEYLG 140 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~ 140 (423)
...|+|+|+|.|||+||||+|+|||..||+.|+||+|||+|+++++++.+||..... .......+.+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 456899999999999999999999999999999999999999999888888765321 11112223344555689
Q ss_pred ceEEcCCCCCCc-ccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 141 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 141 l~~l~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
++++|++..... ...+..+ .+..+++.+. +.||||||||||..+....... ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~----~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASP----AMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccH----HHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 999999854322 2333333 3444455443 7899999999998864332221 2247999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDA 244 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~ 244 (423)
+.++.++..+.+++|+|+|++....
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhh
Confidence 9999999999999999999975443
No 50
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.87 E-value=1.9e-21 Score=155.28 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=90.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
+|+|.|+|||+||||++.|||.++++. |++|+++|+|+|.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999753
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 014511 150 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 229 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~ 229 (423)
|||||||||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998765443 56789999999999999999999999998876
Q ss_pred CC---EEEEEEec
Q 014511 230 VP---CIAVVENM 239 (423)
Q Consensus 230 ~~---~~gvV~N~ 239 (423)
.+ .+.+|+|+
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 43 78888886
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.86 E-value=4e-21 Score=202.59 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=129.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c----cccCCCCCceeeeccCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEMNPEKRTIIPTEYLG 140 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~~~~ 140 (423)
...|+|+|+|.+||+||||+|.|||.+||..|+||++||+|++++.++.+++.... + .......+.+.....+|
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 45699999999999999999999999999999999999999999988887775432 1 11112234455555679
Q ss_pred ceEEcCCCCCCc-ccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 014511 141 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 141 l~~l~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
+++||+|..... ...+.. ..+..+++.+. ..||||||||||.....-.... ...+|.+++|+.++..+...+.
T Consensus 609 l~vl~~g~~~~~p~ell~~----~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~ 682 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVS 682 (726)
T ss_pred EEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHH
Confidence 999998864332 233333 34566666554 7899999999997753211111 2346999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccc
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..++.+.+.+.+++|+|+|++..
T Consensus 683 ~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 683 LSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred HHHHHHHhCCCceEEEEEeCccc
Confidence 99999999999999999999753
No 52
>PRK11519 tyrosine kinase; Provisional
Probab=99.86 E-value=4.3e-21 Score=202.16 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=130.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c----cccCCCCCceeeeccCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEMNPEKRTIIPTEYLG 140 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~~~~ 140 (423)
...|+|+|+|.+||+||||+|.|||..||+.|+||++||+|+++++++.++|.... + .......+.+.....+|
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 45689999999999999999999999999999999999999999998888876532 1 11112234555566689
Q ss_pred ceEEcCCCCCCcc-cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 014511 141 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQKLAFID 217 (423)
Q Consensus 141 l~~l~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~~~~~~~~d~~iiv~~p~~~s~~~ 217 (423)
+++||+|...... +.+. ...+..+++.+. .+||||||||||.+. |.. .+ ...+|.+++|+.++......
T Consensus 604 l~~lp~g~~~~~~~ell~----s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~-~l--~~~~d~~l~Vvr~~~t~~~~ 675 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLM----SERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-IV--GRHVGTTLMVARYAVNTLKE 675 (719)
T ss_pred EEEEeCCCCCCCHHHHhh----HHHHHHHHHHHH-hcCCEEEEeCCCcccchHHH-HH--HHHCCeEEEEEeCCCCCHHH
Confidence 9999988643322 2232 345666666654 789999999999764 332 22 23469999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEeccc
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
+...++.+++.+.+++|+|+|++.
T Consensus 676 ~~~~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 676 VETSLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCc
Confidence 999999999999999999999974
No 53
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.86 E-value=3.8e-21 Score=161.56 Aligned_cols=108 Identities=36% Similarity=0.528 Sum_probs=93.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
+|+|+|+|||+||||++.+||..++++|++|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999886532
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-C
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 229 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~-~ 229 (423)
|||||||+||+.+.....+ +..+|.+++|+.|+..++.++.+.++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999998766554 5567999999999999999999988887543 4
Q ss_pred CCEEEEEEecccc
Q 014511 230 VPCIAVVENMCHF 242 (423)
Q Consensus 230 ~~~~gvV~N~~~~ 242 (423)
...+++|+||+..
T Consensus 97 ~~~~~lVvN~~~~ 109 (139)
T cd02038 97 VLNFRVVVNRAES 109 (139)
T ss_pred CCCEEEEEeCCCC
Confidence 4568899999753
No 54
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.86 E-value=1.7e-20 Score=175.84 Aligned_cols=232 Identities=23% Similarity=0.288 Sum_probs=179.5
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCcccCCCCCccc--c----cCC----CCCcee
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLL--E----MNP----EKRTII 134 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~~~~~~~~~~~~~~~--~----~~~----~~~~i~ 134 (423)
.+..++++|.+.|||+|-||+|.|+|+.++. .++.|+|+|+|.++++...+++.+.... + ... ..+...
T Consensus 101 ~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~ 180 (366)
T COG4963 101 AQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLL 180 (366)
T ss_pred hhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHH
Confidence 3456999999999999999999999999996 4999999999999998777777654311 1 000 112223
Q ss_pred eeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 014511 135 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s 214 (423)
....+++++++..........+.. ..+..+++.+. ..||+||+|.|-...+++... +..+|.+++|++|+..+
T Consensus 181 ~~~~~~l~ll~a~~~~~~~~d~~~----~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~s 253 (366)
T COG4963 181 TRLASGLKLLAAPTELAKNYDLKT----GAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLAS 253 (366)
T ss_pred hccCCCceeecCCcchhhhccccc----chHHHHHHHhh-ccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHHH
Confidence 334578889887654433322222 23445555443 799999999997777776665 66789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCch-hhhhcccCCCceEee
Q 014511 215 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 291 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~-~i~~a~~~g~pi~~~ 291 (423)
++.++++++.+++.+ .+...+|+|++...... ..+++.+.++++.+..+|+|+ -+..|.++|+++.+.
T Consensus 254 lR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~ 324 (366)
T COG4963 254 LRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---------EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEV 324 (366)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---------CHHHHHHHhCCchhccccCCchhhhhhhccCcccccc
Confidence 999999999999875 34677888996543321 278999999999999999998 566899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 014511 292 DPCGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 292 ~p~s~~~~~~~~la~~i~~~~~ 313 (423)
+|.+++++++..++..+..+..
T Consensus 325 ~~~~~~~k~l~~la~~l~~~~~ 346 (366)
T COG4963 325 DPGSPAAKALAQLAQSLGGRIS 346 (366)
T ss_pred CCCChHHHHHHHHHHHhcCccC
Confidence 9999999999999998877543
No 55
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.85 E-value=1e-21 Score=181.83 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=122.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc----ccccCCCC--------CceeeeccC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLEMNPEK--------RTIIPTEYL 139 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~----~~~~~~~~--------~~i~~~~~~ 139 (423)
+.++++|||+||||+|+|+|..+|++|+||++||+|++ ++++..|+..-. ........ ..+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 56677999999999999999999999999999999998 588887776511 00000000 000000000
Q ss_pred CceEEcCCCCCCc-----ccccCCchHH--HHHHHHHHhcccCCCcEEEEcCCCCCChhh-hh----------hhhhcCC
Q 014511 140 GVKLVSFGFSGQG-----RAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LT----------LCQVVPL 201 (423)
Q Consensus 140 ~l~~l~~~~~~~~-----~~~~~~~~~~--~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~-~~----------~~~~~~~ 201 (423)
.++.+..+..... ...+..|... -.+..+.+.+.+.+||+|||||||...... +. ...-...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~ 160 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPER 160 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 1111211100000 0001112222 233444444444689999999999422110 11 1111123
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC-Ccee----eccCCChHHHHHHHhCCCeEEeecCc
Q 014511 202 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD-GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 202 d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
+.+++|++|+..++.++.++++.+++.++++.|+|+||+..... ...+ ...++..++++.+.|+...+..+|+.
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 57899999999999999999999999999999999999865432 1110 11233456777777765556667754
No 56
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=1.2e-20 Score=141.86 Aligned_cols=91 Identities=25% Similarity=0.354 Sum_probs=85.0
Q ss_pred ccceeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCC
Q 014511 319 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dg 398 (423)
.|..++.++..+.|.+.|.||.. +.++++.||..||||+|.....+|+.+.+.+ .++.+..|+++|+||++|.|+||
T Consensus 4 ~P~~lrvsk~r~~L~l~f~dg~~-~~L~ae~LRv~sPsAEvqghgp~q~v~v~gk--r~V~i~~i~p~GnYavri~FdDg 80 (120)
T COG3536 4 WPTELRVSKDRKVLSLTFADGAP-FRLPAEFLRVLSPSAEVQGHGPGQRVLVPGK--RNVQIRDIEPVGNYAVRILFDDG 80 (120)
T ss_pred CCceeEEeccCcEEEEEeCCCCc-ccCCHHHHHhcCchHHhcccCCCCceeeecc--ccceEEEeEecCceEEEEEecCC
Confidence 46678888999999999999999 9999999999999999999999999998876 68999999999999999999999
Q ss_pred C-cccCChHHHHhhh
Q 014511 399 F-SQIAPYDQLQTME 412 (423)
Q Consensus 399 h-~s~y~~~~L~~~~ 412 (423)
| +++|+|.||+.++
T Consensus 81 HDsGiy~W~YL~~lg 95 (120)
T COG3536 81 HDSGIYTWAYLHELG 95 (120)
T ss_pred cccCcccHHHHHHHh
Confidence 9 7899999999984
No 57
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.83 E-value=1e-19 Score=161.11 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=103.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
|++|+|+|.|||+||||.+..||..|+++|.+|.+||+||+.+...|.-..... . .-.+++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~---------~---~~~~~~~V~~~-- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRP---------G---AWPDRIEVYEA-- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcccc---------C---CCCCCeeEEec--
Confidence 689999999999999999999999999999999999999999876553111000 0 00112222210
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 228 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~ 228 (423)
.-...+++.++......|||||||+.++.+.....+ +..+|.+++|+.++......+.+.++++.+.
T Consensus 67 -----------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~ 133 (231)
T PF07015_consen 67 -----------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRRL 133 (231)
T ss_pred -----------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 011234555554443569999999998877554433 5578999999999999999988888877654
Q ss_pred ------CCCEEEEEEeccc
Q 014511 229 ------KVPCIAVVENMCH 241 (423)
Q Consensus 229 ------~~~~~gvV~N~~~ 241 (423)
.+| ..|+++|+.
T Consensus 134 ~~~~~~~ip-~~Vl~Tr~~ 151 (231)
T PF07015_consen 134 EKAERRDIP-AAVLFTRVP 151 (231)
T ss_pred HHhhCCCCC-eeEEEecCC
Confidence 344 478889875
No 58
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.82 E-value=2.6e-21 Score=171.56 Aligned_cols=208 Identities=25% Similarity=0.280 Sum_probs=106.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
++|+|.|+||||||||+|+|||.+|+++|+||.++|+|.++++++.+++......... ......+ ....++.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-gi~Lp~p----~~~~L~~--- 72 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-GIELPVP----SHFFLPP--- 72 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHH-T----------EEE-SSS---
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhc-CcccCCc----cceeecc---
Confidence 4899999999999999999999999999999999999999999998876432211100 0001111 1111211
Q ss_pred CCcccccCCch-HHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH-----------
Q 014511 150 GQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID----------- 217 (423)
Q Consensus 150 ~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~----------- 217 (423)
.....+.++. ....|.+++..+. .++|||||||| |.++.... .+...+|.++.|.+++...+.-
T Consensus 73 -~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr-~Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v 148 (261)
T PF09140_consen 73 -DQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSR-VAHSMADTLITPLNDSFVDFDLLGQVDPETFKV 148 (261)
T ss_dssp -HHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHH-HHHHT-SEEEEEEESSHHHHCCCEEE-TTTS-E
T ss_pred -cccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHH-HHHHhCCEEEccCchhHHhHHHHhccCccccee
Confidence 1222333333 2357888888775 68999999999 55544333 3344568777666654333220
Q ss_pred ------HHHHHHHHH---cCCCCEEE--EEEecccccC-CCceeeccCCChHHHHHHHhCCCeEEeecCchhhhhcccCC
Q 014511 218 ------VAKGVRMFS---KLKVPCIA--VVENMCHFDA-DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSG 285 (423)
Q Consensus 218 ------~~~~~~~l~---~~~~~~~g--vV~N~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g 285 (423)
+...++.-+ +.+...+- |+-|+..... +++ ..-.+.++++.+..|..+..-+-.+--+++-.-.|
T Consensus 149 ~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~a~Nk---~~~~~~l~~ls~rigfr~~~G~~eRvi~RelFp~G 225 (261)
T PF09140_consen 149 IGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLDARNK---RRVEEALEELSKRIGFRVAPGFSERVIYRELFPRG 225 (261)
T ss_dssp EEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--HHHH---HHHHHHHHHHHHHHT-EEEE--B--HHHCCCGGGT
T ss_pred cCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHHhHHH---HHHHHHHHHHHHhhCceeCCCcchhhhhHHhcccc
Confidence 011111111 11222222 3446643221 111 11124677888899977665555555666666667
Q ss_pred CceEeeC
Q 014511 286 MPEVAAD 292 (423)
Q Consensus 286 ~pi~~~~ 292 (423)
.++.+..
T Consensus 226 lTllDl~ 232 (261)
T PF09140_consen 226 LTLLDLK 232 (261)
T ss_dssp --GGGSC
T ss_pred chhhccc
Confidence 6665543
No 59
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.82 E-value=2.5e-20 Score=168.81 Aligned_cols=165 Identities=22% Similarity=0.237 Sum_probs=106.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC-------CCcccCCCCCcccc-----cCC-CCCcee-eec
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRLLE-----MNP-EKRTII-PTE 137 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~-------~~~~~~~~~~~~~~-----~~~-~~~~i~-~~~ 137 (423)
|.++++|||+||||++.+||..+|++|+||++||+|++.+ ++..+++....... ... ...... ...
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4578899999999999999999999999999999999984 33333332100000 000 000000 000
Q ss_pred cCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hhhhhc--CCCeEEEEeCCCcch
Q 014511 138 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVV--PLTAAVIVTTPQKLA 214 (423)
Q Consensus 138 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~~~~~--~~d~~iiv~~p~~~s 214 (423)
..+..+++.+. ...++.-.-.+.++++.+.+.+||||||||||+...... ....+. .+|.+++|+.|+..+
T Consensus 81 ~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH
Confidence 11222333221 122222222356666665534499999999997432211 111122 247899999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 215 FIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..++.++++.+++.+.+..|+|+|++..
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 9999999999999999999999999754
No 60
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.82 E-value=2.1e-19 Score=143.43 Aligned_cols=99 Identities=32% Similarity=0.504 Sum_probs=85.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
+|+|.|.|||+||||+|.|||..|+++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999998
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 227 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~---~l~~ 227 (423)
||+||||+||+.+...... +..+|.+++|+.|+..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988665433 56789999999999999999999887 3333
Q ss_pred --CCCCEEEEEEe
Q 014511 228 --LKVPCIAVVEN 238 (423)
Q Consensus 228 --~~~~~~gvV~N 238 (423)
.+....++|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 24557888876
No 61
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.79 E-value=6.4e-20 Score=178.80 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=75.1
Q ss_pred EEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCC-eeEEEEcCCCCcccCChHHHHh
Q 014511 332 IKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGN-YAVSITWPDGFSQIAPYDQLQT 410 (423)
Q Consensus 332 l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~-~~l~i~w~dgh~s~y~~~~L~~ 410 (423)
+.|.|+||.+ +.||++||||||+|+.|+|+.|+||++++.++|.+|+|.++.++++ +.+.|.|+|||.|+|+++||++
T Consensus 2 l~v~w~dg~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQDGKT-SRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHLSEFPAEWLKK 80 (366)
T ss_pred eEEEeCCCCE-eeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCceEcCHHHHhh
Confidence 6799999998 9999999999999999999999999999999999999999999874 4589999999999999999998
Q ss_pred hh
Q 014511 411 ME 412 (423)
Q Consensus 411 ~~ 412 (423)
.+
T Consensus 81 ~~ 82 (366)
T TIGR02409 81 RC 82 (366)
T ss_pred cc
Confidence 63
No 62
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.74 E-value=3.3e-18 Score=147.06 Aligned_cols=141 Identities=26% Similarity=0.380 Sum_probs=98.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--ccc----c---------CCCCCcee
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----M---------NPEKRTII 134 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~~----~---------~~~~~~i~ 134 (423)
|+|+|+|.+||+||||+|.|||..||+.|++|++||+|...+.+..+++.+.. +.. . ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999988888876643 111 1 11122333
Q ss_pred eeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 014511 135 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s 214 (423)
.....++++++..........+.... +..+++.+. ..||+||||+|+........ ..+..+|.+++|+.|+..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~li~~l~-~~yd~IivD~~~~~~~~~~~-~~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPED----VEELIDALK-EHYDYIIVDLPSSLSNPDTQ-AVLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHH----HHHHHHHHH-HHSSEEEEEEESTTTHTHHH-HHHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHH----HHHHHHHHH-HcCCEEEEECcCCccHHHHH-HHHHHCCEEEEEECCCccc
Confidence 33448899998665554444444444 444444443 58999999999988765332 1255679999999999887
Q ss_pred HH
Q 014511 215 FI 216 (423)
Q Consensus 215 ~~ 216 (423)
.+
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 63
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.74 E-value=7e-18 Score=159.55 Aligned_cols=196 Identities=22% Similarity=0.280 Sum_probs=118.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
|+|.| +|||||||||+|+.+|..+|++|+|||++..||.. ++...||.+-. .....-...+|++.+..+..
T Consensus 2 r~~~~-~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~-------~~~~~v~~~~~L~a~eid~~ 72 (305)
T PF02374_consen 2 RILFF-GGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG-------GEPTKVEGVPNLSAMEIDPE 72 (305)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B-------SS-EEETTCSSEEEEE--HH
T ss_pred eEEEE-ecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC-------CCCeEecCCCCceeeecCHH
Confidence 45544 59999999999999999999999999999999976 55555554211 00000011234444432210
Q ss_pred C---------------------------CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh--------
Q 014511 150 G---------------------------QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-------- 194 (423)
Q Consensus 150 ~---------------------------~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~-------- 194 (423)
. .....+.+-.-...+..+.+.+..++||+||+||||......+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~ 152 (305)
T PF02374_consen 73 AELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRW 152 (305)
T ss_dssp HHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHH
Confidence 0 00001112122223444444444589999999999964321100
Q ss_pred ------------------hh---------------------------hhc---CCCeEEEEeCCCcchHHHHHHHHHHHH
Q 014511 195 ------------------LC---------------------------QVV---PLTAAVIVTTPQKLAFIDVAKGVRMFS 226 (423)
Q Consensus 195 ------------------~~---------------------------~~~---~~d~~iiv~~p~~~s~~~~~~~~~~l~ 226 (423)
+. ... ....+++|++|+..++..+.++...++
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~ 232 (305)
T PF02374_consen 153 WLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELK 232 (305)
T ss_dssp HHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHH
Confidence 00 000 134689999999999999999999999
Q ss_pred cCCCCEEEEEEecccccCCCc-ee----eccCCChHHHHHHHhCCCeEEeecC
Q 014511 227 KLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFGIPHLFDLPI 274 (423)
Q Consensus 227 ~~~~~~~gvV~N~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~ip~ 274 (423)
..++++-++|+|++....... .+ ...+...++++.+.|....+..+|+
T Consensus 233 ~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~ 285 (305)
T PF02374_consen 233 LYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPL 285 (305)
T ss_dssp HTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE-
T ss_pred hcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 999999999999986554321 00 1123356777888886445666775
No 64
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.71 E-value=5.3e-18 Score=164.76 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=62.7
Q ss_pred eechhhhhcCCCCCCcccCCCCcccccCCCCC---CCCceeeEEEeCCeeEEEEcCCCCcccCChHHHHhh
Q 014511 344 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVP---EDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTM 411 (423)
Q Consensus 344 ~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~---~~~~~~~~~~~~~~~l~i~w~dgh~s~y~~~~L~~~ 411 (423)
.||++||||||+|+.|+|+.|+||++++.++| .++.+.++..++++ |+|+|+|||.|.|+++||++.
T Consensus 1 ~f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~~-l~i~W~dgh~s~y~~~wL~~~ 70 (362)
T TIGR02410 1 IFHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDEDT-LRVTWPDGHVSKFKEDWLIRH 70 (362)
T ss_pred CCCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCCe-EEEEecCCCceecCHHHHHhc
Confidence 37999999999999999999999999888887 99999999988874 999999999999999999876
No 65
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.67 E-value=2.7e-17 Score=150.43 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=76.9
Q ss_pred cCCcEEEEEeCCCCceEeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEe-CCeeEEEEcCCCCcccCCh
Q 014511 327 KSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPM-GNYAVSITWPDGFSQIAPY 405 (423)
Q Consensus 327 ~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~-~~~~l~i~w~dgh~s~y~~ 405 (423)
...+.+++.|.|+.. ..||.+||||||||+.|++++++.|++.+..++.++.|..+.++ +...|.|.|+|||.|.|++
T Consensus 23 n~~~iv~v~~~d~~~-~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~s~Fpl 101 (407)
T KOG3888|consen 23 NRSHIVQVPWFDRKS-LTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHHSQFPL 101 (407)
T ss_pred CCcceEeecccCCCc-ccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCcccCCH
Confidence 345668889999999 99999999999999999999999999999999999999999998 3347999999999999999
Q ss_pred HHHHhh
Q 014511 406 DQLQTM 411 (423)
Q Consensus 406 ~~L~~~ 411 (423)
+||+.-
T Consensus 102 ~wlker 107 (407)
T KOG3888|consen 102 QWLKER 107 (407)
T ss_pred HHHHhh
Confidence 999987
No 66
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.66 E-value=1.4e-15 Score=143.35 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=121.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC--CcccccCCCCCceeeeccCCceEEcCC-
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLEMNPEKRTIIPTEYLGVKLVSFG- 147 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~l~~l~~~- 147 (423)
.|.+++|||||||||+|+.+|..+|+.|+|||+|..||.+ ++...|+.+ ....... +|++.+...
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-----------~nL~a~eiD~ 70 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-----------PNLDALELDP 70 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC-chHhhhccccCCchhhcC-----------CCCceeeecH
Confidence 3455559999999999999999999999999999999976 455554431 1111000 222222111
Q ss_pred --------------------------CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh-------
Q 014511 148 --------------------------FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------- 194 (423)
Q Consensus 148 --------------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~------- 194 (423)
........+.|-.-...+..+.+....++||+||+||||......+.
T Consensus 71 ~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~ 150 (322)
T COG0003 71 EKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLG 150 (322)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHH
Confidence 01111222333333445566666666688999999999954311100
Q ss_pred --h---h-----h---------------h-----------------------c--CCCeEEEEeCCCcchHHHHHHHHHH
Q 014511 195 --L---C-----Q---------------V-----------------------V--PLTAAVIVTTPQKLAFIDVAKGVRM 224 (423)
Q Consensus 195 --~---~-----~---------------~-----------------------~--~~d~~iiv~~p~~~s~~~~~~~~~~ 224 (423)
+ . . . . .-....+|.+|+..++....+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~ 230 (322)
T COG0003 151 WYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVER 230 (322)
T ss_pred HHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHH
Confidence 0 0 0 0 0 0245578999999999999999999
Q ss_pred HHcCCCCEEEEEEecccccCCCce----eeccCCChHHHHHHHhCCCeEEeecCc
Q 014511 225 FSKLKVPCIAVVENMCHFDADGKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 225 l~~~~~~~~gvV~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
+...++++.++++|++.+...... ....++....++.+.|..-.+..+|.-
T Consensus 231 l~~~~i~v~~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~ 285 (322)
T COG0003 231 LSLYGIPVDAVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLL 285 (322)
T ss_pred HHHcCCchheeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEeccc
Confidence 999999999999999876553310 011122345667777765556666653
No 67
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.62 E-value=1.5e-15 Score=111.67 Aligned_cols=78 Identities=56% Similarity=0.976 Sum_probs=61.4
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC--CCceeeccCCC
Q 014511 178 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRG 255 (423)
Q Consensus 178 D~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~~~~ 255 (423)
||+|||+|||++|..+++.+....+.+++|++|+..|..+++|.++++++.+++++|+|.||..+.+ +++.++.|+++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~G 81 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGKG 81 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999887 46777777653
No 68
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.57 E-value=5.3e-14 Score=130.99 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
+.+++|+|+ |++|+||||++++||..+++.|++|++||+|++..... .+........++.+++.
T Consensus 70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~---------------~ql~~~~~~~~i~~~~~ 133 (272)
T TIGR00064 70 NKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI---------------EQLEEWAKRLGVDVIKQ 133 (272)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHH---------------HHHHHHHHhCCeEEEeC
Confidence 345899999 89999999999999999999999999999999754310 00000111123444433
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhh------hhhc------CCCeEEEEeCCCcch
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLA 214 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~------~~~~------~~d~~iiv~~p~~~s 214 (423)
+...+.. ......+..+ ...+||+|||||||........+ .... ..|.+++|+... ..
T Consensus 134 ~~~~dp~-----~~~~~~l~~~----~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~ 203 (272)
T TIGR00064 134 KEGADPA-----AVAFDAIQKA----KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TG 203 (272)
T ss_pred CCCCCHH-----HHHHHHHHHH----HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CC
Confidence 3211100 0111222222 23789999999999764211100 0111 268888988886 45
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 215 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
..++..+..+.+..+ ..|+|+|+++..... +..-.+...++.|+.+.
T Consensus 204 ~~~~~~~~~f~~~~~--~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~~ 250 (272)
T TIGR00064 204 QNALEQAKVFNEAVG--LTGIILTKLDGTAKG--------GIILSIAYELKLPIKFI 250 (272)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 555655555554454 579999997543322 45667777788876543
No 69
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.55 E-value=2.9e-15 Score=132.20 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=66.9
Q ss_pred EeechhhhhcCCCCCCcccCCCCcccccCCCCCCCCceeeEEEeCCeeEEEEcCCCCcccCChHHHHhhhhc
Q 014511 343 FFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTMERL 414 (423)
Q Consensus 343 ~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~l~i~w~dgh~s~y~~~~L~~~~~~ 414 (423)
..+++.||||||+|+.|+|-.|.||..|..++|.++.|+.+..++. .|+|.|+|||.|-|.++|+-.-+.-
T Consensus 18 ~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~skydl~~i~~~~~e 88 (371)
T KOG3889|consen 18 LIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQSKYDLGNIIREGKE 88 (371)
T ss_pred EEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccccccchhHHhhhhhh
Confidence 7889999999999999999999999999999999999999999987 5999999999999999999887544
No 70
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.54 E-value=2e-13 Score=115.52 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=83.4
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-cccCCCCCcccccCCCCCceeeeccCCceE--EcCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKL--VSFGF 148 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~--l~~~~ 148 (423)
|.+. ||||+||||++.+++..+.++|.||+++|+|++.+.. ..+++....+ .+ .. ..+++.+ ++.+.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~------~~-~~--~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRM------ER-HA--SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEh------hh-ee--cCCCceEEEcCCcC
Confidence 4455 9999999999999999999999999999999865432 1122211110 01 11 1134333 33321
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 228 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~ 228 (423)
..... . ....+.++ .+...+|||||||| +|.+.....+ ...+|.+++|++|+...-..+.+. .+++..
T Consensus 72 ~~~~~---~-~~~~~~~~----~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~ 139 (148)
T cd03114 72 FLGGL---S-RATPEVIR----VLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDDIQAIKA-GIMEIA 139 (148)
T ss_pred ccccc---c-hhHHHHHH----HHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhHHHHhhh-hHhhhc
Confidence 11110 0 11222232 22225899999999 6676544443 557899999999995444433333 344433
Q ss_pred CCCEEEEEEecc
Q 014511 229 KVPCIAVVENMC 240 (423)
Q Consensus 229 ~~~~~gvV~N~~ 240 (423)
+ -+++|++
T Consensus 140 ~----~~~~~k~ 147 (148)
T cd03114 140 D----IVVVNKA 147 (148)
T ss_pred C----EEEEeCC
Confidence 2 3667874
No 71
>PRK10867 signal recognition particle protein; Provisional
Probab=99.51 E-value=6.1e-13 Score=130.64 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=103.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
..+|.++ |.+|+||||++++||..|+++ |++|++||+|++.+....-+. ......|+.+.+.+
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~---------------~~a~~~gv~v~~~~ 163 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK---------------TLGEQIGVPVFPSG 163 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH---------------HHHhhcCCeEEecC
Confidence 4567776 899999999999999999998 999999999999875321110 01112345555433
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhh----hhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~----~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
... .........++......||+|||||++... +..+. +......+.+++|+.+.. -.++...
T Consensus 164 ~~~---------dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~av~~ 232 (433)
T PRK10867 164 DGQ---------DPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQDAVNT 232 (433)
T ss_pred CCC---------CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHHHHHH
Confidence 111 112223333333333689999999998663 21111 111223467788887642 2444444
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.+.+.+ .+++.|+|+|+.+...++ +..-.+...++.|+.+.
T Consensus 233 a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~fi 273 (433)
T PRK10867 233 AKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKFI 273 (433)
T ss_pred HHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 455543 356689999996544322 45778888889886653
No 72
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.46 E-value=2.3e-12 Score=112.59 Aligned_cols=162 Identities=21% Similarity=0.218 Sum_probs=97.7
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCCcc
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 153 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~~ 153 (423)
+..|++|+||||++.++|..+++.|++|+++|+|++.+.....+.. .....++.+++.....
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~--- 65 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV---------------LGEQVGVPVFEEGEGK--- 65 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH---------------hcccCCeEEEecCCCC---
Confidence 3449999999999999999999999999999999987654322110 0012345555432111
Q ss_pred cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh--hhh-h---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 014511 154 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL-T---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 227 (423)
Q Consensus 154 ~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~--~~~-~---~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~ 227 (423)
.....+.+.+....+.+||+||||+|+.... ..+ . +......+.+++|+.+. ..........++.+.
T Consensus 66 ------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~~~~ 138 (173)
T cd03115 66 ------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAFNEA 138 (173)
T ss_pred ------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHHHhh
Confidence 1222232333322347899999999987531 111 1 11112368888898884 333334444444445
Q ss_pred CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 228 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 228 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.+ ..++|+|+++...+. +..-.+....+.|+.+
T Consensus 139 ~~--~~~viltk~D~~~~~--------g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 139 LG--ITGVILTKLDGDARG--------GAALSIRAVTGKPIKF 171 (173)
T ss_pred CC--CCEEEEECCcCCCCc--------chhhhhHHHHCcCeEe
Confidence 55 589999996543322 2333488888888654
No 73
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.1e-13 Score=118.84 Aligned_cols=177 Identities=19% Similarity=0.162 Sum_probs=106.0
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc---CCCCCcccccCCCCCc--eeeeccCC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPEKRT--IIPTEYLG 140 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~---~~~~~~~~~~~~~~~~--i~~~~~~~ 140 (423)
.+....--|++|||||||||.+..||..||+-+.+||+|..||..+.++.+ |+............-. |.|. .+
T Consensus 15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~e 92 (323)
T KOG2825|consen 15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--VE 92 (323)
T ss_pred hcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCc--hh
Confidence 344556667779999999999999999999999999999999988655443 2222221111100000 0000 01
Q ss_pred ceEEcC--------------CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhh------------
Q 014511 141 VKLVSF--------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------------ 194 (423)
Q Consensus 141 l~~l~~--------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~------------ 194 (423)
+.-++- |...+-...+.+-+-.-.+...+..+..-+||.||+||+|......+.
T Consensus 93 ~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgK 172 (323)
T KOG2825|consen 93 MGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGK 172 (323)
T ss_pred hhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHH
Confidence 111110 000000011112122222333444444567999999999954321110
Q ss_pred -----------hh------h----------------------------hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 014511 195 -----------LC------Q----------------------------VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 229 (423)
Q Consensus 195 -----------~~------~----------------------------~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~ 229 (423)
+. . -..+...++|+.|+..|+..+.|+++.+.+.+
T Consensus 173 l~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~ 252 (323)
T KOG2825|consen 173 LLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQG 252 (323)
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcC
Confidence 00 0 00145678999999999999999999999999
Q ss_pred CCEEEEEEecccccC
Q 014511 230 VPCIAVVENMCHFDA 244 (423)
Q Consensus 230 ~~~~gvV~N~~~~~~ 244 (423)
++.-.+|+|+.-+..
T Consensus 253 idthnIIVNQLL~~~ 267 (323)
T KOG2825|consen 253 IDTHNIIVNQLLFPD 267 (323)
T ss_pred CcccceeeeeccCCC
Confidence 999999999975543
No 74
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.44 E-value=2.3e-12 Score=116.34 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
|++++.|.++||||||||+|++||.+|+++|++|++||+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 678999999999999999999999999999999999999999875543
No 75
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.44 E-value=3e-12 Score=125.79 Aligned_cols=167 Identities=20% Similarity=0.266 Sum_probs=99.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
..+.+.+|.+|+||||++++||..|. +.|++|++||+|++.+....-+. ......++.+.+.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~---------------~~a~~~gvp~~~~~~ 163 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLK---------------VLGQQVGVPVFALGK 163 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHH---------------HHHHhcCCceEecCC
Confidence 34555559999999999999999987 67999999999998875321100 000112333333221
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhh----hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~----~~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
.. .........++......||+|||||||... +..+. +......+.+++|+.+. .-.++....
T Consensus 164 ~~---------~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~--tgq~~~~~a 232 (428)
T TIGR00959 164 GQ---------SPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM--TGQDAVNTA 232 (428)
T ss_pred CC---------CHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc--chHHHHHHH
Confidence 11 111222333333223689999999998653 21111 11122357788888764 234455555
Q ss_pred HHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 223 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
..+.. .+++.|+|+|+.+...++ +....+...++.|+.+.
T Consensus 233 ~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~fi 272 (428)
T TIGR00959 233 KTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKFI 272 (428)
T ss_pred HHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 55542 245689999996543322 45788888899887653
No 76
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.43 E-value=5.4e-13 Score=107.78 Aligned_cols=109 Identities=30% Similarity=0.315 Sum_probs=68.4
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC---CCCC
Q 014511 75 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG---FSGQ 151 (423)
Q Consensus 75 ~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~---~~~~ 151 (423)
.++|||+||||++.+||..|+++|++|+++|+|+ +++...++.... ++..++-.+ +...
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~----------------~~~~~i~~g~~~~~~~ 65 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG----------------EIKLLLVMGMGRPGGE 65 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC----------------CceEEEEecccccCCC
Confidence 4489999999999999999999999999999999 333222221110 111101111 1122
Q ss_pred cccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEE
Q 014511 152 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 207 (423)
Q Consensus 152 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv 207 (423)
...+..+. .+++++..+....|||+|+||++|+......+ ...+|.+++|
T Consensus 66 g~~~~~n~----~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 66 GCYCPENA----LLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCEehhhH----HHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 22222211 55666665544889999999999998665544 2356777765
No 77
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.40 E-value=8.2e-12 Score=118.71 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=100.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
..++|++. |.+|+||||++.+||..++..|++|+++|+|++..... .+........++.+++..
T Consensus 113 ~~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~---------------eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 113 KPFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAI---------------EQLQVWGERVGVPVIAQK 176 (318)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhH---------------HHHHHHHHHcCceEEEeC
Confidence 45789998 69999999999999999999999999999999775310 001111122345555432
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh------hhhh------hcCCCeEEEEeCCCcchH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQ------VVPLTAAVIVTTPQKLAF 215 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~------~~~~------~~~~d~~iiv~~p~~~s~ 215 (423)
...+. ....++.+.... ...||+|||||||....... .+.. -...+..++|+.+. ...
T Consensus 177 ~~~dp--------a~~v~~~l~~~~-~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g~ 246 (318)
T PRK10416 177 EGADP--------ASVAFDAIQAAK-ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TGQ 246 (318)
T ss_pred CCCCH--------HHHHHHHHHHHH-hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CCh
Confidence 21111 011122222212 37899999999997641110 0100 01246677787776 344
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 216 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.++.++..+.+.. +..|+|+|+.+....+ +..-.+...++.|+.+.
T Consensus 247 ~~~~~a~~f~~~~--~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 247 NALSQAKAFHEAV--GLTGIILTKLDGTAKG--------GVVFAIADELGIPIKFI 292 (318)
T ss_pred HHHHHHHHHHhhC--CCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 4555544444343 4579999997533322 45666777788886654
No 78
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.40 E-value=3.8e-12 Score=99.58 Aligned_cols=93 Identities=41% Similarity=0.593 Sum_probs=73.1
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCCcc
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 153 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~~ 153 (423)
+.++++|+||||++.+||..|++.|++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~------------------------------------------------ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID------------------------------------------------ 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC------------------------------------------------
Confidence 34477799999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHH---HcCC
Q 014511 154 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF---SKLK 229 (423)
Q Consensus 154 ~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~-~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l---~~~~ 229 (423)
|++|+|++++.+.... .......+|.+++|+.|+..++..+.+..+.. ...+
T Consensus 35 ------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (99)
T cd01983 35 ------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEG 90 (99)
T ss_pred ------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccC
Confidence 8999999999876541 01224467999999999999999888875433 2334
Q ss_pred CCEEEEEEe
Q 014511 230 VPCIAVVEN 238 (423)
Q Consensus 230 ~~~~gvV~N 238 (423)
....++++|
T Consensus 91 ~~~~~vv~N 99 (99)
T cd01983 91 LRPVGVVVN 99 (99)
T ss_pred CceEEEEeC
Confidence 556777766
No 79
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.39 E-value=9.8e-12 Score=121.41 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=97.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
...+|+++ |.+|+||||++.+||..|+++|++|++|++|++.++....+.. .....++.+....
T Consensus 99 ~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~---------------~a~~~~vp~~~~~ 162 (429)
T TIGR01425 99 KQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQ---------------NATKARIPFYGSY 162 (429)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHH---------------HhhccCCeEEeec
Confidence 34688888 7999999999999999999999999999999998643221110 0011123322211
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hh-h---hhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-T---LCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~-~---~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
.. ........+.++......||+||||||+..... .+ . +......+.+++|+.+... .++...
T Consensus 163 ~~---------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~ 231 (429)
T TIGR01425 163 TE---------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQ 231 (429)
T ss_pred CC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHH
Confidence 11 011112222222222358999999999865321 11 1 1112234677888776432 223334
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.+.|.+. +++.|+|+|+.+...++ +..-.+...++.|+.+
T Consensus 232 a~~F~~~-~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 232 AKAFKDS-VDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIF 271 (429)
T ss_pred HHHHHhc-cCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEE
Confidence 4555432 45689999997655433 3455677777777553
No 80
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.36 E-value=5.5e-12 Score=114.82 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=108.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc-ccCCCCCceeeeccCCceEEcCCCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
|.|++.-.|+|||+++++|+..|.++|++|..+--=..+..- .....+.... ........ ......+. .......
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~-~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEE-TDRNGDALALQRLSGLPLD--YEDVNPYR-FEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCC-CCCcHHHHHHHHHcCCCCC--hhhcCcee-eCCCCCH
Confidence 678889999999999999999999999999885421111100 0000000000 00000000 00000011 1100000
Q ss_pred CcccccCC-chHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh---hhhhhc--CCCeEEEEeCCCcchHHHHHHHHHH
Q 014511 151 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRM 224 (423)
Q Consensus 151 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~---~~~~~~--~~d~~iiv~~p~~~s~~~~~~~~~~ 224 (423)
.-.....+ ......+.+.++.+. ++||+||||+++|...... ..+.+. --.-+++|+.++..++..+...++.
T Consensus 78 ~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 78 HLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence 00000000 111223444444443 7899999999988642211 000010 1134788999988888888888888
Q ss_pred HHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecC
Q 014511 225 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 274 (423)
Q Consensus 225 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 274 (423)
++..+.++.|+|+|++.... . ...+...+.+.+.++.++++.+|+
T Consensus 157 l~~~~~~i~gvIlN~~~~~~-~----~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPEP-G----LRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHCCCCeEEEEEccCCCcc-h----hHHHHHHHHHHHHcCCCeEEecCC
Confidence 88888999999999965431 1 122346788899999999999997
No 81
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.35 E-value=2.4e-11 Score=119.78 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=101.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.+.+|.++ |.+|+||||++.+||..|.++|++|++||+|.+.+.....+.. .....++.+....
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~---------------la~~~gvp~~~~~ 157 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ---------------LAEKIGVPFYGDP 157 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH---------------HHHHcCCcEEecC
Confidence 35677777 8999999999999999999999999999999987642111000 0000122222111
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hh----hhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL----TLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~----~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
........+...++.. ..+|+|||||+|..... .+ .+......|.+++|+.+... .++...
T Consensus 158 ---------~~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~ 224 (437)
T PRK00771 158 ---------DNKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQ 224 (437)
T ss_pred ---------CccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHH
Confidence 0112223344555443 45799999999866421 11 12224456888998887553 233333
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.+.+.+ .+++.|+|+|+.+...++ +.+-.+...++.|+.+.
T Consensus 225 a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~fi 265 (437)
T PRK00771 225 AKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKFI 265 (437)
T ss_pred HHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEEE
Confidence 344432 245689999996544432 46677888888876543
No 82
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.33 E-value=1.4e-11 Score=106.78 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=89.6
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--c-cccCCCCCceeeeccCCceEEcCCCCC
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L-LEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~-~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
|++..+|+||||+|.+||..|+++|+||++++-...+.. ..+.. . ........ .+.....+. ...+...
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~--~~~~~~~~~-~~~~~~p 73 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTAL--DWDEVNPYA-FALPLSP 73 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCC--chhccCCee-eCCCCCh
Confidence 577899999999999999999999999999754433211 00000 0 00000000 000000000 0000000
Q ss_pred CcccccCC-chHHHHHHHHHHhcccCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q 014511 151 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 223 (423)
Q Consensus 151 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~ 223 (423)
.......+ +.....+...++.+. ++||+||||+|++.... ...+++.. .+.+++|+.+...++..+....+
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~~~~~~~ 151 (166)
T TIGR00347 74 HIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINHTLLTVE 151 (166)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHH
Confidence 00001101 111122444444443 78999999999875421 11122222 35689999999999999999999
Q ss_pred HHHcCCCCEEEEEEe
Q 014511 224 MFSKLKVPCIAVVEN 238 (423)
Q Consensus 224 ~l~~~~~~~~gvV~N 238 (423)
.+++.+.++.|+|+|
T Consensus 152 ~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 152 HARQTGLTLAGVILN 166 (166)
T ss_pred HHHHCCCCeEEEEeC
Confidence 999999999999988
No 83
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.31 E-value=4.5e-11 Score=114.23 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=122.7
Q ss_pred CchhHHHHHHHHHHHhcCCCeeeEEEEEEeecCchhhhccccccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCc
Q 014511 21 CPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 100 (423)
Q Consensus 21 cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~ 100 (423)
-...+++.+.+.+.|..+-|-.+.++.+. .+.+.+|.++ |--|+||||++.-||.+|.++|+|
T Consensus 68 l~p~q~~iKiV~eELv~llG~~~~~~~l~----------------~~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~k 130 (451)
T COG0541 68 LTPGQQFIKIVYEELVKLLGGENSELNLA----------------KKPPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKK 130 (451)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCcccccC----------------CCCCeEEEEE-eccCCChHhHHHHHHHHHHHcCCc
Confidence 34567777788888766655433333322 1233477777 888999999999999999999999
Q ss_pred EEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEE
Q 014511 101 VGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYL 180 (423)
Q Consensus 101 VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~i 180 (423)
|++|-||.+.|..-. +.-.-...-++.+.+.+... ......++.++......||+|
T Consensus 131 vllVaaD~~RpAA~e---------------QL~~La~q~~v~~f~~~~~~---------~Pv~Iak~al~~ak~~~~Dvv 186 (451)
T COG0541 131 VLLVAADTYRPAAIE---------------QLKQLAEQVGVPFFGSGTEK---------DPVEIAKAALEKAKEEGYDVV 186 (451)
T ss_pred eEEEecccCChHHHH---------------HHHHHHHHcCCceecCCCCC---------CHHHHHHHHHHHHHHcCCCEE
Confidence 999999999986311 11111122345555432111 112233444444444789999
Q ss_pred EEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 181 VIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 181 iiD~pp~~~~~~------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
||||.+.+.... ..+.....-|.+++|+... .-.++....+.|.+ .+++.|||+++.+.+.++
T Consensus 187 IvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam--~GQdA~~~A~aF~e-~l~itGvIlTKlDGdaRG-------- 255 (451)
T COG0541 187 IVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM--IGQDAVNTAKAFNE-ALGITGVILTKLDGDARG-------- 255 (451)
T ss_pred EEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc--cchHHHHHHHHHhh-hcCCceEEEEcccCCCcc--------
Confidence 999998764211 1122223347788887653 23445555555544 256789999997766654
Q ss_pred ChHHHHHHHhCCCeEE
Q 014511 255 GSGSQVVQQFGIPHLF 270 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~ 270 (423)
+..-.+...+|.|+-+
T Consensus 256 GaALS~~~~tg~PIkF 271 (451)
T COG0541 256 GAALSARAITGKPIKF 271 (451)
T ss_pred hHHHhhHHHHCCCeEE
Confidence 3566777788877543
No 84
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.29 E-value=7.8e-11 Score=112.57 Aligned_cols=163 Identities=14% Similarity=0.176 Sum_probs=99.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-cccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
.++|+++ |.+|+||||++..||..|..+|++|+++|+|++.... ..+ .......|+.+....
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQL----------------k~yae~lgipv~v~~ 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL----------------QDYVKTIGFEVIAVR 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHH----------------HHHhhhcCCcEEecC
Confidence 4788888 6699999999999999999999999999999987321 111 001111234443211
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
....+...+..+.+ ..+||+|||||++...... ..+.....-+.+++|+.+. ....++...
T Consensus 304 ---------d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d~~~i 370 (436)
T PRK11889 304 ---------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKDMIEI 370 (436)
T ss_pred ---------CHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHHHHHH
Confidence 11122233333321 1369999999998643211 1111122236677776654 334556667
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
++.|.. +++-++|+++.+-.... +.+-.+...++.|+.+.
T Consensus 371 ~~~F~~--~~idglI~TKLDET~k~--------G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 371 ITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 410 (436)
T ss_pred HHHhcC--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 777776 45579999996543321 56677888888886643
No 85
>PRK13768 GTPase; Provisional
Probab=99.26 E-value=2.9e-11 Score=111.87 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
|+++|.|. |+||+||||++.+++.+|+++|++|++||+||+...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 56666666 7799999999999999999999999999999986543
No 86
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.19 E-value=5e-10 Score=112.30 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=113.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
+|+.|.|++.++|+||||+|++|+.+|+++|++|..+..++.......+ . .+......+++...
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~--------~------~~~g~~~~~ld~~~-- 65 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYH--------T------AATGRPSRNLDSWM-- 65 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHH--------H------HHhCCCcccCCcee--
Confidence 3678999999999999999999999999999999999986543110000 0 00000001111110
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHH--
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFI-- 216 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~---------~~~~~~~~~~~d~~iiv~~p~~~s~~-- 216 (423)
.. ...+.+.+..+. ..||++||....|+-+ ....++....+ -+++|+.+...+..
T Consensus 66 --------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~-pviLV~~~~~~~~~~a 131 (451)
T PRK01077 66 --------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGA-PVVLVVDASGMAQSAA 131 (451)
T ss_pred --------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCC-CEEEEECCchHHHHHH
Confidence 11 123344444333 6899999988755422 12233333333 46667776653332
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhh-hcccCCCceEeeCCCC
Q 014511 217 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDSGMPEVAADPCG 295 (423)
Q Consensus 217 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~-~a~~~g~pi~~~~p~s 295 (423)
.+...+..+ ..++++.|+|+|++.... + .....+..+..++|+++.||+++.+. .....|. +......
T Consensus 132 ~l~~~~~~~-~~~i~i~GvI~N~v~~~~----~----~~~l~~~l~~~gipvLG~IP~~~~l~~p~r~lgl--~~~~e~~ 200 (451)
T PRK01077 132 ALVLGFATF-DPDVRIAGVILNRVGSER----H----YQLLREALERCGIPVLGALPRDAALALPERHLGL--VQASEHG 200 (451)
T ss_pred HHHHHHHHh-CCCCCEEEEEEECCCChh----H----HHHHHHHHHhcCCCEEEEeeCCcccCCCccccCC--CCccccc
Confidence 222223333 226789999999974221 0 12234444558999999999998664 2222332 2111122
Q ss_pred HHHHHHHHHHHHHHHH
Q 014511 296 EVANTFQDLGVCVVQQ 311 (423)
Q Consensus 296 ~~~~~~~~la~~i~~~ 311 (423)
...+.+..+++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (451)
T PRK01077 201 DLEARLDALADLVEEH 216 (451)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 3455556666555444
No 87
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.19 E-value=6.2e-10 Score=106.19 Aligned_cols=164 Identities=17% Similarity=0.206 Sum_probs=95.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
.++|++++. .|+||||++.+||..+.++|++|++|++|+|+......+. ......++.+...
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk---------------~yae~lgvpv~~~-- 267 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ---------------GYADKLDVELIVA-- 267 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH---------------HHhhcCCCCEEec--
Confidence 578888865 5999999999999999999999999999999753211000 0001112222211
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhh----hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~----~~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
.....+...+..+.. .++||+|||||++... ...+. +......+.+++|..+. ....++...+
T Consensus 268 -------~dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~i~ 336 (407)
T PRK12726 268 -------TSPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMTIL 336 (407)
T ss_pred -------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHHHH
Confidence 011122223333311 1579999999998642 11111 11112235556666553 3344455555
Q ss_pred HHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 223 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
+.++. +++-|+|+++.+-.+.. +.+-.+...+|.|+.+.
T Consensus 337 ~~f~~--l~i~glI~TKLDET~~~--------G~~Lsv~~~tglPIsyl 375 (407)
T PRK12726 337 PKLAE--IPIDGFIITKMDETTRI--------GDLYTVMQETNLPVLYM 375 (407)
T ss_pred HhcCc--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 55554 45579999996543322 56777888888886643
No 88
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.18 E-value=9.6e-10 Score=91.53 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=95.0
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCCcc
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 153 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~~ 153 (423)
|..++| +||||++..|+..|.++|.+|..++...+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC--------------------------------------------
Confidence 444666 99999999999999999999999987764
Q ss_pred cccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 014511 154 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 227 (423)
Q Consensus 154 ~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~ 227 (423)
+|++||+.++|+.. .....+.... .-+++|++|+..++.++...++.++.
T Consensus 39 -----------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~ 94 (134)
T cd03109 39 -----------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARI 94 (134)
T ss_pred -----------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHh
Confidence 47777777766531 1122222222 24789999999999989999999999
Q ss_pred CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 228 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 228 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
.++.+.|++.|++..... .++ ...+.+.+.++.|+++.+|
T Consensus 95 ~g~~i~gvi~N~~~~~~~-----~~~-~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 95 KGIILNGVLGNVIVEKEG-----LAT-LNVETIERLTGIPVLGIVP 134 (134)
T ss_pred cCCceeEEEEccCCCccc-----hhh-hhHHHHHHhcCCCEEEeCC
Confidence 999999999998654321 111 3578899999999999887
No 89
>PRK14974 cell division protein FtsY; Provisional
Probab=99.15 E-value=1e-09 Score=104.69 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=96.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
+++|+|+ |..|+||||++.+||..|.+.|++|+++++|.+.......+ .......|+.+++...
T Consensus 140 ~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL---------------~~~a~~lgv~v~~~~~ 203 (336)
T PRK14974 140 PVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL---------------EEHAERLGVKVIKHKY 203 (336)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH---------------HHHHHHcCCceecccC
Confidence 4677777 79999999999999999999999999999998754321100 0011112333433221
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhhh-hh----hhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-TL----CQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~~-~~----~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
.. .....+.+.++.....+||+|||||++... +..+ .- .....-|.+++|..... . .++....
T Consensus 204 g~---------dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g-~d~~~~a 272 (336)
T PRK14974 204 GA---------DPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-G-NDAVEQA 272 (336)
T ss_pred CC---------CHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-c-hhHHHHH
Confidence 11 111222233332223679999999998663 2111 11 11123577788877643 2 2333333
Q ss_pred HHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 223 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
..+.+ .++.-|+|+|+.+-.... +..-.+....+.|+.+.
T Consensus 273 ~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~i 312 (336)
T PRK14974 273 REFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILFL 312 (336)
T ss_pred HHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 44432 134579999997654432 34555666678776653
No 90
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.10 E-value=9.3e-10 Score=106.65 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=91.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH-HHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~L-a~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
++|+|+ |.+|+||||++.+||..+ ...|++|+++|+|+|+......+ .......++.+.+.
T Consensus 224 ~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQL---------------k~yAe~lgvp~~~~-- 285 (432)
T PRK12724 224 KVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL---------------KRYADTMGMPFYPV-- 285 (432)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHH---------------HHHHHhcCCCeeeh--
Confidence 456665 999999999999999876 57799999999999886432211 00111112222211
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhh-hhhhc------CCCeEEEEeCCCcchHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT-LCQVV------PLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~-~~~~~------~~d~~iiv~~p~~~s~~~~~ 219 (423)
......... + ...+||+|||||++... ...+. +..+. .-...++|+.+.. ...++.
T Consensus 286 ----------~~~~~l~~~-l---~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~~ 350 (432)
T PRK12724 286 ----------KDIKKFKET-L---ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTL 350 (432)
T ss_pred ----------HHHHHHHHH-H---HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHHH
Confidence 011112222 2 23689999999965432 11111 11111 1124566666543 344556
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
...+.++.++ .-|+|+++.+-.... +.+-.+...++.|+.+.
T Consensus 351 ~~~~~f~~~~--~~glIlTKLDEt~~~--------G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 351 TVLKAYESLN--YRRILLTKLDEADFL--------GSFLELADTYSKSFTYL 392 (432)
T ss_pred HHHHHhcCCC--CCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 6666676554 469999996543322 45667777888886543
No 91
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.09 E-value=8e-10 Score=104.06 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=53.5
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcee----eccCCChHHHHHHHhCCCeEEeecCc
Q 014511 202 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 275 (423)
Q Consensus 202 d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ip~~ 275 (423)
..+++|++|+..++.++.++++.++..+.+..++|+|++......... ...++..++++.+.++...+..+|+.
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 457999999999999999999999999999999999997654211110 11234556777777754445666653
No 92
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.07 E-value=7.7e-10 Score=109.44 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=91.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++|+|+ |.+||||||++++||..++ +.|++|++||+|+|+..... .+. ......++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~e------qL~---------~~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVE------QLK---------TYAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHH------HHH---------HHHHHhCCceEcc
Confidence 4688888 7799999999999999998 45899999999998642110 000 0001112222111
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--hh-hhhhhcC-C---CeEEEEeCCCcchHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-TLCQVVP-L---TAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~~-~~~~~~~-~---d~~iiv~~p~~~s~~~~~ 219 (423)
.....+...+ ..+ .+||+||||||+..... .. .+..+.. + ..+++|+.+. ....++.
T Consensus 285 ---------~~~~~l~~~l----~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 ---------YDPKELAKAL----EQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred ---------CCHHhHHHHH----HHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 0111222223 322 57999999998654321 00 1111211 1 2334444432 4455666
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.+++.++..++ -++|+++.+-... + +.+-.+....+.|+.+.
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~~------~--G~i~~~~~~~~lPv~yi 390 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETSS------L--GSILSLLIESGLPISYL 390 (424)
T ss_pred HHHHHhCCCCC--CEEEEeccccccc------c--cHHHHHHHHHCCCEEEE
Confidence 77777776654 5899998643221 1 35667777778776543
No 93
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.05 E-value=3.3e-09 Score=94.03 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=96.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
+++|+++ |-.||||||+++.||..+..+|++|.+|-+|.+..... .+.-.....-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~---------------eQL~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAV---------------EQLKTYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHH---------------HHHHHHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHH---------------HHHHHHHHHhccccchhhc
Confidence 3688888 77899999999999999998899999999999874311 0111111122444443221
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhh-----hhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~-----~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
.. .....+.+.++....++||+|+||||+... +.. ..+.....-+.+++|..+... ..++....
T Consensus 65 ~~---------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~ 134 (196)
T PF00448_consen 65 ES---------DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQAL 134 (196)
T ss_dssp TS---------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHH
T ss_pred ch---------hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHH
Confidence 11 122334444443334789999999986432 111 112223345677777766543 44555555
Q ss_pred HHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 223 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
...+..++ -++|+++.+...+. +..-.+....+.|+.+
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPISY 172 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEEE
T ss_pred HHhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeEE
Confidence 66666555 48999985433221 4566777778877543
No 94
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.04 E-value=8.3e-09 Score=94.35 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=109.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccC-CCCC-cccccCCCCCceeeeccCCceEEc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV-SPEN-RLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
|++.|.|++.-.|+|||+++..|+..|.++|++|..+--= .+.....- +..+ ........... +.....+. |
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi--~~g~~~~~~~~~~~D~~~l~~~~~~--~~~~~~~~--p 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPV--AKGSKETPEGLRNKDALVLQSVSSI--ELPYEAVN--P 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECcc--ccCCccCCCCCchHHHHHHHHhcCC--CCCHHhcc--C
Confidence 5678999999999999999999999999999999997432 22111000 0000 00000000000 00000000 0
Q ss_pred CCCCCCccc-ccCCch-HHHHHHHHHHhcccCCCcEEEEcCCCCCChhh-----hhhhhhcCCCeEEEEeCCCcchHHHH
Q 014511 146 FGFSGQGRA-IMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 146 ~~~~~~~~~-~~~~~~-~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~-----~~~~~~~~~d~~iiv~~p~~~s~~~~ 218 (423)
..+...... ...... ... +.+.++.+. .+||+|||++.+|+.... ..-.....-.-+++|+.....++..+
T Consensus 75 ~~~~~~~a~~~~~~~i~~~~-i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~ 152 (231)
T PRK12374 75 IALSEEESSVAHSCPINYTL-MSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHA 152 (231)
T ss_pred eecCCCcChHHcCCcCCHHH-HHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHH
Confidence 011100000 001111 122 222223333 789999999998653211 11011112345677777777778888
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 219 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 219 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
.-..+.++..++++.|+|+|++..... ...+..+.+.+..+.++++.+|+.+
T Consensus 153 lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~ 204 (231)
T PRK12374 153 LLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLP 204 (231)
T ss_pred HHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCC
Confidence 888888888899999999999753221 1123457777888999999999864
No 95
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.04 E-value=5.4e-09 Score=103.89 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=89.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC--CCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++|+|+ |.+|+||||++.+||..++.+ |++|.+|++|.+.......+. .. ....++.+...
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk------~y---------a~iLgv~v~~a 413 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH------SY---------GRQLGIAVHEA 413 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH------Hh---------hcccCceeEec
Confidence 5788888 779999999999999998875 589999999998743211100 00 00012211110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhhh----h-hhh-hcCCCeEEEEeCCCcchHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL----T-LCQ-VVPLTAAVIVTTPQKLAFIDVA 219 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~~----~-~~~-~~~~d~~iiv~~p~~~s~~~~~ 219 (423)
.... .+..++..+ .+||+|||||++... +..+ . +.. ....+.++++.++ +..+..
T Consensus 414 ---------~d~~----~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts---s~~Dl~ 475 (559)
T PRK12727 414 ---------DSAE----SLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA---HFSDLD 475 (559)
T ss_pred ---------CcHH----HHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC---ChhHHH
Confidence 0111 233333333 579999999997542 1110 0 000 1112333444443 444555
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 220 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 220 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
..++.+... ...|+|+|+++.... + +..-.+....+.|+.+
T Consensus 476 eii~~f~~~--~~~gvILTKlDEt~~------l--G~aLsv~~~~~LPI~y 516 (559)
T PRK12727 476 EVVRRFAHA--KPQGVVLTKLDETGR------F--GSALSVVVDHQMPITW 516 (559)
T ss_pred HHHHHHHhh--CCeEEEEecCcCccc------h--hHHHHHHHHhCCCEEE
Confidence 666666654 457999999644321 1 3455666677776554
No 96
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.02 E-value=1.8e-09 Score=96.54 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=108.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccc-ccCCCCCceeeeccCCceEEcCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
|.|.|++.-.|+|||+++..|+.+|.++|.||..+--=.++.... .+.... ....... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d----~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDD----EDAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCS----SHHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCC----chHHHHHHHhCCCc---ccccccccccCccc
Confidence 478899999999999999999999999999999765432222100 000000 0000000 00000000111000
Q ss_pred CCCcccccCCchHHHHHHHH-HHhcccCCCcEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~iiiD~pp~~~~------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
...-.....+ ....+.++ ++.+. ..+|++||+...+... ....++....+ -+++|+.....++..+...
T Consensus 74 ~~~~~~~~~~--~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 SPHLAAELEG--VDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGRLGTINHTLLT 149 (199)
T ss_dssp -HHHHHHHHT------HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred CHHHHhhccC--CcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCCCCCHHHHHHH
Confidence 0000000000 00113333 24443 7999999999887642 12223333333 4778888888899999999
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhh
Q 014511 222 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 279 (423)
Q Consensus 222 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~ 279 (423)
++.++..+.++.|+|+|++... +..+.+.+..++|+++.||+++.+.
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999998999999999995321 3688999999999999999988764
No 97
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.02 E-value=4.1e-09 Score=98.01 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=73.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|+.... . .-|.+ ...................+-+.
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g~D-s~~~~~aGa~~v~~~s~~~~~~~---- 71 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDGTD-TGRHFDAGADVVYGLTDGEWVAS---- 71 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCCCC-cHHHHHCCCcEEEEecCCeEEEE----
Confidence 5799999775 9999999999999999999 8999999985421 0 00000 00000000011111111111100
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCC-eEEEEeCCCcchHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFID 217 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d-~~iiv~~p~~~s~~~ 217 (423)
..... +..+++.+. .++|+||||+++......+....+...| .+++|..|+...+.+
T Consensus 72 -------~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d~~~ 129 (274)
T PRK14493 72 -------GRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLDTED 129 (274)
T ss_pred -------ecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccCHHH
Confidence 01112 333444333 5799999999997654333344444556 677788887777433
No 98
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.02 E-value=9.4e-09 Score=97.70 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc-cCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
+.+++|.|+ |++|+||||++.+|+..+.++|++|.+|++|++.+.... +++....... ....+++.+.+
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 101 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRS 101 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeee
Confidence 346788888 999999999999999999999999999999997653221 1211111100 01123343333
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF 225 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l 225 (423)
.+.... +.+. ......+++.+....||+|||||++ .+...... ...+|.++++..|.. ..++......+
T Consensus 102 ~~~~~~----~~~~--~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~--~~el~~~~~~l 170 (300)
T TIGR00750 102 MPTRGH----LGGL--SQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGT--GDDLQGIKAGL 170 (300)
T ss_pred cCcccc----ccch--hHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCc--cHHHHHHHHHH
Confidence 322110 1111 1223333333334789999999985 55443333 334588888776553 23333333323
Q ss_pred HcCCCCEEEEEEecccc
Q 014511 226 SKLKVPCIAVVENMCHF 242 (423)
Q Consensus 226 ~~~~~~~~gvV~N~~~~ 242 (423)
. +.+ .-+|+|+++.
T Consensus 171 ~--~~~-~ivv~NK~Dl 184 (300)
T TIGR00750 171 M--EIA-DIYVVNKADG 184 (300)
T ss_pred h--hhc-cEEEEEcccc
Confidence 2 223 2578899764
No 99
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=99.01 E-value=1.1e-08 Score=101.43 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeE----------EeecCchhhhhcc
Q 014511 213 LAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL----------FDLPIRPTLSASG 282 (423)
Q Consensus 213 ~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ip~~~~i~~a~ 282 (423)
.++.++.+.++.+++++++. .|.+|+...+...+. +.+++++++.|++++ +.+|+.+.+.++.
T Consensus 356 sGl~NL~RHIenvr~FGvPv-VVAINKFd~DTe~Ei------~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~ 428 (557)
T PRK13505 356 KGFANLERHIENIRKFGVPV-VVAINKFVTDTDAEI------AALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELI 428 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCE-EEEEeCCCCCCHHHH------HHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHH
Confidence 35567888899999999994 566799665553221 357888899999999 8899999888887
Q ss_pred cCCCc--eEeeCCCCHHHHHHHHHHHHHHH
Q 014511 283 DSGMP--EVAADPCGEVANTFQDLGVCVVQ 310 (423)
Q Consensus 283 ~~g~p--i~~~~p~s~~~~~~~~la~~i~~ 310 (423)
..+.+ -+.|..+.+..+.++.+|++|-.
T Consensus 429 ~~~~s~f~~lY~~d~sl~eKIe~IAkkIYG 458 (557)
T PRK13505 429 EEGESNFKPLYDDEDSLEEKIEKIATKIYG 458 (557)
T ss_pred hcCCCCCceecCCCCcHHHHHHHHHHHccC
Confidence 76544 13455677888999999988643
No 100
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.98 E-value=1.5e-08 Score=106.57 Aligned_cols=178 Identities=17% Similarity=0.192 Sum_probs=102.6
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
|+|.|.|++...|+|||+++..|+..|.++|+||..+--..+++.. . .... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~---------~~~~-------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------M---------SEVE-------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------H---------HHHH-------HHHhcc
Confidence 5788999999999999999999999999999999998744333100 0 0000 000000
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHHH---
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDV--- 218 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~------~~~~~~~~~d~~iiv~~p~~~s~~~~--- 218 (423)
........+...++.+. .+||++|||++.+.+... ..++... .+-+++|+.+...++.++
T Consensus 58 ---------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ---------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ---------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHH
Confidence 00011122222333333 789999999987654321 1112111 356888998887775443
Q ss_pred -HHHHHHHH-cCCCCEEEEEEecccccCC--Cceeecc----C-----CChHHHHHHHhCCCeEEeecCchhhh
Q 014511 219 -AKGVRMFS-KLKVPCIAVVENMCHFDAD--GKRYYPF----G-----RGSGSQVVQQFGIPHLFDLPIRPTLS 279 (423)
Q Consensus 219 -~~~~~~l~-~~~~~~~gvV~N~~~~~~~--~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ip~~~~i~ 279 (423)
....+.+. ..+.++.|+|+|+++.... ......+ . ........+..++++++.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 33344444 4568899999999432221 1000000 0 00011223445888999999987554
No 101
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.96 E-value=1.4e-08 Score=102.29 Aligned_cols=195 Identities=18% Similarity=0.201 Sum_probs=103.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccC---CCCCc---ccc----cCCCCCceeeecc--C
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV---SPENR---LLE----MNPEKRTIIPTEY--L 139 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~---~~~~~---~~~----~~~~~~~i~~~~~--~ 139 (423)
|.|++.-.+||||++++.|+..|.++|++|..+.. ++-++.... +.+.. ... .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp--~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~ 78 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS--QNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPK 78 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC--cccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcC
Confidence 46888999999999999999999999999997654 321211111 11100 000 0000111111110 0
Q ss_pred ---CceEEcCCCCC--Cccc---ccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--------hhhhhhhcCCCe
Q 014511 140 ---GVKLVSFGFSG--QGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTA 203 (423)
Q Consensus 140 ---~l~~l~~~~~~--~~~~---~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--------~~~~~~~~~~d~ 203 (423)
...++-.+... .... ..........+.+.+..+. ..||+||||+++|+.+. ...++....++
T Consensus 79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap- 156 (475)
T TIGR00313 79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD- 156 (475)
T ss_pred CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-
Confidence 01112111110 0000 0000122233444444443 68999999999876541 12333344445
Q ss_pred EEEEeCCCcchH-HHHHHHHHHHHcC-CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCch
Q 014511 204 AVIVTTPQKLAF-IDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 204 ~iiv~~p~~~s~-~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
+++|+.....+. ..+..++..++.. +..+.|+|+|++..+. ...+...+.+.+..|+|+++.+|+.+
T Consensus 157 VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 157 AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 556666665533 3444455555543 2578999999975321 11224556677778999999999864
No 102
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.94 E-value=3.6e-08 Score=88.03 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=114.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
||+.+.|++.-.|||||.+|..|+++|..+|++|...--=..|..-.. .+.+..... .....-......+.+.+...
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~-~~~D~~~l~--~~~~~~~~~~~~~py~f~~P 77 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETA-ENSDALVLQ--RLSGLDLSYELINPYRFKEP 77 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCC-CCchHHHHH--HhcCCCcccccccceecCCC
Confidence 688999999999999999999999999999999987533211110000 000000000 00000000011122222211
Q ss_pred CCCCcccccCC-chHHHHHHHHHHhcccCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 148 FSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 148 ~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
..+.-+....+ ..-...+..-+..+. ..||+|||...+|+-.. ....+... ..-+|+|+....-++..+.-
T Consensus 78 ~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~-~lpvILV~~~~LGtINHtlL 155 (223)
T COG0132 78 LSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQL-QLPVILVVGIKLGTINHTLL 155 (223)
T ss_pred CCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHc-CCCEEEEecCCccHHHHHHH
Confidence 11110000000 011122333232333 69999999999986311 11111111 24578899999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhh
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 278 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i 278 (423)
.++.+++.++++.|+|.|.......... .....+.+..+.|+++.+|+-+..
T Consensus 156 t~eal~~~gl~l~G~I~n~~~~~~~~~~------~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 156 TVEALRARGLPLAGWVANGINPELDHYA------EINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHHCCCCEEEEEEccCCCchhHHH------HHHHHHHHhcCCCccccccCCccc
Confidence 9999999999999999998643332110 122357778899999999985543
No 103
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.93 E-value=2.2e-08 Score=97.44 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 144 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l 144 (423)
.++|+++ |+.||||||+++.||..+.. .|++|++|++|.+.......+. .....-|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~---------------~~a~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQ---------------TYGDIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHH---------------HHhhcCCcceE
Confidence 4567766 88899999999999999873 5899999999998754321110 00000122111
Q ss_pred cCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh------hhhhhcCCC-eEEEEeCCCcchHHH
Q 014511 145 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLT-AAVIVTTPQKLAFID 217 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~------~~~~~~~~d-~~iiv~~p~~~s~~~ 217 (423)
... . ...+...+... .+||+|||||++....... ........+ ..++|..++.. ..+
T Consensus 238 ~~~------------~-~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AIE------------S-FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred eeC------------c-HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 100 0 11233333332 6899999999976532111 111111112 56777766543 445
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 218 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 218 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
+...++.+..+ +.-++|+++.+-.... +.+-.+...++.|+.+
T Consensus 302 ~~~~~~~~~~~--~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~y 344 (388)
T PRK12723 302 VKEIFHQFSPF--SYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSY 344 (388)
T ss_pred HHHHHHHhcCC--CCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEE
Confidence 55555555544 4569999986543321 4566777778877654
No 104
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.1e-09 Score=99.92 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=104.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
+.+.||.|+ |-.|+||||+..-||+.|.++|++|++.=+|..... ...+.-.+.+.-|++++..
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa---------------AiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA---------------AIEQLEVWGERLGVPVISG 200 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH---------------HHHHHHHHHHHhCCeEEcc
Confidence 346799999 888999999999999999999999999999987642 1122233344467788864
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhc------------CCCeEEEEeCCCcch
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------------PLTAAVIVTTPQKLA 214 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~------------~~d~~iiv~~p~~~s 214 (423)
....+ .....-..++......||+|||||.+.+..-.-.+..+. +-+.++++.....-
T Consensus 201 ~~G~D---------pAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG- 270 (340)
T COG0552 201 KEGAD---------PAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG- 270 (340)
T ss_pred CCCCC---------cHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC-
Confidence 32222 222233333333348999999999987743211111110 11335555443221
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 215 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.++....+.|.+. +++-|+|+++++...++ +.+-.+...+++|+.+.
T Consensus 271 -qnal~QAk~F~ea-v~l~GiIlTKlDgtAKG--------G~il~I~~~l~~PI~fi 317 (340)
T COG0552 271 -QNALSQAKIFNEA-VGLDGIILTKLDGTAKG--------GIILSIAYELGIPIKFI 317 (340)
T ss_pred -hhHHHHHHHHHHh-cCCceEEEEecccCCCc--------ceeeeHHHHhCCCEEEE
Confidence 1222233344432 45689999998765554 34567888999886643
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=98.88 E-value=4e-08 Score=99.55 Aligned_cols=195 Identities=18% Similarity=0.201 Sum_probs=103.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCC------cccc----cCCCCCceeeec
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN------RLLE----MNPEKRTIIPTE 137 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~------~~~~----~~~~~~~i~~~~ 137 (423)
||+.|.|++...|||||++|+.|+..|.++|++|..+-. ++.+.....+.+. .... .......+.|
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P-- 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNP-- 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCC--
Confidence 578899999999999999999999999999999997643 3211111111100 0000 0000001111
Q ss_pred cCCceEEcCCCCCC----------c--cc--ccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh--------hhhhh
Q 014511 138 YLGVKLVSFGFSGQ----------G--RA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--------IQLTL 195 (423)
Q Consensus 138 ~~~l~~l~~~~~~~----------~--~~--~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~--------~~~~~ 195 (423)
+.+-|...... . .. ..........+.+.+..+. ..||++||+...|.-. ....+
T Consensus 77 ---~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dl 152 (488)
T PRK00784 77 ---VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGF 152 (488)
T ss_pred ---EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHH
Confidence 11111110000 0 00 0001122233344444433 6899999998743321 12222
Q ss_pred hhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 196 CQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 196 ~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
+....+ -+++|+..... ++..+....+.+.. .+.++.|+|+|++..+. ..-++..+.+.+..++|+++.||
T Consensus 153 ak~l~~-PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~iP 225 (488)
T PRK00784 153 AEAADA-PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVLP 225 (488)
T ss_pred HHHcCC-CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEcC
Confidence 222222 35566665444 35555545556553 35689999999975321 11123455677778999999999
Q ss_pred Cchh
Q 014511 274 IRPT 277 (423)
Q Consensus 274 ~~~~ 277 (423)
+++.
T Consensus 226 ~~~~ 229 (488)
T PRK00784 226 YLDD 229 (488)
T ss_pred CCcC
Confidence 8754
No 106
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.79 E-value=1.4e-07 Score=94.65 Aligned_cols=197 Identities=20% Similarity=0.172 Sum_probs=105.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 151 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~ 151 (423)
|.|++...||||||+++.|+.+|+++|++|..+-.-+.. .+..... .+......+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--------~D~~~~~------~~~g~~~~~ld~-------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--------IDPMFHT------QATGRPSRNLDS-------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--------CCHHHHH------HHhCCchhhCCc--------
Confidence 678899999999999999999999999999998752110 0100000 000000001110
Q ss_pred cccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH-
Q 014511 152 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG- 221 (423)
Q Consensus 152 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~---------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~- 221 (423)
+. .-...+.+.+.... ..+|++||....|+-+ ....++....+ -+++|+..... ...+..+
T Consensus 60 ----~~--~~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~-pVILV~~~~~~-~~t~~al~ 130 (449)
T TIGR00379 60 ----FF--MSEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDA-PIVLVMNCQRL-SRSAAAIV 130 (449)
T ss_pred ----cc--CCHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCC-CEEEEECCchH-HHHHHHHH
Confidence 00 01223444444433 6899999998855421 12233333322 34555554421 1222222
Q ss_pred --HHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhhh-cccCC-CceEeeCCCCHH
Q 014511 222 --VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA-SGDSG-MPEVAADPCGEV 297 (423)
Q Consensus 222 --~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~~-a~~~g-~pi~~~~p~s~~ 297 (423)
...+ ..++++.|+|+|++.... + .....+.+.+..++|+++.||+++.+.- ....| .|..+ ....
T Consensus 131 ~~~~~~-~~~i~i~GvIlN~v~~~~----~---~~~~~~~i~~~~gipvLG~IP~~~~l~~p~rhLgLv~~~e---~~~~ 199 (449)
T TIGR00379 131 LGYRSF-DPGVKLKGVILNRVGSER----H---LEKLKIAVEPLRGIPILGVIPRQQDLKVPDRHLGLVPAGE---REII 199 (449)
T ss_pred HHHHhh-CCCCCEEEEEEECCCCHH----H---HHHHHHHHHHhCCCCEEEEecCccccCCCCcccCCCChhh---hhhH
Confidence 2222 337889999999975321 1 0123445666679999999999986542 11122 23322 2334
Q ss_pred HHHHHHHHHHHHH
Q 014511 298 ANTFQDLGVCVVQ 310 (423)
Q Consensus 298 ~~~~~~la~~i~~ 310 (423)
.+.+..+++.+.+
T Consensus 200 ~~~~~~~~~~~~~ 212 (449)
T TIGR00379 200 QQIFDWLAEVVEK 212 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666654444
No 107
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.78 E-value=5.2e-08 Score=101.36 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=95.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++|+|+ |-.||||||+...||..+. ..| ++|.++++|.+......-+ .......++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL---------------~~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQL---------------RIYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHH---------------HHHHHhCCCCcccc
Confidence 5788888 8899999999999999885 556 6999999998764321100 00011112211110
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhh-hh----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-LT----LCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~-~~----~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
.... .+...++.. .+||+|||||++-.. +.. .. +.....-+..++|+.+.. ...++..
T Consensus 249 ---------~~~~----~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 ---------KDAA----DLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ---------CCHH----HHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 0111 233344433 578999999987332 111 11 111122356777776653 3455666
Q ss_pred HHHHHHcC-CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 221 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 221 ~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
+++.++.. +.++-|+|+++.+-.... +.+-.+...++.|+.+.
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~--------G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL--------GPALDTVIRHRLPVHYV 356 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc--------cHHHHHHHHHCCCeEEE
Confidence 66667654 345679999996543321 45666777777776543
No 108
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.78 E-value=2.2e-07 Score=86.19 Aligned_cols=164 Identities=14% Similarity=0.162 Sum_probs=97.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS-LPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
...+|++. |++|+||||+...||..+..+|++|+++++|.+... ...+- ......++.+...
T Consensus 74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~----------------~~~~~~~~~~~~~ 136 (270)
T PRK06731 74 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ----------------DYVKTIGFEVIAV 136 (270)
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----------------HHhhhcCceEEec
Confidence 34688888 779999999999999999988999999999987522 11110 0000112332221
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhh----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~----~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
.....+...++.+-. ..+||+||||||+... ...+ .......-+.+++|..+.. ...++..
T Consensus 137 ---------~~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~ 203 (270)
T PRK06731 137 ---------RDEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIE 203 (270)
T ss_pred ---------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHH
Confidence 111122223333321 1479999999998763 1111 1111223456677776643 2334555
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.++.+.. +++-|+|+++.+-.... +.+-.+....+.|+.+.
T Consensus 204 ~~~~f~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 204 IITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 244 (270)
T ss_pred HHHHhCC--CCCCEEEEEeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 6666665 45679999996433321 45667777888886643
No 109
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.78 E-value=1.8e-07 Score=89.21 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=88.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc-cCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
+.+.+|.|. |-+|+||||++..|+..|..+|++|.+|..||+.+.+.. ++|....... ....++..+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 456788888 779999999999999999999999999999997653221 2221111100 01223333333
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRM 224 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~-p~~~s~~~~~~~~~~ 224 (423)
.+.... +. .....+.+.+..+....||+|||||++-.... ..+ ...+|.+++|+. +....+...... .
T Consensus 124 ~~~~~~----l~--~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~i--~~~aD~vlvv~~p~~gd~iq~~k~g--i 192 (332)
T PRK09435 124 SPSSGT----LG--GVARKTRETMLLCEAAGYDVILVETVGVGQSE-TAV--AGMVDFFLLLQLPGAGDELQGIKKG--I 192 (332)
T ss_pred cCCccc----cc--chHHHHHHHHHHHhccCCCEEEEECCCCccch-hHH--HHhCCEEEEEecCCchHHHHHHHhh--h
Confidence 221110 11 12233444444444478999999998744322 222 335799898886 444444444331 2
Q ss_pred HHcCCCCEEEEEEeccccc
Q 014511 225 FSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 225 l~~~~~~~~gvV~N~~~~~ 243 (423)
++-.+ -+|+|+++..
T Consensus 193 ~E~aD----IiVVNKaDl~ 207 (332)
T PRK09435 193 MELAD----LIVINKADGD 207 (332)
T ss_pred hhhhh----eEEeehhccc
Confidence 22222 4788997643
No 110
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.69 E-value=2e-08 Score=94.46 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=37.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEEecCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 111 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~~VlliD~D~~~~ 111 (423)
..++|+|+ |.+||||||++.+||..++.+ | ++|.+|++|++..
T Consensus 193 ~~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 35688888 679999999999999999976 5 9999999999874
No 111
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.68 E-value=3.9e-07 Score=88.06 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=89.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH-CC-CcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G-~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
..+++++ |..||||||++..||..+.. .| ++|.+|.+|.+...... .+ ......-|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E------qL---------~~~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE------QL---------RIFGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH------HH---------HHHHHHcCCceEec
Confidence 4677777 89999999999999998864 47 69999999998642110 00 00001112222111
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC--hhhhh-hhhh---cCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT-LCQV---VPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~--~~~~~-~~~~---~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
.....+...+.++ .++|+|||||++-.. ..... +..+ ......++|+.+.. ....+..
T Consensus 201 ---------~~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 ---------KDGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred ---------CCcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 0111222233332 678999999986431 11111 1111 12234566766653 3344444
Q ss_pred HHHHHHcCC-------CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 221 GVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 221 ~~~~l~~~~-------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
.++.+.... .++.|+|+++.+-... -+.+-.+....+.|+.+.
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASN--------LGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCC--------ccHHHHHHHHHCcCeEEE
Confidence 455554432 2357999998643331 145666777777776543
No 112
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.64 E-value=1.1e-06 Score=84.65 Aligned_cols=170 Identities=22% Similarity=0.239 Sum_probs=95.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
.|.+++...|+||||+|+.|..+|.++|++|--+-.-|.- |-| +.+-...|...
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY----------------------IDP----~~H~~atG~~s 55 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY----------------------IDP----GYHTAATGRPS 55 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc----------------------cCc----hhhhHhhCCcc
Confidence 4778899999999999999999999999988544332211 000 11111112222
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 221 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~---------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~ 221 (423)
.+.+.|- +-...+++++..-. .+.|+.||..--|+-|- +..++.+.. .=+|+|++....|...+ .+
T Consensus 56 rNLD~~m--m~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~A-Ai 130 (451)
T COG1797 56 RNLDSWM--MGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVA-AI 130 (451)
T ss_pred CCCchhh--cCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHH-HH
Confidence 2222221 11234555544433 67888887554443221 122222222 23677777766654432 22
Q ss_pred HHHHHcC--CCCEEEEEEecccccCCCceeeccCCChHHHHHHH-hCCCeEEeecCchhhh
Q 014511 222 VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTLS 279 (423)
Q Consensus 222 ~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ip~~~~i~ 279 (423)
+.=++.+ ++++.|||+|++.... ++ +..++..+. .|+|+++.||.++.+.
T Consensus 131 v~G~~~fdp~v~iaGVIlNrVgser----H~----~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 131 VKGFKHFDPDVNIAGVILNRVGSER----HY----ELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHhcCCCCceEEEEEecCCCHH----HH----HHHHHHhhhcCCCcEEEEecCCcccC
Confidence 3333333 4678999999975433 11 234444444 7899999999988644
No 113
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.63 E-value=1.1e-06 Score=80.66 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=93.5
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc-cCCCCCcccccCCCCCceeeeccCCceEE
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLV 144 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~l~~l 144 (423)
.+.+.+|.|+ |-+|+||||+.-.|...|.++|+||.+|--||..+-+.. ++|-.-... .....+|+.+=
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~---------~~~~~~~vFiR 117 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ---------RLAVDPGVFIR 117 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH---------hhccCCCeEEe
Confidence 4567899999 899999999999999999999999999999997653321 233211110 01124577776
Q ss_pred cCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCC-CCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHH
Q 014511 145 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGV 222 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp-~~~~~~~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~ 222 (423)
|++..+.-. .++......+..+....||+|||.|-+ |.++... ...+|.+++++.|..-. ++..+..+
T Consensus 118 s~~srG~lG------GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I----~~~aDt~~~v~~pg~GD~~Q~iK~Gi 187 (323)
T COG1703 118 SSPSRGTLG------GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI----ANMADTFLVVMIPGAGDDLQGIKAGI 187 (323)
T ss_pred ecCCCccch------hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH----hhhcceEEEEecCCCCcHHHHHHhhh
Confidence 654332211 123334444444445799999999965 3444332 23459999999997643 33333332
Q ss_pred HHHHcCCCCEEEEEEeccc
Q 014511 223 RMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~ 241 (423)
-.+.. -+|+|+.+
T Consensus 188 mEiaD------i~vINKaD 200 (323)
T COG1703 188 MEIAD------IIVINKAD 200 (323)
T ss_pred hhhhh------eeeEeccC
Confidence 22211 36789965
No 114
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=7.8e-07 Score=83.72 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=87.1
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
+.+.||.|+ |-.|+||||+...||+++.++|+||+||-+|........-+ .......++.+.-+
T Consensus 99 ~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQL---------------kqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 99 GKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQL---------------KQNATKARVPFYGS 162 (483)
T ss_pred CCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHH---------------HHHhHhhCCeeEec
Confidence 455689998 77889999999999999999999999999999875421111 11111122222221
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
+... +......+-.+....++||+||+||++...-. .........=|.+++|.....- ..+..
T Consensus 163 yte~---------dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG--Qaae~ 231 (483)
T KOG0780|consen 163 YTEA---------DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG--QAAEA 231 (483)
T ss_pred cccc---------chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc--HhHHH
Confidence 1111 11122222233334589999999998764311 1112222234778888776432 11222
Q ss_pred HHHHHHcCCCCEEEEEEecccccCC
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDAD 245 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~ 245 (423)
....|+. .+.+-++|+++.+...+
T Consensus 232 Qa~aFk~-~vdvg~vIlTKlDGhak 255 (483)
T KOG0780|consen 232 QARAFKE-TVDVGAVILTKLDGHAK 255 (483)
T ss_pred HHHHHHH-hhccceEEEEecccCCC
Confidence 2333332 24567899998655443
No 115
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=1.1e-06 Score=87.53 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=87.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++|+++ |-.||||||++.+||..+. ++| ++|.+|++|++..... +.+ .......|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~------EQL---------r~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH------EQL---------RIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH------HHH---------HHHHHHhCCCeecc
Confidence 4789988 8889999999999999886 456 5999999999753210 000 00001111111100
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhh-hhhhhhcC----CCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-LTLCQVVP----LTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~-~~~~~~~~----~d~~iiv~~p~~~s~~~~~~ 220 (423)
. .... ....+. .+ .++|+++|||++... +.. .....+.. -...++|.... .....+..
T Consensus 320 ~---------~~~D---l~~aL~-~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt-~~~~~l~~ 383 (484)
T PRK06995 320 K---------DAAD---LRLALS-EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT-SHGDTLNE 383 (484)
T ss_pred C---------Cchh---HHHHHH-hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC-CcHHHHHH
Confidence 0 0001 111222 22 678999999965321 110 11111111 12245555443 23345556
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.++.++..+ +.|+|+|+.+..... +.+-.+...++.|+.+
T Consensus 384 i~~~f~~~~--~~g~IlTKlDet~~~--------G~~l~i~~~~~lPI~y 423 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDEAASL--------GGALDVVIRYKLPLHY 423 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCCcccc--------hHHHHHHHHHCCCeEE
Confidence 666666644 468999996543322 4566777778877654
No 116
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=98.50 E-value=4.1e-07 Score=71.57 Aligned_cols=52 Identities=25% Similarity=0.574 Sum_probs=47.2
Q ss_pred eEEEeC--CEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 2 QINEAL--GEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~--~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
+|++++ +.++|+|++|+|+||+.+.+..+++.++..+++++.++++++++|+
T Consensus 41 ~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l~~~p~ 94 (111)
T COG2151 41 EVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVELTLSPP 94 (111)
T ss_pred EEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEEEEEEcCC
Confidence 466664 4899999999999999999999999999999999999999998874
No 117
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.46 E-value=8.7e-07 Score=80.15 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=81.9
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCc-ccCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
+.+.+|.|+ |-+|+||||+.-.|+..|.++|+||.++-.||..+-+. .+||-.-+.. .....+|+++=|
T Consensus 27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~---------~~~~d~~vfIRS 96 (266)
T PF03308_consen 27 GRAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ---------ELSRDPGVFIRS 96 (266)
T ss_dssp T-SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH---------HHHTSTTEEEEE
T ss_pred CCceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc---------CcCCCCCEEEee
Confidence 356799998 88999999999999999999999999999999765432 2233221111 112345777766
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCC-CCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVR 223 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp-~~~~~~~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~~ 223 (423)
+...+.-. -+.......+..+....||+|||.|-+ |.++. .+ ...+|.+++|..|..-. ++..+..+-
T Consensus 97 ~atRG~lG------Gls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~--~I--~~~aD~~v~v~~Pg~GD~iQ~~KaGim 166 (266)
T PF03308_consen 97 MATRGSLG------GLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV--DI--ADMADTVVLVLVPGLGDEIQAIKAGIM 166 (266)
T ss_dssp E---SSHH------HHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH--HH--HTTSSEEEEEEESSTCCCCCTB-TTHH
T ss_pred cCcCCCCC------CccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH--HH--HHhcCeEEEEecCCCccHHHHHhhhhh
Confidence 54332210 122333333433344689999999975 33333 33 33569999999997542 222222222
Q ss_pred HHHcCCCCEEEEEEeccc
Q 014511 224 MFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 224 ~l~~~~~~~~gvV~N~~~ 241 (423)
.+. --+|+|+.+
T Consensus 167 Eia------Di~vVNKaD 178 (266)
T PF03308_consen 167 EIA------DIFVVNKAD 178 (266)
T ss_dssp HH-------SEEEEE--S
T ss_pred hhc------cEEEEeCCC
Confidence 221 136779965
No 118
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.30 E-value=9e-06 Score=78.23 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=89.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~ 146 (423)
.++|+++ |-.||||||+-+-||+.+. ...+||.+|-+|.+.-... ..+. .....-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~------EQLk---------~Ya~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV------EQLK---------TYADIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH------HHHH---------HHHHHhCCceEE-
Confidence 6889999 7789999999999999999 4568999999999863211 1100 000001121111
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-hhhh-----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~~~~-----~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
......+...+..+ .+||+|+|||.+--. |... .+........+.+|...+ ....++..
T Consensus 266 --------v~~~~el~~ai~~l------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dlke 330 (407)
T COG1419 266 --------VYSPKELAEAIEAL------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDLKE 330 (407)
T ss_pred --------ecCHHHHHHHHHHh------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHHHH
Confidence 11222333344444 688999999976321 1110 111111123334444433 34556777
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEE
Q 014511 221 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 270 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
.++.+..++ +-|+|+++.+ .... + +.+=.+....+.|+.+
T Consensus 331 i~~~f~~~~--i~~~I~TKlD--ET~s----~--G~~~s~~~e~~~PV~Y 370 (407)
T COG1419 331 IIKQFSLFP--IDGLIFTKLD--ETTS----L--GNLFSLMYETRLPVSY 370 (407)
T ss_pred HHHHhccCC--cceeEEEccc--ccCc----h--hHHHHHHHHhCCCeEE
Confidence 777777654 4689998853 3221 1 3444555556666553
No 119
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.26 E-value=3.2e-05 Score=77.39 Aligned_cols=167 Identities=12% Similarity=0.036 Sum_probs=96.6
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEc-
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS- 145 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~- 145 (423)
+.|+.|.|++...|+||||+|+.|+.+|.++ |..+-..|.. .+ +. +..+.++
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~-------------id-------~~----p~~~~~~~ 288 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDV-------------RD-------IV----PSLYLLRE 288 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCCh-------------hh-------cC----Ccceeccc
Confidence 4467899999999999999999999999975 5555532110 00 00 0111110
Q ss_pred --CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcch
Q 014511 146 --FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLA 214 (423)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~---------~~~~~~~~~d~~iiv~~p~~~s 214 (423)
++............+....++.+ . ...+|++||....|+.+.. ..++.... .-+++|+.....+
T Consensus 289 ~~sp~~a~n~~~d~~~~~~~~~~~~-~---~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~ 363 (476)
T PRK06278 289 KMTKYNSIKIGDRGWSDVEEFLEFV-K---NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSG 363 (476)
T ss_pred ccCChHHHhhcCCcccCHHHHHHHH-H---hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCCh
Confidence 01000000000001222334432 1 1468999999987765431 12222222 3467888887777
Q ss_pred HHHHHH----HHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 215 FIDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 215 ~~~~~~----~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
+..+.. ..++++..++++.|+|+|++.... + .+..+++.+..|+|+++.++
T Consensus 364 i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~----~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 364 IEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----I----FEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----H----HHHHHHHHHhcCCCEEEecc
Confidence 544433 345666668899999999975211 1 13456777778999999944
No 120
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.26 E-value=1.4e-05 Score=78.97 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=95.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 148 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 148 (423)
|+.|.|++...|+||||++..|+.+|.++|.+|-.+-..|..-.. .+ .. .+......+++
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD~-~~-------~~------~~~g~~~~nld------ 60 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFIDP-SH-------HE------AVAGRPSRTLD------ 60 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCCH-HH-------HH------HHhCCCcccCC------
Confidence 356889999999999999999999999999999877763321100 00 00 00000001111
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcchHHHH--HHHH
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFIDV--AKGV 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~----~~~~~~~~~d~~iiv~~p~~~s~~~~--~~~~ 222 (423)
.|... ...+++... +..+|++||....|+-+.. ..++....+ -+++|+.+...+..-+ ...+
T Consensus 61 ------~~~~~--~~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~~-PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 61 ------PWLSG--EDGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALDL-PVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred ------hhhCC--HHHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHCC-CEEEEEcCcccHHHHHHHHHHH
Confidence 01000 122333332 2458999999988764321 122222222 3677877777644333 3333
Q ss_pred HHHHc---CCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchhhh
Q 014511 223 RMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 279 (423)
Q Consensus 223 ~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~i~ 279 (423)
..+.. .++++.|||+|++.... + ...+++..+. ++|+++.||..+.+.
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~~~----h----~~~l~~~~~~-~i~vlG~lP~~~~~~ 179 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHGGR----H----ADGIRDALPD-ELTYFGRIPPRDDLE 179 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCcHH----H----HHHHHHhhhh-cCceeEecccCCCCC
Confidence 33333 36889999999964311 0 0122232233 689999999987543
No 121
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5e-06 Score=80.39 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=96.0
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC-CcccccCCCCCceeeeccCCceEE
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLV 144 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~l 144 (423)
.+.+-+|+|+ |-.||||||--+-+|++|.+.++||++.-||+..+..-.-++.. .++.. + ...-+.+.
T Consensus 375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~-------l---~~~~v~lf 443 (587)
T KOG0781|consen 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA-------L---HGTMVELF 443 (587)
T ss_pred cCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH-------h---ccchhHHH
Confidence 3466789988 88999999999999999999999999999999875321111100 00000 0 00111122
Q ss_pred cCCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh-h-----hhhhhcCCCeEEEEeCC--CcchHH
Q 014511 145 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-----TLCQVVPLTAAVIVTTP--QKLAFI 216 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~-~-----~~~~~~~~d~~iiv~~p--~~~s~~ 216 (423)
..|+.. +....-++.++......||+|+|||++.+.+.. + .+.....-|.++.|-++ ...++.
T Consensus 444 ekGYgk---------d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~ 514 (587)
T KOG0781|consen 444 EKGYGK---------DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVD 514 (587)
T ss_pred hhhcCC---------ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHH
Confidence 222222 233445566666556899999999998775421 1 11223345788888665 445666
Q ss_pred HHHHHHHHHHcCCCC--EEEEEEeccc
Q 014511 217 DVAKGVRMFSKLKVP--CIAVVENMCH 241 (423)
Q Consensus 217 ~~~~~~~~l~~~~~~--~~gvV~N~~~ 241 (423)
.+..+-+.+.....+ +-|+++.+++
T Consensus 515 q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 515 QLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHHhcCCCccccceEEEEecc
Confidence 666666666655422 5689988853
No 122
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.92 E-value=8.2e-05 Score=69.65 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=65.1
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+.+++.|+|||+...........+..+|.+++|+.+...........++.+...+.+.+ +++|+++..... .
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~------~ 133 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERAD------F 133 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCC------H
Confidence 577899999999754322223333556899999999887666666777777888888754 578997643321 1
Q ss_pred CChHHHHHHHhCCCeE-EeecCch
Q 014511 254 RGSGSQVVQQFGIPHL-FDLPIRP 276 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip~~~ 276 (423)
....+++.+.++.+.+ ..+|...
T Consensus 134 ~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 134 DKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHhCCCeEEEEecccC
Confidence 2457788888886554 4577644
No 123
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=97.91 E-value=2.8e-05 Score=57.01 Aligned_cols=45 Identities=40% Similarity=0.612 Sum_probs=39.1
Q ss_pred eEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEE
Q 014511 2 QINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 46 (423)
Q Consensus 2 ~i~~~~~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i 46 (423)
+|.+++|+|+|.|++++|+||..+.+.++++++|..++|+.++++
T Consensus 28 ~i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 28 DISIEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 577899999999999999999999999999999999999988764
No 124
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.83 E-value=3.5e-05 Score=75.90 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=45.2
Q ss_pred CceEEEEeeCCC---CCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC
Q 014511 68 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 120 (423)
Q Consensus 68 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~ 120 (423)
..|+|.|+|.-+ |.||||+|+|||..|++.|+||+++ .+.|++...||..
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~k 89 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIK 89 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCC
Confidence 468999999999 9999999999999999999999987 7888888887754
No 125
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=97.79 E-value=9.2e-05 Score=63.74 Aligned_cols=51 Identities=27% Similarity=0.528 Sum_probs=46.5
Q ss_pred EEEeC---C--EEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 3 INEAL---G--EVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 3 i~~~~---~--~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
|.+++ + +|.|+|+||.|+|++.+.+.++++.+|..+++++++++.+.++|+
T Consensus 103 I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~dp~ 158 (174)
T TIGR03406 103 CRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFDPP 158 (174)
T ss_pred EEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEecCC
Confidence 45554 5 899999999999999999999999999999999999999998875
No 126
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.78 E-value=0.00037 Score=63.90 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=61.1
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+++.+.++|||+...........+..+|.+++|+.....-.......++.+++.+.+.+ +++|+++..... .
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~------~ 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD------L 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC------H
Confidence 467889999998643322222333556799999987765444456677778888888865 788997643311 1
Q ss_pred CChHHHHHHHhCCCeE-Eeec
Q 014511 254 RGSGSQVVQQFGIPHL-FDLP 273 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip 273 (423)
...++++.+.++...+ .++|
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 2578899999986544 3355
No 127
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00077 Score=66.49 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=88.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHH-C-CCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEc
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 145 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~-G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~ 145 (423)
...+|++. |..|+||||+..-||..+.. . +.+|.++-+|.+.-... ..+ ......-|+.+..
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigal------EQL---------~~~a~ilGvp~~~ 253 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGH------EQL---------RIYGKLLGVSVRS 253 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHH------HHH---------HHHHHHcCCceec
Confidence 35788988 89999999999999986643 3 47889988887653210 000 0000111222211
Q ss_pred CCCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh--h--hhhhhh---cCCCeEEEEeCCCcchHHHH
Q 014511 146 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--Q--LTLCQV---VPLTAAVIVTTPQKLAFIDV 218 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~--~--~~~~~~---~~~d~~iiv~~p~~~s~~~~ 218 (423)
. .........+. .+ .++|+|+|||+ |.... . -.+..+ ......++|+.+. ....++
T Consensus 254 v---------~~~~dl~~al~----~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~~ 316 (420)
T PRK14721 254 I---------KDIADLQLMLH----EL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDTL 316 (420)
T ss_pred C---------CCHHHHHHHHH----Hh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHHH
Confidence 0 01111112222 22 68999999996 55421 0 111111 1123556666554 344556
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 219 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 219 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
...+..++.. ++-|+|+++.+-... -+.+-.+....+.|+.+.
T Consensus 317 ~~~~~~f~~~--~~~~~I~TKlDEt~~--------~G~~l~~~~~~~lPi~yv 359 (420)
T PRK14721 317 DEVISAYQGH--GIHGCIITKVDEAAS--------LGIALDAVIRRKLVLHYV 359 (420)
T ss_pred HHHHHHhcCC--CCCEEEEEeeeCCCC--------ccHHHHHHHHhCCCEEEE
Confidence 6666677654 457999998643332 145666777777776543
No 128
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.76 E-value=0.00027 Score=60.11 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=37.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
||++++|++. -|+||||+.-.|...|..+|+||.+|--...+
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 6899999954 46899999999999999999999999877655
No 129
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.75 E-value=5.5e-05 Score=75.30 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=45.7
Q ss_pred CceEEEEeeCCC---CCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCC
Q 014511 68 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 120 (423)
Q Consensus 68 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~ 120 (423)
..|+|.|+|.-+ |.||||+|+|||..|++.|+|| ||+ .+.|++...||..
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~k 105 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVK 105 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCC
Confidence 469999999999 9999999999999999999999 888 9999998887654
No 130
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.75 E-value=0.0022 Score=59.92 Aligned_cols=96 Identities=19% Similarity=0.110 Sum_probs=62.6
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+++.+.++|||+...........+..+|.+++|+.....-.....+.++.+.+.+.+.+ +++|+++..... .
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~------~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD------F 133 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 567889999998644322222333556799999988765444456677888888888876 678997643211 1
Q ss_pred CChHHHHHHHhCCC-eEEeecCch
Q 014511 254 RGSGSQVVQQFGIP-HLFDLPIRP 276 (423)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~ip~~~ 276 (423)
....+++.+.++.. +...+|...
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHhCCCceEEEecccc
Confidence 13577888888754 444577643
No 131
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.71 E-value=0.00015 Score=71.51 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=110.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCccccc-----------C---CCCC-cee
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM-----------N---PEKR-TII 134 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~-----------~---~~~~-~i~ 134 (423)
+.|.|.+.-..+|||++++.|...|+++|++|.=+ -+|.-++..+...+...... . ...- .+.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PF--K~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK 79 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPF--KSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK 79 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHhcCCccCCC--chhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEe
Confidence 35677777788889999999999999999998643 33555555443332211000 0 0011 111
Q ss_pred eeccCCceEEcCCCCCCc--ccc-c--CCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhhh--------hhhhhcCC
Q 014511 135 PTEYLGVKLVSFGFSGQG--RAI-M--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------TLCQVVPL 201 (423)
Q Consensus 135 ~~~~~~l~~l~~~~~~~~--~~~-~--~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~~--------~~~~~~~~ 201 (423)
|....+..++-.+...-. ... + .-+.+...+...++.+. +.||+|++-...+.....+ .++....
T Consensus 80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d- 157 (486)
T COG1492 80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD- 157 (486)
T ss_pred ecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhcC-
Confidence 222235555554432111 111 1 01122334555555454 8999999998876543322 2222211
Q ss_pred CeEEEEeCCCcc-hHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecCchh
Q 014511 202 TAAVIVTTPQKL-AFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 277 (423)
Q Consensus 202 d~~iiv~~p~~~-s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~ 277 (423)
.-+++|..=+.- -+..+.-++..+..- .-.+.|+++|+.+-+. .+-...++.+.+..|.|+++.+|+...
T Consensus 158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~------~ll~~gik~Le~~tg~~vlGv~P~~~~ 229 (486)
T COG1492 158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDE------SLLDPGLKWLEELTGVPVLGVLPYLKD 229 (486)
T ss_pred CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCH------HHHhhHHHHHHHhhCCeeEeecccccc
Confidence 234556555542 222333344444322 3457899999854443 223357899999999999999999763
No 132
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.69 E-value=0.00035 Score=67.16 Aligned_cols=44 Identities=36% Similarity=0.423 Sum_probs=37.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
.-+++|.+++ ++||||+|.-||-.+-++|++|.+||+|+.++.+
T Consensus 73 ~~~vmvvG~v-DSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 73 VGVVMVVGPV-DSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred CcEEEEECCc-CcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 3478888555 6999999999999999999999999999977653
No 133
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.67 E-value=0.00031 Score=63.65 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
+...+|.|. |-.|+||||....|-..+..++.+--+|-+||.-..++.
T Consensus 17 ~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy 64 (366)
T KOG1532|consen 17 QRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPY 64 (366)
T ss_pred cCCcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCC
Confidence 344566666 888999999999999999998888999999997655443
No 134
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.66 E-value=0.00016 Score=61.65 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+|+|+ |..|+||||++..|+..|..+|++|.+|..|..+
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45666 5669999999999999999999999999987543
No 135
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.65 E-value=0.0002 Score=64.78 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=34.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|++|.|++.+ |+||||++.+|+..|.++|++|.++..+.
T Consensus 1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFK-DSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 5789999764 99999999999999999999999997643
No 136
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.61 E-value=0.00085 Score=62.63 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=58.8
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|.++.+.++|||+...........+..+|.+++|+.+...--....+.++.++..+.++ -+++|+++..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~~~a~------~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDREGRD------P 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCccCCCC------H
Confidence 57889999999864322222223345679999998875533334556667777778884 4677997543211 1
Q ss_pred CChHHHHHHHhCCCeE-EeecC
Q 014511 254 RGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
....+++.+.++.+.+ ..+|.
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 1346788888886654 34665
No 137
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.61 E-value=0.00024 Score=59.42 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=46.0
Q ss_pred eEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 2 QINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
+|.+++++|.|+|++|.++||..+.|+++++++|... |++++++.+.+.|.
T Consensus 19 ~V~v~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~ 69 (146)
T TIGR02159 19 EVDVDGGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPP 69 (146)
T ss_pred EEEEECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCC
Confidence 4677888999999999999999999999999999987 89999998887764
No 138
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=97.50 E-value=0.00052 Score=53.72 Aligned_cols=52 Identities=29% Similarity=0.532 Sum_probs=46.3
Q ss_pred eEEEeC-CEEEEEEEecCCCCchhHHHHHHHHHHHhcCCCeeeEEEEEEeecC
Q 014511 2 QINEAL-GEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPA 53 (423)
Q Consensus 2 ~i~~~~-~~v~i~l~lt~~~cp~~~~i~~~v~~~l~~i~~v~~v~i~l~~~~~ 53 (423)
+|.+++ +.|.|.++++.|+||..+.+++++++++..++|++++++.+...++
T Consensus 30 ~i~v~~~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~ 82 (99)
T TIGR02945 30 DIDVDDDGHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDPP 82 (99)
T ss_pred EEEECCCCeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeCC
Confidence 366775 8999999999999999999999999999999999999998876553
No 139
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.45 E-value=0.00034 Score=58.46 Aligned_cols=41 Identities=32% Similarity=0.266 Sum_probs=32.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEE-EEEecCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGP 111 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl-liD~D~~~~ 111 (423)
++|+|++.| |+||||++..|...|.++|++|+ +.|.|...+
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~ 42 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQF 42 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTST
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCc
Confidence 478899666 89999999999999999999999 889888443
No 140
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.45 E-value=0.0011 Score=64.92 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=35.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|++|+|++.| |+||||+..+|...|..+|+||.+|--|..
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~hH 40 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSHH 40 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 5799999766 999999999999999999999999876543
No 141
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.41 E-value=0.0012 Score=59.53 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+...........+..+|.+++|+.............++.+...+.+ .-+|+|+++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 457789999987543322333335567999999877543323334445555555555 4578899763
No 142
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.40 E-value=2.5e-05 Score=71.43 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 77 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 77 ~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
|-.|+||||.+.++...+...|++|.+|-+||....+
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~ 39 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENL 39 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccc
Confidence 5679999999999999999999999999999976543
No 143
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.37 E-value=0.0013 Score=58.28 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.+.++|||+-..........+..+|.+++|+.+...-.......+..+.+.+.+.+-+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 56678999998632222222333556899999988865434456677788888888766678899764
No 144
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00035 Score=59.43 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=43.3
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 119 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~ 119 (423)
.+.+.+|-++ |-.|+||||+|..|+..|.++|++|-++|-|--...+..-+|.
T Consensus 20 ~~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 20 GQKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CCCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 3445677777 8899999999999999999999999999999766555544443
No 145
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.30 E-value=0.0017 Score=62.45 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=35.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
||+.+.+.+.-.|||||+++.+|++.|.++|.+|.++-
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 78999999999999999999999999999999999863
No 146
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.28 E-value=0.024 Score=60.89 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCCCh------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 014511 175 GELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 239 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 239 (423)
..+|++||.+.+|+-. ....+..... --+|+|+.+..-++..+...++.++..|+++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 3589999999988631 1111211111 24788999999999999999999999999999999995
No 147
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.25 E-value=0.00057 Score=59.54 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+++|.+. |-.|+||||++..||..|...|.+|.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4577777 8899999999999999999889999999999653
No 148
>PRK04296 thymidine kinase; Provisional
Probab=97.21 E-value=0.0034 Score=55.50 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=29.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
|.+..|-.|+||||.+..++..++.+|++|+++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 444458889999999999999999999999999
No 149
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.19 E-value=0.00071 Score=57.30 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=36.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
.+|-++ |..|+||||+|..|...|..+|.+|.++|.|.-...+
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 456666 9999999999999999999999999999999766443
No 150
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.17 E-value=0.00043 Score=61.38 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=35.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 77 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 77 ~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
|-+|+||||-...+...|+..|.+|.+|-+||.+-.++.
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y 47 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPY 47 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCC
Confidence 889999999999999999999999999999998765543
No 151
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.16 E-value=0.00093 Score=57.10 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=36.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
|++|+|++. .|+||||++..|+..|..+|++|..|..|..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 578899855 59999999999999999999999999887754
No 152
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.16 E-value=0.0025 Score=54.25 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=29.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.|-|+.+. |.||||.|..+|...+.+|+||+++=+
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 34555444 999999999999999999999999644
No 153
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.16 E-value=0.0032 Score=56.52 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=42.9
Q ss_pred cCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 174 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+.+..+.|+|||+ ..+. ......+..+|.+++|+.....-.....+...++...+.+.+-+|+|+++..
T Consensus 74 ~~~~~~~liDTpG-~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 74 TPKRKFIIADTPG-HEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred cCCceEEEEECCc-HHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 3566789999975 3322 1122224567999999887654333444455566666666556778997653
No 154
>PRK12740 elongation factor G; Reviewed
Probab=97.10 E-value=0.0035 Score=66.57 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=61.6
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|.+|++.+||||+...........+..+|.+++|+.+...........+..+...+.+.+ +|+|+++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 478999999998754322222333556899999999876555555666777777787755 578997643311 1
Q ss_pred CChHHHHHHHhCCCeE-EeecC
Q 014511 254 RGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
....+++.+.++.+.+ ..+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 2467788888886543 44664
No 155
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.08 E-value=0.0087 Score=50.69 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~--------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..++++++|||+-..... ........+|.+++++.+............+.+...+.+ ..+|+|+++.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 357899999876332110 111124456888888777665333344555666655556 4678899654
No 156
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.07 E-value=0.00089 Score=60.54 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+....|.+|+||||++.++|..++.+|.+|+++|++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 444455899999999999999999999999999998754
No 157
>PRK07667 uridine kinase; Provisional
Probab=97.06 E-value=0.0013 Score=58.31 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+|++. |-+|+||||+|..|+..|.+.|.+|.++++|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 466666 999999999999999999999999999999974
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.05 E-value=0.0036 Score=54.63 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..++++++|+|+...........+..+|.+++|+.............+..+...+.+ +-+|+|+++.
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~ 126 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR 126 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence 357899999976332222222224467889998887654444445555666655555 5677799754
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=97.01 E-value=0.012 Score=55.73 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~--------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+++.++++|||+-.... ......+..+|.+++++.....-.......++.+...+.++ -+|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pv-ilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPV-ILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCE-EEEEECCcCC
Confidence 44789999997643211 11112244678888888776622233445556666556664 4778997643
No 160
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.98 E-value=0.012 Score=60.40 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=59.5
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
++.+.+.++|||+...........+..+|.+++|+.+...-.....+.++..+..++++ -+++|+++..... .
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~~~a~------~ 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDRDGRE------P 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcccccC------H
Confidence 46788999999864322222223355689999998876543344667777777788885 4677997533211 1
Q ss_pred CChHHHHHHHhCCCeE-EeecC
Q 014511 254 RGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
....+++.+.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 1356788888887643 33554
No 161
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.0014 Score=58.26 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=38.2
Q ss_pred ccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 65 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 65 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
....+.+|+++ |..|+||||++..|+..|...|..+.++|.|...
T Consensus 20 ~~~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 20 HGHKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 33456777777 8889999999999999999889999999998754
No 162
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.95 E-value=0.0056 Score=53.92 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.+||||+-..........+..+|.+++|+.+...-.......+..+...+++ +-+++|+++.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 678899999986432222233335568999999998766566678888899999999 7788899754
No 163
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.91 E-value=0.011 Score=53.65 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChhhhh-hhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLT-LCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~-~~~~--~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+-+.+||||+- ....-. ...+ ..+|.+++|+..+..-.......+..+...+.+. -+|+|+++.
T Consensus 82 ~~~~i~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 5778999999863 322111 2112 2468889888876554556677788888889884 578899764
No 164
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.91 E-value=0.002 Score=59.25 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=32.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH------------CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~------------~G~~VlliD~D~~~ 110 (423)
.+++..+-||+||||++.++|..+|. .+.+|++++++-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 35677799999999999999998873 35689999987543
No 165
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.90 E-value=0.0019 Score=61.41 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+++.|+ |..|+||||++.+++...++.|.+|++||+.-
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 3566666 78999999999999999999999999999864
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.0013 Score=60.22 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=31.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
-.+..|++|+|||+++.++|..|.++|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 45666999999999999999999999999999965
No 167
>PRK05973 replicative DNA helicase; Provisional
Probab=96.87 E-value=0.0017 Score=59.13 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+.+.+|.+|+||||++.++|...+++|.+|+++.++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 455666999999999999999999999999999999864
No 168
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.84 E-value=0.0038 Score=66.64 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=45.7
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
|.+|++.++|||+-..........+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+++.
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 478999999998753322223334567899999987654333344556666666777876 88999754
No 169
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.84 E-value=0.0046 Score=55.65 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=26.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+.+.|+ |++|+||||+|.+|+ .++++++.|-.
T Consensus 12 ~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 12 PNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 3456666 999999999988874 47899999973
No 170
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.002 Score=58.58 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.++.|+ |.+|+|||+++.++|...++.|.+|+++|++
T Consensus 24 ~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555 8999999999999999999999999999998
No 171
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=96.80 E-value=0.00078 Score=51.58 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=24.4
Q ss_pred EEEe-CCeeEEEEcCCCCcccCChHHHHhhh
Q 014511 383 IRPM-GNYAVSITWPDGFSQIAPYDQLQTME 412 (423)
Q Consensus 383 ~~~~-~~~~l~i~w~dgh~s~y~~~~L~~~~ 412 (423)
|.+. ++..|.|.|+|||.+.|++.|||..|
T Consensus 3 i~l~~~~~~l~i~w~DG~~~~~~~~~LRd~C 33 (89)
T PF06155_consen 3 IKLDKDERHLEIEWSDGQESRFPYEWLRDNC 33 (89)
T ss_dssp EEEECCTTEEEEEETTSEEEEEEHHHHHHT-
T ss_pred EEEecCCCEEEEEECCCCEEEECHHHHhccC
Confidence 4433 33579999999999999999999994
No 172
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.80 E-value=0.0069 Score=52.17 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=29.7
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|-|+.+ .|.||||.|..+|...+.+|++|+++=+--
T Consensus 8 i~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK 43 (173)
T TIGR00708 8 IIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIK 43 (173)
T ss_pred EEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 334423 899999999999999999999999986543
No 173
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.79 E-value=0.014 Score=59.91 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=57.4
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+.+.+.|+|||+...........+..+|.+++|+.+...-.......++.++..+.+ +-+++|+++..... .
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~------~ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD------P 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC------H
Confidence 4678899999987432111122235568999999887654334456667777777777 45677997643211 1
Q ss_pred CChHHHHHHHhCCCe-EEeecC
Q 014511 254 RGSGSQVVQQFGIPH-LFDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~ip~ 274 (423)
....+++.+.++... ...+|.
T Consensus 150 ~~ll~~i~~~l~~~~~~~~~PI 171 (527)
T TIGR00503 150 LELLDEVENELKINCAPITWPI 171 (527)
T ss_pred HHHHHHHHHHhCCCCccEEEEe
Confidence 135677888887542 233553
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.77 E-value=0.0034 Score=51.46 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=33.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..+.+. |..|+||||++..+|..+...++.++.++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 356666 7799999999999999998877789999888654
No 175
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.75 E-value=0.039 Score=49.82 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCc--cc--cc--CCCCCceeee--------ccCCc--
Q 014511 78 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL--EM--NPEKRTIIPT--------EYLGV-- 141 (423)
Q Consensus 78 KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~--~~--~~--~~~~~~i~~~--------~~~~l-- 141 (423)
-.|.||=.+|+.++..|..+|++|..+-+||+-+.-+..+.+-.. +. +. ..+.+.-... ...|+
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 568899999999999999999999999999997654443332210 00 00 0000000000 00000
Q ss_pred -----eEEc----CCCCCCcccccCCchHHHHHHHHHHhcc-cCCCcEEEEcCCCCCChhhh-----hhhhhc----C--
Q 014511 142 -----KLVS----FGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL-----TLCQVV----P-- 200 (423)
Q Consensus 142 -----~~l~----~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~iiiD~pp~~~~~~~-----~~~~~~----~-- 200 (423)
.++. ..+.+..... -|.....+++.+..+. ...+|++|+...+..+|.-- ++.|+. .
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQv--iPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n 167 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQV--IPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGREN 167 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEE--CcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCc
Confidence 0000 0000000000 1233344444444332 26899999999988876411 111110 1
Q ss_pred ---CCeEEEEeC--CCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecC
Q 014511 201 ---LTAAVIVTT--PQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 274 (423)
Q Consensus 201 ---~d~~iiv~~--p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 274 (423)
.+..++|.. ....-..-++..++.+++.|+...++|.|.- . .......+.++...+++..+.++.
T Consensus 168 ~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse--~-------pL~e~~keKIAlFcnVpve~VI~~ 237 (255)
T cd03113 168 VLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSE--K-------PLPPEIREKIALFCDVPPEAVISA 237 (255)
T ss_pred EEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCC--C-------CCchHHHHHHHHhcCCCHHHeeec
Confidence 122233322 2333334567778899999999999999861 1 122345667777778877666654
No 176
>PRK00007 elongation factor G; Reviewed
Probab=96.75 E-value=0.013 Score=62.29 Aligned_cols=94 Identities=21% Similarity=0.125 Sum_probs=61.6
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|.++.+.+||||+-.....-....+..+|.+++|+.....-.......+.++.+.+.+.+ +++|+++..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~------~ 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD------F 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 567889999998643221212233556799999988765444456778888888898876 888997644311 1
Q ss_pred CChHHHHHHHhCCCe-EEeecC
Q 014511 254 RGSGSQVVQQFGIPH-LFDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~ip~ 274 (423)
....+++.+.++... ...+|.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecC
Confidence 135778888887542 344665
No 177
>PRK06696 uridine kinase; Validated
Probab=96.73 E-value=0.0029 Score=57.45 Aligned_cols=41 Identities=27% Similarity=0.170 Sum_probs=34.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..+|+|. |.+|+||||+|..||..|...|.+|+.+-+|-+.
T Consensus 22 ~~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3466666 8999999999999999999889999998877654
No 178
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.73 E-value=0.0022 Score=56.24 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=33.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+..|.+|+|||+++.+++...++.|.+|+++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 45569999999999999999999999999999987643
No 179
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.72 E-value=0.072 Score=47.02 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.+.++|||+.-.........+..+|.+++|..............+..+...+.+. -+|+|+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5677899999864322222222244678989888876543333444455555567774 567899765
No 180
>PF13479 AAA_24: AAA domain
Probab=96.70 E-value=0.0064 Score=54.79 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++|+ |..|+||||++..+ -++++||+|..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 45556 99999999998877 59999999864
No 181
>PHA02542 41 41 helicase; Provisional
Probab=96.68 E-value=0.0023 Score=64.44 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=36.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
-+.|.++.+|+||||++.|+|...++.|++|++++++....
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 46666799999999999999999999999999999998654
No 182
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.68 E-value=0.013 Score=55.97 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=35.3
Q ss_pred eEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.||+|-|- .||+|||+++..||..|.++|++|.+|-=...
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 58999766 69999999999999999999999999976543
No 183
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.68 E-value=0.0025 Score=55.70 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
|+|. |..|+||||+|..|+..|...|.++.+|.+|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 4555 8999999999999999999999999999998654
No 184
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.68 E-value=0.0035 Score=56.19 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=34.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++.|+ |.+|+|||+++.++|...++.|.+|+.||++-
T Consensus 13 ~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 566666 89999999999999999999999999999984
No 185
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0039 Score=52.38 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
.|++.|.|+ |.+||||||++.-+|-.|...|++|.-+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 456778887 9999999999999999999999998654
No 186
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.65 E-value=0.0026 Score=54.07 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.6
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
+..|+.|+||||++..++..++..|.+|++++++....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 44589999999999999999999999999999986543
No 187
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.64 E-value=0.043 Score=46.83 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+|--|+||||+...+.... .|+++.++-.|.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 4455888999999999888653 488998877765
No 188
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.63 E-value=0.0063 Score=59.59 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=37.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
++++|.|+ |..|+||||+...|...|.++|++|.+|--|..+
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 57899999 6789999999999999999999999999987654
No 189
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.60 E-value=0.016 Score=49.45 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=42.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+++.++|||+......+.......+|.+++|+.++..........+..+...+.+ +-+|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 468899999986432222222224467889999888654334444455666667777 4667799754
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=96.60 E-value=0.0043 Score=45.84 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=29.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC----CCcEEEEEe
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDA 106 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~----G~~VlliD~ 106 (423)
-+.+..+-+|+|||+++++++..+... |.+|+++-.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 345666999999999999999999865 889999843
No 191
>PRK06762 hypothetical protein; Provisional
Probab=96.59 E-value=0.0031 Score=54.26 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
|+++|.+. |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 45566665 999999999999999888 4568888876543
No 192
>PRK00049 elongation factor Tu; Reviewed
Probab=96.57 E-value=0.02 Score=56.72 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.++++|||+-..........+..+|.+++|+.+...-.......+.++...+.+.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45678999998632211222233456899999988876444556677788888888877678899764
No 193
>PRK15453 phosphoribulokinase; Provisional
Probab=96.56 E-value=0.0046 Score=57.37 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=37.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
...+|+|+ |-.|+||||++..|+..|...|.++.+++.|-+..
T Consensus 4 k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 34688887 88899999999999999988888999999998764
No 194
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.56 E-value=0.0064 Score=63.22 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+|++|+|+ +.-|+||||+...|...|.++|+||.+|.-|..+
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 47899999 5678999999999999999999999999986554
No 195
>PRK12739 elongation factor G; Reviewed
Probab=96.56 E-value=0.027 Score=59.96 Aligned_cols=94 Identities=22% Similarity=0.103 Sum_probs=60.1
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+++.+.++|||+-..........+..+|.+++|+.....--......+..+.+.+.+.+ +++|+++..... -
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~------~ 142 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD------F 142 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 577889999998633222222333556799999988765433445677778888888876 788997654311 1
Q ss_pred CChHHHHHHHhCCC-eEEeecC
Q 014511 254 RGSGSQVVQQFGIP-HLFDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~ip~ 274 (423)
....+++.+.++.. ....+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 143 FRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHhCCCceeEEecc
Confidence 13567787877653 2344564
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.55 E-value=0.033 Score=55.95 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 014511 175 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---~-----~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
..+.+.|+|||+-... . ......+..+|.+++|+.....-...-..+.+.+++.+.++ -+|+|+++
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~D 120 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV-ILVVNKVD 120 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcE-EEEEECcc
Confidence 4577899999754320 0 11122244679899888876532222234556666667774 46779976
No 197
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.55 E-value=0.031 Score=46.99 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~--------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+...... ........+|.+++|+.+..........+.+.++..+.+ +-+|+|+++.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457899999987544211 111123457888888877543222223455666666666 4567799653
No 198
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.051 Score=50.84 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=101.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCc--eEEcC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV--KLVSF 146 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l--~~l~~ 146 (423)
.+++.+.+.---+||=|+|..|...+-..|+++..+-.+..+ . + . ...|+ +-+++
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg-i---l-----------------~--~~~gvvvdav~~ 204 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG-I---L-----------------I--ADDGVVVDAVVM 204 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCcee-e---E-----------------E--ecCceEecchhH
Confidence 579999999999999999999999999999999988776543 1 1 0 01111 11111
Q ss_pred CCCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCCcchHH------
Q 014511 147 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI------ 216 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~~----~~~~~~~~~d~~iiv~~p~~~s~~------ 216 (423)
......+..+.-.....++|+|+|-.-.++.+.. +.+..-.+-|.++++-.|......
T Consensus 205 ------------DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~i 272 (339)
T COG3367 205 ------------DFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPI 272 (339)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcC
Confidence 1223334443333322489999999877665432 223223356889999888655443
Q ss_pred ----HHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEeecC
Q 014511 217 ----DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 274 (423)
Q Consensus 217 ----~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 274 (423)
+...+.+.+. +.+++|+.+|--..+.. .-++..+++...||+|....+.+
T Consensus 273 p~leevi~l~e~l~--~a~Vvgi~lNtr~~dE~------~are~~a~l~~efglP~~Dp~~~ 326 (339)
T COG3367 273 PPLEEVIALYELLS--NAKVVGIALNTRNLDEE------EARELCAKLEAEFGLPVTDPLRF 326 (339)
T ss_pred CCHHHHHHHHHHcc--CCcEEEEEecccccChH------HHHHHHHHHhhccCCcccccccc
Confidence 3333444433 37889999996443331 12345677777888776555444
No 199
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.51 E-value=0.018 Score=54.71 Aligned_cols=40 Identities=38% Similarity=0.530 Sum_probs=35.9
Q ss_pred ceEEEEeeCC-CCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..||+|-|-- ||+|||.++.-||..|.++|++|.+|.=..
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3699999987 999999999999999999999999997543
No 200
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.51 E-value=0.0055 Score=54.98 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=33.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
....+|+|. |..|+||||++..|+..+ .+.++.+++.|...
T Consensus 4 ~~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 344577777 899999999999999988 45689999998754
No 201
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.50 E-value=0.015 Score=50.85 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=30.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|.|+ +-.|.||||.|..+|...+.+|++|+++=+=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 34444 5678999999999999999999999999664
No 202
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.50 E-value=0.0066 Score=55.11 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCC------CcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G------~~VlliD~D~ 108 (423)
.+++.|+ |..|+|||+++.++|...+..| .+|+.||.+-
T Consensus 19 g~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3566666 8999999999999999988777 8999999974
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.0034 Score=50.82 Aligned_cols=30 Identities=43% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
|.|. |..|+||||+|..||..+ |..++-+|
T Consensus 2 I~I~-G~~gsGKST~a~~La~~~---~~~~i~~d 31 (121)
T PF13207_consen 2 IIIS-GPPGSGKSTLAKELAERL---GFPVISMD 31 (121)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHH---TCEEEEEH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHH---CCeEEEec
Confidence 4444 999999999999999987 66554333
No 204
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.49 E-value=0.0086 Score=51.73 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=36.0
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
++.+++|+ |..|+||||+...|...|..+|+||..|-.+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45677777 7789999999999999999999999999876554
No 205
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.47 E-value=0.0038 Score=52.84 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=32.6
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+..|..|+||||+|..|+..+...|.++.++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 4459999999999999999999889999999988754
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=96.47 E-value=0.054 Score=56.44 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=46.4
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
|+++.+.|+|||+...........+..+|.+++|+.....-.......+..+...+++.+ +++|+++..
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~ 133 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRP 133 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 467889999998643322222233456799999988765444455666777777888864 678997643
No 207
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.46 E-value=0.0039 Score=55.05 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=30.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH----------CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~----------~G~~VlliD~D~~~ 110 (423)
-+.+..+.+|+||||++.++|..++. .+.+|++|+++...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 35666699999999999999999997 57899999999754
No 208
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.42 E-value=0.0051 Score=56.63 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=35.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
+|+|+ |-.|+||||++..|+..|.+.|.+|.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 46776 78899999999999999999999999999998765
No 209
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.38 E-value=0.0041 Score=57.47 Aligned_cols=37 Identities=32% Similarity=0.352 Sum_probs=32.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+..|.+|+||||+|..||..|...|++|.++|.|.-
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 3556999999999999999999988999999988753
No 210
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.014 Score=53.76 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCC
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 255 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 255 (423)
+--|--+|||+-....--.+.....+|++|+|+..+.--+-..+.-+=+.++.|++.+-+++|+++.....+.. ..-..
T Consensus 74 ~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ell-elVem 152 (394)
T COG0050 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELL-ELVEM 152 (394)
T ss_pred CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHH-HHHHH
Confidence 34578899986443332222334457999999887766666666666677889999999999998754422110 01112
Q ss_pred hHHHHHHHhCCCe-EEeecCchhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHh
Q 014511 256 SGSQVVQQFGIPH-LFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 315 (423)
Q Consensus 256 ~~~~~~~~~~~~~-~~~ip~~~~i~~a~~~g~pi~~~~p~s~~~~~~~~la~~i~~~~~~~ 315 (423)
...++.+.|+.+- -..|+....+.. ..-+.+....+.+|.+.+.+.+-.-
T Consensus 153 EvreLLs~y~f~gd~~Pii~gSal~a----------le~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 153 EVRELLSEYGFPGDDTPIIRGSALKA----------LEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHHHHHHHcCCCCCCcceeechhhhh----------hcCCcchHHHHHHHHHHHHhcCCCC
Confidence 3445666676541 111222222221 1112235566777776666655433
No 211
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.37 E-value=0.0059 Score=56.76 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+.+|.+|+||||++.++|...+++|.+|+.++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 45555599999999999999999999999999999984
No 212
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.36 E-value=0.029 Score=52.69 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=93.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 147 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~ 147 (423)
..++|++.+.-.-+||=|++..|..+|.++|+++..+=....+= |. .. .|+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGi----mi-a~------------------~Gv------ 161 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGI----MI-AG------------------YGV------ 161 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHH----HC-HS------------------EC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceE----EE-ec------------------CCe------
Confidence 56899999999999999999999999999999999887765431 10 00 000
Q ss_pred CCCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCCcch--------
Q 014511 148 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQKLA-------- 214 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~~-----~~~~~~~~~~d~~iiv~~p~~~s-------- 214 (423)
.............++.+.-.... +.|++||-.-.++... ++.++.-..-|.+|+...|....
T Consensus 162 ----~iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 162 ----PIDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred ----eccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 00112233455667776666542 5599999988776542 23333333469999998884332
Q ss_pred HHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 215 FIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 215 ~~~~~~~~~~l~~~~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
+..+.+.+++++.+. .+++|+-+|-...+... -+...+++++++|+|..-.
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e------~~~~~~~~~~e~glPv~Dp 292 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEE------AKAAIERIEEELGLPVTDP 292 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHH------HHHHHHHHHHHH-S-EE-H
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHH------HHHHHHHHHHHHCCCeeec
Confidence 234455555555442 33899999874433211 1246788899999876543
No 213
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.35 E-value=0.02 Score=48.60 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.+.++|||+.-............+|.+++|...+..-.......+..++..+.+.+-+++|+++.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 4568899997532211112222345788899888764222223333344444555345678899754
No 214
>PRK08233 hypothetical protein; Provisional
Probab=96.33 E-value=0.0037 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=29.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
++|+|.++. |+||||+|..||..|.. ..++..|.+.+
T Consensus 4 ~iI~I~G~~-GsGKtTla~~L~~~l~~--~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIAAVS-GGGKTTLTERLTHKLKN--SKALYFDRYDF 40 (182)
T ss_pred eEEEEECCC-CCCHHHHHHHHHhhCCC--CceEEECCEEc
Confidence 677777555 99999999999998742 47888887754
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.33 E-value=0.0057 Score=55.87 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~~ 109 (423)
.++.+. |..|+||||++.++|...... +.+|+.||++..
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 456665 899999999999999775543 379999999863
No 216
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.33 E-value=0.0054 Score=57.39 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=33.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 108 (423)
+.+..+..|+||||++.++|..++.. |.+|+++.++.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 55566999999999999999999887 99999999975
No 217
>PRK13351 elongation factor G; Reviewed
Probab=96.29 E-value=0.05 Score=58.04 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=60.2
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|..+.+.++|||+-..........+..+|.+++|+.....-.......++.+...+.+++ +++|+++..... -
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~------~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGAD------L 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCC------H
Confidence 467789999998643222222333456799999988766544455667777777788865 688997543211 1
Q ss_pred CChHHHHHHHhCCCeE-EeecC
Q 014511 254 RGSGSQVVQQFGIPHL-FDLPI 274 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~ip~ 274 (423)
...++++.+.++.+.. ..+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 2467788888886543 23554
No 218
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.28 E-value=0.072 Score=49.83 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChh-h-------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI-Q-------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~-------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.++++|||+-.... . .....+..+|.+++|+.++...... ....+.++..+.+. -+|+|+++.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 34568999997633210 0 0112234678899888876543333 45566676677775 477899764
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.28 E-value=0.026 Score=58.71 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=46.9
Q ss_pred cCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 174 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~-~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
|.++.+.|||||+ ..+.. .....+..+|.+++|+.............+..+...+++. -+++|+++.
T Consensus 61 ~~~~kinlIDTPG-h~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 61 YNGTKINIVDTPG-HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred ECCEEEEEEECCC-HHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 5678899999975 43321 2222345679999998886655556677778888888886 477899764
No 220
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.27 E-value=0.12 Score=55.25 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=59.2
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccC
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 253 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 253 (423)
|+++.+.++|||+-..........+..+|.+++|+.....-.......+..+.+.+.+.+ +++|+++..... -
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------~ 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN------F 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998643322222223456799999988765333344566777777888865 688997644311 0
Q ss_pred CChHHHHHHHhCCCe-EEeecCc
Q 014511 254 RGSGSQVVQQFGIPH-LFDLPIR 275 (423)
Q Consensus 254 ~~~~~~~~~~~~~~~-~~~ip~~ 275 (423)
....+++.+.++... ...+|..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135677888777533 3456653
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.26 E-value=0.0077 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
.|.++ |.+|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 34444 8999999999999999875
No 222
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.25 E-value=0.008 Score=52.73 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=35.5
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+++.+|.+. |..|+||||++..|+..+...|..++++|.|.-.
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 455666666 8889999999999999998888889999887643
No 223
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.25 E-value=0.0099 Score=52.07 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=37.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 112 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~ 112 (423)
||+.-.++-|-.|+||||...++-...-..|+++-+|-+||..-.
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH 45 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence 445555566888999999999999999999999999999996543
No 224
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.0047 Score=57.57 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=34.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH----CC------CcEEEEEecCCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPSL 113 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~----~G------~~VlliD~D~~~~~~ 113 (423)
+.++.-+-||+||||++..|..+|+. .| .+|+.|.+....+++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence 55666699999999999999999883 25 378999888776654
No 225
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0062 Score=58.78 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=32.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
-+...+|-+|.||||+-..+|..||+++ +||+|-..-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 3455569999999999999999999998 999997654
No 226
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.22 E-value=0.0054 Score=58.89 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=35.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 111 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~~~ 111 (423)
++|..|-.|+||||++..|+..|. ..|++|.++|.|-.-+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 356779999999999999999998 5899999999997543
No 227
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.20 E-value=0.0072 Score=55.48 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=34.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~ 109 (423)
-+.+.++..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 345555999999999999999999987 999999999874
No 228
>PLN03127 Elongation factor Tu; Provisional
Probab=96.10 E-value=0.085 Score=53.04 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.+++||||+--............+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45678999998643322222333456899999998765434456677788888898877778899764
No 229
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.06 E-value=0.059 Score=46.54 Aligned_cols=43 Identities=16% Similarity=0.015 Sum_probs=32.3
Q ss_pred ccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 63 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 63 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
..+.....+...+ | .|=||||-|..+|...+-+|+||+++=+=
T Consensus 16 ~~~~~~Gli~VYt-G-dGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 16 LPYTIEGLVQVFT-S-SQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred cCCCCCCEEEEEe-C-CCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 3344444454444 3 56799999999999999999999999664
No 230
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.013 Score=50.92 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=33.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+|.+. |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 3566665 88999999999999999998888899998654
No 231
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.01 E-value=0.0086 Score=52.26 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=29.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+-+.+. |..|+|||.+|..+|..+.++|++|+.+...
T Consensus 47 ~~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 3456666 6789999999999999999999999999864
No 232
>PRK05439 pantothenate kinase; Provisional
Probab=95.98 E-value=0.015 Score=55.10 Aligned_cols=44 Identities=30% Similarity=0.319 Sum_probs=36.5
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHC--CCcEEEEEecCCC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 110 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 110 (423)
.+.+.+|+|+ |-.|+||||+|..|+..|.+. |.+|.+|..|-+-
T Consensus 83 ~~~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3455677777 889999999999999999763 7899999999754
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.98 E-value=0.07 Score=48.31 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=44.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
..+.+.|+|||+-..........+..+|.+++|+.....-.......++.+...+.+ +-+++|+++
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 467789999987544333333445678999999887654444556666666666777 457789975
No 234
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.97 E-value=0.014 Score=42.16 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.2
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
|++. |-.|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4554 888999999999999999 6788888876
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.01 Score=54.91 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
.+-+.+. |+.|||||.+|+.+|..+.+.|.+|+++-.
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3456666 999999999999999999988999999854
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.95 E-value=0.015 Score=57.75 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=43.8
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.+.|+|||+ ..+. ......+..+|.+++|+.....-.......+..+..++.+.+-+++|+++.
T Consensus 78 ~~~~~~liDtPG-h~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPG-HEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 567899999986 3222 122233556899999988765433344455666667777766788999764
No 237
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.94 E-value=0.01 Score=52.55 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=31.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCc----EEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~----VlliD~D~~ 109 (423)
||+|+ |-+|+||||+|..|+..|.+.|.. +.++..|.+
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 46666 888999999999999999988876 677777654
No 238
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.94 E-value=0.3 Score=42.19 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCceee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
.+.+-|+|+|+.-....+....+..+|.+++|...+ ..++..+...+..+... +.+ +.+|.|+++.....
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~---- 136 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQR---- 136 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcC----
Confidence 456789999863221112222244578888887764 45666666666655442 333 56788997643211
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
.......+++++.++.+
T Consensus 137 ~v~~~~~~~~~~~~~~~ 153 (180)
T cd04127 137 QVSEEQAKALADKYGIP 153 (180)
T ss_pred ccCHHHHHHHHHHcCCe
Confidence 11223455666666643
No 239
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.91 E-value=0.016 Score=52.41 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=41.8
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+..+.+.++|||+...........+..+|.+++|+...... .......+......+.+.+-+++|+++..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 36788999999853222222222244579999998776531 11334444455566655566788997643
No 240
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.90 E-value=0.012 Score=54.66 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~ 110 (423)
-+.+.++.+|+|||+++.|+|..++.. |++|+++.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 456666999999999999999999987 6999999998754
No 241
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.90 E-value=0.039 Score=48.68 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..+.+.++|||+- ... .........+|.+++|+.............+......+.+ +-+++|+++.
T Consensus 66 ~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 4788999999753 322 1111222346888888877542212222233334445665 4478899764
No 242
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.021 Score=47.32 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=42.1
Q ss_pred cccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcc
Q 014511 64 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 115 (423)
Q Consensus 64 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~ 115 (423)
.+.+.+-+|-++ |-.|+||||+|..|..+|-++|+-.-.+|-|--...+..
T Consensus 26 l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~ 76 (207)
T KOG0635|consen 26 LLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK 76 (207)
T ss_pred HhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc
Confidence 345667788888 788999999999999999999999999999865544433
No 243
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.86 E-value=0.064 Score=44.68 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~-------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.++++++|+|+..... .........+|.+++++.+..............+...+.+. -+|+|+++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPV-LLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeE-EEEEEcccc
Confidence 6789999998733211 11111234578888888877655544444444555556664 578899653
No 244
>PRK06526 transposase; Provisional
Probab=95.86 E-value=0.0057 Score=56.59 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=30.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+-+.++ |.+|+|||++|.+||..+.++|++|+.+.+
T Consensus 99 ~nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 345444 899999999999999999999999987544
No 245
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.83 E-value=0.04 Score=52.99 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=36.4
Q ss_pred ceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..||+|-|- -||+|||-++..||..|.++|++|.+|.=...+
T Consensus 56 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 56 VPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 468988885 799999999999999999999999999765433
No 246
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.009 Score=52.29 Aligned_cols=38 Identities=29% Similarity=0.219 Sum_probs=32.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
+.+.+|-+|+||||.|-+||..|.+.+.+|.-+..|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 34556999999999999999999999999988777654
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.78 E-value=0.074 Score=42.53 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 014511 175 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 239 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 239 (423)
....++++|||+-... ..........+|.+++|+..+...-.....+++.++ .+ ..+-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~-~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NK-KPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TT-SEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cC-CCEEEEEcC
Confidence 3456789999874331 001222234678888888877633344566667775 33 446667775
No 248
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.78 E-value=0.27 Score=42.55 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.|.+.|+|+|+.-....+.......++.++++...+ ..++..+......+.+ .+.+ +-++.|+++..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhh
Confidence 467889999764322112112233456666665543 4455555555444432 2445 45888997643
No 249
>PRK15494 era GTPase Era; Provisional
Probab=95.77 E-value=0.14 Score=49.68 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCCCCh---hh--h---hhhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGD---IQ--L---TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---~~--~---~~~~~~~~d~~iiv~~p~~~s~~~~-~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.++++|||+.... .. + ....+..+|.+++|+.... ++... ...++.++..+.+.+ +|+|+++.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4556899999864221 00 0 0111346788888877543 33333 345666666666655 67899764
No 250
>COG1159 Era GTPase [General function prediction only]
Probab=95.76 E-value=0.14 Score=47.62 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=69.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 150 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~ 150 (423)
.+++. |++.|||||+.-+| .|.|+.++.-=+|-.- ..+. |+..
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR------------------~~I~-----GI~t------- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTR------------------NRIR-----GIVT------- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhh------------------hhee-----EEEE-------
Confidence 57888 99999999987654 4889999866554310 0110 1100
Q ss_pred CcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCCh------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 014511 151 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 222 (423)
Q Consensus 151 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~~------~--~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~ 222 (423)
.+++.+|++|||+-... . ......+..+|.+++++..+..--.+-...+
T Consensus 51 -----------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 51 -----------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred -----------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 15788999999864322 1 1112224457889988888774444556667
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 014511 223 RMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 223 ~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.++..+.+++ +++|+++.
T Consensus 108 ~~lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HHHhhcCCCeE-EEEEcccc
Confidence 77777656654 55698753
No 251
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.70 E-value=0.56 Score=40.97 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 242 (423)
.+.+.+.|+|+.-....+....+..+|++++|...+ ..++..+...+..+.... ...+-+|.|+.+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 466789999764322212222244678888887764 345556666555555432 1236778899654
No 252
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.70 E-value=0.032 Score=57.31 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=34.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~ 110 (423)
.++.+. |-+|+||||++.+++...+++ |.+|+.|.++-..
T Consensus 32 s~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 32 RPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 456665 899999999999999988877 9999999998643
No 253
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.69 E-value=0.021 Score=57.46 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=48.7
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCH 241 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~ 241 (423)
++.+.+.|||||+-..........+..+|.+++|+.+...-+ ..+.+.+..+..++++.+-+++|+++
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 467889999998633322223333556899999988765432 35677788888899998888999976
No 254
>CHL00071 tufA elongation factor Tu
Probab=95.64 E-value=0.12 Score=51.37 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.++++|||+ ..+. ......+..+|.+++|+.+...-.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~~iDtPG-h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 456789999986 3322 122233446799999988775444556667778888888877778899764
No 255
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.64 E-value=0.016 Score=57.93 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=33.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 109 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~ 109 (423)
+.+.++.+|+|||+++.|+|..+| +.|++|+++.++..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 456669999999999999999998 67999999998863
No 256
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.64 E-value=0.11 Score=51.50 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|||+--............+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999998632222222222345699999988765434455677777888888877778899764
No 257
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.64 E-value=0.17 Score=42.26 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 242 (423)
..+++.++|+|+...........+..+|.++++..++. .++..+...+..+.... .+ +-++.|+++.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 34678999998754322222233445788888887754 45666677676666543 44 5678899765
No 258
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.63 E-value=0.33 Score=41.15 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+-|+|+|+.-....+....+..+|.++++...+. .++..+......+.+ .+.+ +-+|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 3567789997643222222222445687777766543 455555554444432 2445 44778997643
No 259
>PRK12736 elongation factor Tu; Reviewed
Probab=95.61 E-value=0.1 Score=51.67 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.+.++|||+--.........+..+|.+++|+..+..-.......+.++...+++.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 45678999998632212222233445799999988765434455667777888888877788999764
No 260
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.61 E-value=0.024 Score=52.73 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=36.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
.++++|. |-.|+|||+++.+++...++.|.+|+.|.++-...
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~ 64 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPE 64 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHH
Confidence 3566666 99999999999999999999999999999987543
No 261
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.58 E-value=0.019 Score=52.02 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=32.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH--CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~~~ 110 (423)
+|+|. |-.|+||||++..|+..|.. .+.+|.+|-.|-+.
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 35666 88999999999999999975 56789999888663
No 262
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.58 E-value=0.24 Score=42.04 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 242 (423)
..+.+-|.|||+.-....+....+..+|.+++|..++. .+...+...++.+.+. +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccC
Confidence 35677899997643222222222446788888888754 4556666666666543 445 4578899654
No 263
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.56 E-value=0.026 Score=51.34 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.+. +..|+||||++.+++...+++|.+|++++++..
T Consensus 21 ~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 455555 899999999999999988888999999998643
No 264
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=95.56 E-value=0.13 Score=45.78 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+-+.++|||+.-.........+..+|.+++|+...... .......+..+...+.+.+-+|+|+++.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 56899999864222222223344569999998876521 1223344455555565545678899764
No 265
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.54 E-value=0.28 Score=41.35 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+...........+..++.++++... +..++..+......+... +.+ +-+|.|+++.
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 46789999987433222222224456777766554 344555566655555443 455 5677899764
No 266
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.53 E-value=0.024 Score=51.70 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++.+. |-.|+||||++.+++..++++|.+++.++++..
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 355555 999999999999999999999999999997753
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.47 E-value=0.025 Score=51.73 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++.|+ +-.|+||||++.++++..+++|.+|++++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 455555 89999999999999999888999999999974
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.47 E-value=0.024 Score=54.13 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+++-|+ |..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 455555 78999999999999999999999999999854
No 269
>PLN03126 Elongation factor Tu; Provisional
Probab=95.47 E-value=0.096 Score=53.05 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++.+.+||+|+--.........+..+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 45678999998532221222233446799999987765444556677778888888877788999764
No 270
>PRK12377 putative replication protein; Provisional
Probab=95.46 E-value=0.022 Score=52.35 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.-+.++ |..|+|||+++..+|..|.+.|++|+++...
T Consensus 102 ~~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 345555 8899999999999999999999999988764
No 271
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.44 E-value=0.25 Score=43.73 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=38.0
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC-CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL-KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~ 242 (423)
+.+.|+|+|+.-....+....+..++++++|..+. ..++..+...++.+... ....+-+|.|+++.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 46789999764322222222244567788877664 45666666666666543 22234578899764
No 272
>PRK05595 replicative DNA helicase; Provisional
Probab=95.43 E-value=0.021 Score=57.50 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~ 109 (423)
-+.+.++.+|+|||+++.|+|..+| ++|++|+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4556669999999999999999887 56999999998763
No 273
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.41 E-value=0.022 Score=50.50 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.0
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
|++. |-.|+||||++..|+..+ .+.++.++.+|...
T Consensus 2 igi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 5555 789999999999999988 56689999999654
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.41 E-value=0.19 Score=45.59 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
...+.++|||.... ..+.. ...+|.+++++.....-......+++.+...+.+.+-+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~~-~~l~~--ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDIN-AMIDI--AKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchHH-HHHHH--HHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 34578999986441 12222 345788888887754333344567777877787755568898754
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=95.41 E-value=0.024 Score=52.64 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=30.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
..+.++ |..|+|||+++..+|..+..+|++|+.+++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 445555 889999999999999998899999998863
No 276
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.40 E-value=0.36 Score=41.18 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+.|.|+|+.-....+....+..+|.++++... +..++..+...+..+... +.+ +-+|.|+++.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 35678899987443222222224467888888654 455666666666666543 233 4577798654
No 277
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.40 E-value=0.29 Score=43.00 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=38.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 356789999874322221222233468888877664 34566666666666544 333 5577799764
No 278
>PRK06217 hypothetical protein; Validated
Probab=95.37 E-value=0.023 Score=49.86 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.|.|. |-.|+||||+|..||..| |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 456666 789999999999999876 443 677774
No 279
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.36 E-value=0.079 Score=46.85 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=63.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCce-eeeccCCceEEcCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTI-IPTEYLGVKLVSFGF 148 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~l~~l~~~~ 148 (423)
..+.+- |--|+|||-++..+++.+-..|++|.++-.-. +. ..++...+ ...-.+ ..--+..+.++|...
T Consensus 29 sL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~--T~-refi~qm~------sl~ydv~~~~l~G~l~~~~~~~ 98 (235)
T COG2874 29 SLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL--TV-REFIKQME------SLSYDVSDFLLSGRLLFFPVNL 98 (235)
T ss_pred eEEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEech--hH-HHHHHHHH------hcCCCchHHHhcceeEEEEecc
Confidence 344444 88899999999999999999999999997643 21 11111100 000011 111134566666432
Q ss_pred CCCcccccCCchHHHHHHHHHHhcccCCCcEEEEcC
Q 014511 149 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 184 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~ 184 (423)
. ...|........++.+++..+..++|+||||+
T Consensus 99 ~---~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDS 131 (235)
T COG2874 99 E---PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDS 131 (235)
T ss_pred c---ccccChHHHHHHHHHHHhhHHhhcCCEEEEec
Confidence 2 22344455566777777776667899999998
No 280
>PRK12735 elongation factor Tu; Reviewed
Probab=95.34 E-value=0.13 Score=50.92 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
++..+.++|||+--.........+..+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45568999998632211222233446799999988765334445567777778888877678899765
No 281
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.31 E-value=0.4 Score=47.23 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=65.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCCCCCcccccCCCCCceeeeccCCceEEcCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 149 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~ 149 (423)
.+|+++ |++.|||||+=--|+ |.|+.+|+ |.-|-+- +.++.
T Consensus 4 ~~VAIV-GRPNVGKSTLFNRL~------g~r~AIV~-D~pGvTR-----------------Dr~y~-------------- 44 (444)
T COG1160 4 PVVAIV-GRPNVGKSTLFNRLT------GRRIAIVS-DTPGVTR-----------------DRIYG-------------- 44 (444)
T ss_pred CEEEEE-CCCCCcHHHHHHHHh------CCeeeEee-cCCCCcc-----------------CCccc--------------
Confidence 689999 999999999855443 67888875 3323110 11110
Q ss_pred CCcccccCCchHHHHHHHHHHhcccCCCcEEEEcCCCCCC-h---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 014511 150 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-D---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAK 220 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~iiiD~pp~~~-~---~-----~~~~~~~~~~d~~iiv~~p~~~s~~~~~~ 220 (423)
..+|....+.+|||++-.. + . ..+..++..+|.+++|+.....-...=..
T Consensus 45 ---------------------~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ 103 (444)
T COG1160 45 ---------------------DAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEE 103 (444)
T ss_pred ---------------------eeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 0124667799999975331 1 1 11233355689999988876522222234
Q ss_pred HHHHHHcCCCCEEEEEEecccc
Q 014511 221 GVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 221 ~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+.+.|...+.|+ -+|+|++..
T Consensus 104 ia~~Lr~~~kpv-iLvvNK~D~ 124 (444)
T COG1160 104 IAKILRRSKKPV-ILVVNKIDN 124 (444)
T ss_pred HHHHHHhcCCCE-EEEEEcccC
Confidence 456666665664 456699754
No 282
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.27 E-value=0.034 Score=49.11 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=31.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
++.|+|. |--|+||||.+..||..|...|++|..+-.
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3567776 888999999999999999999999976643
No 283
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.25 E-value=0.025 Score=52.79 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.+.+|-+|+||||+|..|+..|...|++|.+|+.|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3455699999999999999999999999999999654
No 284
>PRK08506 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.027 Score=57.05 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=34.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
-+.|.++.+|+|||+++.|+|...++.|++|+++.+....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 3556669999999999999999999999999999988643
No 285
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.23 E-value=0.032 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+|+|. |--|+||||++..|+..|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666 888999999999999999999999976654
No 286
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.13 Score=48.88 Aligned_cols=42 Identities=33% Similarity=0.532 Sum_probs=36.9
Q ss_pred ceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
..||+|-|- -||.|||-+++-||..|.++|.++.++.=...+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 368888875 799999999999999999999999999877544
No 287
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.19 E-value=0.49 Score=40.76 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+......+....+..+|.++++... +..++..+....+.+.+. +.| +-+|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl 119 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDL 119 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhh
Confidence 45678899976433222222224456777777655 445666666555555432 344 5677799764
No 288
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.16 E-value=0.037 Score=50.19 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=33.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..++.+. +..|+|||+++.+++...+++|.+|++++++-
T Consensus 16 g~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 16 GHVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3466665 77999999999999999888999999999976
No 289
>COG2403 Predicted GTPase [General function prediction only]
Probab=95.14 E-value=0.031 Score=53.16 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=35.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
..+|+|+...-|+|||+++.-+|..|..+|+||++|=.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 46999999999999999999999999999999999976
No 290
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.13 E-value=0.29 Score=41.63 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=39.0
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+... +.+ +-+|.|+++.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 120 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDL 120 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 578999998743222222222345788888877655 4556666666666543 344 4577898764
No 291
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.12 E-value=0.36 Score=41.02 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 242 (423)
+++.+.++|+|+-..........+..+|.+++|+..... ++..+...+..+.+ .+.+ +-++.|+++.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 456789999975322222222224467888888876543 34444444433322 2456 5578899764
No 292
>PRK06749 replicative DNA helicase; Provisional
Probab=95.08 E-value=0.031 Score=55.88 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=34.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
-+.|.++.+|+|||+++.|+|...|++|++|+++.+....
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 3555569999999999999999999999999999888754
No 293
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.08 E-value=0.038 Score=50.02 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=33.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.++ |..|+||||++..++..+.+.|.+++.+|++..
T Consensus 39 ~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 39 RFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 455666 899999999999999999888899999998653
No 294
>PRK08760 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.029 Score=56.83 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~ 110 (423)
-+.|.++.+|+||||++.|+|...|. .|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 45555699999999999999999985 59999999888743
No 295
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.00 E-value=0.032 Score=53.60 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=33.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+-+.++ |..|+|||+++..+|..+..+|++|+.+.++-
T Consensus 183 ~~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 3556666 78999999999999999999999999998743
No 296
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.00 E-value=0.33 Score=40.95 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=38.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
+.+.++|+|+.-.........+..+|.++++..+.. .+...+.+.+..+... +.+ +-+|.|+++.
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDL 117 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 567899998643222222222445788888877754 4555565555555442 344 5677798764
No 297
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.98 E-value=0.63 Score=39.81 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 242 (423)
+.+.+.|+|+|+......+....+..+|.+++|...... ++..+...+..+.+ .+.+ +-+|.|+.+.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 456789999986433222222234567888888877553 45555555554432 2344 5678899754
No 298
>PLN02924 thymidylate kinase
Probab=94.98 E-value=0.053 Score=49.05 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=34.2
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+++++.|+|- |--|+||||.+..|+..|..+|++|.++..
T Consensus 13 ~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 13 ESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 3567788887 888999999999999999999999876643
No 299
>PRK08118 topology modulation protein; Reviewed
Probab=94.98 E-value=0.026 Score=48.74 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
|+.|.|. |-+|+||||+|..|+..+
T Consensus 1 m~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 1 MKKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3567777 789999999999988766
No 300
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.98 E-value=0.14 Score=51.49 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=48.5
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
++.+-+.|||+|+--.........+..+|.+++|+.....++ ..+.+.+.++...+++.+-+++|+++.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 367789999998633322233344557899999988876433 356667777778899878888999764
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.96 E-value=0.04 Score=55.42 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=33.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+..|.+|+||||++..+|..++++|.+|++++..-
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 35555599999999999999999998899999999853
No 302
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.96 E-value=0.046 Score=52.19 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.5
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
.|.-..|..|+|||+++.++|...+. .|.+|+.||..-
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 44545599999999999999976542 356999999874
No 303
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.96 E-value=0.2 Score=50.16 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~--------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
.+..+.|+|||+-... .......+..+|.+++|+.+...-........+.+++.+.++ -+|+|+++..
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~~ 120 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDGK 120 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccCC
Confidence 4456899999763211 011122244578888888876532333345566677777774 4677997643
No 304
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.95 E-value=0.038 Score=55.58 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
-+.+.+|..|+||||++.++|..+++.|.+|++++..-
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 44556699999999999999999999999999999864
No 305
>COG4240 Predicted kinase [General function prediction only]
Probab=94.94 E-value=0.038 Score=49.15 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=33.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~~VlliD~D~ 108 (423)
..|...||-.|+||||+|+.|-..|+.+| .+|+-+.+|-
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 45666669999999999999999999987 7999998874
No 306
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.92 E-value=0.047 Score=44.98 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=32.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+.++ |..|+||||++..++..+...+.+|..+++....
T Consensus 20 ~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 345555 9999999999999999998888899998876543
No 307
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.91 E-value=0.042 Score=49.95 Aligned_cols=39 Identities=33% Similarity=0.344 Sum_probs=34.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~ 108 (423)
.+-++|. |..|+|||+++..|...+. +.|.+++++|..-
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3578888 8899999999999999999 8899999998743
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.89 E-value=0.042 Score=53.77 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+..|.+|+||||++..+|..+++.|.+|++++...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 35555699999999999999999999999999998763
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.89 E-value=0.049 Score=49.91 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=33.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++.|. |-+|+|||+++.++++..+++|.+|+++.++-.
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 455555 999999999999999998899999999999863
No 310
>PRK04040 adenylate kinase; Provisional
Probab=94.87 E-value=0.038 Score=48.68 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=25.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 101 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~V 101 (423)
|+++|+|+ |-.|+||||++..|+..|. .|+++
T Consensus 1 ~~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 1 MMKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CCeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 35677777 8999999999999999885 24444
No 311
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.85 E-value=0.47 Score=40.09 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCCCC--EEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKVP--CIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~~~~--~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-.........+..+|.++++..++ ..++..+...++.+.....+ .+-++.|+.+.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 456789999764322222222234578888887765 44566666666666554311 34567798653
No 312
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.82 E-value=0.056 Score=51.19 Aligned_cols=44 Identities=30% Similarity=0.183 Sum_probs=37.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 113 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 113 (423)
...+.|+ |---+||||++.-|-.+..++|++.+.+|+|++.++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 4566666 4457999999999999999999999999999998864
No 313
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.80 E-value=0.055 Score=49.26 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=32.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE-EEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll-iD~D~~ 109 (423)
..+|++. |..|+||||++..|+..+...+-.+.+ +.+|..
T Consensus 33 ~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 33 RTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4567776 999999999999999999987666666 777654
No 314
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.027 Score=47.48 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
+|+| ||+.|+||||+|.-||..|.
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHhC
Confidence 4555 59999999999999988774
No 315
>PRK08006 replicative DNA helicase; Provisional
Probab=94.78 E-value=0.042 Score=55.52 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 109 (423)
-+.|..+.+|+|||++|.|+|..+|. +|++|+++.+...
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 45555599999999999999999984 6999999988764
No 316
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.76 E-value=0.62 Score=39.63 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCC--CEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~~--~~~gvV~N~~~~ 242 (423)
.+.+.|.|+|+......+.......+|++++|...+. .++..+...++.+..... ..+-+|.|+++.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4678899997643222222222446788888877654 556666666665544321 246778899754
No 317
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=94.76 E-value=0.34 Score=52.15 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~------------~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+++++.++|+|+..+... ........+|.+++|+..+... ........+.+.+.| .-+++||++.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhh
Confidence 567889999986432110 0011112578888888876532 222344566677877 4567799765
Q ss_pred cCCCceeeccCCChHHHHHHHhCCCeEEe
Q 014511 243 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 271 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
..+.. . ....+++++.+|.|++..
T Consensus 125 ~~~~~----i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 125 AEKQN----I-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred hhccC----c-HHHHHHHHHHhCCCEEEE
Confidence 32211 1 135678889999886654
No 318
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.74 E-value=0.04 Score=50.04 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~ 109 (423)
.++.|. |-.|+|||+++.++++..+++ |.+|++|.++..
T Consensus 20 s~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 20 SVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred cEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 355555 889999999999999999998 999999999764
No 319
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.73 E-value=0.045 Score=52.07 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+-+.++ |..|+|||.++..+|..|+++|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 455555 8899999999999999999999999998764
No 320
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.72 E-value=0.045 Score=55.01 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=34.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~ 110 (423)
-+.+.++.+|+||||++.++|..++. .|++|+++.++...
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 35566699999999999999999986 69999999998743
No 321
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=94.70 E-value=0.49 Score=42.47 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCcee
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~-----~~~~gvV~N~~~~~~~~~~~ 249 (423)
.+.+.|.|+|+.-....+....+..+|.+++|...+. .++..+....+.+.+.. ...+-+|.|+.+.....
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--- 125 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--- 125 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc---
Confidence 3567899997532211121122446788888877654 46666666666665432 12466788997653211
Q ss_pred eccCCChHHHHHHHhCC
Q 014511 250 YPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (423)
.......+.+.+.++.
T Consensus 126 -~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 126 -TVKDDKHARFAQANGM 141 (215)
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1112234556666553
No 322
>PRK08727 hypothetical protein; Validated
Probab=94.69 E-value=0.047 Score=49.90 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
-+.++ |..|+|||.++..++..+.++|++|..+.++
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 34554 8899999999999999999999999999754
No 323
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.68 E-value=0.073 Score=50.14 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=33.7
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHC--CCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 110 (423)
.+.+|+|+ |-.|+||||++..|+..+.+. +.+|.++..|...
T Consensus 61 ~p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 34677777 889999999999999888753 4479999998755
No 324
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=94.68 E-value=0.65 Score=41.15 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCC------Chh--hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecc
Q 014511 176 ELDYLVIDMPPGT------GDI--QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMC 240 (423)
Q Consensus 176 ~yD~iiiD~pp~~------~~~--~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~------~~~~~gvV~N~~ 240 (423)
.+.+.|+|||+.. +.. ......+..+|.+++|..... .++..+....+.+.+. +.| +-+|.|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 3678899997521 110 001122446799988887744 4566566555554332 233 56788997
Q ss_pred cc
Q 014511 241 HF 242 (423)
Q Consensus 241 ~~ 242 (423)
+.
T Consensus 127 Dl 128 (198)
T cd04142 127 DQ 128 (198)
T ss_pred cc
Confidence 65
No 325
>PRK09354 recA recombinase A; Provisional
Probab=94.68 E-value=0.053 Score=52.22 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=33.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+++-|+ |-.|+||||++.+++...++.|.+|+.||+.-
T Consensus 60 G~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 60 GRIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 3455555 78999999999999999999999999999874
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.66 E-value=0.038 Score=47.62 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.|.+. |..|+||||+|..||..| |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 455555 999999999999999987 43 4556663
No 327
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.66 E-value=0.49 Score=40.15 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCCC--CEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~~~--~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+......+....+..++.++++... +..++..+.+.+..+.+... ..+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35678899976432222222223456767777555 45666666666666654321 235677899764
No 328
>PRK05642 DNA replication initiation factor; Validated
Probab=94.63 E-value=0.048 Score=49.86 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=31.0
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+..|..|+|||.++..++..+.++|++|+.++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 44599999999999999999988899999999863
No 329
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.61 E-value=0.74 Score=39.09 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+-|+|+|+......+.......+|.+++|...+ ..++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 356788999764322222222234578888887664 34566666666555543 234 5567798653
No 330
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.59 E-value=0.65 Score=40.66 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=36.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 242 (423)
+.+-|+|+++.-....+.......+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 34567788764322111111133568888887664 44555555566666544 344 5677899764
No 331
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.59 E-value=2.8 Score=36.43 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+ .. .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 133 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNA---- 133 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC----
Confidence 45678999998643222222222456788888887653 4455555444333 22 1233 5678899754221
Q ss_pred eccCCChHHHHHHHhCC
Q 014511 250 YPFGRGSGSQVVQQFGI 266 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (423)
...+++.+.++.
T Consensus 134 -----~~~~~i~~~l~~ 145 (182)
T PTZ00133 134 -----MSTTEVTEKLGL 145 (182)
T ss_pred -----CCHHHHHHHhCC
Confidence 123466666664
No 332
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.59 E-value=0.52 Score=40.26 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=38.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
..+.|.|+|+.-....+.......+|.++++.... ..++..+...+..+++. +.+ +-+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 45788998764322222222234568888887764 45666666666656543 333 5677798654
No 333
>PTZ00416 elongation factor 2; Provisional
Probab=94.58 E-value=0.18 Score=54.89 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
.+|-+.++|||+......-....+..+|.+++|+.+...-......+++.+...+.+.+ +++|+++..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35678999998754332223344556899999998776544556778888888887754 667997543
No 334
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.56 E-value=0.22 Score=46.68 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=33.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
...+|.++ +..|+||||+...|...|... +++.+|+-|..
T Consensus 103 ~~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 103 KQLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 34677777 779999999999999998655 58999988874
No 335
>PF13173 AAA_14: AAA domain
Probab=94.55 E-value=0.051 Score=44.52 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+++.+. |--||||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 455565 7778999999999998887 55789999998643
No 336
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.54 E-value=0.38 Score=51.61 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.++.+.|+|||+--....+.......+|.+++|+..+..........+..+...+++ +-+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccc
Confidence 346789999986432222222234457889999877654444555566777777888 5578899764
No 337
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.54 E-value=0.34 Score=49.28 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~--------~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
....+.|+|||+-..+. ......+..+|.+++|+..+......-..+.+.++..+.++ -+|.|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pi-ilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPV-ILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccC
Confidence 45568899997632110 01112244579999998876532222345566666667774 467799764
No 338
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.53 E-value=0.058 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=31.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+..|..|+|||+++..++..+.+.|.++..+++..
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345599999999999999999988899999999864
No 339
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.52 E-value=0.08 Score=45.66 Aligned_cols=28 Identities=46% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 79 GGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 79 GGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
-|=||||-|+.+|...+-.|+||+++=+
T Consensus 12 ~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 12 DGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp SSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred CCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 3579999999999999999999999865
No 340
>PRK06761 hypothetical protein; Provisional
Probab=94.51 E-value=0.048 Score=51.05 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=30.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE-EEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll-iD~D~ 108 (423)
+++|.|. |..|+||||++..|+..|...|.+|-. .+.|+
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3455555 889999999999999999888888865 45554
No 341
>PRK08840 replicative DNA helicase; Provisional
Probab=94.48 E-value=0.055 Score=54.60 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 109 (423)
-+.|.++.+|+|||+++.|+|...|. +|++|+++.+...
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 45555699999999999999999984 6999999988864
No 342
>PRK07933 thymidylate kinase; Validated
Probab=94.48 E-value=0.088 Score=47.36 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.|+|- |--|+||||.+..|+..|..+|++|.++..-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~ 38 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFPR 38 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56666 67789999999999999999999999987643
No 343
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=94.47 E-value=0.063 Score=50.63 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=47.1
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHhccc-ccceeeeccCCcEEEEEeCCCCceEeechhhhhcCCCCCCc
Q 014511 289 VAADPCGEVANTFQDLGVCVVQQCAKIRQQ-VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQS 359 (423)
Q Consensus 289 ~~~~p~s~~~~~~~~la~~i~~~~~~~~~~-~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c 359 (423)
+....+++-...|..-+......+...... .+..++++...+.|.|+|+||.. +.|+..|||+-|....-
T Consensus 43 iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~-s~Fpl~wlker~fs~~~ 113 (407)
T KOG3888|consen 43 IWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHH-SQFPLQWLKERCFSSQV 113 (407)
T ss_pred eeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCc-ccCCHHHHHhhCcchHH
Confidence 333334555555544444333333333222 34568899999999999999999 99999999999877643
No 344
>PTZ00035 Rad51 protein; Provisional
Probab=94.47 E-value=0.085 Score=50.96 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.0
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
..++.|+ |..|+||||++..|+..... .+.+|+.||...
T Consensus 118 G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 118 GSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 3455555 89999999999999877652 456899999864
No 345
>PRK08181 transposase; Validated
Probab=94.46 E-value=0.045 Score=51.00 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
+-+.++ |..|+|||.++..+|..+.++|++|+.+.+
T Consensus 107 ~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 345555 899999999999999999999999999876
No 346
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.45 E-value=0.36 Score=48.34 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=42.1
Q ss_pred cCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 174 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 174 ~~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
++.+.+.++|||+--.........+..+|.+++|+.... .-.......+.++...+.+.+-+++|+++.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 367889999998632211112222446799999987764 211223444555666676667788899764
No 347
>PF12846 AAA_10: AAA-like domain
Probab=94.45 E-value=0.055 Score=51.09 Aligned_cols=34 Identities=41% Similarity=0.480 Sum_probs=29.8
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
+..|+.|+||||+..++...+...|.+++++|..
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3449999999999999999999999999999443
No 348
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=94.44 E-value=3.5 Score=37.23 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC-C-CEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK-V-PCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~~-~-~~~gvV~N~~~~ 242 (423)
..|.+.|+|+++.-....+.......+|.+++|...+ ..++..+...+..+.+.. . ..+-+|.|+++.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 3567899999864332222222244578888886654 346666655444443321 1 235678899765
No 349
>PRK06904 replicative DNA helicase; Validated
Probab=94.43 E-value=0.053 Score=54.90 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.1
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 109 (423)
-+.|.++.+|+|||+++.|+|...|. .|++|+++-+...
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 35555699999999999999999885 5999999988864
No 350
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.40 E-value=0.061 Score=48.13 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=30.1
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
...+|+|. |..|+||||++..|+..+.. ..+.++..|..
T Consensus 5 ~g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 34677777 89999999999999987754 45677777765
No 351
>PRK05433 GTP-binding protein LepA; Provisional
Probab=94.39 E-value=0.32 Score=50.81 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
..|.+.|+|||+-..........+..+|.+++|+.....--......+..+...+++ +-+|+|+++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 457789999976433222222235567999999887543222233334444456777 4577899764
No 352
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.38 E-value=0.13 Score=52.46 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 108 (423)
+++.|. |-.|+||||+|.+++..-+++ |.+++.|.++-
T Consensus 22 ~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 22 RSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 455555 899999999999999887665 99999999974
No 353
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.37 E-value=0.2 Score=48.89 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCC--CChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeecc
Q 014511 175 GELDYLVIDMPPG--TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 175 ~~yD~iiiD~pp~--~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
.++-+=|+|||+- +++.++-. +.++|.+++|+....---..+.++.+.++--++|++-+| |+.+-..+..
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRt--LtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rdP----- 150 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRT--LTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRDP----- 150 (528)
T ss_pred CCeEEeccCCCCccccchhHHHH--HHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCCh-----
Confidence 3445668999863 33334433 567899999998766555567788888888899987776 8854333221
Q ss_pred CCChHHHHHHHhCCC
Q 014511 253 GRGSGSQVVQQFGIP 267 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~ 267 (423)
-+.+.++++.+++.
T Consensus 151 -~ELLdEiE~~L~i~ 164 (528)
T COG4108 151 -LELLDEIEEELGIQ 164 (528)
T ss_pred -HHHHHHHHHHhCcc
Confidence 15788999999753
No 354
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.36 E-value=0.97 Score=38.04 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
+.+-|.|+|+.-....+.-.....++.++++... +..++..+....+.+.+. +.++ -+|.|+++.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 118 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM-VLVGNKCDL 118 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 4567889976432211111113356777777554 345666666665555432 3554 478899764
No 355
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.36 E-value=0.079 Score=51.99 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+-+|+|. |-.|+||||++..|...+...|.+|..|..|-.-
T Consensus 211 ~PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 34566666 8889999999999998888778999999888643
No 356
>PRK06547 hypothetical protein; Provisional
Probab=94.35 E-value=0.054 Score=46.97 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..+.+|+|. |..|+||||+|..||..+ | +.++++|-.
T Consensus 13 ~~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 345677776 899999999999998874 3 445566643
No 357
>PRK05748 replicative DNA helicase; Provisional
Probab=94.35 E-value=0.055 Score=54.62 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=33.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~ 110 (423)
-+.+.++.+|+||||++.|+|...|. .|++|+++.+....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 35555699999999999999999885 59999999887644
No 358
>PRK05380 pyrG CTP synthetase; Validated
Probab=94.34 E-value=0.24 Score=50.15 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=41.3
Q ss_pred CceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccC
Q 014511 68 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV 117 (423)
Q Consensus 68 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~ 117 (423)
|+|-|.|++| -.|.||=.+|+.|+..|..+|++|..+-+||+-+.-+..+
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gtm 51 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTM 51 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCC
Confidence 4577777755 6788999999999999999999999999999976544433
No 359
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=94.33 E-value=0.069 Score=51.25 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=35.4
Q ss_pred ceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..||+|-|- -||+|||-++..||..|.++|++|.+|-=..
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 468999885 7999999999999999999999999996643
No 360
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=94.33 E-value=0.82 Score=38.45 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=38.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-CC-CCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-LK-VPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~-~~-~~~~gvV~N~~~~ 242 (423)
+.+.++|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+ -..+-++.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 457899997643322222222445688888877654 355666666665543 22 1236678898765
No 361
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.31 E-value=0.72 Score=38.97 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 242 (423)
..+.+.++|+|+--....+....+..+|.+++|...+. .++..+...++.+.+. +.+ .-+|.|+++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 34678999997522111122222445788888877654 3455555666665544 233 5667899754
No 362
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.30 E-value=1.7 Score=39.17 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~-~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.- ...... ... .+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~-~~~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 49 ESTLVVIDHWEQE-MWTEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEeCCCcc-hHHHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 4678899997643 111111 122 5788888876644 4666666666666543 344 5677799764
No 363
>PRK06893 DNA replication initiation factor; Validated
Probab=94.30 E-value=0.063 Score=48.92 Aligned_cols=35 Identities=9% Similarity=-0.158 Sum_probs=31.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+..|..|+|||+++..+|..+.++|.+|..+.++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34449999999999999999999999999999885
No 364
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.27 E-value=0.046 Score=49.35 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=25.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHH--------HHCCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~L--------a~~G~~VlliD 105 (423)
+++.+|-+|+||||+.+.++..+ ...+.+|+++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67888999999999999999998 45577777764
No 365
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=94.27 E-value=0.58 Score=40.22 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 242 (423)
.+.+-|.|+|+.-....+....+..+|.+++|..... .++..+...++.+.+.. ...+-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 3567899998643322222233456788888887744 46666666666553322 1236678899764
No 366
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.26 E-value=0.073 Score=54.22 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=35.4
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
-.+.+.+|-.|+||||++.+++...+++|.+|+++-++-.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3566666999999999999999999999999999998864
No 367
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.26 E-value=0.78 Score=40.62 Aligned_cols=67 Identities=15% Similarity=0.032 Sum_probs=35.5
Q ss_pred CCcEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK--VPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~---~-----~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 242 (423)
.+.++|+|+|+-... . .........+|.++++...... +........++++..+ -..+-+|.|+++.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 347889999763211 0 0011113357888888766543 3333444445555442 1235678899754
No 368
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.26 E-value=0.11 Score=55.32 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.|....|-.|+||||++.+++...+++|.+|+.||..-.-
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~ 100 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL 100 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch
Confidence 4444558999999999999999988999999999987543
No 369
>PRK06321 replicative DNA helicase; Provisional
Probab=94.24 E-value=0.066 Score=54.13 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=33.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~~ 110 (423)
-+.|.++.+|+|||+++.|+|..+| +.|++|+++.+....
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 3555569999999999999999998 469999999887643
No 370
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.22 E-value=0.11 Score=50.16 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH---C---CCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG---M---GARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~---~---G~~VlliD~D~ 108 (423)
..|.-..|..|+|||+++.+||...+. . +.+|+.||..-
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 355555699999999999999976652 1 36999999964
No 371
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=94.21 E-value=0.35 Score=50.71 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 178 DYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 178 D~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
-+-|+|||+ .... ......+..+|.+++|+..+..-.......+..+...+.+.+-+|+|+++.
T Consensus 52 ~i~~IDtPG-he~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 52 VLGFIDVPG-HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred EEEEEECCC-HHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 467999985 3222 222233456799999988776544555666677777888876789999764
No 372
>PRK04328 hypothetical protein; Provisional
Probab=94.18 E-value=0.089 Score=48.60 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=33.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.++.|. |-.|+|||+++.++++.-+++|.++++|+++-.
T Consensus 24 s~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 24 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 455555 889999999999999998888999999999763
No 373
>PRK07261 topology modulation protein; Provisional
Probab=94.16 E-value=0.062 Score=46.55 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
.|+|+ |.+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46676 789999999999987654
No 374
>PRK08116 hypothetical protein; Validated
Probab=94.16 E-value=0.069 Score=49.87 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=30.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.+..|..|+|||.++..+|..|.++|++|+++++.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 44558899999999999999999889999999753
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.16 E-value=0.042 Score=45.71 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=25.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+..|..|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 45669999999999998876654 67788887
No 376
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.16 E-value=3.3 Score=36.98 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC-C--CCEEEEEEecccccCCCceeec
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL-K--VPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~-~--~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
.+.+.|+|+|+.-....+.......+|.+++|...+ ..++..+...++.+.+. + ...+-+|.|+.+..... .
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~ 126 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----Q 126 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----c
Confidence 356789999764322222222234568888877764 35666666666655432 1 23456778996543211 1
Q ss_pred cCCChHHHHHHHhCC
Q 014511 252 FGRGSGSQVVQQFGI 266 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (423)
......+++.+.++.
T Consensus 127 v~~~~~~~~~~~~~~ 141 (211)
T cd04111 127 VTREEAEKLAKDLGM 141 (211)
T ss_pred cCHHHHHHHHHHhCC
Confidence 122334555555553
No 377
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.15 E-value=0.079 Score=47.01 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=27.3
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+.+..|..|+||||+...++..+...|++|+++-
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4444588999999999999999999999999873
No 378
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.14 E-value=0.062 Score=46.36 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=27.9
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
||+.|.++ |-.|+||||++..||..| |. -++|.|..
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~~ 36 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQW 36 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccHH
Confidence 45667776 889999999999999877 44 35788753
No 379
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.12 E-value=0.07 Score=47.39 Aligned_cols=34 Identities=41% Similarity=0.468 Sum_probs=26.3
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
||++|+++ |+-|+||||+|--+ ++.|.. +||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~~~----~~~G~~--vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKIL----AELGFP--VIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHHH----HHcCCe--EEEccH
Confidence 67899999 89999999998644 445654 577875
No 380
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=94.11 E-value=0.29 Score=51.68 Aligned_cols=95 Identities=20% Similarity=0.105 Sum_probs=64.2
Q ss_pred cC-CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeecc
Q 014511 174 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 174 ~~-~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
|. +|.+=+||||+-.....-...++..+|++++|+.+...-...+...++++.+.++|.+-+ +|+++-....
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~f-iNKmDR~~a~------ 144 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILF-VNKMDRLGAD------ 144 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEE-EECccccccC------
Confidence 56 488999999986654333334456689999999887766667788899999999996655 4986432211
Q ss_pred CCChHHHHHHHhCCCe-EEeecCc
Q 014511 253 GRGSGSQVVQQFGIPH-LFDLPIR 275 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~~-~~~ip~~ 275 (423)
-....+++.+.++.+. ...+|..
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg 168 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIG 168 (697)
T ss_pred hhhhHHHHHHHhCCCceeeecccc
Confidence 1246778888887543 3345553
No 381
>PLN02796 D-glycerate 3-kinase
Probab=94.11 E-value=0.089 Score=50.48 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=33.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
+-+|+|. |..|+||||++..|+..+...|.++..|-.|-.
T Consensus 100 pliIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 100 PLVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 3456666 889999999999999999887888888888753
No 382
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=94.11 E-value=0.9 Score=38.30 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
+.+.|+|+|+......+....+..+|.+++|...+. .++..+......+.+ .+.+ +-+|.|+++..
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCcccc
Confidence 457789998643322222222445687877766543 345555554444433 2445 45667997643
No 383
>PF05729 NACHT: NACHT domain
Probab=94.06 E-value=0.061 Score=45.69 Aligned_cols=26 Identities=38% Similarity=0.274 Sum_probs=22.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMG 98 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G 98 (423)
.+..|.+|+||||++..++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 45559999999999999999999865
No 384
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.04 E-value=1.2 Score=37.48 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-------CCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-------VPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~~-------~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+.-....+.......+|.++++..++. .++..+...+..+.+.. ...+-+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 34678899998642222121122345788888887654 34555555555554321 1245677899764
No 385
>PRK06921 hypothetical protein; Provisional
Probab=94.04 E-value=0.075 Score=49.56 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=31.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~ 106 (423)
..-+.++ |..|+|||+++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 889999999999999999988 999998875
No 386
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.04 E-value=1.2 Score=37.46 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-.........+..+|.++++..++. .++..+...+..++.. +.+ +-+|.|+.+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 4677899997642211122222345788888876654 4555555555555433 344 5677898654
No 387
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.03 E-value=0.78 Score=38.63 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCceeec
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYP 251 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~ 251 (423)
..+++.|+|+|+.-....+....+..+|.+++|...+ ..++..+...+..+.+ .+.+ +-+|.|+.+......
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~---- 123 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAV---- 123 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccC----
Confidence 3467899999874322222222244578777776653 3455555555555543 2455 457779976433211
Q ss_pred cCCChHHHHHHHhCCC
Q 014511 252 FGRGSGSQVVQQFGIP 267 (423)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (423)
...+..+++.+.++.+
T Consensus 124 v~~~~~~~~~~~~~~~ 139 (162)
T cd04106 124 ITNEEAEALAKRLQLP 139 (162)
T ss_pred CCHHHHHHHHHHcCCe
Confidence 1113345566666654
No 388
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.02 E-value=0.53 Score=39.59 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 242 (423)
.+++.++|+|+...........+..+|.+++|..+... ++..+...+..+.. .+.+ +-++.|+++.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 56789999987543222222223467888888888765 45555444433322 2334 5566899754
No 389
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.99 E-value=0.12 Score=49.94 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=30.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~~ 109 (423)
..|....|..|+|||+++.++|...+. .+.+|+.||..-.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 345555599999999999999976542 1248999999753
No 390
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.96 E-value=1.1 Score=38.31 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~-~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
.+.+-|+|+|+.-... .+.......+|.+++|..++. .++..+....+.+... +.| +-+|.|+++.
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4678899997632211 111111335688888877754 4566666666555543 344 5677899764
No 391
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.96 E-value=0.12 Score=49.28 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+++-+++. .|+||||++.++...+.+.|..+++||....
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 688999954 6899999999999999889999999999653
No 392
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=93.95 E-value=0.071 Score=48.35 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=26.4
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 103 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 103 (423)
+|+|+ |+.||||+...||..|..+|+||++
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~~g~~v~~ 30 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLV 30 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 46666 4589999999999999999999988
No 393
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=93.92 E-value=0.18 Score=52.55 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+--............+|.+++|+..+..-.......+..++..+++.+-+++|+++.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3678999997532212222333446799999988876433444555566777788867788999764
No 394
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.89 E-value=0.07 Score=45.57 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 102 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 102 (423)
.|+|+ |-+||||||++--|+ ..|+++.
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH----HhCCcee
Confidence 57777 889999999998877 4466654
No 395
>PRK09165 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.078 Score=54.08 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=32.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC---------------CCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~---------------G~~VlliD~D~~~ 110 (423)
-+.+.++.+|+||||++.|+|...|+. |++|+++.+....
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 345556999999999999999999853 7889999887643
No 396
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.89 E-value=0.064 Score=52.46 Aligned_cols=39 Identities=33% Similarity=0.331 Sum_probs=32.8
Q ss_pred cccccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcE
Q 014511 62 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 101 (423)
Q Consensus 62 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~V 101 (423)
.+++....+=|.|+ |-+|.||||.|..||..++.+|+=|
T Consensus 256 ~eRL~eraeGILIA-G~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 256 KERLEERAEGILIA-GAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred HHHHHhhhcceEEe-cCCCCChhHHHHHHHHHHHhcCcEE
Confidence 45555667788888 8899999999999999999999743
No 397
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.88 E-value=1.1 Score=38.11 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCC------hh-hhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 014511 178 DYLVIDMPPGTG------DI-QLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 242 (423)
Q Consensus 178 D~iiiD~pp~~~------~~-~~~~~~~~~~d~~iiv~~p~~~--s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 242 (423)
.+.++|||+-.. .. ......+..+|.+++|...... ++..+....+.+.+. +.+ +-+|+|+++.
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl 126 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL 126 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc
Confidence 688999987321 00 1111113347889988887664 556666666665543 334 4578899764
No 398
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.87 E-value=0.088 Score=48.16 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=31.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+..|..|+|||+++..+|..+.+.|++|..+.++-
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 344599999999999999999998999999999875
No 399
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.85 E-value=0.75 Score=47.94 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 178 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 178 D~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.|+|||+--....+.......+|.+++|+..+..........+..++..+++ +-+++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECccc
Confidence 689999986433222222224457889999877654444455556666777888 5577899764
No 400
>PRK05636 replicative DNA helicase; Provisional
Probab=93.81 E-value=0.092 Score=53.53 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHH-HCCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~~VlliD~D~~~ 110 (423)
-+.+.++..|+||||++.|+|...+ +.|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 4555569999999999999999888 468999999887643
No 401
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.81 E-value=0.99 Score=38.17 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---------~--~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
+..++.++|||+-... . .........+|.+++++................+...+.+ +-+++|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence 3456889999763211 0 0011123356888888876554333334455555555666 4577899753
No 402
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.78 E-value=0.09 Score=55.50 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=37.0
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
.++++|.+. |..|+||||+|..|+..|...|..+.++|.|.-..
T Consensus 458 ~~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 458 QKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 345666665 99999999999999999988899999999997654
No 403
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.76 E-value=2.2 Score=37.08 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCEEEEEEecccccCCCcee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHFDADGKRY 249 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~~~~~~~ 249 (423)
+.+.+.++|+|+......+....+..+|.+++|+..... ++..+...+..+ +. .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----
Confidence 456788999986433222222224467888888776433 344444333332 21 2444 6677899754221
Q ss_pred eccCCChHHHHHHHhCCC
Q 014511 250 YPFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (423)
-..+++.+.++..
T Consensus 134 -----~~~~~i~~~l~l~ 146 (184)
T smart00178 134 -----ASEDELRYALGLT 146 (184)
T ss_pred -----CCHHHHHHHcCCC
Confidence 2356788888753
No 404
>PRK13947 shikimate kinase; Provisional
Probab=93.76 E-value=0.096 Score=45.11 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=25.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
+.|.+. |-.|+||||++..||..| |++ ++|.|.
T Consensus 2 ~~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 2 KNIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 345555 889999999999999887 544 477775
No 405
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.76 E-value=1.8 Score=38.52 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCCC--CEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~~~--~~~gvV~N~~~~~ 243 (423)
.+.+-|.|+++.-....+...-+..+|++++|... +..++..+...++.+++... ..+-+|.|+++..
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 46788999975432222222224467888888654 45677777776666664321 2356788997653
No 406
>PRK06851 hypothetical protein; Provisional
Probab=93.75 E-value=0.24 Score=48.20 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.7
Q ss_pred cCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 66 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 66 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
....+++.+ +|..|+||||+...++..+.++|++|.+.=|-..
T Consensus 211 ~~~~~~~~i-~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d 253 (367)
T PRK06851 211 EGVKNRYFL-KGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD 253 (367)
T ss_pred cccceEEEE-eCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 344455555 5999999999999999999999999999876443
No 407
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.74 E-value=0.062 Score=45.21 Aligned_cols=33 Identities=39% Similarity=0.396 Sum_probs=25.5
Q ss_pred EEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 73 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 73 ~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+.+|..|+||||+|..|+..+ | ..++|.|...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 3556999999999999998874 3 3567887654
No 408
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.74 E-value=0.085 Score=46.70 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.4
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
||++|+++ |.-|+||||++..|+. .|. -++|+|--
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 56788888 8889999999998775 365 56899863
No 409
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.74 E-value=1.7 Score=36.67 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 243 (423)
.+.+.|+|+|+.-....+.-.....+|+++++...+ ..++..+......+.. .+.| +-+|.|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcch
Confidence 456678999764322222222234567777776543 4456666655555432 2355 45888997653
No 410
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.73 E-value=0.063 Score=47.14 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=25.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|+|. |..|+||||+|..|+..+. .+.+|..|-.
T Consensus 2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 5555 8899999999999998862 4677777743
No 411
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.094 Score=46.80 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=33.0
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 112 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~ 112 (423)
.+|+|+ |-.|+||||+|..|...|... +|.+|-.|-+-.+
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~ 48 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD 48 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence 577777 778999999999999998754 8999999876543
No 412
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.67 E-value=4.1 Score=35.35 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHH----cCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~----~~~~~~~gvV~N~~~~ 242 (423)
..+.+.++|+|+--....+....+..+|.+++|...+.. ++..+...+..+. ..+.+ +-+|.|+++.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 346688999975321111111223357888888876543 3444444333332 23445 5677799753
No 413
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.67 E-value=0.087 Score=51.35 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.8
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH--HHCCCcEEEEEec
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDAD 107 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D 107 (423)
|.+.|++|..|+|||.++.+||..| ...+.+++++-..
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 3566777999999999999999999 6677777766543
No 414
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.63 E-value=1 Score=37.55 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 243 (423)
.+.+.++|+|+...........+..+|.++++...+. .++..+......+... +.+ +-+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccc
Confidence 4667899998754322222222445688888876643 4555555555555432 344 56888997643
No 415
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.62 E-value=0.072 Score=43.47 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=30.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~~~ 110 (423)
.+.+..|..|+|||+++.+++..+... ..+|+.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 345555999999999999999999864 5788888887655
No 416
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.51 E-value=0.47 Score=47.65 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---------~--~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.++.++|||+.... . ..+...+..+|.+++|+.........-.+.+..+.+.+.++ -+++|+++.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~-ivv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRAL-VIVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcE-EEEEECccC
Confidence 4567899999863210 0 01112244579999998887644444445666666666664 478899764
No 417
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.48 E-value=0.32 Score=53.03 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.|-+-+||||+-.....-....+..+|.+++|+.....-.....+.++.+...+.+. -+++|+.+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~-i~~iNK~D~ 162 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 162 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCE-EEEEECCcc
Confidence 455679999864433333334456789999999877554455677888888888886 467799654
No 418
>PLN03110 Rab GTPase; Provisional
Probab=93.46 E-value=4.4 Score=36.35 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+.+-|.|+|+......+.......++.+++|.... ..++..+...+..+... +.+ +-+|.|+++.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 129 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDL 129 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhc
Confidence 356778899764322222222344578788877664 45666666666666543 333 5577899764
No 419
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.40 E-value=0.16 Score=46.67 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=34.8
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCc--EEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~--VlliD~D~~~ 110 (423)
+..-+|+++ |-.||||||+|..|+..|++.+.+ |-+|=+|-..
T Consensus 80 ~~pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 80 QRPFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 345677777 888999999999999999998655 8888777543
No 420
>PRK07004 replicative DNA helicase; Provisional
Probab=93.39 E-value=0.1 Score=52.78 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=33.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 110 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~ 110 (423)
-+.|.++.+|+|||+++.|+|..+|. .|++|+++-+....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 34555699999999999999999884 69999999887754
No 421
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=93.35 E-value=2.5 Score=35.85 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 242 (423)
.+.+.++|+|+.-....+.......++.+++|...+ ..++..+...++.++.. +.+ +-+|.|+++.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE 120 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence 466789999865433322222234567777776553 45566666666666542 344 5578899764
No 422
>PRK13946 shikimate kinase; Provisional
Probab=93.30 E-value=0.11 Score=45.65 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=26.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.|.+. |-.|+||||++..||..| |.+ ++|.|.
T Consensus 10 ~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 10 KRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 3566666 789999999999999888 555 677774
No 423
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.28 E-value=0.17 Score=44.92 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
++.|+|. |--|+||||++..|+..|...|+.|...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 3577777 8889999999999999999888776654
No 424
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=93.24 E-value=0.47 Score=40.30 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 014511 175 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 246 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~--------~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 246 (423)
.+..+.++|+|+-.+. ...........|.++.|+.+... ..-..+...+.+++.| +-+++||++.-.+.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIP-VVVVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSS-EEEEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCC-EEEEEeCHHHHHHc
Confidence 4578999999874321 11122222367899999988764 3333456667788888 45677997654422
Q ss_pred ceeeccCCChHHHHHHHhCCCeEEeec
Q 014511 247 KRYYPFGRGSGSQVVQQFGIPHLFDLP 273 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ip 273 (423)
... -..+.+.+.+|.|++....
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~sa 143 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVSA 143 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEBT
T ss_pred CCE-----ECHHHHHHHhCCCEEEEEe
Confidence 211 1478899999998766543
No 425
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=93.22 E-value=2.1 Score=37.48 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 242 (423)
+.+-|+|+|+.-....+....+..+|.+++|... +..++..+...++.+... +.+ +-+|.|+++.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl 118 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDK 118 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhc
Confidence 4577889976432222222223456777777554 344566666666655432 344 4567899764
No 426
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=93.21 E-value=1.9 Score=36.63 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=37.0
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 243 (423)
+.+.+.|+|+......+....+..+|.+++|.... ..++..+...++.+.+.. ...+-+|.|+++..
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 45788899753221122222234567777776543 445555665555555432 22367788997653
No 427
>PLN03108 Rab family protein; Provisional
Probab=93.19 E-value=5.3 Score=35.58 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCceeecc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 252 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~ 252 (423)
+.+-|+|++.......+....+..+|.+++|...... ++..+...+..+... +.+ +-+|.|+.+...... .
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~----~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRA----V 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccC----C
Confidence 3466788875332222222223456788888776543 444454444444322 344 456779876433111 1
Q ss_pred CCChHHHHHHHhCCCeEEeecCchhhhhcccCCCceEeeC--CCCHHHHHHHHHHHHHHHHHH
Q 014511 253 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD--PCGEVANTFQDLGVCVVQQCA 313 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ip~~~~i~~a~~~g~pi~~~~--p~s~~~~~~~~la~~i~~~~~ 313 (423)
.....+++.+.++.+ +++.. ......+.|..+++.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~--------------------~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 130 STEEGEQFAKEHGLI--------------------FMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CHHHHHHHHHHcCCE--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 112344555555532 11111 122456668888888776654
No 428
>PLN03118 Rab family protein; Provisional
Probab=93.16 E-value=1.4 Score=39.22 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=35.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHH-HHHHc----CCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSK----LKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~-~~l~~----~~~~~~gvV~N~~~~ 242 (423)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+ ..+.. .+.+ .-+|.|+++.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4678999998753322222222445788888876544 3455554432 22221 1233 4567799654
No 429
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.14 E-value=0.14 Score=41.66 Aligned_cols=31 Identities=32% Similarity=0.257 Sum_probs=24.3
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 75 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 75 ~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..|..|+||||++..+|..+ |..++-+|+..
T Consensus 3 l~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred EECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 34889999999999999987 56666666543
No 430
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.09 E-value=0.24 Score=48.63 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
+.+|.|+ |..|+||||++..|...|..+ ++|.++.-+..
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 3588888 667899999999999999999 99999986544
No 431
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.08 E-value=0.093 Score=49.83 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=26.6
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
.+.+..|..|+||||+|..|+..+. ....+|.|..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 4444569999999999999988762 4577777753
No 432
>CHL00189 infB translation initiation factor 2; Provisional
Probab=93.05 E-value=0.45 Score=50.63 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.+.++|||+--....+....+..+|.+++|+..+..........+..+...+++ +-+++|+++.
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl 359 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDK 359 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCc
Confidence 57789999986322222222234467999999876554334445556667777887 4577899754
No 433
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.01 E-value=0.15 Score=43.92 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.9
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 014511 74 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 104 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 104 (423)
+..|+.|+||||+...+...|...|.+|.-+
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 3459999999999999999998887776443
No 434
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.99 E-value=0.084 Score=42.77 Aligned_cols=21 Identities=43% Similarity=0.366 Sum_probs=18.7
Q ss_pred EeeCCCCCcHHHHHHHHHHHH
Q 014511 74 VSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 74 v~s~KGGvGKTT~a~nLA~~L 94 (423)
+.+|..|+||||+|..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 345899999999999999998
No 435
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.99 E-value=1.5 Score=37.55 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=36.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 242 (423)
.+.+.++|+|+.-....+....+..+|.+++|...+.. ++..+...+..+ .. .+.+ +-+|.|+++.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECccc
Confidence 45678999976432111212224457888888776554 454444444333 21 2444 5578899764
No 436
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=92.97 E-value=0.93 Score=47.42 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCCC
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 255 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 255 (423)
.|.+.|+|||+-..........+..+|.+++|+.............+..+...+++ +-+|+|+++..... ...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~------~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD------PER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC------HHH
Confidence 47789999976433222222335568999999887653222222223333345666 45778997643211 012
Q ss_pred hHHHHHHHhCC
Q 014511 256 SGSQVVQQFGI 266 (423)
Q Consensus 256 ~~~~~~~~~~~ 266 (423)
..+++.+.++.
T Consensus 142 ~~~el~~~lg~ 152 (595)
T TIGR01393 142 VKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHhCC
Confidence 34566666664
No 437
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.97 E-value=0.2 Score=48.02 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=29.3
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH---CC---CcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~---~G---~~VlliD~D~~ 109 (423)
..++.+ .|..|+||||++.++|...+. .| .+|+.||....
T Consensus 96 g~i~~i-~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEI-FGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEE-ECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 344444 489999999999999974332 33 48999998753
No 438
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.92 E-value=0.14 Score=48.99 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~~VlliD~D~ 108 (423)
.|....|..|+||||++.++|...+. .+.+|+.||..-
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 44444499999999999999988763 223999999975
No 439
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=92.91 E-value=2.4 Score=35.39 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=35.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 243 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 243 (423)
+.+.++|+|+.-....+.......+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~ 118 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLE 118 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 457888987632221111112335688888776543 4455555555554433 233 56777987643
No 440
>PTZ00301 uridine kinase; Provisional
Probab=92.90 E-value=0.22 Score=44.61 Aligned_cols=40 Identities=28% Similarity=0.551 Sum_probs=30.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHH-CCC-cEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGA-RVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~-~VlliD~D~~~ 110 (423)
.+|+|+ |-.|+||||+|..|+..|.. .|- .|.++-.|-+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 577777 78899999999999988854 343 46677777654
No 441
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.90 E-value=5.8 Score=34.40 Aligned_cols=84 Identities=10% Similarity=0.141 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc--CCCCEEEEEEecccccCCCceee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK--LKVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~~--~~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
+.+.+.|.|+|+--....+.......+|.+++|..... .++..+...+..+ .. ..-..+-+|.|+.+....
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----
Confidence 35668899997532211121122445788888877654 3444444433333 21 112246778899754221
Q ss_pred ccCCChHHHHHHHhCCC
Q 014511 251 PFGRGSGSQVVQQFGIP 267 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (423)
...+++.+.++..
T Consensus 134 ----~~~~~~~~~l~l~ 146 (181)
T PLN00223 134 ----MNAAEITDKLGLH 146 (181)
T ss_pred ----CCHHHHHHHhCcc
Confidence 1356777777753
No 442
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=92.90 E-value=0.14 Score=46.93 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=26.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|.+|+++ |.=|+||||++..|+.. .|..| ||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~v--iDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIEV--IDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EehHHH
Confidence 4688888 78899999998866543 26654 999963
No 443
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.79 E-value=0.16 Score=52.57 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=34.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 109 (423)
..+|.++ |-.|+||||++..||..|.. .|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3466555 99999999999999999987 7888999999864
No 444
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=92.73 E-value=2.5 Score=35.50 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
.+.+.++|+|+.-....+....+..+|.++++..... .++..+...++.+.+. +.+ +-+|.|+.+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~ 118 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDK 118 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcc
Confidence 4678999998743222222222335788888877654 4555555555545432 333 4577798654
No 445
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=92.72 E-value=3 Score=39.98 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.|.+|-=|+||||+-.+|..... |+|+.+|=-+..-
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGE 39 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGE 39 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCcc
Confidence 345556668999999999877665 8999999777643
No 446
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=92.67 E-value=3 Score=36.30 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 242 (423)
.+++-|.|+++.-....+.......+|.+++|...+ ..++..+...++.+.+. ..+ + +|.|+++.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i-lVgnK~Dl 116 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I-LVGTKYDL 116 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E-EEEEchhc
Confidence 456788898754322222222244567887776654 44667776666666543 233 3 67899764
No 447
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=92.66 E-value=2.1 Score=36.20 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=37.8
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 242 (423)
+.+-|.|+++......+.......+|.++++... +..++..+...++.+.+.. ...+-+|.|+.+.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4567889875332222222223456778777653 4557777777666655432 1245677898654
No 448
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=92.66 E-value=0.17 Score=44.79 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.7
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
++|+++ |.-|+||||++..|+..+ |..| +|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 467777 889999999999877543 6554 688853
No 449
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.65 E-value=0.12 Score=45.74 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+.+.+|.+|+||||+|..||..+ |..+ ++..|.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 355556999999999999998875 5544 566664
No 450
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=92.63 E-value=2.2 Score=36.63 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=36.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~-s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~ 242 (423)
+...+.++|+|+...........+..+|.+++|...+.. ++..+...+..+ +.. +.+ +-++.|+++.
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCC
Confidence 345689999986432211112224467888888776543 344444433332 221 234 5678899753
No 451
>PRK03839 putative kinase; Provisional
Probab=92.62 E-value=0.14 Score=44.60 Aligned_cols=31 Identities=42% Similarity=0.522 Sum_probs=23.2
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
.|.++ |-.|+||||++..||..+ |+ -.+|+|
T Consensus 2 ~I~l~-G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 2 IIAIT-GTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 35555 889999999999888877 33 346665
No 452
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=92.59 E-value=0.66 Score=47.06 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=39.7
Q ss_pred eEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCC
Q 014511 70 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 118 (423)
Q Consensus 70 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~ 118 (423)
|-|.|++| -.|.||=.+|+.++..|..+|++|..+-+||+-+.-+..+.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~Gtms 51 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMS 51 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCC
Confidence 55666644 57889999999999999999999999999999765444433
No 453
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.58 E-value=0.12 Score=45.89 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=29.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 111 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~ 111 (423)
.+++.+..|-+|+||||++..+...+. +...+.||.|-...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 356777779999999999999877776 56789999998653
No 454
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=92.57 E-value=1.6 Score=37.11 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=38.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc--CCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK--LKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 242 (423)
..+.+.++|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 45678899997643322222222456788888877654 345555544444432 2445 4578899764
No 455
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.55 E-value=0.37 Score=51.78 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+|-+.+||||+-..........+..+|.+++|+.....-.......+..+.+.+.+. -+++|+++.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4567899999864332222223355679999998766543445666777666667775 477899764
No 456
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.53 E-value=0.22 Score=46.55 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.+++=|+ |-.|+||||+|.+++....+.|.+|..||+--
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4667777 88999999999999999999999999999864
No 457
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.53 E-value=3.6 Score=34.31 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=34.3
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 014511 177 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 242 (423)
Q Consensus 177 yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 242 (423)
+.+-|+|+|+.-....+....+..++.++++...+ ..++..+......+.+. +.+ +-+|.|+++.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34567899754322222222233467776665443 34555665555444432 445 4578899764
No 458
>PRK13973 thymidylate kinase; Provisional
Probab=92.50 E-value=0.25 Score=44.43 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=30.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+.|+|- |--|+||||.+-.|+..|..+|++|....
T Consensus 4 ~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677775 78899999999999999999999997663
No 459
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.50 E-value=0.27 Score=43.98 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..++|+|+ |-.|+||||+..+++..+. .+++|.++..|+.
T Consensus 21 ~~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 35677777 7789999999999998875 3579999998874
No 460
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=92.48 E-value=2.4 Score=40.89 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=36.8
Q ss_pred CcEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 014511 177 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMC 240 (423)
Q Consensus 177 yD~iiiD~pp~~~~-------~~~~~~~~~~~d~~iiv~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 240 (423)
..++|+|+|+-... .......+..++.+++|+..+.. .+.+.....+.+... +.+ .-+|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCc
Confidence 56899999764311 11111123346888888876643 445555555555433 334 45788997
Q ss_pred cc
Q 014511 241 HF 242 (423)
Q Consensus 241 ~~ 242 (423)
+.
T Consensus 284 DL 285 (329)
T TIGR02729 284 DL 285 (329)
T ss_pred cC
Confidence 64
No 461
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.47 E-value=0.16 Score=47.72 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCceEEEEeeCCCCCcHHHHHHHHHHHHHHC-CC-cEEEEEecCCC
Q 014511 67 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GA-RVGIFDADVYG 110 (423)
Q Consensus 67 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~-~VlliD~D~~~ 110 (423)
+..++|+++ |-||+||||+|..++.....+ .+ .|.-+++....
T Consensus 17 ~~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 17 NEVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp TSSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred CCeEEEEEE-cCCcCCcceeeeeccccccccccccccccccccccc
Confidence 344677777 899999999999999875533 23 46667776543
No 462
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=92.41 E-value=5.4 Score=34.30 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC--CCCEEEEEEecccccCCCceee
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL--KVPCIAVVENMCHFDADGKRYY 250 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~~~--~~~~~gvV~N~~~~~~~~~~~~ 250 (423)
..+.+.+.|+|+......+...-+..+|.+++|...+. .++..+...+..+ ... ....+-+|.|+++....
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 129 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA----- 129 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-----
Confidence 34668999998643322222222346788888877654 3455555554443 221 12246788899764221
Q ss_pred ccCCChHHHHHHHhCC
Q 014511 251 PFGRGSGSQVVQQFGI 266 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (423)
...+++.+.++.
T Consensus 130 ----~~~~~i~~~~~~ 141 (175)
T smart00177 130 ----MKAAEITEKLGL 141 (175)
T ss_pred ----CCHHHHHHHhCc
Confidence 124566666664
No 463
>PLN02422 dephospho-CoA kinase
Probab=92.41 E-value=0.18 Score=45.77 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.4
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
|++|+++ |.-|+||||++..|+ +.|.. ++|+|--
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~--~idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIP--VVDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCe--EEehhHH
Confidence 3577777 889999999999887 35765 5899863
No 464
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.34 E-value=0.18 Score=48.44 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=30.3
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 108 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~ 108 (423)
.+....|..|+|||+++.++|...+.. +.+|+.||++-
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 444444899999999999999887642 35999999975
No 465
>PRK13975 thymidylate kinase; Provisional
Probab=92.30 E-value=0.16 Score=44.75 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
|++.|+|. |--|+||||++..||..|.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 45677777 8899999999999999884
No 466
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.29 E-value=0.19 Score=52.87 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=30.9
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
-+++..|.+|+||||+.+.+...+.++|++|++.-
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 35667799999999999999999999999999975
No 467
>PRK13949 shikimate kinase; Provisional
Probab=92.29 E-value=0.14 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|+.|.+. |-.|+||||++..||..|. .-.+|+|.
T Consensus 1 m~~I~li-G~~GsGKstl~~~La~~l~-----~~~id~D~ 34 (169)
T PRK13949 1 MARIFLV-GYMGAGKTTLGKALARELG-----LSFIDLDF 34 (169)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHcC-----CCeecccH
Confidence 3567777 7889999999999998873 23567663
No 468
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.27 E-value=2.9 Score=35.60 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.1
Q ss_pred eEEEEeeCCCCCcHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLA 91 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA 91 (423)
..|+++ |..|+||||+...|.
T Consensus 15 ~~v~i~-G~~g~GKStLl~~l~ 35 (173)
T cd04155 15 PRILIL-GLDNAGKTTILKQLA 35 (173)
T ss_pred cEEEEE-ccCCCCHHHHHHHHh
Confidence 457777 899999999988763
No 469
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=92.26 E-value=2.4 Score=36.02 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 243 (423)
..+.+.|+|+|+...........+..+|.+++|...+ ..++..+. ..++.++.. +.+ +-+|.|+++..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 4577899999854322111122234578887776654 44555543 334444432 344 56677997653
No 470
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=92.24 E-value=0.22 Score=44.37 Aligned_cols=33 Identities=39% Similarity=0.284 Sum_probs=25.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
|++|+++ |.-|+||||++..|+. .|. .++|+|-
T Consensus 1 m~~igit-G~igsGKst~~~~l~~----~g~--~vid~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS----EGF--LIVDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----CCC--eEEeCcH
Confidence 4678888 8889999999998873 576 4688883
No 471
>PLN02327 CTP synthase
Probab=92.22 E-value=0.74 Score=46.90 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=39.7
Q ss_pred eEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCC
Q 014511 70 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 118 (423)
Q Consensus 70 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~ 118 (423)
|-|.|++| -.|.||=.+|+.|+..|..+|++|..+-+||+-+--+..+.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~Gtms 51 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMS 51 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCC
Confidence 55666644 57889999999999999999999999999999765444433
No 472
>PLN02348 phosphoribulokinase
Probab=92.18 E-value=0.3 Score=47.70 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.8
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCC---------------CcEEEEEecCCC
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVYG 110 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G---------------~~VlliD~D~~~ 110 (423)
..-+|+|+ |-.|+||||+|..|+..|...+ ..|.+|-+|-+.
T Consensus 48 ~p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 48 GTVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 34577777 8899999999999999997542 467788887654
No 473
>PRK13695 putative NTPase; Provisional
Probab=92.17 E-value=0.28 Score=42.42 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.7
Q ss_pred EEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 014511 71 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 102 (423)
Q Consensus 71 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 102 (423)
.|+++ |.+|+||||+...++..+...|.++.
T Consensus 2 ~i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45555 78999999999999998887888764
No 474
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=92.14 E-value=2.2 Score=36.10 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCCC-hhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 014511 176 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 242 (423)
Q Consensus 176 ~yD~iiiD~pp~~~-~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 242 (423)
.+.+-|+|+|+... ........+..+|.++++...+. .++..+......+... +.+ +-+|.|+.+.
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 34567899986442 11111222445788888877644 5566666666555542 344 4567798654
No 475
>PRK06851 hypothetical protein; Provisional
Probab=92.03 E-value=0.42 Score=46.51 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=38.5
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCccc
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 116 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~ 116 (423)
.+.+.+.+|-+|+||||+...++..+.++|++|-.+=+-....+++..
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgv 76 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGV 76 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeE
Confidence 345556679999999999999999999999999888665555666554
No 476
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=92.03 E-value=1.7 Score=43.48 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 014511 176 ELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 243 (423)
Q Consensus 176 ~yD~iiiD~pp~~~~---------~--~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 243 (423)
+..+.++|||+-... . ..+...+..+|.+++|..........-.+.+..+.+.+.+ +-+|+|+++..
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~ 296 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLV 296 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccC
Confidence 346899999863110 0 0011224467999999877654333334556666666666 55778997643
No 477
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.03 E-value=0.24 Score=42.97 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=29.2
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+.|. |..|+|||++...+...+...+.-++.++++...
T Consensus 25 ~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 25 RNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp --EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 455555 8999999999999999999775448888988873
No 478
>PRK04004 translation initiation factor IF-2; Validated
Probab=91.99 E-value=1.7 Score=45.30 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=38.6
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 178 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 178 D~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
.+.++|||+.-....+.......+|.+++|+..+..-.......+..+...+.+ +-+++|+++.
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~ 135 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDR 135 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCC
Confidence 478999986432222222223457889998887642223334445566667788 5578899764
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.94 E-value=0.26 Score=50.63 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.1
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..++.| .+-.|+|||+++.+++...+++|.+|+++.++-
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 345556 489999999999999999999999999999875
No 480
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=91.90 E-value=0.29 Score=46.15 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=26.9
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
+.+|. .+|-.|+||||+|..||..| |..+ +|-.|.-.
T Consensus 92 p~iIl-I~G~sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 92 PIIIL-IGGASGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CEEEE-EECCCCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 34555 55999999999999999888 5553 55576543
No 481
>PRK01184 hypothetical protein; Provisional
Probab=91.79 E-value=0.22 Score=43.43 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=21.2
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
|++|.++ |..|+||||++. + +.+.|..+ +|+
T Consensus 1 ~~~i~l~-G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 1 MKIIGVV-GMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred CcEEEEE-CCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 3566666 999999999864 3 34557665 554
No 482
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=91.74 E-value=8.7 Score=33.80 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 243 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 243 (423)
..+.+.|.|+|+.-....+....+..++++++|...+ ..++..+......+.. .+.| +-+|.|+.+..
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~ 123 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLK 123 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcc
Confidence 3567889999864322222222244678888887764 4566666655554432 2344 46788997653
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.73 E-value=0.17 Score=43.13 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=23.7
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 014511 75 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 109 (423)
Q Consensus 75 ~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 109 (423)
..|-.|+||||++..|+..+ | ..++|.|..
T Consensus 3 l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 45889999999999999887 3 455777764
No 484
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.70 E-value=0.16 Score=42.22 Aligned_cols=30 Identities=43% Similarity=0.532 Sum_probs=22.8
Q ss_pred EEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEec
Q 014511 72 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 107 (423)
Q Consensus 72 I~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 107 (423)
|+| +|..|+||||+|..||..+ |.. ++|.|
T Consensus 2 I~i-~G~~GsGKst~a~~la~~~---~~~--~~~~~ 31 (147)
T cd02020 2 IAI-DGPAGSGKSTVAKLLAKKL---GLP--YLDTG 31 (147)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---CCc--eeccc
Confidence 444 4999999999999999876 433 56666
No 485
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=91.69 E-value=1.7 Score=46.59 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=38.3
Q ss_pred CCCcEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~---~-----~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 242 (423)
....+.++|||+.... . ......+..+|.+++|+.....-...-..+.+.++..+.++ -+|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pv-IlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPV-VLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 4567889999863311 0 11111234578899988875421112224566677777775 456699753
No 486
>PRK14531 adenylate kinase; Provisional
Probab=91.63 E-value=0.21 Score=43.64 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.2
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
|.+.|.+. |..|+||||++..||..+
T Consensus 1 ~~~~i~i~-G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 1 MKQRLLFL-GPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 34566665 999999999999998876
No 487
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=91.57 E-value=0.55 Score=42.96 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=36.6
Q ss_pred ceEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCcccCC
Q 014511 69 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 118 (423)
Q Consensus 69 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~~~~ 118 (423)
||.|.|++| -.|.||=.+|+.+|..|..+|++|.++-+||+-+--+..+.
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~Gtms 51 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMS 51 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCC
Confidence 356666655 67899999999999999999999999999998765444433
No 488
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=91.51 E-value=1.5 Score=37.45 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEecccc
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 242 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 242 (423)
..+.+.|+|||+.-....+....+..+|.++++...+ ..++..+. ..+..+.+. +.+ +-+|.|+++.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhh
Confidence 3467899999874322222222234578888886654 34565554 344444432 444 5677899764
No 489
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=91.41 E-value=0.29 Score=43.63 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.6
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 110 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 110 (423)
.+|+++ |.-|+||||++..|+..+ |.. ++|+|.-.
T Consensus 7 ~~IglT-G~iGsGKStv~~~l~~~l---g~~--vidaD~i~ 41 (204)
T PRK14733 7 YPIGIT-GGIASGKSTATRILKEKL---NLN--VVCADTIS 41 (204)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EEeccHHH
Confidence 567777 888999999998877533 665 58888643
No 490
>PLN02165 adenylate isopentenyltransferase
Probab=91.31 E-value=0.22 Score=47.63 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=28.4
Q ss_pred ccCCceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 65 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 65 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
++...++|+++ |-.|+||||+|..||..+. .-+|++|-
T Consensus 39 ~~~~g~iivIi-GPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 39 QNCKDKVVVIM-GATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred cCCCCCEEEEE-CCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 34455677777 8899999999999988763 24677774
No 491
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.5 Score=45.04 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCceeeccCC
Q 014511 175 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 254 (423)
Q Consensus 175 ~~yD~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 254 (423)
..-+|||.|||+--....-.+.....+|.+++.+....--+...+|-.-...-+|++.+-+-+|+++...-.+..+.--.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence 34579999998632111111122334688899888877666777776666677899988888999765431111111111
Q ss_pred ChHHHHHHHhCCCeEEeecCch
Q 014511 255 GSGSQVVQQFGIPHLFDLPIRP 276 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ip~~~ 276 (423)
.....+++.+|......||.+.
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSA 185 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHcCCCcceEEechh
Confidence 2334566677888788899865
No 492
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.26 E-value=0.21 Score=45.31 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=22.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLA 95 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La 95 (423)
..|.+.+|-.||||||+|..+|..|.
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcC
Confidence 56777789999999999999998774
No 493
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.23 E-value=0.24 Score=39.15 Aligned_cols=23 Identities=39% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeCCCCCcHHHHHHHHHHHHHHC
Q 014511 75 SSCKGGVGKSTVAVNLAYTLAGM 97 (423)
Q Consensus 75 ~s~KGGvGKTT~a~nLA~~La~~ 97 (423)
..|..|+|||+++..||..+.+.
T Consensus 3 i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999999864
No 494
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.23 E-value=1.6 Score=37.15 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=33.2
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC------CCCEEEEEEeccccc
Q 014511 178 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL------KVPCIAVVENMCHFD 243 (423)
Q Consensus 178 D~iiiD~pp~~~~~~~~~~~~~~~d~~iiv~~p~~-~s~~~~~~~~~~l-~~~------~~~~~gvV~N~~~~~ 243 (423)
-+-++|+|+.-....+...-+..+|.++++..... .++..+....+.+ ... +.+ +-+|.|+++..
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 35688997533222222222334688888776543 3444444433322 221 344 45777997543
No 495
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.23 E-value=1.2 Score=44.37 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=37.0
Q ss_pred eEEEEeeC-CCCCcHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCc
Q 014511 70 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 114 (423)
Q Consensus 70 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~ 114 (423)
|-|.|++| -.|.||=.+|+.||..|..+|++|-.+-+||+-+--+
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDp 47 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDP 47 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCC
Confidence 45555543 4678999999999999999999999999999865443
No 496
>PRK13948 shikimate kinase; Provisional
Probab=91.18 E-value=0.37 Score=42.16 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=24.9
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
..|.+. |-.|+||||++..||..| |.+ +||+|.
T Consensus 11 ~~I~Li-G~~GsGKSTvg~~La~~l---g~~--~iD~D~ 43 (182)
T PRK13948 11 TWVALA-GFMGTGKSRIGWELSRAL---MLH--FIDTDR 43 (182)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEECCH
Confidence 345555 888999999999998877 444 469994
No 497
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.16 E-value=0.25 Score=46.94 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.7
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEecC
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 108 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 108 (423)
.++|+|+ |..|+||||+|..||..+ .+.+|.+|-
T Consensus 4 ~~~i~i~-GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIV-GPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEE-CCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 3556555 899999999999999875 345677775
No 498
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=91.15 E-value=0.38 Score=42.76 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=24.6
Q ss_pred ceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEe
Q 014511 69 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 106 (423)
Q Consensus 69 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 106 (423)
|++++++ |-.|+|||.+|+.||..+ |-.|+..|-
T Consensus 1 M~v~~i~-GpT~tGKt~~ai~lA~~~---g~pvI~~Dr 34 (233)
T PF01745_consen 1 MKVYLIV-GPTGTGKTALAIALAQKT---GAPVISLDR 34 (233)
T ss_dssp -EEEEEE--STTSSHHHHHHHHHHHH-----EEEEE-S
T ss_pred CcEEEEE-CCCCCChhHHHHHHHHHh---CCCEEEecc
Confidence 5788888 778999999999998876 567777664
No 499
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.09 E-value=0.49 Score=42.26 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=31.5
Q ss_pred CceEEEEeeCCCCCcHHHHHHHHHHHHHHCCCcEEEEE
Q 014511 68 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 105 (423)
Q Consensus 68 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD 105 (423)
+++.|+|= |==|+||||.+..|+..|..+|++|.+.=
T Consensus 2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 2 KGMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35677777 66789999999999999999999888763
No 500
>PRK14528 adenylate kinase; Provisional
Probab=91.08 E-value=0.31 Score=42.76 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=19.5
Q ss_pred eEEEEeeCCCCCcHHHHHHHHHHHH
Q 014511 70 NIVAVSSCKGGVGKSTVAVNLAYTL 94 (423)
Q Consensus 70 kvI~v~s~KGGvGKTT~a~nLA~~L 94 (423)
+.|.|. |.+|+||||+|..||..+
T Consensus 2 ~~i~i~-G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFM-GPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 456665 789999999999988766
Done!